BLASTX nr result
ID: Rauwolfia21_contig00020951
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00020951
(2819 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 296 e-129
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 296 e-129
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 288 e-128
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 305 e-128
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 290 e-122
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 299 e-122
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 270 e-120
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 292 e-116
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 274 e-113
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 270 e-112
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 252 e-112
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 249 e-111
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 257 e-111
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 278 e-106
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 272 e-105
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 281 e-105
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 286 e-103
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 271 e-103
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 231 e-100
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 270 e-100
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 296 bits (757), Expect(3) = e-129
Identities = 153/378 (40%), Positives = 221/378 (58%), Gaps = 14/378 (3%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA E++ YNR ISPR LKVDL+KA+D+V W+F+ +R P ++I WI +CITT
Sbjct: 431 LATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTP 490
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
+ ++++NG GFF+ KGLRQGDP+SP LFVL +E S+ + ++HP+ G L
Sbjct: 491 SFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDL 550
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGV-LGTDLQH 1670
I+HL FADD+++F G S+ + LD FA+ +GLKVN +KS++F AG+ L +
Sbjct: 551 SISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDLSERITS 610
Query: 1671 IVYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLIS 1850
Y GF G P RYLG+PL KLR++ Y PLLEK++ + + +LS+AGR QLIS
Sbjct: 611 AAY--GFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLIS 668
Query: 1851 SVLQGITCFWLAIFPTPAMVLHRINAQVRKFLW-----NSKQSPISWSQVCLQKNEGGLG 2015
SV+ G+ FW++ F P + +I + KFLW K S +SW CL K+EGGLG
Sbjct: 669 SVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLG 728
Query: 2016 LRDLSKWNLALMAKTLWNIHAKD-SLWVKWVHHQYFNQEPLWERQPKKDDSALMKRMLHA 2192
R +WN L+ + +W + +D SLW +W H W+ + D K +L+
Sbjct: 729 FRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNL 788
Query: 2193 RNI-------MITNEGTV 2225
R + + N GTV
Sbjct: 789 RPLAEKFIKAKVGNGGTV 806
Score = 176 bits (447), Expect(3) = e-129
Identities = 99/271 (36%), Positives = 158/271 (58%), Gaps = 3/271 (1%)
Frame = +1
Query: 328 YSHISSRVDRAKMALEEIRTIQLQDPTNQQLAAQVDQARRVAWNLAE-AESRFYFQLAKC 504
YS I R A L + + L +P+ A +++ R+ W L AE F+ Q ++
Sbjct: 161 YSGIELRTKEAHELLITCQNLTLANPSVSNAALELEAQRK--WVLLSCAEESFFHQRSRV 218
Query: 505 KVLKEGDRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVDFYQSLLGTREN 684
EGD T +FH + N I ++ +G +SQ I V +Y+ LLG+ E+
Sbjct: 219 SWFAEGDSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIES 278
Query: 685 TTPVDP--IVLDIGNKLSRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACFFKRA 858
++ + L + + S+DQ L + TD+EIK+A ++ NK+ GPDGY+ FF+
Sbjct: 279 PFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDT 338
Query: 859 WPIIGDSVIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYKIISK 1038
W IIG V+AA EFF SG++LKQ N T + LIPK+ + ++ +FRPI+C N LYK+ISK
Sbjct: 339 WSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISK 398
Query: 1039 VLSARLKSVMGSIIDQAQAAFVEGRLMAENI 1131
+L++RL+ ++ ++I +Q+AF+ GR +AEN+
Sbjct: 399 LLTSRLQGLLSAVIGHSQSAFLPGRSLAENV 429
Score = 42.4 bits (98), Expect(3) = e-129
Identities = 34/101 (33%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Frame = +2
Query: 2 FTWTNNW----VWSKLDRAMANHTCLVENVDVQVNFFPIGC-------ISDHSLCYLSIG 148
FTW N + KLDR +AN D N +P SDH C + +
Sbjct: 48 FTWWNKSSIRPIAKKLDRILAN--------DSWCNLYPSSHGLFGNLDFSDHVSCGVVLE 99
Query: 149 QRQNTRSRPFKFLNMWCSNEKFLNVVEDICVFLSWEQPNFV 271
+ RPFKF N NE FLNVV D +W N V
Sbjct: 100 ANGISAKRPFKFFNFLLKNEDFLNVVMD-----NWFSTNVV 135
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 296 bits (757), Expect(3) = e-129
Identities = 153/378 (40%), Positives = 221/378 (58%), Gaps = 14/378 (3%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA E++ YNR ISPR LKVDL+KA+D+V W+F+ +R P ++I WI +CITT
Sbjct: 431 LATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITTP 490
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
+ ++++NG GFF+ KGLRQGDP+SP LFVL +E S+ + ++HP+ G L
Sbjct: 491 SFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGDL 550
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGV-LGTDLQH 1670
I+HL FADD+++F G S+ + LD FA+ +GLKVN +KS++F AG+ L +
Sbjct: 551 SISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGLDLSERITS 610
Query: 1671 IVYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLIS 1850
Y GF G P RYLG+PL KLR++ Y PLLEK++ + + +LS+AGR QLIS
Sbjct: 611 AAY--GFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLIS 668
Query: 1851 SVLQGITCFWLAIFPTPAMVLHRINAQVRKFLW-----NSKQSPISWSQVCLQKNEGGLG 2015
SV+ G+ FW++ F P + +I + KFLW K S +SW CL K+EGGLG
Sbjct: 669 SVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLG 728
Query: 2016 LRDLSKWNLALMAKTLWNIHAKD-SLWVKWVHHQYFNQEPLWERQPKKDDSALMKRMLHA 2192
R +WN L+ + +W + +D SLW +W H W+ + D K +L+
Sbjct: 729 FRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTDPWTWKMLLNL 788
Query: 2193 RNI-------MITNEGTV 2225
R + + N GTV
Sbjct: 789 RPLAEKFIKAKVGNGGTV 806
Score = 176 bits (447), Expect(3) = e-129
Identities = 99/271 (36%), Positives = 158/271 (58%), Gaps = 3/271 (1%)
Frame = +1
Query: 328 YSHISSRVDRAKMALEEIRTIQLQDPTNQQLAAQVDQARRVAWNLAE-AESRFYFQLAKC 504
YS I R A L + + L +P+ A +++ R+ W L AE F+ Q ++
Sbjct: 161 YSGIELRTKEAHELLITCQNLTLANPSVSNAALELEAQRK--WVLLSCAEESFFHQRSRV 218
Query: 505 KVLKEGDRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVDFYQSLLGTREN 684
EGD T +FH + N I ++ +G +SQ I V +Y+ LLG+ E+
Sbjct: 219 SWFAEGDSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIES 278
Query: 685 TTPVDP--IVLDIGNKLSRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACFFKRA 858
++ + L + + S+DQ L + TD+EIK+A ++ NK+ GPDGY+ FF+
Sbjct: 279 PFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDT 338
Query: 859 WPIIGDSVIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYKIISK 1038
W IIG V+AA EFF SG++LKQ N T + LIPK+ + ++ +FRPI+C N LYK+ISK
Sbjct: 339 WSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISK 398
Query: 1039 VLSARLKSVMGSIIDQAQAAFVEGRLMAENI 1131
+L++RL+ ++ ++I +Q+AF+ GR +AEN+
Sbjct: 399 LLTSRLQGLLSAVIGHSQSAFLPGRSLAENV 429
Score = 42.4 bits (98), Expect(3) = e-129
Identities = 34/101 (33%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Frame = +2
Query: 2 FTWTNNW----VWSKLDRAMANHTCLVENVDVQVNFFPIGC-------ISDHSLCYLSIG 148
FTW N + KLDR +AN D N +P SDH C + +
Sbjct: 48 FTWWNKSSIRPIAKKLDRILAN--------DSWCNLYPSSHGLFGNLDFSDHVSCGVVLE 99
Query: 149 QRQNTRSRPFKFLNMWCSNEKFLNVVEDICVFLSWEQPNFV 271
+ RPFKF N NE FLNVV D +W N V
Sbjct: 100 ANGISAKRPFKFFNFLLKNEDFLNVVMD-----NWFSTNVV 135
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 288 bits (737), Expect(3) = e-128
Identities = 149/360 (41%), Positives = 214/360 (59%), Gaps = 6/360 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA EL++ + + IS R LKVDLRKA+D+V W F++E ++ P +F+ WI++CIT+T
Sbjct: 570 LATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITST 629
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
+ S+ ++G L G+FKG KGLRQGDP+SPSLFV+ +E LSR ++ + D + +HP+ ++
Sbjct: 630 SFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEV 689
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
+I+ LAFADDL++F G S+ + L+ F +GL++N EKS ++TAG+ TD +
Sbjct: 690 RISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDT 749
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
+ GF G P RYLG+PL KLR S Y+ L++KI N +LS+AGR QLISS
Sbjct: 750 L-AFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISS 808
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLWNSK-----QSPISWSQVCLQKNEGGLGL 2018
V+ FWL+ F P L I +FLW + +SW CL K EGGLGL
Sbjct: 809 VIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGL 868
Query: 2019 RDLSKWNLALMAKTLWNIHA-KDSLWVKWVHHQYFNQEPLWERQPKKDDSALMKRMLHAR 2195
R+ WN L + +W + A +DSLWV W H W + S + K +L R
Sbjct: 869 RNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLR 928
Score = 189 bits (479), Expect(3) = e-128
Identities = 111/303 (36%), Positives = 168/303 (55%), Gaps = 5/303 (1%)
Frame = +1
Query: 238 RIPLMGTTQFCLCAXXXXXXXXXXXXXXXEYSHISSRVDRAKMALEEIRTIQLQDPTNQQ 417
R+ G+ F L YS + RV +A L+ + L P++
Sbjct: 269 RLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNNLLAAPSSY- 327
Query: 418 LAAQVDQARRVAWNLAEAESRFYFQLAKCKVLKEGDRCTKFFHDLAKRNAKKNFIANITR 597
LA +A R LA AE RF Q ++ LK GD T FFH + N I +
Sbjct: 328 LAGLEKEAHRSWAELALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLD 387
Query: 598 RDGRRTESQSQIAAEFVDFYQSLLGTRENTTPVDPIVLDIGNKLSRDQVDHLAR-----D 762
+ GRR E+ ++ VDF++ L G+ + + I N L+R + D R +
Sbjct: 388 QTGRRIENTDELQTHCVDFFKELFGSSSHLISAEGISQI--NSLTRFKCDENTRQLLEAE 445
Query: 763 VTDEEIKSALFAIGDNKSPGPDGYTACFFKRAWPIIGDSVIAACREFFASGRMLKQINHT 942
V++ +IKS FA+ NKSPGPDGYT+ FFK+ W I+G S+IAA +EFF SGR+L Q N T
Sbjct: 446 VSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNST 505
Query: 943 IISLIPKSDHTNSVGDFRPIACCNVLYKIISKVLSARLKSVMGSIIDQAQAAFVEGRLMA 1122
++++PK + + + +FRPI+CCN +YK+ISK+L+ RL++++ I +Q+AFV+GRL+
Sbjct: 506 AVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLT 565
Query: 1123 ENI 1131
EN+
Sbjct: 566 ENV 568
Score = 33.1 bits (74), Expect(3) = e-128
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 2 FTWTNNW----VWSKLDRAMANHTCLVENVDVQVNFFPIGCISDHSLCYLSIGQRQNTRS 169
+TW NN + K+DR + N + L+ + + F SDH ++I + R+
Sbjct: 186 YTWWNNQENNPIAKKIDRILVNDSWLIAS-PLSYGSFCAMEFSDHCPSCVNISNQSGGRN 244
Query: 170 RPFKFLNMWCSNEKFLNVV 226
+PFK N + +F+ +
Sbjct: 245 KPFKLSNFLMHHPEFIEKI 263
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 305 bits (782), Expect(4) = e-128
Identities = 155/378 (41%), Positives = 231/378 (61%), Gaps = 6/378 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA ELIR YNR+ +SPRC +KVD+RKAYD+V W FL +++ GFP+ FI WI C+ T
Sbjct: 565 LATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTV 624
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
+ S+ +NG F +KGLRQGDP+SP LF L +EYLSR + +DP FNFHP+C ++
Sbjct: 625 SYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERI 684
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
K+THL FADDL++F+R D S+ +M + F++ +GL+ +IEKS I+ GV + + +
Sbjct: 685 KLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQL 744
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
+ G LP RYLGVPLA++KL S PL++KI G A LSYAGR QL+ +
Sbjct: 745 ADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVKT 804
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLW-----NSKQSPISWSQVCLQKNEGGLGL 2018
+L + +W IFP P ++ + RKFLW S ++P++W + K+ GGL +
Sbjct: 805 ILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTGTVDTSYKAPVAWDFLQQPKSTGGLNV 864
Query: 2019 RDLSKWNLALMAKTLWNIHAK-DSLWVKWVHHQYFNQEPLWERQPKKDDSALMKRMLHAR 2195
++ WN A + K LW I K D LWV+WV+ Y ++ + + S +++++ +R
Sbjct: 865 TNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNIENVTVSSNTSWILRKIFESR 924
Query: 2196 NIMITNEGTVQAAVQRLN 2249
++T G +A +N
Sbjct: 925 E-LLTRTGGWEAVSNHMN 941
Score = 151 bits (381), Expect(4) = e-128
Identities = 89/259 (34%), Positives = 138/259 (53%), Gaps = 1/259 (0%)
Frame = +1
Query: 358 AKMALEEIRTIQLQDPTNQQLAAQVDQARRVAWNLAEAESRFYFQLAKCKVLKEGDRCTK 537
A AL E+ + + L AQ+ + + ++ + +SR + L GD +K
Sbjct: 312 AVQALPEVSQVSELQEEEKDLIAQLRKWSTIDESILKQKSRIQW-------LSLGDSNSK 364
Query: 538 FFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVDFYQSLLGTRENTTP-VDPIVLD 714
FF K +N I + G + ++I E +FY+ LLGT + +D V+
Sbjct: 365 FFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQLEAIDLHVVR 424
Query: 715 IGNKLSRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACFFKRAWPIIGDSVIAAC 894
+G KLS L + +T +EI AL I D K+PG DG+ + FFK++W +I +
Sbjct: 425 VGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQEIYEGI 484
Query: 895 REFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYKIISKVLSARLKSVMGS 1074
+FF +G M K IN T ++LIPK D D+RPIACC+ LYKIISK+L+ RL++V+
Sbjct: 485 LDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITE 544
Query: 1075 IIDQAQAAFVEGRLMAENI 1131
++D AQ F+ R + +NI
Sbjct: 545 VVDCAQTGFIPERHIGDNI 563
Score = 49.3 bits (116), Expect(4) = e-128
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 2338 RPVWNSANTPKHSFVCWLAVKQRLATMDKLPFVPE--NKMCGFCKCRDETHNHLFFSCHV 2511
R + N+ TPK F+ WLA+ RLAT +++ + +C C ET HLFF+C
Sbjct: 962 RLICNNKATPKSQFILWLAMLNRLATAERVSRWNRDVSPLCKMCGNEIETIQHLFFNCIY 1021
Query: 2512 IGRIWNQIRSWLGIR 2556
IW ++ +L ++
Sbjct: 1022 SKEIWGKVLLYLNLQ 1036
Score = 25.0 bits (53), Expect(4) = e-128
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 2649 TCTVYTIWMVRNRIIFEG 2702
T +VY IW++RN +F G
Sbjct: 1067 TESVYAIWLLRNAKVFRG 1084
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 290 bits (742), Expect(3) = e-122
Identities = 155/360 (43%), Positives = 213/360 (59%), Gaps = 6/360 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA +L+ YN ISPR LKVDL+KA+D+V W+F++ +R P KFI WI +CI+T
Sbjct: 571 LATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTP 630
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
+V+ING GFFK KGLRQGDP+SP LFVL +E S + ++HP+ L
Sbjct: 631 TFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASNL 690
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
I+HL FADD+++F G S+ + LD FA +GLKVN +KS ++ AG+ + +
Sbjct: 691 SISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLE-SNA 749
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
GF G LP RYLG+PL KLR++ Y PLLEKI LS+AGR QLISS
Sbjct: 750 NAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISS 809
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLWN-----SKQSPISWSQVCLQKNEGGLGL 2018
V+ G FW++ F P + RI + +FLW+ +K +SW+ +CL K+EGGLGL
Sbjct: 810 VIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGL 869
Query: 2019 RDLSKWNLALMAKTLWNIH-AKDSLWVKWVHHQYFNQEPLWERQPKKDDSALMKRMLHAR 2195
R L +WN L + +W + AKDSLW W H + ++ W + + DS KR+L R
Sbjct: 870 RRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLR 929
Score = 166 bits (419), Expect(3) = e-122
Identities = 101/276 (36%), Positives = 154/276 (55%), Gaps = 8/276 (2%)
Frame = +1
Query: 328 YSHISSRVDRAKMALEEIRTIQLQDPTNQQLAAQVDQARRVAWN-LAEAESRFYFQLAKC 504
YS + R A L + L DPT + +++ R+ W+ L AE F+ Q ++
Sbjct: 301 YSELEKRTKEAHDFLIGCQDRTLADPTPINASFELEAERK--WHILTAAEESFFRQKSRI 358
Query: 505 KVLKEGDRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVDFYQSLLGTREN 684
EGD TK+FH +A N I+ + +G+ +SQ I ++ SLLG
Sbjct: 359 SWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDE-- 416
Query: 685 TTPVDPIVLD-------IGNKLSRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTAC 843
VDP +++ + + S QV L ++E+I++ALF++ NKS GPDG+TA
Sbjct: 417 ---VDPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAE 473
Query: 844 FFKRAWPIIGDSVIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLY 1023
FF +W I+G V A +EFF+SG +LKQ N T I LIPK + DFRPI+C N LY
Sbjct: 474 FFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLY 533
Query: 1024 KIISKVLSARLKSVMGSIIDQAQAAFVEGRLMAENI 1131
K+I+++L+ RL+ ++ +I AQ+AF+ GR +AEN+
Sbjct: 534 KVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENV 569
Score = 35.8 bits (81), Expect(3) = e-122
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 FTWTNNW----VWSKLDRAMANHTCLVENVDVQVNFFPIGCISDHSLCYLSIGQRQNTRS 169
FTW N V K+DR + N + + F SDH C + + +
Sbjct: 188 FTWWNKSHTTPVAKKIDRILVNDSWNAL-FPSSLGIFGSLDFSDHVSCGVVLEETSIKAK 246
Query: 170 RPFKFLNMWCSNEKFLNVVED 232
RPFKF N N FLN+V D
Sbjct: 247 RPFKFFNYLLKNLDFLNLVRD 267
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 299 bits (766), Expect(2) = e-122
Identities = 151/361 (41%), Positives = 218/361 (60%), Gaps = 6/361 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA ELIR Y RK +SPRC +KVD+RKAYD+V W FL ++ +GFP++F+GWI EC++T
Sbjct: 562 LASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTV 621
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
+ SV +NG F+ +KGLRQGDP+SP LF L +EYLSR ++ P+FNFHP+C +L
Sbjct: 622 SYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERL 681
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
ITHL FADDL++F R D S++ + F+ +GL + EKS I+ GV + +
Sbjct: 682 NITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETAREL 741
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
Q G LP RYLGVPL ++KL + PL+E I A LSYAGR QLI S
Sbjct: 742 ADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKS 801
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLW-----NSKQSPISWSQVCLQKNEGGLGL 2018
+L + +W IFP V+ + RKFLW +K++P++W+ + K+ GG +
Sbjct: 802 ILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAPVAWATIQRPKSRGGWNV 861
Query: 2019 RDLSKWNLALMAKTLWNIHAK-DSLWVKWVHHQYFNQEPLWERQPKKDDSALMKRMLHAR 2195
++ WN A M K LW I K D LWV+W+H Y ++ + + ++++++ AR
Sbjct: 862 INMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILTVNISNQTTWILRKIVKAR 921
Query: 2196 N 2198
+
Sbjct: 922 D 922
Score = 167 bits (424), Expect(2) = e-122
Identities = 94/264 (35%), Positives = 150/264 (56%), Gaps = 4/264 (1%)
Frame = +1
Query: 352 DRAKMALEEIRTIQLQDPTNQQLAAQVDQARRVAWNL---AEAESRFYFQLAKCKVLKEG 522
++ K +++ +Q QD + Q D A+ + +L + E Q ++ L++G
Sbjct: 298 EKVKNLRHQLQDLQSQDDFDHNDIMQTD-AKSIMNDLRHWSHIEDSILQQKSRITWLQQG 356
Query: 523 DRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVDFYQSLLGTRENTTP-VD 699
D +K F K N I + DGR + ++ E ++FY+ LLGTR +T VD
Sbjct: 357 DTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLLGTRASTLMGVD 416
Query: 700 PIVLDIGNKLSRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACFFKRAWPIIGDS 879
+ G LS + L R+V EI AL IG++K+PG DG+ A FFK++W I
Sbjct: 417 LNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQE 476
Query: 880 VIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYKIISKVLSARLK 1059
+ A +EFF + RM + IN +++L+PK H V +FRPIACC V+YKIISK+L+ R+K
Sbjct: 477 IYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMK 536
Query: 1060 SVMGSIIDQAQAAFVEGRLMAENI 1131
++G ++++AQ+ F+ GR +A+NI
Sbjct: 537 GIIGEVVNEAQSGFIPGRHIADNI 560
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 270 bits (690), Expect(3) = e-120
Identities = 144/361 (39%), Positives = 211/361 (58%), Gaps = 7/361 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA EL+ YN+K I+P LKVDLRKA+D+V WDF++ +R P KF WI EC++T
Sbjct: 468 LATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTA 527
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
+ SV +NG G F KGLRQGDP+SP LFVL +E S ++ +HP+ +L
Sbjct: 528 SFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQL 587
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
+I+HL FADD+++F G S+ ++ L+ FA +GL +N K++++ AG+ ++ +
Sbjct: 588 EISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSM 647
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
GF+ G LP RYLG+PL + KL ++ Y PL+EKI N LS+AGR QL++S
Sbjct: 648 A-SYGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLAS 706
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLWNSK-----QSPISWSQVCLQKNEGGLGL 2018
V+ GI FW++ F P + +I + +FLW+S+ + ++WSQVCL K EGG+GL
Sbjct: 707 VISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGL 766
Query: 2019 RDLSKWNLALMAKTLWNIHAKD-SLWVKW-VHHQYFNQEPLWERQPKKDDSALMKRMLHA 2192
R + N L + +W + + SLWV W H W + K DS K +L
Sbjct: 767 RRFAVSNRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRL 826
Query: 2193 R 2195
R
Sbjct: 827 R 827
Score = 175 bits (444), Expect(3) = e-120
Identities = 104/273 (38%), Positives = 153/273 (56%), Gaps = 5/273 (1%)
Frame = +1
Query: 328 YSHISSRVDRAKMALEEIRTIQLQDPTNQQLAAQVDQARRVAWN-LAEAESRFYFQLAKC 504
YS I R A AL +++ L P A + + R+ W LAEAE+ F++Q ++
Sbjct: 198 YSDIEKRTKEAHDALLLAQSVLLASPCPSNAAIEAETQRK--WRILAEAEASFFYQRSRV 255
Query: 505 KVLKEGDRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVDFYQSLLGTREN 684
L+EGD + +FH +A N I ++ G R E Q + V+++QS LG+ +
Sbjct: 256 NWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLENHCVEYFQSNLGSEQG 315
Query: 685 TTPVDPIVLDIGNKLSRD----QVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACFFK 852
+ DI N LS Q L + E+IK+A F++ NK+ GPDG++ FF
Sbjct: 316 LPLFEQA--DISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFC 373
Query: 853 RAWPIIGDSVIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYKII 1032
WPIIG V A EFF SG++LKQ N T + LIPK + +S+ DFRPI+C N +YK+I
Sbjct: 374 ACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVI 433
Query: 1033 SKVLSARLKSVMGSIIDQAQAAFVEGRLMAENI 1131
SK+L+ RLK + + I +Q+AF+ GRL EN+
Sbjct: 434 SKLLTDRLKDFLPAAISHSQSAFMPGRLFLENV 466
Score = 37.4 bits (85), Expect(3) = e-120
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = +2
Query: 2 FTWTNNW----VWSKLDRAMANHTCLVENVDVQVNFFPIGCISDHSLCYLSIGQRQNTRS 169
FTW N V KLDR + N + F SDHS C LS+
Sbjct: 85 FTWWNKRSRAPVAKKLDRILVNDKWTT-TFPSSLGLFGEPDFSDHSSCELSLMSASPRSK 143
Query: 170 RPFKFLNMWCSNEKFLNVV 226
+PF+F N +E FL+++
Sbjct: 144 KPFRFNNFLLKDENFLSLI 162
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 292 bits (747), Expect(2) = e-116
Identities = 150/366 (40%), Positives = 220/366 (60%), Gaps = 7/366 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA EL++ Y++ IS RC +K+D+ KA+D+V W FL+ V GFP +FI WI CITT
Sbjct: 577 LATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTA 636
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
+ SV +NG+L G+F+ +GLRQG +SP LFV+ ++ LS+ + + +F +HP+C +
Sbjct: 637 SFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTM 696
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
+THL+FADDL++ S G I+S+E +++ D FA+ +GL++++EKS ++ AG+ T +
Sbjct: 697 GLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEV 756
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
+ F G LP RYLG+PL ++L + PLLE++ + T+ LSYAGR LISS
Sbjct: 757 ADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISS 816
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLW-----NSKQSPISWSQVCLQKNEGGLGL 2018
VL I FWLA F P + + FLW NS ++ ISW VC K+EGGLGL
Sbjct: 817 VLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGL 876
Query: 2019 RDLSKWNLALMAKTLWNIHA-KDSLWVKWVHHQYFNQEPLWE-RQPKKDDSALMKRMLHA 2192
R L + N K +W I + +SLWVKWV WE +Q S + K++L
Sbjct: 877 RSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKY 936
Query: 2193 RNIMIT 2210
R + T
Sbjct: 937 REVAKT 942
Score = 156 bits (395), Expect(2) = e-116
Identities = 97/270 (35%), Positives = 143/270 (52%), Gaps = 4/270 (1%)
Frame = +1
Query: 334 HISSRVDRAKMALEEIRTIQLQDPTNQQLAAQVDQARRVAWN-LAEAESRFYFQLAKCKV 510
++S + + A L + + L +P++ +A + + A W+ +A E ++ Q +K
Sbjct: 308 NLSKKANEAYKILCAKQHVNLTNPSS--MAMEEENAAYSRWDRVAILEEKYLKQKSKLHW 365
Query: 511 LKEGDRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVDFYQSLLGTRENT- 687
+ GD+ TK FH A N I I DG +I AE F++ L N
Sbjct: 366 CQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREFLQLIPNDF 425
Query: 688 --TPVDPIVLDIGNKLSRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACFFKRAW 861
+ + + + S L R VT EEI+ LF + +KSPGPDGYT+ FFK W
Sbjct: 426 EGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATW 485
Query: 862 PIIGDSVIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYKIISKV 1041
IIGD A + FF G + K IN TI++LIPK + D+RPI+CCNVLYK+ISK+
Sbjct: 486 EIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKI 545
Query: 1042 LSARLKSVMGSIIDQAQAAFVEGRLMAENI 1131
++ RLK V+ I Q+AFV+ RL+ EN+
Sbjct: 546 IANRLKLVLPKFIAGNQSAFVKDRLLIENL 575
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 274 bits (700), Expect(2) = e-113
Identities = 137/341 (40%), Positives = 207/341 (60%), Gaps = 6/341 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA EL++ Y++ IS RC +K+D+ KA+D++ W FL V+ FP +FI WI C++T
Sbjct: 298 LATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTA 357
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
+ S+ +NG+L G+F+ +GLRQG +SP LFV+ ++ LSR + + F +HPRC L
Sbjct: 358 SFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYHPRCKTL 417
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
+THL FADDL++ + G I+SV+ +++ L+ FA GLK+ +EK+ ++ AGV Q +
Sbjct: 418 GLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLM 477
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
+ F G LP RYLG+PL ++L S Y+PL+++I + T+ LS+AGR LI+S
Sbjct: 478 SSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINS 537
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLW-----NSKQSPISWSQVCLQKNEGGLGL 2018
VL IT FW+ F P ++ IN LW N K++ +SW ++C K EGGLGL
Sbjct: 538 VLWSITNFWMNAFRLPRECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGL 597
Query: 2019 RDLSKWNLALMAKTLWN-IHAKDSLWVKWVHHQYFNQEPLW 2138
+ L + N K +W + +DSLWVKW +E W
Sbjct: 598 QSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFW 638
Score = 163 bits (412), Expect(2) = e-113
Identities = 94/211 (44%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Frame = +1
Query: 520 GDRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVDFYQSLLGTRENTTPVD 699
GDR K FH N I I RDG SQ I E V+++Q L T P D
Sbjct: 90 GDRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFL----QTIPAD 145
Query: 700 ---PIVLDIGNKL----SRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACFFKRA 858
V ++ N L S D L R VT EEIK +F++ +KSPGPDGYT+ F+K +
Sbjct: 146 YEGMCVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKAS 205
Query: 859 WPIIGDSVIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYKIISK 1038
W IIGD VI A + FFA G + K +N TI++LIPK + D+RPI+CCNVLYK ISK
Sbjct: 206 WEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISK 265
Query: 1039 VLSARLKSVMGSIIDQAQAAFVEGRLMAENI 1131
+L+ RLK ++ I Q+AFV+ RL+ EN+
Sbjct: 266 ILANRLKRILPKFIVGNQSAFVKDRLLIENV 296
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 270 bits (691), Expect(3) = e-112
Identities = 136/363 (37%), Positives = 211/363 (58%), Gaps = 7/363 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA EL++ Y+++ ++PRC +K+D+ KA+D+V W FLL + FP F WI+ CI+T
Sbjct: 874 LATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTA 933
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
SV +NG+L GFF +GLRQG +SP LFV+ + LS + + N +HP+C K+
Sbjct: 934 TFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKI 993
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
+THL FADDL++F G S+E ++ FA +GL++++EKS I+ AGV +D
Sbjct: 994 GLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQT 1053
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
+ F G LP RYLG+PL +++ + Y+PL+E + ++ TA SLSYAGR L++S
Sbjct: 1054 LSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNS 1113
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLW-----NSKQSPISWSQVCLQKNEGGLGL 2018
V+ I FW++ + PA + I FLW N K++ I+WS +C K EGGLG+
Sbjct: 1114 VIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGI 1173
Query: 2019 RDLSKWNLALMAKTLWN-IHAKDSLWVKWVHHQYFNQEPLWERQPKKD-DSALMKRMLHA 2192
+ L++ N K +W + + SLWV W+ + W + S + K++L
Sbjct: 1174 KSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKY 1233
Query: 2193 RNI 2201
R +
Sbjct: 1234 REL 1236
Score = 164 bits (415), Expect(3) = e-112
Identities = 102/270 (37%), Positives = 152/270 (56%), Gaps = 5/270 (1%)
Frame = +1
Query: 337 ISSRVDRAKMALEEIRTIQLQDPTNQQLAAQVDQARRVAWNLAEAESRFYFQLAKCKVLK 516
+ R A + L E + L +P+ + +A ++ +A +L+E E F Q +K +
Sbjct: 606 LPKRTREAHILLCEKQATTLANPSQETIAEEL-KAYTDWTHLSELEEGFLKQKSKLHWMN 664
Query: 517 EGDRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVDFYQSLLGTRENTTPV 696
GD +FH A+ +N I I + ++ +I E F+ L R++
Sbjct: 665 VGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLN-RQSGDFH 723
Query: 697 DPIVLDIGNKLS-----RDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACFFKRAW 861
V D+ N +S DQ + L R+VT EEI+ LFA+ +NKSPGPDGYT+ FFK W
Sbjct: 724 GISVEDLRNLMSYRCSVTDQ-NILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATW 782
Query: 862 PIIGDSVIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYKIISKV 1041
+ G IAA + FF G + K +N TI++LIPK D + D+RPI+CCNVLYK+ISK+
Sbjct: 783 SLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKI 842
Query: 1042 LSARLKSVMGSIIDQAQAAFVEGRLMAENI 1131
L+ RLK ++ S I Q Q+AFV+ RL+ EN+
Sbjct: 843 LANRLKLLLPSFILQNQSAFVKERLLMENV 872
Score = 23.5 bits (49), Expect(3) = e-112
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 170 RPFKFLNMWCSNEKFLNVVE 229
+PFKF+N+ +FL VVE
Sbjct: 546 KPFKFVNVLTKLPQFLPVVE 565
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 252 bits (644), Expect(3) = e-112
Identities = 138/326 (42%), Positives = 192/326 (58%), Gaps = 6/326 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA E++ YN K IS R LKVDLRKA+D+V WDF++ R P KF+ WI +CI+T
Sbjct: 572 LATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTP 631
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
SV +NG GFFK KGLRQGDP+SP LFVL +E S +K ++HP+ L
Sbjct: 632 YFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADL 691
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
I+HL FADD+++F G S+ + LD FA +GL VN +K+ ++ AG + I
Sbjct: 692 SISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTDEVEALAI 751
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
+ GF LP RYLG+PL + KL++S Y L+++ SLS+AGR QLI+S
Sbjct: 752 SHY-GFPISTLPIRYLGLPLMSRKLKISEY-ELVKRFRSW----AVKSLSFAGRVQLITS 805
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLWN-----SKQSPISWSQVCLQKNEGGLGL 2018
V+ G+ FW++ F + +I + +FLW+ SK + I+WS VCL KNEGG+GL
Sbjct: 806 VITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVGL 865
Query: 2019 RDLSKWNLALMAKTLWNIHA-KDSLW 2093
R + WN + +W + A D LW
Sbjct: 866 RRFTPWNKTFYLRFIWPLFADNDVLW 891
Score = 172 bits (435), Expect(3) = e-112
Identities = 102/275 (37%), Positives = 159/275 (57%), Gaps = 7/275 (2%)
Frame = +1
Query: 328 YSHISSRVDRAKMALEEIRTIQLQDPTNQQLAAQVDQARRVAWN-LAEAESRFYFQLAKC 504
YS I RV A + + I L +P+ +++ R+ W LA+AE F+ Q +
Sbjct: 298 YSDIEKRVSEAHAIVLHRQRITLTNPSVVHATLELEATRK--WQILAKAEESFFCQKSSI 355
Query: 505 KVLKEGDRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVD----FYQSLL- 669
L EGD T +FH +A N I + G R E+Q I + F++SLL
Sbjct: 356 SWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLC 415
Query: 670 GTR-ENTTPVDPIVLDIGNKLSRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACF 846
G EN+ + L + + S DQ++ L R +D +I+ A F++ NK+ GPDGY++ F
Sbjct: 416 GVEGENSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEF 475
Query: 847 FKRAWPIIGDSVIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYK 1026
FK W ++G V A +EFF SG++LKQ N T + LIPK +++ + DFRPI+C N LYK
Sbjct: 476 FKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYK 535
Query: 1027 IISKVLSARLKSVMGSIIDQAQAAFVEGRLMAENI 1131
+I+K+L++RLK ++ +I +Q+AF+ GRL++EN+
Sbjct: 536 VIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENV 570
Score = 32.3 bits (72), Expect(3) = e-112
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 FTWTNNW----VWSKLDRAMANHTCLVENVDVQVNFFPIGCISDHSLCYLSIGQRQNTRS 169
+TW N + K+DR + N NF SDHS C + +
Sbjct: 185 YTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPD-FSDHSSCEVVLDPAVLKAK 243
Query: 170 RPFKFLNMWCSNEKFLNVVED 232
RPF+F N + N FL ++ +
Sbjct: 244 RPFRFFNYFLHNPDFLQLIRE 264
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 249 bits (637), Expect(3) = e-111
Identities = 137/326 (42%), Positives = 190/326 (58%), Gaps = 6/326 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA E++ YN K IS R LKVDLRKA+D+V WDF++ R P KF+ WI +CI+T
Sbjct: 572 LATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTP 631
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
SV +NG GFFK KGLRQGDP+SP LFVL +E S +K +HP+ L
Sbjct: 632 YFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADL 691
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
I+HL FADD+++F G S+ + LD FA +GL VN +K+ ++ AG + I
Sbjct: 692 SISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTDEVEALAI 751
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
+ GF LP RYLG+PL + KL++S Y L+++ SLS+AGR QLI+S
Sbjct: 752 SHY-GFPISTLPIRYLGLPLMSRKLKISEY-ELVKRFRSW----AVKSLSFAGRVQLITS 805
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLWN-----SKQSPISWSQVCLQKNEGGLGL 2018
V+ G+ FW++ F + +I + +FLW+ SK + I+WS VCL KNEGG+ L
Sbjct: 806 VITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSGSIDASKGAKIAWSGVCLPKNEGGVAL 865
Query: 2019 RDLSKWNLALMAKTLWNIHA-KDSLW 2093
R + WN + +W + A D LW
Sbjct: 866 RRFTPWNKTFYLRFIWPLFADNDVLW 891
Score = 172 bits (435), Expect(3) = e-111
Identities = 102/275 (37%), Positives = 159/275 (57%), Gaps = 7/275 (2%)
Frame = +1
Query: 328 YSHISSRVDRAKMALEEIRTIQLQDPTNQQLAAQVDQARRVAWN-LAEAESRFYFQLAKC 504
YS I RV A + + I L +P+ +++ R+ W LA+AE F+ Q +
Sbjct: 298 YSDIEKRVSEAHAIVLHRQRITLTNPSVVHATLELEATRK--WQILAKAEESFFCQKSSI 355
Query: 505 KVLKEGDRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVD----FYQSLL- 669
L EGD T +FH +A N I + G R E+Q I + F++SLL
Sbjct: 356 SWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLC 415
Query: 670 GTR-ENTTPVDPIVLDIGNKLSRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACF 846
G EN+ + L + + S DQ++ L R +D +I+ A F++ NK+ GPDGY++ F
Sbjct: 416 GVEGENSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEF 475
Query: 847 FKRAWPIIGDSVIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYK 1026
FK W ++G V A +EFF SG++LKQ N T + LIPK +++ + DFRPI+C N LYK
Sbjct: 476 FKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYK 535
Query: 1027 IISKVLSARLKSVMGSIIDQAQAAFVEGRLMAENI 1131
+I+K+L++RLK ++ +I +Q+AF+ GRL++EN+
Sbjct: 536 VIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENV 570
Score = 32.3 bits (72), Expect(3) = e-111
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 FTWTNNW----VWSKLDRAMANHTCLVENVDVQVNFFPIGCISDHSLCYLSIGQRQNTRS 169
+TW N + K+DR + N NF SDHS C + +
Sbjct: 185 YTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPD-FSDHSSCEVVLDPAVLKAK 243
Query: 170 RPFKFLNMWCSNEKFLNVVED 232
RPF+F N + N FL ++ +
Sbjct: 244 RPFRFFNYFLHNPDFLQLIRE 264
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 257 bits (657), Expect(3) = e-111
Identities = 135/330 (40%), Positives = 197/330 (59%), Gaps = 6/330 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA EL+ ++ + R L+VD+ KAYDNV+W+FL+ +++ P FI WI CI++
Sbjct: 571 LASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKALDLPLVFIHWIWVCISSA 630
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
+ S+ NG+L GFF+GKKG+RQGDP+S LFVL ++ LS+ + + + FN HP C
Sbjct: 631 SYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAP 690
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
ITHL+FADD+++FS G S+ ++ LD F + +GL +N EK+E+ G + +
Sbjct: 691 IITHLSFADDVLVFSDGAASSIAGILTILDDFRQGSGLGINREKTELLLDGGNFARNRSL 750
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
G G LP RYLGVPL ++K+R Y PL+++IN TA LS+AGR QL+ S
Sbjct: 751 ADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLKS 810
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLW-----NSKQSPISWSQVCLQKNEGGLGL 2018
V+ FW ++F P L ++ FLW +++ + ISW+ VC K GGLGL
Sbjct: 811 VIYSTINFWASVFIFPNQCLQKLEQMCNAFLWSGAPNSARGAKISWNIVCSPKEAGGLGL 870
Query: 2019 RDLSKWNLALMAKTLWNIH-AKDSLWVKWV 2105
+ LS WN L K +W + + SLWV WV
Sbjct: 871 KRLSSWNRILALKLIWLLFTSAGSLWVSWV 900
Score = 159 bits (403), Expect(3) = e-111
Identities = 96/271 (35%), Positives = 145/271 (53%), Gaps = 3/271 (1%)
Frame = +1
Query: 328 YSHISSRVDRAKMALEEIRTIQLQDPTNQQLAAQVDQARRVAWNLAEAESRFYFQLAKCK 507
+S+I R ++ LE+I+ L P++ L + AR+ A A F+ Q ++ +
Sbjct: 300 FSNIQQRTAQSLTRLEDIQVELLTSPSDT-LFRREHVARKQWIFFAAALESFFRQKSRIR 358
Query: 508 VLKEGDRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVDFYQSLLGT-REN 684
L EGD T+FFH + N I + DG R E+ QI + +Y LLG EN
Sbjct: 359 WLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIPSEN 418
Query: 685 TTP--VDPIVLDIGNKLSRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACFFKRA 858
TP V+ I + + L ++EEI LF++ NK+PGPDG+ FF A
Sbjct: 419 VTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIEA 478
Query: 859 WPIIGDSVIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYKIISK 1038
W I+ SV+AA REFF SG + + N T I+LIPK + + FRP+ACC +YK+I++
Sbjct: 479 WAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITR 538
Query: 1039 VLSARLKSVMGSIIDQAQAAFVEGRLMAENI 1131
++S RLK + + Q F++GRL+ EN+
Sbjct: 539 IISRRLKLFIDQAVQANQVGFIKGRLLCENV 569
Score = 35.4 bits (80), Expect(3) = e-111
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +2
Query: 2 FTWTN----NWVWSKLDRAMANHTCLVENVDVQVNFFPIGCISDHSLCYLSIGQRQNTRS 169
FTW+N N + KLDRA+AN F P G SDH+ C + I +
Sbjct: 187 FTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGD-SDHAPCIILIDNQPPPSK 245
Query: 170 RPFKFLNMWCSNEKFL 217
+ FK+ + S+ +L
Sbjct: 246 KSFKYFSFLSSHPSYL 261
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 278 bits (710), Expect(2) = e-106
Identities = 141/363 (38%), Positives = 214/363 (58%), Gaps = 7/363 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA EL++ Y++ ISPRC +K+D+ KA+D+V W FLL + FP F WI+ CI+T
Sbjct: 150 LATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCISTA 209
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
SV +NG+L GFF K+GLRQG +SP LFV+ + LS + + N +HP+C KL
Sbjct: 210 TFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKL 269
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
+THL FADDL++F G +SVE ++ FA +GL +++EKS ++ AGV + +I
Sbjct: 270 SLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNNI 329
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
+ F G LP RYLG+PL +++ + Y+PLL+K+ ++ TA SLSYAGR LI+S
Sbjct: 330 LSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINS 389
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLW-----NSKQSPISWSQVCLQKNEGGLGL 2018
V+ ++ FW++ + PA + I FLW N K++ I+W+ +C K EGGLG+
Sbjct: 390 VIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGI 449
Query: 2019 RDLSKWNLALMAKTLWN-IHAKDSLWVKWVHHQYFNQEPLWERQPKKD-DSALMKRMLHA 2192
+ L + N K +W + + SLWV WV + W + S + K++L
Sbjct: 450 KSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLKY 509
Query: 2193 RNI 2201
R++
Sbjct: 510 RDV 512
Score = 138 bits (347), Expect(2) = e-106
Identities = 67/136 (49%), Positives = 91/136 (66%)
Frame = +1
Query: 724 KLSRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACFFKRAWPIIGDSVIAACREF 903
+ S D L R+VT EE + LFA+ NK PGPDGYT+ FFK W I G IAA + F
Sbjct: 13 RCSATDQDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSF 72
Query: 904 FASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYKIISKVLSARLKSVMGSIID 1083
F G + K +N TI++LIPK D + D+RPI+CCNV+YK+ISK+++ RLK ++ + I
Sbjct: 73 FIKGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFIL 132
Query: 1084 QAQAAFVEGRLMAENI 1131
Q Q+AFV RL+ EN+
Sbjct: 133 QNQSAFVRERLLIENV 148
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 272 bits (695), Expect(2) = e-105
Identities = 139/342 (40%), Positives = 195/342 (57%), Gaps = 7/342 (2%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA E+I Y++ PRC VD+ KA D V WDF++ ++ + P+ IGWI+ CI++
Sbjct: 398 LAQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISSA 457
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESR-DPNFNFHPRCGK 1490
SV +NG+L GFF ++GLRQGDP+SP LFV+ +E LS ++ P F +H RC +
Sbjct: 458 KFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRCDQ 517
Query: 1491 LKITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQH 1670
L ++HL FADDL++F GD SV L +F + LK N+ +S+IF AGV G
Sbjct: 518 LNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDS 577
Query: 1671 IVYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLIS 1850
++ T F G P RYLG+PL KLR+ +PLL++I + LS+AGR QLI
Sbjct: 578 VLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQ 637
Query: 1851 SVLQGITCFWLAIFPTPAMVLHRINAQVRKFLWNSKQS-----PISWSQVCLQKNEGGLG 2015
SVL I +W + P VL I ++R FLW S ++WS++CL K EGGLG
Sbjct: 638 SVLSSIQVYWASHLILPKKVLKDIEKRLRCFLWAGNCSGRAATKVAWSEICLPKCEGGLG 697
Query: 2016 LRDLSKWNLALMAKTLWN-IHAKDSLWVKWVHHQYFNQEPLW 2138
++DL WN ALM +WN + + + W WV W
Sbjct: 698 IKDLHCWNKALMISHIWNLVSSSSNFWTDWVKVYLLKGNSFW 739
Score = 139 bits (351), Expect(2) = e-105
Identities = 73/208 (35%), Positives = 113/208 (54%), Gaps = 1/208 (0%)
Frame = +1
Query: 511 LKEGDRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVDFYQSLLGTRENTT 690
LK+GD+ + FF ++ +N IA I R DG
Sbjct: 231 LKKGDKNSTFFFKTMTKHRNRNRIATINRSDGP--------------------------- 263
Query: 691 PVDPIVLDIGNKLSRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACFFKRAWPII 870
D L + T ++I++ F++ NKSPGPDG+ CFF++AW +I
Sbjct: 264 ---------------DLAKSLCNEFTHDDIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVI 308
Query: 871 GDSVIAAC-REFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYKIISKVLS 1047
GD+V+AA +EFF+ G +L ++N TII+L+PK + ++ DFRPI+CCN YKII+K+L+
Sbjct: 309 GDNVVAAAVKEFFSYGSLLMELNSTIITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLA 368
Query: 1048 ARLKSVMGSIIDQAQAAFVEGRLMAENI 1131
RLK + I+ +Q+ F+ GR + +NI
Sbjct: 369 NRLKGTLHLIVGPSQSTFIPGRRIGDNI 396
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 281 bits (718), Expect(2) = e-105
Identities = 150/366 (40%), Positives = 220/366 (60%), Gaps = 10/366 (2%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA +L++ Y++ IS RC +K+D+ KA D+V W FL+ + FP FI WIR CITT
Sbjct: 130 LATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCITTP 189
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSR---KVKGESRDPNFNFHPRC 1484
+ SV +NG+L GFF+ +GLRQG +SP LFV+ ++ LS+ KV G R +HP C
Sbjct: 190 SFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGR---IGYHPHC 246
Query: 1485 GKLKITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDL 1664
++ +THL+FADDL++ + G +S+E ++ D F++ +GLK+++EKS IF+AG+ T
Sbjct: 247 KRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSR 306
Query: 1665 QHIVYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQL 1844
+ F+ G LP RYLG+PL ++L Y PL+E+I + ++ LS+AGR L
Sbjct: 307 AQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAGRFNL 366
Query: 1845 ISSVLQGITCFWLAIFPTPAMVLHRINAQVRKFLW-----NSKQSPISWSQVCLQKNEGG 2009
ISS++ FWL+ F P + I FLW NSK++ ISW+QVC K+EGG
Sbjct: 367 ISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPKSEGG 426
Query: 2010 LGLRDLSKWNLALMAKTLWNIHAK-DSLWVKWVHHQYFNQEPLW-ERQPKKDDSALMKRM 2183
LGLR L + N K +W I + DSLWVKWV H +E W ++ S + K++
Sbjct: 427 LGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWIVKENANLGSWIWKKI 486
Query: 2184 LHARNI 2201
L R +
Sbjct: 487 LKYRGV 492
Score = 130 bits (328), Expect(2) = e-105
Identities = 62/127 (48%), Positives = 91/127 (71%)
Frame = +1
Query: 751 LARDVTDEEIKSALFAIGDNKSPGPDGYTACFFKRAWPIIGDSVIAACREFFASGRMLKQ 930
L R V+ EEIK LF++ ++KSPGPDG+T+ FFK +W I+G I A + FFA G + K
Sbjct: 2 LTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKG 61
Query: 931 INHTIISLIPKSDHTNSVGDFRPIACCNVLYKIISKVLSARLKSVMGSIIDQAQAAFVEG 1110
+N TI++LIPK + + D+RPI+CCNV+YK+ISK+L+ RLK ++ I Q++FV+
Sbjct: 62 VNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKD 121
Query: 1111 RLMAENI 1131
RL+ EN+
Sbjct: 122 RLLIENV 128
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 286 bits (732), Expect(2) = e-103
Identities = 145/341 (42%), Positives = 209/341 (61%), Gaps = 6/341 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA EL++ Y+++ IS R LK+D+ KA+D V W FL+ V++ P FI WI CI T
Sbjct: 724 LASELVKDYHKESISSRSALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTA 783
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
+ SV +NG+L GFF+ ++GLRQG +SP L+V+ + LS + + + ++HPRC +
Sbjct: 784 SFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNM 843
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
+THL FADD+++FS G KS++ + + FA + LK+++EKS IF AG+ I
Sbjct: 844 NLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSI 903
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
+ Q F+ G LP +YLG+PL +++ S Y PL+EKI + T LS+AGR QLI S
Sbjct: 904 LQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKS 963
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLW-----NSKQSPISWSQVCLQKNEGGLGL 2018
VL IT FWL++F P L I FLW N+K++ I+WS+VC K EGGLGL
Sbjct: 964 VLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGL 1023
Query: 2019 RDLSKWNLALMAKTLWNI-HAKDSLWVKWVHHQYFNQEPLW 2138
+ L + N + K +W I A+DSLWVKWV+ +E W
Sbjct: 1024 KPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFW 1064
Score = 120 bits (301), Expect(2) = e-103
Identities = 83/268 (30%), Positives = 123/268 (45%), Gaps = 2/268 (0%)
Frame = +1
Query: 334 HISSRVDRAKMALEEIRTI--QLQDPTNQQLAAQVDQARRVAWNLAEAESRFYFQLAKCK 507
H +S + R L+ ++ I L T L+ +V +A + E + Q +K
Sbjct: 513 HPTSAMFRFSKKLKGLKPILKSLGRSTLHNLSVRVAEA----YTSLYLEEGYLQQKSKLH 568
Query: 508 VLKEGDRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVDFYQSLLGTRENT 687
L GD+ K+FH+ K N I I DGR S
Sbjct: 569 WLDVGDKNNKYFHNSVKARVAMNSIREIQCTDGRVCTSHD-------------------- 608
Query: 688 TPVDPIVLDIGNKLSRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACFFKRAWPI 867
D+ +E +KSPGPDGYT FFK AWP+
Sbjct: 609 ------------------------DIKEEA----------HKSPGPDGYTVEFFKTAWPV 634
Query: 868 IGDSVIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYKIISKVLS 1047
+G ++ A + FF G + K IN TI++LI K + + D+RPI+CCNVLYKI+SK+++
Sbjct: 635 LGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEVSGMKDYRPISCCNVLYKIVSKLMA 694
Query: 1048 ARLKSVMGSIIDQAQAAFVEGRLMAENI 1131
RLK ++ + I Q+AF++ RLM EN+
Sbjct: 695 NRLKEILPASIAPNQSAFIKDRLMMENL 722
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 271 bits (694), Expect(2) = e-103
Identities = 145/363 (39%), Positives = 214/363 (58%), Gaps = 7/363 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA EL++ Y++ IS RC +K+D+ KA+D+V W FL + F FI WI CITT
Sbjct: 224 LATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTA 283
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
+ SV +NG L G+F+ K+GLRQG +SP LFV+ ++ LS+ + + F FHP+C +L
Sbjct: 284 SFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKFGFHPKCQRL 343
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
+THL+FADDL++ S G +S+E ++ D F + +GL++++EKS ++ AGV Q I
Sbjct: 344 GLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEI 403
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
+ F G LP RYLG+PL ++L + Y+PLLE+I + T S+AGR LI S
Sbjct: 404 AAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKS 463
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLW-----NSKQSPISWSQVCLQKNEGGLGL 2018
VL I FWLA F P + I+ FLW +S ++ ISW VC K EGGLGL
Sbjct: 464 VLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGL 523
Query: 2019 RDLSKWNLALMAKTLWNIHA-KDSLWVKWVHHQYFNQEPLWE-RQPKKDDSALMKRMLHA 2192
R+L + N K +W I + +SLW KWV ++ +W +Q S + +++L
Sbjct: 524 RNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKI 583
Query: 2193 RNI 2201
R++
Sbjct: 584 RDV 586
Score = 134 bits (337), Expect(2) = e-103
Identities = 77/206 (37%), Positives = 113/206 (54%), Gaps = 7/206 (3%)
Frame = +1
Query: 535 KFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVDFYQSLLGTRENTTPVDPIVLD 714
K FH KN I I DGR + I E F++ L P D + ++
Sbjct: 22 KTFHRAVIERETKNMIKEIYCTDGRVVQGDD-IMVEAEKFFKEFL----QLIPEDFVGVE 76
Query: 715 IGN-------KLSRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACFFKRAWPIIG 873
+ + + + L R+V+ EEIK+ LF++ +KSPGPDGYT+ F+K W IIG
Sbjct: 77 VRELQDLLQFRCTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIG 136
Query: 874 DSVIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCNVLYKIISKVLSAR 1053
+ FF G + K IN I++LIPK + D+RPI+CCNVLYK+ISK+++ R
Sbjct: 137 QEFTLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANR 196
Query: 1054 LKSVMGSIIDQAQAAFVEGRLMAENI 1131
LK ++ I + Q+AFV+ RL+ EN+
Sbjct: 197 LKLLLPRFIAENQSAFVKDRLLIENL 222
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 231 bits (590), Expect(3) = e-100
Identities = 129/325 (39%), Positives = 185/325 (56%), Gaps = 5/325 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA EL++ YNR+ I PR LKVDLRKA+D++ WDF++ ++ G P +F+ WI +CI+T
Sbjct: 524 LATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTP 583
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
SV +NG GFFK +GLRQG+P+SP LFVL +E S + + ++HP+ L
Sbjct: 584 TFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPL 643
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
I+HL FADD+++F G S+ + L+ FA +GL +N EK+ ++ AG L I
Sbjct: 644 SISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAG-----LDRI 698
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
T A KLR++ Y PLLEK+ + LS+AGR QLI+S
Sbjct: 699 EAST----------------IARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIAS 742
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLWN-----SKQSPISWSQVCLQKNEGGLGL 2018
V+ GI FW++ F P + RI A +FLW+ K + ++WS+VCL K EGG+GL
Sbjct: 743 VISGIINFWISTFILPKGCVKRIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGGVGL 802
Query: 2019 RDLSKWNLALMAKTLWNIHAKDSLW 2093
R ++ TLW+ K S W
Sbjct: 803 R-----RFTVLNTTLWD-GKKISFW 821
Score = 150 bits (380), Expect(3) = e-100
Identities = 92/275 (33%), Positives = 148/275 (53%), Gaps = 7/275 (2%)
Frame = +1
Query: 328 YSHISSRVDRAKMALEEIRTIQLQDPTNQQLAAQVDQARRVAWN-LAEAESRFYFQLAKC 504
+S++ RV A + + L DPT A +++ R+ W L +AE F+ Q ++
Sbjct: 250 FSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAALEMEAQRK--WLILVKAEESFFCQRSRV 307
Query: 505 KVLKEGDRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVDFYQSLLGTREN 684
+ EGD T +FH +A N I I +G + ++Q I ++++ +LLG
Sbjct: 308 TWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQLGIKEHCIEYFSNLLGGEVG 367
Query: 685 TTPV--DPIVLDIGNKLSRDQVDHLARDVTDEEIKSALFAIGDNKSPGPDGYTACFFKRA 858
+ + L + + S DQ LA + ++IKSA F+ NK+ GPDG+ FFK
Sbjct: 368 PPMLIQEDFDLLLPFRCSHDQKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKET 427
Query: 859 WPIIGDSVIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPIACCN----VLYK 1026
W +IG V A EFF S +LKQ N T + LIPK + + + DFRPI+C + LYK
Sbjct: 428 WSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYK 487
Query: 1027 IISKVLSARLKSVMGSIIDQAQAAFVEGRLMAENI 1131
+I+++L+ RL+ ++ +I Q+AF+ GR +AEN+
Sbjct: 488 VIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENV 522
Score = 35.4 bits (80), Expect(3) = e-100
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +2
Query: 2 FTWTNNW----VWSKLDRAMANHTCLVENVDVQVNFFPIGCISDHSLCYLSIGQRQNTRS 169
FTW N V KLDR + N + F SDH+ C + I +
Sbjct: 137 FTWWNKSATRPVAKKLDRILVNESWCSRFPSAYAVFGEPD-FSDHASCGVIINPLMHREK 195
Query: 170 RPFKFLNMWCSNEKFLNVVEDI 235
RPF+F N N F+++V ++
Sbjct: 196 RPFRFYNFLLQNPDFISLVGEL 217
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 270 bits (690), Expect(2) = e-100
Identities = 139/363 (38%), Positives = 212/363 (58%), Gaps = 7/363 (1%)
Frame = +3
Query: 1134 LA*ELIRSYNRKRISPRCFLKVDLRKAYDNVSWDFLLEVMRGYGFPTKFIGWIRECITTT 1313
LA EL++ Y++ ISPRC +K+D+ KA+D+V W FLL + FP KF WI+ CI+T
Sbjct: 719 LATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEKFRHWIKLCISTA 778
Query: 1314 A*SVTINGQLHGFFKGKKGLRQGDPISPSLFVLYLEYLSRKVKGESRDPNFNFHPRCGKL 1493
SV +N + GFF K+GLRQG +SP LFV+ + LS + + N +HP+C KL
Sbjct: 779 TFSVQVNSEQAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKKL 838
Query: 1494 KITHLAFADDLILFSRGDIKSVEILMRCLDHFAETAGLKVNIEKSEIFTAGVLGTDLQHI 1673
+THL FADDL++F G +SVE ++ FA +GL +++EKS ++ A V + +I
Sbjct: 839 SLTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEKSTLYLAEVSELNRNNI 898
Query: 1674 VYQTGFQKGVLPCRYLGVPLAAEKLRVSFYTPLLEKINGHVNG*TASSLSYAGRCQLISS 1853
+ F G LP RYLG PL +++ + Y+PLL+K+ ++ TA SLSYAGR LI+S
Sbjct: 899 LSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALINS 958
Query: 1854 VLQGITCFWLAIFPTPAMVLHRINAQVRKFLW-----NSKQSPISWSQVCLQKNEGGLGL 2018
V+ ++ FW++ + PA + I FLW N K++ I+W+ +C K EGGLG+
Sbjct: 959 VIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKLKQEGGLGI 1018
Query: 2019 RDLSKWNLALMAKTLWN-IHAKDSLWVKWVHHQYFNQEPLWERQPKKD-DSALMKRMLHA 2192
+ L + N K +W + + SLWV WV + W + S + K++L+
Sbjct: 1019 KSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLNY 1078
Query: 2193 RNI 2201
R++
Sbjct: 1079 RDV 1081
Score = 124 bits (310), Expect(2) = e-100
Identities = 76/223 (34%), Positives = 114/223 (51%), Gaps = 3/223 (1%)
Frame = +1
Query: 472 ESRFYFQLAKCKVLKEGDRCTKFFHDLAKRNAKKNFIANITRRDGRRTESQSQIAAEFVD 651
E + Q +K +K GDR +FH A+ +N I I +G ++ +I E
Sbjct: 525 EEGYMKQKSKLHWMKVGDRNNSYFHKAAQVRRMQNSIREIQGPNGVVLQTSEEIKGEAER 584
Query: 652 FYQSLLGTRENT---TPVDPIVLDIGNKLSRDQVDHLARDVTDEEIKSALFAIGDNKSPG 822
F+Q L + + V+ + + + S D L R+VT EEI+ LFA+ NKSPG
Sbjct: 585 FFQEFLNHQPSDFQGMTVEELQNLMSFRCSATDQDMLTREVTSEEIQKVLFAMPSNKSPG 644
Query: 823 PDGYTACFFKRAWPIIGDSVIAACREFFASGRMLKQINHTIISLIPKSDHTNSVGDFRPI 1002
PDGYT ++N TI++LIPK D + D+RPI
Sbjct: 645 PDGYT------------------------------RLNATILALIPKKDEATLMRDYRPI 674
Query: 1003 ACCNVLYKIISKVLSARLKSVMGSIIDQAQAAFVEGRLMAENI 1131
+CCNV+YK+ISK+++ RLK ++ + I Q Q+AFV RL+ EN+
Sbjct: 675 SCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLMENV 717