BLASTX nr result

ID: Rauwolfia21_contig00018292 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00018292
         (742 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006348685.1| PREDICTED: pentatricopeptide repeat-containi...    60   8e-07
ref|XP_004239461.1| PREDICTED: pentatricopeptide repeat-containi...    60   8e-07
ref|XP_002267057.2| PREDICTED: pentatricopeptide repeat-containi...    59   1e-06
emb|CBI36299.3| unnamed protein product [Vitis vinifera]               59   1e-06
ref|XP_004152207.1| PREDICTED: pentatricopeptide repeat-containi...    57   6e-06

>ref|XP_006348685.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80150,
           mitochondrial-like isoform X1 [Solanum tuberosum]
           gi|565363941|ref|XP_006348686.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g80150,
           mitochondrial-like isoform X2 [Solanum tuberosum]
          Length = 405

 Score = 60.1 bits (144), Expect = 8e-07
 Identities = 33/71 (46%), Positives = 44/71 (61%)
 Frame = +3

Query: 528 MLSPRLVRKLGTASHIATVTIPSAETAXXXXXXXXXXXQEPLEFDEPALIKLKKERDPEK 707
           ML+ RLVR+ GT S +A V+      A           ++ ++ DEPAL +LKKE++PEK
Sbjct: 1   MLTLRLVRRFGTRSRLAAVS-----GAGNTSKKTLVSKRKSVKVDEPALFRLKKEKNPEK 55

Query: 708 LFSLFKTNAHN 740
           LF LFK NAHN
Sbjct: 56  LFQLFKENAHN 66


>ref|XP_004239461.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80150,
           mitochondrial-like [Solanum lycopersicum]
          Length = 405

 Score = 60.1 bits (144), Expect = 8e-07
 Identities = 33/71 (46%), Positives = 44/71 (61%)
 Frame = +3

Query: 528 MLSPRLVRKLGTASHIATVTIPSAETAXXXXXXXXXXXQEPLEFDEPALIKLKKERDPEK 707
           ML+ RLVR+ GT S +A V+      A           ++ ++ DEPAL +LKKE++PEK
Sbjct: 1   MLTLRLVRRFGTRSRLAAVSC-----AGNTSKKALVSKRKRVKVDEPALFRLKKEKNPEK 55

Query: 708 LFSLFKTNAHN 740
           LF LFK NAHN
Sbjct: 56  LFQLFKENAHN 66


>ref|XP_002267057.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80150,
           mitochondrial-like [Vitis vinifera]
          Length = 405

 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 35/71 (49%), Positives = 42/71 (59%)
 Frame = +3

Query: 528 MLSPRLVRKLGTASHIATVTIPSAETAXXXXXXXXXXXQEPLEFDEPALIKLKKERDPEK 707
           MLS R +R+   A+ I  +  P AET             +PLE  EPAL+KLK ERDPE+
Sbjct: 1   MLSLRPIRRFCHAAAITAIA-PVAETVTSAKSNCIKKPDKPLE--EPALVKLKAERDPER 57

Query: 708 LFSLFKTNAHN 740
           LF LFK NAHN
Sbjct: 58  LFQLFKANAHN 68


>emb|CBI36299.3| unnamed protein product [Vitis vinifera]
          Length = 353

 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 35/71 (49%), Positives = 42/71 (59%)
 Frame = +3

Query: 528 MLSPRLVRKLGTASHIATVTIPSAETAXXXXXXXXXXXQEPLEFDEPALIKLKKERDPEK 707
           MLS R +R+   A+ I  +  P AET             +PLE  EPAL+KLK ERDPE+
Sbjct: 1   MLSLRPIRRFCHAAAITAIA-PVAETVTSAKSNCIKKPDKPLE--EPALVKLKAERDPER 57

Query: 708 LFSLFKTNAHN 740
           LF LFK NAHN
Sbjct: 58  LFQLFKANAHN 68


>ref|XP_004152207.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80150,
           mitochondrial-like [Cucumis sativus]
           gi|449484169|ref|XP_004156805.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g80150,
           mitochondrial-like [Cucumis sativus]
          Length = 399

 Score = 57.0 bits (136), Expect = 6e-06
 Identities = 36/71 (50%), Positives = 41/71 (57%)
 Frame = +3

Query: 528 MLSPRLVRKLGTASHIATVTIPSAETAXXXXXXXXXXXQEPLEFDEPALIKLKKERDPEK 707
           MLS R +R+     H ATV IPS +T            Q     +EPAL+KLK ERDPEK
Sbjct: 1   MLSLRPIRRF---CHAATV-IPSTDTTAAVLNHV----QNSKSLEEPALVKLKAERDPEK 52

Query: 708 LFSLFKTNAHN 740
           LF LFK NAHN
Sbjct: 53  LFHLFKANAHN 63


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