BLASTX nr result
ID: Rauwolfia21_contig00025202
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00025202
(289 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD17357.1| contains similarity to retrovirus-related polypro... 122 4e-26
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group] 109 3e-22
dbj|BAA22288.1| polyprotein [Oryza australiensis] 104 1e-20
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 104 1e-20
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 104 1e-20
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc... 104 1e-20
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group] 104 1e-20
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 102 5e-20
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 100 2e-19
ref|XP_006369910.1| hypothetical protein POPTR_0001s34915g [Popu... 100 2e-19
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 99 6e-19
gb|AAD17359.1| contains similarity to retrovirus-related polypro... 86 4e-15
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 85 1e-14
emb|CAN63912.1| hypothetical protein VITISV_044222 [Vitis vinifera] 79 8e-13
emb|CAN75392.1| hypothetical protein VITISV_020537 [Vitis vinifera] 70 3e-10
emb|CAN67912.1| hypothetical protein VITISV_004101 [Vitis vinifera] 69 5e-10
gb|AAD12997.1| gag-pol polyprotein [Zea mays] 69 6e-10
gb|AAD12994.1| gag-pol polyprotein [Zea mays] 69 6e-10
emb|CBI20118.3| unnamed protein product [Vitis vinifera] 68 1e-09
emb|CAN76092.1| hypothetical protein VITISV_027115 [Vitis vinifera] 67 2e-09
>gb|AAD17357.1| contains similarity to retrovirus-related polyproteins [Arabidopsis
thaliana] gi|7267382|emb|CAB77943.1| putative transposon
protein [Arabidopsis thaliana]
Length = 769
Score = 122 bits (307), Expect = 4e-26
Identities = 55/96 (57%), Positives = 73/96 (76%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
G+ +S +E+G VDLR+ NGA+V+ L VGTY L P+G+VLEL NCY+V + KNIISV+
Sbjct: 75 GINNSITMEEGQVDLRMANGARVSTLVVGTYSLSFPSGMVLELKNCYYVHAINKNIISVS 134
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
CLD++GFH KNKCCSF N++ YG+A + N LYV
Sbjct: 135 CLDMEGFHFLIKNKCCSFDRNDMFYGSAPLENELYV 170
>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
Length = 923
Score = 109 bits (273), Expect = 3e-22
Identities = 52/96 (54%), Positives = 67/96 (69%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
GLK SR L +G+VD+RVGNGA+VA +AVGT L LP+GLVLEL NCY +P L KN+IS +
Sbjct: 277 GLKRSRSLARGEVDIRVGNGARVAVVAVGTMSLSLPSGLVLELNNCYCIPALCKNVISAS 336
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
CL +G+ + CS N++ Y A M NGLY+
Sbjct: 337 CLQAEGYGFRSVDNGCSVYYNDIFYFNAPMMNGLYI 372
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 104 bits (260), Expect = 1e-20
Identities = 51/96 (53%), Positives = 66/96 (68%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
G++ SR L +G+V+LRVGNGA VA +AVGT L LP+GLVLEL NCY VP L +N+IS +
Sbjct: 318 GMRRSRGLRRGEVNLRVGNGASVATVAVGTVPLHLPSGLVLELNNCYCVPTLCQNVISAS 377
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
CL +G+ N CS L ++ Y A + NGLYV
Sbjct: 378 CLQAEGYDFRSMNNGCSIYLRDMFYFHAPLVNGLYV 413
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 104 bits (260), Expect = 1e-20
Identities = 51/96 (53%), Positives = 65/96 (67%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
GLK SR L +G VD+RVGNG +VA +AVGT L LP+GLVLEL NCY +P L KN+IS +
Sbjct: 410 GLKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELNNCYCIPALCKNVISAS 469
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
CL +G+ + CS N++ Y A M NGLY+
Sbjct: 470 CLQAEGYGFRSMDNGCSVYYNDLFYFHAPMMNGLYI 505
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 104 bits (260), Expect = 1e-20
Identities = 51/96 (53%), Positives = 65/96 (67%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
GLK SR L +G VD+RVGNG +VA +AVGT L LP+GLVLEL NCY +P L KN+IS +
Sbjct: 410 GLKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGLVLELNNCYCIPALCKNVISAS 469
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
CL +G+ + CS N++ Y A M NGLY+
Sbjct: 470 CLQAEGYGFRSMDNGCSVYYNDLFYFHAPMMNGLYI 505
>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 104 bits (259), Expect = 1e-20
Identities = 50/96 (52%), Positives = 66/96 (68%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
GLK SR L +G+VD+RVGNGA+VAA+AVGT L LP+G+VLEL NCY + L KN+IS +
Sbjct: 370 GLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGIVLELNNCYCIRALCKNVISAS 429
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
CL +G+ + CS N++ Y M NGLY+
Sbjct: 430 CLQAEGYGFRSVDNGCSVYYNDIFYFHVPMMNGLYI 465
>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1084
Score = 104 bits (259), Expect = 1e-20
Identities = 50/96 (52%), Positives = 66/96 (68%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
GLK SR L +G+VD+RVGNGA+VAA+AVGT L LP+G+VLEL NCY + L KN+IS +
Sbjct: 297 GLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGIVLELNNCYCIRALCKNVISAS 356
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
CL +G+ + CS N++ Y M NGLY+
Sbjct: 357 CLQAEGYGFRSVDNGCSVYYNDIFYFHVPMMNGLYI 392
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550379|gb|ABA93176.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 938
Score = 102 bits (254), Expect = 5e-20
Identities = 50/96 (52%), Positives = 64/96 (66%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
GLK SR L +G+VD+ VGNGA V A+AVGT L LP+GLVLEL NCY + L KN+IS +
Sbjct: 203 GLKRSRNLARGEVDIHVGNGASVVAVAVGTMPLSLPSGLVLELNNCYCILALCKNVISAS 262
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
CL +G+ + CS N++ Y A M NGLY+
Sbjct: 263 CLQAEGYGFRSVDNGCSVYYNDIFYFHAPMMNGLYI 298
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 100 bits (250), Expect = 2e-19
Identities = 50/96 (52%), Positives = 66/96 (68%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
GLK SR L +G+VD+RVGNGA+VAA+AVGT L LP+ LVLEL N Y +P L KN+IS +
Sbjct: 294 GLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSRLVLELNNYYCIPALCKNVISAS 353
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
CL +G+ + CS N++ Y A M +GLY+
Sbjct: 354 CLQAEGYGFRSVDNDCSVYYNDIFYFHAPMMSGLYI 389
>ref|XP_006369910.1| hypothetical protein POPTR_0001s34915g [Populus trichocarpa]
gi|550348894|gb|ERP66479.1| hypothetical protein
POPTR_0001s34915g [Populus trichocarpa]
Length = 120
Score = 100 bits (249), Expect = 2e-19
Identities = 48/95 (50%), Positives = 61/95 (64%)
Frame = +2
Query: 5 LKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVAC 184
L SRRL KG+VDL VGNG K L V TY+L G++LEL NCYFV +L +NI+SV+
Sbjct: 6 LTKSRRLCKGEVDLYVGNGTKAVTLTVETYYLTFQIGIILELDNCYFVSILSRNIVSVSF 65
Query: 185 LDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
L ++G KCCSF +NV+YG N LY+
Sbjct: 66 LALNGLKFIMNGKCCSFYNDNVYYGYGIYMNSLYI 100
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 99.0 bits (245), Expect = 6e-19
Identities = 45/95 (47%), Positives = 67/95 (70%)
Frame = +2
Query: 5 LKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVAC 184
L +RR+ +G++DLRVGN AKVAAL+ T L LP+G ++EL NCY+VP + +NIIS +C
Sbjct: 407 LTKNRRVARGEMDLRVGNKAKVAALSAETLPLVLPSGFIMELNNCYYVPAMSRNIISASC 466
Query: 185 LDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
L +G+ ++ CS LN++ YG A + NGL++
Sbjct: 467 LMTEGYKFIIEDHGCSIFLNDMFYGYAPVLNGLFI 501
>gb|AAD17359.1| contains similarity to retrovirus-related polyproteins [Arabidopsis
thaliana]
Length = 201
Score = 86.3 bits (212), Expect = 4e-15
Identities = 43/96 (44%), Positives = 59/96 (61%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
G+ +S +E+ VDLR+ NGA+V+ L L NCY+V + KNIISV+
Sbjct: 75 GVNNSITMEERQVDLRMANGARVSTL----------------LKNCYYVHAINKNIISVS 118
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
CLD++ FH KNKCCSF N++ YG+A + N LYV
Sbjct: 119 CLDMESFHFLIKNKCCSFDRNDMFYGSAPLENELYV 154
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 84.7 bits (208), Expect = 1e-14
Identities = 35/58 (60%), Positives = 48/58 (82%)
Frame = +2
Query: 116 LVLELTNCYFVPVLLKNIISVACLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
+VLEL NCY+VP + KNIISV+CLD++GFH + KNKCCSF +++ YG+A + NGL+V
Sbjct: 1 MVLELKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHV 58
>emb|CAN63912.1| hypothetical protein VITISV_044222 [Vitis vinifera]
Length = 1100
Score = 78.6 bits (192), Expect = 8e-13
Identities = 40/95 (42%), Positives = 57/95 (60%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
G +S+RL KG+ + +GNG KV A+GT HL L TG +++L + +VPV +N+ISV
Sbjct: 192 GYLTSKRLSKGERTITLGNGTKVEIEAIGTLHLILDTGFIMDLVDTVYVPVFTRNLISVT 251
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLY 286
LD G+ L F NK S N+ G+ T+ LY
Sbjct: 252 RLDSYGYELKFGNKEVSLFYNSCLVGSGTLRGNLY 286
>emb|CAN75392.1| hypothetical protein VITISV_020537 [Vitis vinifera]
Length = 775
Score = 70.1 bits (170), Expect = 3e-10
Identities = 33/85 (38%), Positives = 55/85 (64%)
Frame = +2
Query: 32 GDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVACLDIDGFHLT 211
G+ + VGNG KVA A+G + L L +G L+L + VP+ +N+IS++C+D G++ +
Sbjct: 5 GERYIYVGNGNKVAVNAIGFFRLQLDSGCTLDLEETFVVPLFRRNLISISCMDKCGYYCS 64
Query: 212 FKNKCCSFSLNNVHYGTATMTNGLY 286
F+N S LN+ GT+++T+ LY
Sbjct: 65 FRNGMVSLXLNSSVIGTSSLTDKLY 89
>emb|CAN67912.1| hypothetical protein VITISV_004101 [Vitis vinifera]
Length = 1012
Score = 69.3 bits (168), Expect = 5e-10
Identities = 35/95 (36%), Positives = 55/95 (57%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
G +S++L KG+ + +GNG +V A+G+ HL L G +++L + +VPV +N+ISV
Sbjct: 275 GYLTSKKLSKGERTITLGNGIEVEIEAIGSLHLILDIGFIMDLVDTIYVPVFTRNLISVP 334
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLY 286
LD G+ L F N S N+ G+ T+ LY
Sbjct: 335 RLDSYGYELKFGNNGVSLFYNSCLVGSGTLHGNLY 369
>gb|AAD12997.1| gag-pol polyprotein [Zea mays]
Length = 1406
Score = 68.9 bits (167), Expect = 6e-10
Identities = 38/96 (39%), Positives = 54/96 (56%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
GL++S+RL KG +RV NG + A A+G HL L G VL L + +VP L +N+ISV+
Sbjct: 317 GLRTSQRLPKGRRTIRVANGVEAAVEAIGDIHLKLVNGFVLLLRDVLYVPSLRRNLISVS 376
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
LD H F ++ C +N G A + LY+
Sbjct: 377 RLDDQHIHCHFGDRQCVIQFDNKDVGLAIRRDMLYL 412
>gb|AAD12994.1| gag-pol polyprotein [Zea mays]
Length = 595
Score = 68.9 bits (167), Expect = 6e-10
Identities = 38/96 (39%), Positives = 54/96 (56%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
GL++S+RL KG +RV NG + A A+G HL L G VL L + +VP L +N+ISV+
Sbjct: 317 GLRTSQRLPKGRRTIRVANGVEAAVEAIGDIHLKLVNGFVLLLRDVLYVPSLRRNLISVS 376
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLYV 289
LD H F ++ C +N G A + LY+
Sbjct: 377 RLDDQHIHCHFGDRQCVIQFDNKDVGLAIRRDMLYL 412
>emb|CBI20118.3| unnamed protein product [Vitis vinifera]
Length = 1354
Score = 68.2 bits (165), Expect = 1e-09
Identities = 34/95 (35%), Positives = 59/95 (62%)
Frame = +2
Query: 2 GLKSSRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVA 181
G ++R+ ++ + L +GN KV +AVGTY L L TG ++L N ++VP + +N++S++
Sbjct: 679 GFLTTRKPKESEKFLYMGNRLKVEVVAVGTYRLLLETGHRMDLLNTFYVPSISRNLVSLS 738
Query: 182 CLDIDGFHLTFKNKCCSFSLNNVHYGTATMTNGLY 286
LD G+ + F + S LN+V G+ + +GLY
Sbjct: 739 KLDATGYSVLFSSGQLSLMLNSVTIGSGILCDGLY 773
>emb|CAN76092.1| hypothetical protein VITISV_027115 [Vitis vinifera]
Length = 887
Score = 67.4 bits (163), Expect = 2e-09
Identities = 36/91 (39%), Positives = 54/91 (59%)
Frame = +2
Query: 14 SRRLEKGDVDLRVGNGAKVAALAVGTYHLPLPTGLVLELTNCYFVPVLLKNIISVACLDI 193
SR G+ + VGNG KVA A+G + L L +G L+L + VP +N+I V+CLD
Sbjct: 7 SRMPTNGERYIYVGNGNKVAMKAIGIFRLQLDSGCTLDLEETFVVPSSRQNLIYVSCLDK 66
Query: 194 DGFHLTFKNKCCSFSLNNVHYGTATMTNGLY 286
G++ +F+N S LN+ GT ++T+ LY
Sbjct: 67 CGYYCSFRNGMVSLYLNSNIIGTGSLTDKLY 97