BLASTX nr result

ID: Rauwolfia21_contig00020687 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00020687
         (251 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004243370.1| PREDICTED: zinc finger CCCH domain-containin...    79   5e-13
ref|XP_006372730.1| zinc finger family protein [Populus trichoca...    69   5e-10
ref|XP_002328049.1| predicted protein [Populus trichocarpa]            69   5e-10
gb|EPS67507.1| hypothetical protein M569_07268 [Genlisea aurea]        67   3e-09
gb|EOX99481.1| Zinc finger C-x8-C-x5-C-x3-H type family protein,...    65   1e-08
gb|EXB44627.1| hypothetical protein L484_010318 [Morus notabilis]      60   4e-07
ref|XP_002309749.2| zinc finger family protein [Populus trichoca...    60   4e-07

>ref|XP_004243370.1| PREDICTED: zinc finger CCCH domain-containing protein 2-like
           [Solanum lycopersicum]
          Length = 417

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 51/101 (50%), Positives = 57/101 (56%), Gaps = 25/101 (24%)
 Frame = -1

Query: 245 SSHSTTIN-SGNLPWLDVNFNG---DDQQQFILSPSTP--------------------SP 138
           S+HS ++N  GNLPWLDVNFN    DDQQQF+LSPSTP                    SP
Sbjct: 317 STHSHSVNFDGNLPWLDVNFNNSSYDDQQQFLLSPSTPSPSPISNSRTKFYAREFPSASP 376

Query: 137 VSSKFHQHGKFLCKNVIEENKYEDNGLA-GPDLGWVNDLLT 18
           VSS      + L  N      Y DNGL+ GPDLGWVNDLLT
Sbjct: 377 VSSSRLSFVEELNNNNGTNRFYSDNGLSGGPDLGWVNDLLT 417


>ref|XP_006372730.1| zinc finger family protein [Populus trichocarpa]
           gi|550319378|gb|ERP50527.1| zinc finger family protein
           [Populus trichocarpa]
          Length = 382

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 9/84 (10%)
 Frame = -1

Query: 245 SSHSTTINSGNLPW-LDVNFNGDDQQQFILSPSTPSPVSSKFH-----QHGKFLCKNVIE 84
           ++H+  +NS   PW +DV+F+G+DQ QFILSPSTP+P S  F+       G F+   + +
Sbjct: 299 TNHNRNVNS-TTPWNIDVSFSGEDQPQFILSPSTPTPSSKFFNGDCSSNKGLFVDDKIND 357

Query: 83  ENKYEDNGLA---GPDLGWVNDLL 21
            N   D GLA    PDLGWVN+LL
Sbjct: 358 HNNIGDGGLACTSDPDLGWVNELL 381


>ref|XP_002328049.1| predicted protein [Populus trichocarpa]
          Length = 382

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 9/84 (10%)
 Frame = -1

Query: 245 SSHSTTINSGNLPW-LDVNFNGDDQQQFILSPSTPSPVSSKFH-----QHGKFLCKNVIE 84
           ++H+  +NS   PW +DV+F+G+DQ QFILSPSTP+P S  F+       G F+   + +
Sbjct: 299 TNHNRNVNS-TTPWNIDVSFSGEDQPQFILSPSTPTPSSKFFNGDCSSNKGLFVDDKIND 357

Query: 83  ENKYEDNGLA---GPDLGWVNDLL 21
            N   D GLA    PDLGWVN+LL
Sbjct: 358 HNNIGDGGLACTSDPDLGWVNELL 381


>gb|EPS67507.1| hypothetical protein M569_07268 [Genlisea aurea]
          Length = 343

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 34/66 (51%), Positives = 44/66 (66%)
 Frame = -1

Query: 215 NLPWLDVNFNGDDQQQFILSPSTPSPVSSKFHQHGKFLCKNVIEENKYEDNGLAGPDLGW 36
           NLPWLDVNFN +DQ QF+LSP+  SP ++   +   F   +    +  E+  L+GPDLGW
Sbjct: 279 NLPWLDVNFNFEDQPQFVLSPAPISPPTT-LRRGNLFSIDDGGRYHGGENGNLSGPDLGW 337

Query: 35  VNDLLT 18
           VNDLLT
Sbjct: 338 VNDLLT 343


>gb|EOX99481.1| Zinc finger C-x8-C-x5-C-x3-H type family protein, putative
           [Theobroma cacao]
          Length = 365

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
 Frame = -1

Query: 251 EPSSHSTTINS--GNLPWLDVNFNGDDQQQFILSPSTPSPVSSKFHQHGKFL--CKNVIE 84
           E SS    +N+   N+ WLD +FNG+DQQQF+LSPS PSP  S     G++    K +  
Sbjct: 286 EVSSPVAGVNNLNANISWLDASFNGEDQQQFVLSPSRPSPSES-----GEYFGATKEIGG 340

Query: 83  ENKYEDNGLA---GPDLGWVNDLL 21
                +NG+A    PDLGWVN+LL
Sbjct: 341 YENLNENGVATDPDPDLGWVNELL 364


>gb|EXB44627.1| hypothetical protein L484_010318 [Morus notabilis]
          Length = 136

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 37/84 (44%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
 Frame = -1

Query: 242 SHSTTINSGNLPWLDV---NFNGDDQQQFILSPSTP------SPVSSKFHQHGKFLCKNV 90
           S    I S  LPWLDV   +  GDDQQQFILSPSTP      S  ++ F+++     KN 
Sbjct: 52  SKRNIITSSGLPWLDVTTTSTTGDDQQQFILSPSTPNNNQFGSSENNFFNRYNSSTAKNR 111

Query: 89  IEENKYEDN-GLAGPDLGWVNDLL 21
              N  E++   + PD+GWVN+LL
Sbjct: 112 AVMNAGENSRSNSDPDIGWVNELL 135


>ref|XP_002309749.2| zinc finger family protein [Populus trichocarpa]
           gi|550333868|gb|EEE90199.2| zinc finger family protein
           [Populus trichocarpa]
          Length = 383

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 9/77 (11%)
 Frame = -1

Query: 224 NSGNLPW-LDVNFNGDDQQQFILSPSTPSPVSSKFHQ-----HGKFLCKNVIEENKYEDN 63
           N  N P  +DV+F+G+D+ QFILSPSTP+P SS F++      G F+  ++ + N + + 
Sbjct: 307 NVNNTPRNIDVSFDGEDEPQFILSPSTPTPSSSFFNRDCSSNKGLFI-DDIHKINDHNNG 365

Query: 62  GLA---GPDLGWVNDLL 21
           GLA    PDLGWVN+LL
Sbjct: 366 GLACTPDPDLGWVNELL 382


Top