BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00016083
         (2037 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006348094.1| PREDICTED: RNA pseudouridine synthase 6, chl...   641   0.0  
gb|EMJ14726.1| hypothetical protein PRUPE_ppa020640mg [Prunus pe...   645   0.0  
ref|XP_004232727.1| PREDICTED: RNA pseudourine synthase 6, chlor...   639   0.0  
gb|EOY28643.1| Pseudouridine synthase family protein [Theobroma ...   644   0.0  
ref|XP_003541622.2| PREDICTED: RNA pseudouridine synthase 6, chl...   643   0.0  
ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor...   642   0.0  
ref|XP_002304926.2| pseudouridine synthase family protein [Popul...   641   0.0  
ref|XP_004293270.1| PREDICTED: RNA pseudourine synthase 6, chlor...   639   e-180
ref|XP_003547248.2| PREDICTED: RNA pseudouridine synthase 6, chl...   638   e-180
gb|ESW19737.1| hypothetical protein PHAVU_006G151200g [Phaseolus...   638   e-180
ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [...   638   e-180
ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citr...   635   e-179
ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chl...   631   e-178
ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [...   621   e-175
ref|XP_004486127.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   619   e-174
ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   605   e-170
ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chlor...   605   e-170
ref|XP_006858058.1| hypothetical protein AMTR_s00062p00043970 [A...   602   e-169
ref|XP_006284907.1| hypothetical protein CARUB_v10006203mg [Caps...   596   e-167
ref|XP_003626283.1| RNA pseudourine synthase [Medicago truncatul...   591   e-166

>ref|XP_006348094.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Solanum tuberosum] gi|565362724|ref|XP_006348095.1|
            PREDICTED: RNA pseudouridine synthase 6,
            chloroplastic-like isoform X2 [Solanum tuberosum]
          Length = 483

 Score =  641 bits (1653), Expect(2) = 0.0
 Identities = 300/397 (75%), Positives = 337/397 (84%)
 Frame = -3

Query: 1693 GYPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALV 1514
            G+ +YGRL+PCP QN PPRVEHLVV + GPVLEY+CK LDLPPLYV DLI FGAVY ALV
Sbjct: 87   GHLRYGRLMPCPLQNSPPRVEHLVVTKEGPVLEYICKALDLPPLYVEDLIQFGAVYYALV 146

Query: 1513 CPKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRV 1334
            CPKPPPTA+PEQ+K YEEVT PS+LR+RTSIKGKTVREAQ+TF+IT  DE VE GTYLRV
Sbjct: 147  CPKPPPTASPEQIKVYEEVTDPSILRQRTSIKGKTVREAQKTFKITRADEIVEAGTYLRV 206

Query: 1333 HVHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKA 1154
            HVHPKRFPRCY+IDW+SRIIAVT+ YVVLDKPAGTSVGGTTDNIEESCATF +R LG  A
Sbjct: 207  HVHPKRFPRCYDIDWKSRIIAVTDDYVVLDKPAGTSVGGTTDNIEESCATFATRALGFSA 266

Query: 1153 PLLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRP 974
            PLLTTHQIDNCTEGCVVLARSKEYCS FHGKIRE            APVPIG++THYMRP
Sbjct: 267  PLLTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAAAPVPIGILTHYMRP 326

Query: 973  INMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINL 794
            INMAPRL+S+DFV GW LCQLEVL+CKKVPWP+  +Q+ Y+ EDCGW  +DFAYEC+INL
Sbjct: 327  INMAPRLVSEDFVKGWLLCQLEVLECKKVPWPSSEIQRTYNLEDCGWALKDFAYECQINL 386

Query: 793  LTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEE 614
            LTGRTHQIRAQLAA  AP+VGDSMYMPAAIA++V PG NPF K  K  +N ++ +  ++E
Sbjct: 387  LTGRTHQIRAQLAACSAPVVGDSMYMPAAIAEIVCPGSNPFGKNKKLYSNENDKSLAIDE 446

Query: 613  WIAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            WIAQHGKEPSVA+GLQACQI WD+G H Y A  PWWR
Sbjct: 447  WIAQHGKEPSVAVGLQACQISWDDGQHCYGARLPWWR 483



 Score = 35.4 bits (80), Expect(2) = 0.0
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -2

Query: 1901 WASNYRRSFLGPLILARTLAYNPTGF-KNYHQLLNFGTGNCHGRSWIRSFCFEAVALSDV 1725
            W  N+R  F  P  +  T A   +   KN +        +C      RSF  ++ ALSD+
Sbjct: 22   WTPNWRNGFFSPFNMVHTFASTRSRLLKNKNHYKRLALSSCS-----RSFSCQSTALSDI 76

Query: 1724 NSSPYISSVNG 1692
            +S+ +  S NG
Sbjct: 77   SSTSHTVSSNG 87


>gb|EMJ14726.1| hypothetical protein PRUPE_ppa020640mg [Prunus persica]
          Length = 477

 Score =  645 bits (1663), Expect(2) = 0.0
 Identities = 296/397 (74%), Positives = 340/397 (85%)
 Frame = -3

Query: 1693 GYPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALV 1514
            GYP+Y RLLPCPS NGPPRVEHLVV EGGPVLEY+CKTLDLPP +VADLIHFGAVY ALV
Sbjct: 79   GYPEYTRLLPCPSHNGPPRVEHLVVSEGGPVLEYICKTLDLPPQFVADLIHFGAVYYALV 138

Query: 1513 CPKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRV 1334
            CPKPPPTATPEQ++ ++EVTAPSVL+ R SIKGKTVREAQ+TFRITH DEFVE GTYLRV
Sbjct: 139  CPKPPPTATPEQMRVFKEVTAPSVLKNRASIKGKTVREAQKTFRITHADEFVEAGTYLRV 198

Query: 1333 HVHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKA 1154
            HVHPKRFPRCY+IDW+SRIIAV+E +VVLDKPAGT+VGGTTDNIEESCATF +R LGL  
Sbjct: 199  HVHPKRFPRCYDIDWKSRIIAVSEEFVVLDKPAGTTVGGTTDNIEESCATFATRALGLTT 258

Query: 1153 PLLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRP 974
            PL TTHQIDNCTEGCVVLAR+KEYCS FHGKIRE            APVP G+ITHYMRP
Sbjct: 259  PLNTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALAAAPVPTGIITHYMRP 318

Query: 973  INMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINL 794
            IN+APRLIS+DF++ W LCQLEV++CK++PWP  +++++Y  EDCGWP +D+AYECKINL
Sbjct: 319  INVAPRLISEDFIERWSLCQLEVMECKEIPWPNAVVEEKYCVEDCGWPSKDYAYECKINL 378

Query: 793  LTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEE 614
            LTGRTHQ+RAQLAA GAPIVGDSMYMPAA+A+M +PG+NPF +  K     ++    V E
Sbjct: 379  LTGRTHQVRAQLAACGAPIVGDSMYMPAAVAEMESPGLNPFGQYKKHYTTENDKETAVAE 438

Query: 613  WIAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            WIA+HGKEP+VAIGLQACQI WD+G H +EA  PWWR
Sbjct: 439  WIARHGKEPNVAIGLQACQISWDDGKHTFEARAPWWR 475



 Score = 26.9 bits (58), Expect(2) = 0.0
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = -2

Query: 1895 SNYRRSFLGPLILARTLAYNPTGFKNYHQLLNFGTGNCHGRSWIRSFCFEAVALSD-VNS 1719
            +N  RSF  P+ L RTLA        +          C  RS  +   F   +L   V  
Sbjct: 11   ANGCRSFSAPVALVRTLALTHVALSEHANNYKHVKVACFSRSSKKRTTFACESLKQGVTQ 70

Query: 1718 SPYISSVNG 1692
               +SSVNG
Sbjct: 71   PTSVSSVNG 79


>ref|XP_004232727.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Solanum
            lycopersicum]
          Length = 448

 Score =  639 bits (1648), Expect(2) = 0.0
 Identities = 299/397 (75%), Positives = 337/397 (84%)
 Frame = -3

Query: 1693 GYPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALV 1514
            G+ +YGRL+PCP QN PPRVEHLVV + GPV+EY+CK LDLPPLYV DLI FGAVY ALV
Sbjct: 52   GHLRYGRLMPCPLQNSPPRVEHLVVTKEGPVVEYICKALDLPPLYVEDLIQFGAVYYALV 111

Query: 1513 CPKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRV 1334
            CPKPPPTA+PEQ+K YEEVT PSVLRKRTSIKGKTVREAQ+TF+IT  DE VE GTYLRV
Sbjct: 112  CPKPPPTASPEQIKVYEEVTDPSVLRKRTSIKGKTVREAQKTFKITRADEIVEAGTYLRV 171

Query: 1333 HVHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKA 1154
            HVHPKRFPRCY+IDW+SRIIAVT+ YVVLDKPAGTSVGGTTDNIEESCATF +R LG  A
Sbjct: 172  HVHPKRFPRCYDIDWKSRIIAVTDDYVVLDKPAGTSVGGTTDNIEESCATFATRALGFSA 231

Query: 1153 PLLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRP 974
            PLLTTHQIDNCTEGCVVLARSKEYCS FHGKIRE            APVPIG++THYMRP
Sbjct: 232  PLLTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVRKLYLALAAAPVPIGILTHYMRP 291

Query: 973  INMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINL 794
            INMAPRL+S+DFV GW LCQLEVL+C+KVPWP+  +Q+ Y+ EDCGW  +D+AYEC+INL
Sbjct: 292  INMAPRLVSRDFVKGWLLCQLEVLECQKVPWPSSEIQRTYNLEDCGWALKDYAYECQINL 351

Query: 793  LTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEE 614
            LTGRTHQIRAQLAA  AP+VGDSMYMPAAIA++V PG NPF K  K  +N ++ +  ++E
Sbjct: 352  LTGRTHQIRAQLAACSAPVVGDSMYMPAAIAEIVCPGSNPFGKNKKLYSNENDKSLAIDE 411

Query: 613  WIAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            WIAQHGKEPSVA+GLQACQI WD+G H Y A  PWWR
Sbjct: 412  WIAQHGKEPSVAVGLQACQISWDDGQHCYGARMPWWR 448



 Score = 30.0 bits (66), Expect(2) = 0.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 1763 RSFCFEAVALSDVNSSPYISSVNG 1692
            +SFC ++ ALSD+NS+ +  S NG
Sbjct: 29   KSFCCQSTALSDINSTSHTVSSNG 52


>gb|EOY28643.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 491

 Score =  644 bits (1662), Expect = 0.0
 Identities = 301/397 (75%), Positives = 341/397 (85%), Gaps = 1/397 (0%)
 Frame = -3

Query: 1690 YPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALVC 1511
            YP+Y RLLPCPS NGPPRVEHLVV EGGPVLEY+CK LDLPP++VADLIHFGAVY ALVC
Sbjct: 93   YPEYHRLLPCPSHNGPPRVEHLVVSEGGPVLEYICKALDLPPMFVADLIHFGAVYYALVC 152

Query: 1510 PKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRVH 1331
            P+PPP+ATPEQ++ ++EVTAPSVL KRTSI+GKTVREAQ+TFRITH D+FVE GTYLRVH
Sbjct: 153  PQPPPSATPEQIRIFKEVTAPSVLSKRTSIRGKTVREAQKTFRITHVDQFVEAGTYLRVH 212

Query: 1330 VHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKAP 1151
            VHPKRFPRCYEIDW+SRIIAVT+SYVVLDKPAGTSVGGTTDNIEESCATF +R LG   P
Sbjct: 213  VHPKRFPRCYEIDWKSRIIAVTDSYVVLDKPAGTSVGGTTDNIEESCATFANRALGFSTP 272

Query: 1150 LLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRPI 971
            L TTHQIDNCTEGCVVLAR+KEYCS FHGKIRE            AP+PIGVITHYMRPI
Sbjct: 273  LKTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALTAAPLPIGVITHYMRPI 332

Query: 970  NMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINLL 791
            NMAPRL+S+DF+ GW+LCQLEV++CKKVPWP  ++Q+ Y  ED GWP +D AYECKINLL
Sbjct: 333  NMAPRLVSEDFIKGWYLCQLEVMECKKVPWPDYVIQENYCIEDSGWPLKDHAYECKINLL 392

Query: 790  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNA-NGSEMAQKVEE 614
            TGRTHQ+RAQLAA GAPI+GDSMYMP  IA++ NPG+NPF K  K  + N  E+A  + E
Sbjct: 393  TGRTHQVRAQLAACGAPILGDSMYMPPTIAEIANPGLNPFGKYKKHTSENDKEIA--ITE 450

Query: 613  WIAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            WI+Q GKEPSVAIGLQACQI WD+G+HFY+A  PWWR
Sbjct: 451  WISQFGKEPSVAIGLQACQISWDDGEHFYKARSPWWR 487


>ref|XP_003541622.2| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Glycine max]
          Length = 478

 Score =  643 bits (1658), Expect = 0.0
 Identities = 295/396 (74%), Positives = 334/396 (84%)
 Frame = -3

Query: 1690 YPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALVC 1511
            +PKY RLLPCPS   PPR+EHLV+ EGGPVLE +CK LDLPPLYV+DLI FGAVY ALVC
Sbjct: 82   FPKYDRLLPCPSHKNPPRIEHLVISEGGPVLELICKALDLPPLYVSDLIQFGAVYYALVC 141

Query: 1510 PKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRVH 1331
            P+PPP AT EQ++ ++EVT PSVLRKR SIKGKTVREAQ+TFR+TH D+FVEPGTYLRVH
Sbjct: 142  PQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEPGTYLRVH 201

Query: 1330 VHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKAP 1151
            VHPKRFPR YEIDWRSRIIAV ESYVVLDKPAGTSVGGTTDNIEESCATF +R LG+  P
Sbjct: 202  VHPKRFPRSYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGMTTP 261

Query: 1150 LLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRPI 971
            L+TTHQIDNCTEGCVVLAR+K+YCS FHGKIRE            +P+P G+ITHYMRPI
Sbjct: 262  LMTTHQIDNCTEGCVVLARTKDYCSIFHGKIREKKVKKLYLALAASPLPTGIITHYMRPI 321

Query: 970  NMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINLL 791
            NMAPRLIS+DF+ GWHLCQLEVL+C+K+PWPT  +Q +Y  EDCGWP QD+AYECKINLL
Sbjct: 322  NMAPRLISEDFIKGWHLCQLEVLECRKIPWPTTAIQDKYCVEDCGWPSQDYAYECKINLL 381

Query: 790  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEEW 611
            TG+THQIRAQ AA  AP++GDSMYMPAAIA + NPG+NPF K  K  ++ SE    V  W
Sbjct: 382  TGKTHQIRAQFAAYKAPLIGDSMYMPAAIADVSNPGLNPFGKYKKDFSSESEKETAVVNW 441

Query: 610  IAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            +AQHGKEPSVAIGLQACQI WD+ +HFYEAG PWWR
Sbjct: 442  MAQHGKEPSVAIGLQACQISWDDDEHFYEAGLPWWR 477


>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis vinifera]
            gi|302144082|emb|CBI23187.3| unnamed protein product
            [Vitis vinifera]
          Length = 472

 Score =  642 bits (1655), Expect = 0.0
 Identities = 299/396 (75%), Positives = 343/396 (86%)
 Frame = -3

Query: 1693 GYPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALV 1514
            GYP+Y RLLPCPSQNGPPRVEHLVV EGG VL+Y+ K LDLPPL+VADLIHFGAVY ALV
Sbjct: 76   GYPEYHRLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALDLPPLFVADLIHFGAVYYALV 135

Query: 1513 CPKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRV 1334
            CP+PPP+ATPEQV+ ++EVTAPSVLRKR SIKGKT+REAQ+TFRIT  +EFVE GTYLRV
Sbjct: 136  CPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKTFRITDVNEFVEAGTYLRV 195

Query: 1333 HVHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKA 1154
            HVHPKRFPRCYEIDW+SRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATF +R LGL  
Sbjct: 196  HVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTT 255

Query: 1153 PLLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRP 974
            PL TTHQIDNCTEGCVVLAR+KEYCS FHGKIRE            AP+PIG++THYMRP
Sbjct: 256  PLRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYRALAAAPMPIGIVTHYMRP 315

Query: 973  INMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINL 794
            +N+APRLIS+DF+ GW+LCQLEVL+CK+VPWP+ L++++Y  ED GWP ++ A++CKINL
Sbjct: 316  VNIAPRLISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKYCIEDRGWPLKNSAFKCKINL 375

Query: 793  LTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEE 614
            LTGRTHQIRAQLAA GAPIVGDSMYMPAAIA++ +PG+NPF K  K+    ++    V E
Sbjct: 376  LTGRTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNPFGKYKKKYTTENDRETAVAE 435

Query: 613  WIAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWW 506
            WIAQHGKEP VAIGLQACQI WD+G+HFY+AG PWW
Sbjct: 436  WIAQHGKEPGVAIGLQACQISWDDGEHFYKAGSPWW 471


>ref|XP_002304926.2| pseudouridine synthase family protein [Populus trichocarpa]
            gi|550340110|gb|EEE85437.2| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 470

 Score =  641 bits (1654), Expect = 0.0
 Identities = 294/397 (74%), Positives = 338/397 (85%)
 Frame = -3

Query: 1693 GYPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALV 1514
            GYP+Y RLLPCPS N PPR+EHLVV E GPVL+Y+CK LDLPPL+VADLIHFGAV+ ALV
Sbjct: 70   GYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYICKALDLPPLFVADLIHFGAVHYALV 129

Query: 1513 CPKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRV 1334
            CP+PP TATPEQ++ +EEVTAPSVL+KR SIKGKTVREAQ+TFRITH D+F+E G YLRV
Sbjct: 130  CPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREAQKTFRITHVDQFLEAGMYLRV 189

Query: 1333 HVHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKA 1154
            HVHPKRFPRCY+IDW+SRII VTES+VVLDKPAGTSVGGTTDNIEESCATF +R LGL A
Sbjct: 190  HVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCATFATRALGLTA 249

Query: 1153 PLLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRP 974
            PL TTHQIDNCTEGCVVLAR++E CS FHGKIRE            +PVPIGV+ HYMRP
Sbjct: 250  PLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYIALAASPVPIGVVNHYMRP 309

Query: 973  INMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINL 794
            INMAPRL+S++F+ GWHLCQLEV++CK+VPWP  +M+++Y  +DCGWP +D AYECKINL
Sbjct: 310  INMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDAVMEEKYCVQDCGWPSKDHAYECKINL 369

Query: 793  LTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEE 614
            LTGRTHQIRAQLAA GAP+VGDSMYMPAA+A+MV+PG NPF K  KQ  +  + A  VEE
Sbjct: 370  LTGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCNPFGKYKKQYTSEDDKAIAVEE 429

Query: 613  WIAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            W+  HGKEP+VAIGLQACQI WD+G H Y AG PWWR
Sbjct: 430  WVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWR 466


>ref|XP_004293270.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Fragaria
            vesca subsp. vesca]
          Length = 477

 Score =  639 bits (1649), Expect = e-180
 Identities = 297/397 (74%), Positives = 340/397 (85%)
 Frame = -3

Query: 1693 GYPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALV 1514
            GYP Y RLLPCPSQNGPPRVEHLVV EGGPVLEY+CK LDLP  +VADLIHFGAVY ALV
Sbjct: 80   GYP-YTRLLPCPSQNGPPRVEHLVVSEGGPVLEYICKKLDLPAQFVADLIHFGAVYYALV 138

Query: 1513 CPKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRV 1334
            CPKPPPTATPEQ++ Y+EVTAPSVL+KR SIKGKTVREAQ+TFRITH D++VE GTYLRV
Sbjct: 139  CPKPPPTATPEQMRVYKEVTAPSVLKKRDSIKGKTVREAQKTFRITHADQYVEDGTYLRV 198

Query: 1333 HVHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKA 1154
            HVHPKRFPRCY+IDW+SR+IAVTE +VVLDKPAGT+VGGTTDNIEESCATFTSR LGL  
Sbjct: 199  HVHPKRFPRCYDIDWKSRVIAVTEDFVVLDKPAGTTVGGTTDNIEESCATFTSRALGLST 258

Query: 1153 PLLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRP 974
            PL+TTHQIDNCTEGCVVLAR+K+YCS FHGKIRE            APVP+G ITHYMRP
Sbjct: 259  PLMTTHQIDNCTEGCVVLARTKDYCSVFHGKIREKKVKKLYLALAAAPVPLGTITHYMRP 318

Query: 973  INMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINL 794
            IN+APRLIS+D ++ W LCQLEV++CKKVPWP+ +++++Y  EDCGWP +D+AYECKINL
Sbjct: 319  INVAPRLISEDSIERWSLCQLEVMECKKVPWPSSVIEEEYGVEDCGWPSKDYAYECKINL 378

Query: 793  LTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEE 614
            LTG+THQIRAQLAA G P+VGDSMYMPAAIA+M NP +NPF K  K  A  ++    V E
Sbjct: 379  LTGKTHQIRAQLAACGTPLVGDSMYMPAAIAEMENPELNPFGKHKKHYAGENDEEIAVTE 438

Query: 613  WIAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            W+A+HGKEP VAIGLQACQI WD+G+H +EA  PWWR
Sbjct: 439  WMARHGKEPIVAIGLQACQISWDDGEHSFEARAPWWR 475


>ref|XP_003547248.2| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Glycine max]
          Length = 478

 Score =  638 bits (1646), Expect = e-180
 Identities = 295/396 (74%), Positives = 330/396 (83%)
 Frame = -3

Query: 1690 YPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALVC 1511
            + KY RLLPCPS   PPR+EHLVV EGGPVLE++CK LDLPPLYV+DLI FGAVY ALVC
Sbjct: 82   FRKYDRLLPCPSHKTPPRIEHLVVSEGGPVLEHICKALDLPPLYVSDLIQFGAVYYALVC 141

Query: 1510 PKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRVH 1331
            P+PPP AT EQ++ ++EVT PSVLRKR SIKGKTVREAQ+TFR+TH D+FVEPGTYLRVH
Sbjct: 142  PQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEPGTYLRVH 201

Query: 1330 VHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKAP 1151
            VHPKR PRCYEIDWRSRII V ESYVVLDKPAGTSVGGTTDNIEESCATF +R LG+  P
Sbjct: 202  VHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGMTTP 261

Query: 1150 LLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRPI 971
            L+TTHQIDNCTEGCVVLAR+KEYCS FHGKIRE             P+P G+ITHYMRPI
Sbjct: 262  LMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYLALAAFPLPTGIITHYMRPI 321

Query: 970  NMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINLL 791
            +MAPRLIS+DF+ GWHLCQLEVL+C+KVPWP   +Q +Y  EDCGWP QD+AYECKINLL
Sbjct: 322  DMAPRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCIEDCGWPSQDYAYECKINLL 381

Query: 790  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEEW 611
            TG+THQIRAQ AA  AP++GDSMYMPAAIA M NPG+NPF K  K  ++ SE    V  W
Sbjct: 382  TGKTHQIRAQFAAYKAPLIGDSMYMPAAIANMSNPGLNPFGKYKKDFSSESEKETAVVNW 441

Query: 610  IAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            IAQHGKEPSVAIGLQACQI WD+ +HFYEA  PWWR
Sbjct: 442  IAQHGKEPSVAIGLQACQISWDDDEHFYEASSPWWR 477


>gb|ESW19737.1| hypothetical protein PHAVU_006G151200g [Phaseolus vulgaris]
          Length = 478

 Score =  638 bits (1645), Expect = e-180
 Identities = 296/395 (74%), Positives = 331/395 (83%)
 Frame = -3

Query: 1687 PKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALVCP 1508
            PKY RLLPCP    PPRVEHLVV EGGPVLE++CK L+LPPLYV DLI FGAVY ALVCP
Sbjct: 83   PKYDRLLPCPLHKTPPRVEHLVVSEGGPVLEHICKALELPPLYVTDLIQFGAVYYALVCP 142

Query: 1507 KPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRVHV 1328
            +PPP+AT EQ++ ++EVT PSVLR+R SIKGKTVREAQ+TFR+TH D+FVEPGTYLRVHV
Sbjct: 143  QPPPSATEEQIRVFKEVTEPSVLRQRASIKGKTVREAQKTFRVTHADQFVEPGTYLRVHV 202

Query: 1327 HPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKAPL 1148
            HPKRFPRCYEIDWRSRII+V ESYVVLDKPAGTSVGGTTDNIEESCATF +R LGL APL
Sbjct: 203  HPKRFPRCYEIDWRSRIISVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTAPL 262

Query: 1147 LTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRPIN 968
            +TTHQIDNCTEGCVVLAR+KEYCS FHGKIRE            +P+P G+ITHYMRPIN
Sbjct: 263  MTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALASSPLPTGIITHYMRPIN 322

Query: 967  MAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINLLT 788
            MAPRLIS+DF+ GW +CQLE+ +C+KVPWPT  +Q +Y  EDCGWP QDFAYECKINLLT
Sbjct: 323  MAPRLISEDFIKGWLMCQLEIQECRKVPWPTPSIQDKYCVEDCGWPYQDFAYECKINLLT 382

Query: 787  GRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEEWI 608
            GRTHQIRAQ AA  AP+VGDSMYMPAAI  M NPG+NPF K  +  ++ SE    V  WI
Sbjct: 383  GRTHQIRAQFAACRAPLVGDSMYMPAAIGDMSNPGLNPFGKYKRDFSSESEKETAVVNWI 442

Query: 607  AQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            AQHGKEP VAIGLQACQI WD+ DHFYE+G PWWR
Sbjct: 443  AQHGKEPGVAIGLQACQISWDDDDHFYESGSPWWR 477


>ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542360|gb|EEF43902.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 476

 Score =  638 bits (1645), Expect = e-180
 Identities = 292/397 (73%), Positives = 337/397 (84%)
 Frame = -3

Query: 1693 GYPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALV 1514
            G   Y RLLPCPS N PPR+EHLVV E GPVL+Y+CK LDLPPL+VADLI FGAV+ ALV
Sbjct: 76   GNSDYDRLLPCPSYNRPPRIEHLVVLEEGPVLDYICKALDLPPLFVADLIDFGAVHYALV 135

Query: 1513 CPKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRV 1334
            CP+PP TATPEQ++ +E+ TAPSVL+KR+SIKGKTVREAQ+TFRITH D+++E GTYLRV
Sbjct: 136  CPRPPTTATPEQIRLFEKFTAPSVLKKRSSIKGKTVREAQKTFRITHVDQYLEAGTYLRV 195

Query: 1333 HVHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKA 1154
            HVHPKRFPRCY+IDW+SRIIAVT+ YVVLDKPAGTSVGGT DNIEESCATF +R LGL  
Sbjct: 196  HVHPKRFPRCYDIDWKSRIIAVTDCYVVLDKPAGTSVGGTADNIEESCATFATRALGLTT 255

Query: 1153 PLLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRP 974
            PL TTHQIDNCTEGCVVLARSKEYCS FHGKIRE            +PVP+GVI +YMRP
Sbjct: 256  PLKTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAASPVPVGVIKNYMRP 315

Query: 973  INMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINL 794
            +N+APRL+S++FV+GWHLCQLEVL+C+KVPWP   ++++Y  EDCGWP +DFAYECKINL
Sbjct: 316  VNIAPRLLSEEFVNGWHLCQLEVLECRKVPWPDAAIEEKYSVEDCGWPSKDFAYECKINL 375

Query: 793  LTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEE 614
            LTGRTHQIRAQLAASGAP+VGDSMYMPAA+A+M NPG+NPF K  KQ  N S+ +  V E
Sbjct: 376  LTGRTHQIRAQLAASGAPLVGDSMYMPAAVAEMANPGLNPFGKHRKQYTNESDESMAVAE 435

Query: 613  WIAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            W+AQHGKEP VAIGLQAC+I WD G H Y+AG PWWR
Sbjct: 436  WVAQHGKEPKVAIGLQACEISWDEGKHIYKAGSPWWR 472


>ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citrus clementina]
            gi|557551677|gb|ESR62306.1| hypothetical protein
            CICLE_v10015055mg [Citrus clementina]
          Length = 487

 Score =  635 bits (1637), Expect = e-179
 Identities = 297/397 (74%), Positives = 337/397 (84%)
 Frame = -3

Query: 1693 GYPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALV 1514
            GYP+Y RLLPCPSQN PPRVEHLVV EGGPVLEY+C+ L+LPPL+VADLIHFGAVY ALV
Sbjct: 82   GYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALV 141

Query: 1513 CPKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRV 1334
            CPKPP TATPEQ++ ++EVT PSVL KR+SIKGKTVREAQ+TFRITH D+ VE GTYLRV
Sbjct: 142  CPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRV 201

Query: 1333 HVHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKA 1154
            HVHPKRFPRCY+IDW+SRIIAVTES+VVLDKPAGTSVGGTTDNIEESCATF SR LGL  
Sbjct: 202  HVHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTT 261

Query: 1153 PLLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRP 974
            PL TTHQIDNCTEGCVVLAR++EYCS FH KIRE            AP+P+G++THYMRP
Sbjct: 262  PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRP 321

Query: 973  INMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINL 794
            IN+APRLIS+DF+ GW+LCQLEV++CKKVPWP   + K Y  EDCGWP +D+AYECKI L
Sbjct: 322  INIAPRLISEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL 381

Query: 793  LTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEE 614
            LTGRTHQ+RAQLAA GAPIVGDSMYMPAAIAQ+ +PG+NPF K  K+ A+  +    V E
Sbjct: 382  LTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIE 441

Query: 613  WIAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            WI+QHGKEPSVAIGLQAC I WD+G+  YEA  PWWR
Sbjct: 442  WISQHGKEPSVAIGLQACHISWDDGECCYEARSPWWR 478


>ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Citrus sinensis] gi|568827302|ref|XP_006468003.1|
            PREDICTED: RNA pseudouridine synthase 6,
            chloroplastic-like isoform X2 [Citrus sinensis]
          Length = 487

 Score =  631 bits (1628), Expect = e-178
 Identities = 295/397 (74%), Positives = 335/397 (84%)
 Frame = -3

Query: 1693 GYPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALV 1514
            GYP+Y RLLPCPSQN PPRVEHLVV EGGPVLEY+C+ L+LPPL+VADLIHFGAVY ALV
Sbjct: 82   GYPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALV 141

Query: 1513 CPKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRV 1334
            CPKPP TATPEQ++ ++EVT PSVL KR+SIKGKTVREAQ+TFRITH D+ VE GTYLRV
Sbjct: 142  CPKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRV 201

Query: 1333 HVHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKA 1154
            HVHPKRFPRCY+IDW SRIIAVTES+VVLDKPAGTSVGGTTDNIEESCATF SR LGL  
Sbjct: 202  HVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTT 261

Query: 1153 PLLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRP 974
            PL TTHQIDNCTEGCVVLAR++EYCS FH KIRE            AP+P+G++THYMRP
Sbjct: 262  PLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRP 321

Query: 973  INMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINL 794
            IN+APRL+S+DF+ GW+LCQLEV++CKKVPWP   + K Y  EDCGWP +D+AYECKI L
Sbjct: 322  INIAPRLVSEDFITGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKL 381

Query: 793  LTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEE 614
            LTGRTHQ+RAQLAA GAPIVGDSMYMPAAIAQ+ +PG+NPF K  K+ A+  +    V E
Sbjct: 382  LTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIE 441

Query: 613  WIAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            WI+QHG EPSVAIGLQAC I WD+G+  YEA  PWWR
Sbjct: 442  WISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWR 478


>ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542359|gb|EEF43901.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 395

 Score =  621 bits (1602), Expect = e-175
 Identities = 284/393 (72%), Positives = 331/393 (84%)
 Frame = -3

Query: 1681 YGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALVCPKP 1502
            Y RLLPCPSQN PPRVEHLVV E GPVL+Y+CK LDLPPL+VADLIHFGAV+ ALVCP+P
Sbjct: 3    YDRLLPCPSQNRPPRVEHLVVLEEGPVLDYICKALDLPPLFVADLIHFGAVHYALVCPQP 62

Query: 1501 PPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRVHVHP 1322
            PPTATPEQ++ +EE TAPSVL+KR SIKGKTVREAQ+TFR++   +F+E GTYLRV+VHP
Sbjct: 63   PPTATPEQIRLFEEFTAPSVLKKRASIKGKTVREAQKTFRVSSVHQFLEVGTYLRVYVHP 122

Query: 1321 KRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKAPLLT 1142
            +RFPRCYEIDW+SRIIAVTESYVVLDKPAGTSVGGTT+NIEE+CATF +R LGL  PL T
Sbjct: 123  RRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTNNIEETCATFATRALGLTIPLKT 182

Query: 1141 THQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRPINMA 962
            THQIDNCTEGCVVLAR+ EYC  FHGKIRE             PVP+GVITHYMRP N+ 
Sbjct: 183  THQIDNCTEGCVVLARTNEYCPVFHGKIRENKVKKLYLALAACPVPVGVITHYMRPGNIP 242

Query: 961  PRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINLLTGR 782
            PRL+S++F++GW+LCQLEVL+C+KVPWP  + +++Y  EDCGWP +DFAYECKINLLTGR
Sbjct: 243  PRLVSEEFIEGWYLCQLEVLECRKVPWPDTVTEEKYSVEDCGWPSKDFAYECKINLLTGR 302

Query: 781  THQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEEWIAQ 602
            THQIRAQLAA GAP+VGDSMYMPAAIA+M NPGVNPF K  KQ    ++ +  V EW+ +
Sbjct: 303  THQIRAQLAACGAPLVGDSMYMPAAIAEMANPGVNPFGKHKKQYTGENDESMGVAEWVER 362

Query: 601  HGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            HGKEPS+AIGLQAC+I W +  H Y+AG PWWR
Sbjct: 363  HGKEPSIAIGLQACEISWGDSKHIYKAGPPWWR 395


>ref|XP_004486127.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 6,
            chloroplastic-like [Cicer arietinum]
          Length = 467

 Score =  619 bits (1597), Expect = e-174
 Identities = 289/408 (70%), Positives = 328/408 (80%), Gaps = 12/408 (2%)
 Frame = -3

Query: 1690 YPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALVC 1511
            YPKY RLLPCP+   PPR+EH+VV EGGPVLEY+CK LDLPPL+VADLI FGAVY ALVC
Sbjct: 59   YPKYNRLLPCPTHKIPPRIEHIVVSEGGPVLEYICKALDLPPLFVADLIKFGAVYFALVC 118

Query: 1510 PKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRVH 1331
            PKPPPTAT E+++ +++ T P VLRKR SIKGKT+REAQ+TF +T  D+FVEPGTYLRVH
Sbjct: 119  PKPPPTATAEEIRVFKKATEPLVLRKRASIKGKTIREAQKTFLVTDVDQFVEPGTYLRVH 178

Query: 1330 VHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKAP 1151
            VHPKRFPRCYEIDWRSRIIAV ESYV+LDKPAGTSVGGTT N EESCA F +R L L  P
Sbjct: 179  VHPKRFPRCYEIDWRSRIIAVEESYVILDKPAGTSVGGTTGNTEESCANFATRALELTTP 238

Query: 1150 LLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRPI 971
            L+TTHQIDNCTEGCVVLAR+KEYCS FHGKIRE            +P+P G+I HYMRPI
Sbjct: 239  LMTTHQIDNCTEGCVVLARNKEYCSVFHGKIREKKVKKIYLALAASPLPTGIIKHYMRPI 298

Query: 970  NMAPRLISQD------------FVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPP 827
            NMAPRLIS+             F  GWH+CQLEVL+C K+PWPT ++Q++Y  EDCGWP 
Sbjct: 299  NMAPRLISEGXTTQIGMHSKDYFNKGWHICQLEVLECIKIPWPTTVVQEKYCVEDCGWPS 358

Query: 826  QDFAYECKINLLTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNA 647
            QD+AYECKINLLTGRTHQIRAQ AA  AP++GDSMYMPAAIA+M+NPG+NPF K  K   
Sbjct: 359  QDYAYECKINLLTGRTHQIRAQFAACKAPLIGDSMYMPAAIAEMMNPGLNPFGKYKKDFT 418

Query: 646  NGSEMAQKVEEWIAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            + SE    V  WIAQHGKEPSVAIGLQACQI WD+G+H YEAG PWWR
Sbjct: 419  SESEKETAVINWIAQHGKEPSVAIGLQACQISWDDGEHIYEAGSPWWR 466


>ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 6,
            chloroplastic-like [Cucumis sativus]
          Length = 475

 Score =  605 bits (1561), Expect = e-170
 Identities = 282/397 (71%), Positives = 326/397 (82%)
 Frame = -3

Query: 1693 GYPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALV 1514
            GYP+Y RLLPCPS + PPRVEH+VV E GPV+EY+CK+L+LPPLYVADLIHFGAVY ALV
Sbjct: 75   GYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVYYALV 134

Query: 1513 CPKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRV 1334
            CP+PP TATPEQ++ ++  T PS L+ R SIKGKTVREAQ+TFRITH DEFVE GTYLRV
Sbjct: 135  CPQPPKTATPEQIRLFKNXTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGTYLRV 194

Query: 1333 HVHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKA 1154
            HVHPKRFPRCYEIDW+SRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATF +R LGL +
Sbjct: 195  HVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTS 254

Query: 1153 PLLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRP 974
            PL TTHQIDNCTEGCV+ AR+KEYCS FHGKIRE            APVP+G+ITHYMRP
Sbjct: 255  PLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPVPMGIITHYMRP 314

Query: 973  INMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINL 794
            IN+APRL+S+D +DGW +CQLEVL+C++V WP    + +Y  EDCGWP +  AYEC+INL
Sbjct: 315  INIAPRLVSKDCIDGWIICQLEVLECREVSWPDADTEAKYRVEDCGWPSKKKAYECRINL 374

Query: 793  LTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEE 614
            LTGRTHQIRAQLA  GAP+VGDSMYMPA +A+M +PG+NPF K  K+  N  +    V E
Sbjct: 375  LTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCKKEYTNEEDKETSVAE 434

Query: 613  WIAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            W A HGKEP+VAIGLQA +I WD+ +H Y AG PWWR
Sbjct: 435  WSALHGKEPAVAIGLQAYEISWDSREHIYNAGTPWWR 471


>ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
            sativus]
          Length = 475

 Score =  605 bits (1561), Expect = e-170
 Identities = 282/397 (71%), Positives = 328/397 (82%)
 Frame = -3

Query: 1693 GYPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALV 1514
            GYP+Y RLLPCPS + PPRVEH+VV E GPV+EY+CK+L+LPPLYVADLIHFGAVY ALV
Sbjct: 75   GYPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVYYALV 134

Query: 1513 CPKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRV 1334
            CP+PP TATPEQ++ +++ T PS L+ R SIKGKTVREAQ+TFRITH DEFVE GTYLRV
Sbjct: 135  CPQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGTYLRV 194

Query: 1333 HVHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKA 1154
            HVHPKRFPRCYEIDW+SRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATF +R LGL +
Sbjct: 195  HVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTS 254

Query: 1153 PLLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRP 974
            PL TTHQIDNCTEGCV+ AR+KEYCS FHGKIRE            APVP+G+ITHYMRP
Sbjct: 255  PLWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPVPMGIITHYMRP 314

Query: 973  INMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINL 794
            IN+APRL+S+D +DGW +CQLEVL+C++V WP   ++ +Y  EDCGWP +  AYEC+INL
Sbjct: 315  INIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRVEDCGWPSKKKAYECRINL 374

Query: 793  LTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEE 614
            LTGRTHQIRAQLA  GAP+VGDSMYMPA +A+M +PG+NPF K  K+  N  +    V E
Sbjct: 375  LTGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCKKEYTNEEDKETAVAE 434

Query: 613  WIAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            W A HGKEP+VAIGLQA +I WD+ +H Y AG PWWR
Sbjct: 435  WSALHGKEPAVAIGLQAYEISWDSREHSYNAGTPWWR 471


>ref|XP_006858058.1| hypothetical protein AMTR_s00062p00043970 [Amborella trichopoda]
            gi|548862161|gb|ERN19525.1| hypothetical protein
            AMTR_s00062p00043970 [Amborella trichopoda]
          Length = 477

 Score =  602 bits (1553), Expect = e-169
 Identities = 279/396 (70%), Positives = 323/396 (81%)
 Frame = -3

Query: 1690 YPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALVC 1511
            YP Y  LLPCPS+NGPPR+EHL+V EGGPVL+Y+CK LDLP L+VADLIHFGAVY ALV 
Sbjct: 80   YPGYTSLLPCPSKNGPPRIEHLIVSEGGPVLDYICKALDLPTLFVADLIHFGAVYYALVS 139

Query: 1510 PKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRVH 1331
            P+PPP+ATPEQVK ++E TA SVLRKR S+KGKTVREAQ+TFRITH +EFVE GTYLRV+
Sbjct: 140  PEPPPSATPEQVKLFKEATARSVLRKRASLKGKTVREAQKTFRITHANEFVEEGTYLRVY 199

Query: 1330 VHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKAP 1151
            VHPKRFPRCYEIDWRSR+IA TESYVVLDKPA T+VGGT  NIEE CATF SR LGL  P
Sbjct: 200  VHPKRFPRCYEIDWRSRVIAETESYVVLDKPAATTVGGTPCNIEECCATFVSRALGLDFP 259

Query: 1150 LLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRPI 971
            L TTHQIDNCTEGCVV +++KE+CS FHGKIRE            APVP+GVI+HYMRP+
Sbjct: 260  LRTTHQIDNCTEGCVVFSKTKEFCSIFHGKIREKQVKKLYLALATAPVPVGVISHYMRPV 319

Query: 970  NMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKINLL 791
            N APR+IS+D + GWHLCQLEVL+CK+VPWP   ++ Q   EDCGWP +DFAYECKINLL
Sbjct: 320  NRAPRIISKDHIGGWHLCQLEVLECKEVPWPRAAVEAQNGVEDCGWPSKDFAYECKINLL 379

Query: 790  TGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNANGSEMAQKVEEW 611
            TGRTHQIRAQLAA GAPIVGD+MY+PA+I ++  P +NPF + + ++       + VEEW
Sbjct: 380  TGRTHQIRAQLAACGAPIVGDTMYLPASIKEIAFPNINPFCEANSESMCDESKGEAVEEW 439

Query: 610  IAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWWR 503
            IAQHGKEP+ AIGLQAC+I WD G  FY A  PWWR
Sbjct: 440  IAQHGKEPNAAIGLQACEISWDGGACFYTARAPWWR 475


>ref|XP_006284907.1| hypothetical protein CARUB_v10006203mg [Capsella rubella]
            gi|482553612|gb|EOA17805.1| hypothetical protein
            CARUB_v10006203mg [Capsella rubella]
          Length = 479

 Score =  596 bits (1536), Expect = e-167
 Identities = 281/403 (69%), Positives = 328/403 (81%), Gaps = 6/403 (1%)
 Frame = -3

Query: 1693 GYPKYGRLLPCPSQNGPPRVEHLVVKEGGP-VLEYVCKTLDLPPLYVADLIHFGAVYCAL 1517
            GYP+Y RL+PCP+ N PPR+EH+VV E    V E++ + LDLPPLYVADLI FGAV+ AL
Sbjct: 79   GYPEYNRLMPCPAYNNPPRIEHMVVLEDDVLVAEFISRQLDLPPLYVADLIRFGAVHYAL 138

Query: 1516 VCPKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLR 1337
            VCPKPPPTATPE++K +EEVT+PSVL+KR+SIKGKTVREAQ+TFR+TH D++ E GTYLR
Sbjct: 139  VCPKPPPTATPEEIKLFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTHTDQYAEAGTYLR 198

Query: 1336 VHVHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLK 1157
            VHVHPKR PRCYEIDW+SRIIAVT+SYV+LDKPAGT+VGGTTDNIEESCATF SR L L 
Sbjct: 199  VHVHPKRSPRCYEIDWKSRIIAVTDSYVILDKPAGTTVGGTTDNIEESCATFASRALDLP 258

Query: 1156 APLLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMR 977
             PL TTHQIDNCTEGCVV AR+KEYCS FH KIR+            AP+P G+I+HYMR
Sbjct: 259  EPLKTTHQIDNCTEGCVVFARTKEYCSVFHMKIRDKEVKKLYRALAAAPLPTGIISHYMR 318

Query: 976  PINMAPRLISQDFVDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPPQDFAYECKIN 797
            P NMAPRL+S+D + GWHLCQLEVL+CKK+PWP    +K++D EDCGW  ++FAYEC IN
Sbjct: 319  PKNMAPRLVSEDSIKGWHLCQLEVLECKKIPWPNAGTEKKHDIEDCGWTSKEFAYECTIN 378

Query: 796  LLTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSK---QNANGSEMAQ 626
            LLTG+THQIRAQLAA GAP+VGDSMYMPAAIA+M+NP +NP+ K  K      N  E A 
Sbjct: 379  LLTGKTHQIRAQLAAYGAPLVGDSMYMPAAIAEMMNPEINPYGKAKKHYTMEENDKETA- 437

Query: 625  KVEEWIAQHGKEPSVAIGLQACQIFW--DNGDHFYEAGKPWWR 503
             V EWI +HGKEP V IGLQACQI W  D+G+HFYEAG PWWR
Sbjct: 438  -VAEWIDRHGKEPRVGIGLQACQISWDDDDGEHFYEAGTPWWR 479


>ref|XP_003626283.1| RNA pseudourine synthase [Medicago truncatula]
            gi|355501298|gb|AES82501.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 462

 Score =  591 bits (1524), Expect = e-166
 Identities = 279/407 (68%), Positives = 326/407 (80%), Gaps = 12/407 (2%)
 Frame = -3

Query: 1690 YPKYGRLLPCPSQNGPPRVEHLVVKEGGPVLEYVCKTLDLPPLYVADLIHFGAVYCALVC 1511
            YPKY RLLPCPS   PPR+EHLVV + GPVL+Y+CK LDLP L+VADLI FGAVY ALV 
Sbjct: 57   YPKYDRLLPCPSHKIPPRIEHLVVSQEGPVLQYICKALDLPHLFVADLIQFGAVYFALVS 116

Query: 1510 PKPPPTATPEQVKTYEEVTAPSVLRKRTSIKGKTVREAQRTFRITHPDEFVEPGTYLRVH 1331
            P+PPPTAT EQ++ +E+VT P VL+KR+S+KGKT+REAQ+TFR+T  ++FVEPGTYLRVH
Sbjct: 117  PEPPPTATAEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRVTDANQFVEPGTYLRVH 176

Query: 1330 VHPKRFPRCYEIDWRSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFTSRDLGLKAP 1151
            VHPKRFPRCYEIDWRSRIIAV ESYVVLDKPAGTSVG TT NIEESC TF +R LGL  P
Sbjct: 177  VHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIEESCVTFATRALGLTTP 236

Query: 1150 LLTTHQIDNCTEGCVVLARSKEYCSEFHGKIREXXXXXXXXXXXXAPVPIGVITHYMRPI 971
            L+TTHQIDNCTEGCVVLAR+KEYCS FH KIRE            +P+PIG+I HYMRP 
Sbjct: 237  LITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLALAASPLPIGIIKHYMRPT 296

Query: 970  NMAPRLISQ-----------DF-VDGWHLCQLEVLDCKKVPWPTVLMQKQYDTEDCGWPP 827
            N APRLIS+           D+ + GWH+CQLEV+DC+K+PWP +++Q +Y    CGWP 
Sbjct: 297  NTAPRLISEGNSTQIGMLCKDYCIKGWHICQLEVMDCRKIPWPAIVVQDEY----CGWPS 352

Query: 826  QDFAYECKINLLTGRTHQIRAQLAASGAPIVGDSMYMPAAIAQMVNPGVNPFTKKSKQNA 647
            QD+AYECKINLLTGRTHQIRAQ AA  API+GD+MYMPAAIA+M+NPG+NPF K +K  +
Sbjct: 353  QDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPAAIAEMINPGLNPFGKYNKDFS 412

Query: 646  NGSEMAQKVEEWIAQHGKEPSVAIGLQACQIFWDNGDHFYEAGKPWW 506
            + SE    V  WIAQHGKEPSVAIGLQACQI WD+ ++ Y AG PWW
Sbjct: 413  SESEKKTAVINWIAQHGKEPSVAIGLQACQISWDDDEYIYRAGLPWW 459