BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00015228
         (1112 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        374   e-101
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     374   e-101
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   367   4e-99
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                366   1e-98
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   360   7e-97
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   360   7e-97
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     358   2e-96
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   358   2e-96
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   354   4e-95
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   354   4e-95
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...   351   3e-94
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   351   3e-94
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   350   8e-94
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   344   3e-92
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               344   3e-92
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           342   1e-91
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   341   3e-91
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   341   3e-91
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   341   4e-91
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   332   1e-88

>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  374 bits (961), Expect = e-101
 Identities = 190/381 (49%), Positives = 246/381 (64%), Gaps = 11/381 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARG-----RSFXXXXXXXX 165
            T+LY RDT+ L++V +AL +KE     +    S +Q +GL+ RG      +         
Sbjct: 161  TILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSS 220

Query: 166  XIQRSRSKSRYKDLICNYCKKKGHIKKQCYKLK---RRNQSQEPAQRKKEGIAEADIAQE 336
               R RSKSR +   C YCK+ GH   +C+KL+   +R     P  +K+E    A +  E
Sbjct: 221  SSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDE 280

Query: 337  ESDGSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNGVVLMGNNASCKVAG 516
            +SD  +L   +    +SD+WILD+ C++HMCPNRDWF++YE V  G VLMG++  C+VAG
Sbjct: 281  KSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAG 340

Query: 517  IGTIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMK 696
            IGT+++KM DG IRTL+DVRH+P+LK++LIS+  LD KGY+YSG DG+LKV+KG+LVVMK
Sbjct: 341  IGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 400

Query: 697  GRKIGGNLYVLE---XXXXXXXXXXXXXXXXITKLWHMRLGHMSLKGLTLLSKRGLLCGQ 867
                  NLY L+                    T LWHMRLGHMS  GL  LSKRGLL GQ
Sbjct: 401  ASIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQ 460

Query: 868  TTSDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDD 1047
            + S L FCEHCIFGK  RV FN   H T+G LDY+HSDLWGP++  S GGARYM+T +DD
Sbjct: 461  SISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDD 520

Query: 1048 FSRKVWVFFLKHKDQVFNTFK 1110
            +SRKVW +FLKHK Q FN FK
Sbjct: 521  YSRKVWPYFLKHKYQAFNVFK 541


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  374 bits (960), Expect = e-101
 Identities = 190/381 (49%), Positives = 246/381 (64%), Gaps = 11/381 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARGR-----SFXXXXXXXX 165
            T+LY RDT+ L++V +AL +KE     +    S +Q +GL+ RGR     +         
Sbjct: 70   TILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTNNKSRDKSS 129

Query: 166  XIQRSRSKSRYKDLICNYCKKKGHIKKQCYKLK---RRNQSQEPAQRKKEGIAEADIAQE 336
             I R RSKSR +   C YCK+ GH   +C+KL+   +R +   P  +K+E    A +  E
Sbjct: 130  SIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDE 189

Query: 337  ESDGSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNGVVLMGNNASCKVAG 516
            +SD  +L   +    +SD+WILD+ C++HMCPNRDWF++YE V  G VLMG++  C+VAG
Sbjct: 190  KSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAG 249

Query: 517  IGTIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMK 696
            IGT+++KM DG IRTL DVRH+P+LK++LIS+  LD KGY+YSG DG+LKV+KG+LVVMK
Sbjct: 250  IGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 309

Query: 697  GRKIGGNLYVLE---XXXXXXXXXXXXXXXXITKLWHMRLGHMSLKGLTLLSKRGLLCGQ 867
                  NLY L                     T LWHMRLGHMS  GL  LSKRGLL GQ
Sbjct: 310  ADIKYANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQ 369

Query: 868  TTSDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDD 1047
            +   L FCEHCIFGK  RV FN   H T+G LDY+HSDLWGP++  S GGARYM+T +DD
Sbjct: 370  SIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDD 429

Query: 1048 FSRKVWVFFLKHKDQVFNTFK 1110
            +SRKVW +FLKHK Q F+ FK
Sbjct: 430  YSRKVWPYFLKHKYQAFDVFK 450


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  367 bits (943), Expect = 4e-99
 Identities = 185/378 (48%), Positives = 240/378 (63%), Gaps = 8/378 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARGRSFXXXXXXXXXIQ-- 174
            T+LY RDT+ L++V +AL +KE     +    S +Q + L+ RGR            +  
Sbjct: 103  TILYSRDTLTLQEVYDALHAKEKMKKMVPSEGSNSQPESLVVRGRQQEKNTDNKSRDKSS 162

Query: 175  ---RSRSKSRYKDLICNYCKKKGHIKKQCYKLKRRNQSQ---EPAQRKKEGIAEADIAQE 336
               R RSKSR +   C YCK+ GH    C+KL+ + + +   +P  +++E    A     
Sbjct: 163  SGYRGRSKSRGRYKSCKYCKRGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATDN 222

Query: 337  ESDGSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNGVVLMGNNASCKVAG 516
            + D  +L   +    +SDEW+LD+GC++HMCPNRDWF++YE V  G VLMG+N  CKVAG
Sbjct: 223  KPDAELLVAYAGCVQTSDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAG 282

Query: 517  IGTIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMK 696
            +GTI++KM DG IRTL+DVRH+P LK+NLIS+  LD KGYRYSG DG+LKV+KG+LVVMK
Sbjct: 283  VGTIQIKMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMK 342

Query: 697  GRKIGGNLYVLEXXXXXXXXXXXXXXXXITKLWHMRLGHMSLKGLTLLSKRGLLCGQTTS 876
                  +LY L+                 + LWHMRLGHMS  GL  LSKRGLL GQ   
Sbjct: 343  ADIKNADLYHLQGTTIVGNVAAVTDSLSNSDLWHMRLGHMSEIGLAELSKRGLLDGQNIG 402

Query: 877  DLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDDFSR 1056
             L FCEHCIFGK  RV F    H T+G LDY+HSDLWGP++  S GGARYM+T +DD+SR
Sbjct: 403  KLKFCEHCIFGKHKRVKFTTSTHTTEGILDYVHSDLWGPARKRSFGGARYMMTIVDDYSR 462

Query: 1057 KVWVFFLKHKDQVFNTFK 1110
            KVW +FLKHK + F  FK
Sbjct: 463  KVWPYFLKHKFEAFLVFK 480


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  366 bits (939), Expect = 1e-98
 Identities = 185/381 (48%), Positives = 244/381 (64%), Gaps = 11/381 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARG-----RSFXXXXXXXX 165
            T+LY RDT+ L++V +AL +KE     +    S +Q +GL+ +G      +         
Sbjct: 146  TILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVQGSQQEKNTNNKSRDKSS 205

Query: 166  XIQRSRSKSRYKDLICNYCKKKGHIKKQCYKLK---RRNQSQEPAQRKKEGIAEADIAQE 336
               R RSKSR +   C YCK+ GH   +C+KL+   +R     P  +K++    A +  E
Sbjct: 206  SSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDE 265

Query: 337  ESDGSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNGVVLMGNNASCKVAG 516
            +SD  +L   +    +SD+WILD+ C++HMCPNRDWF++YE V  G VLMG++  C+VAG
Sbjct: 266  KSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAG 325

Query: 517  IGTIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMK 696
            IGT+++KM DG IRTL+DVRH+P+LK++LIS+  LD KGY+YSG DG+LKV+KG+LVVMK
Sbjct: 326  IGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMK 385

Query: 697  GRKIGGNLYVLE---XXXXXXXXXXXXXXXXITKLWHMRLGHMSLKGLTLLSKRGLLCGQ 867
                  NLY L+                    T LWHMRLGHMS  GL  LS RGLL GQ
Sbjct: 386  ADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQ 445

Query: 868  TTSDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDD 1047
            +   L FCEHCIFGK  RV FN   H T+G LDY+HSDLWGP++  S GGARYM+T ++D
Sbjct: 446  SIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVND 505

Query: 1048 FSRKVWVFFLKHKDQVFNTFK 1110
            +SRKVW +FLKHK Q FN FK
Sbjct: 506  YSRKVWPYFLKHKYQAFNVFK 526


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  360 bits (923), Expect = 7e-97
 Identities = 185/381 (48%), Positives = 240/381 (62%), Gaps = 11/381 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARGRSFXXXXXXXXXIQ-- 174
            T+LY RDT+ L++V +AL  KE     +    S +Q +GL+  GR            +  
Sbjct: 368  TILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSS 427

Query: 175  ---RSRSKSRYKDLICNYCKKKGHIKKQCYKLK---RRNQSQEPAQRKKEGIAEADIAQE 336
               R RSKSR +   C YCK+ GH   +C+KL    +R     P  +K+E    A +  E
Sbjct: 428  SSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDE 487

Query: 337  ESDGSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNGVVLMGNNASCKVAG 516
            +SD  +L   +    +SD+WIL++ C +HMCPNRDWF++YE V  G VLMG++  C+VAG
Sbjct: 488  KSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAG 547

Query: 517  IGTIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMK 696
            IGT+++KM DG IRTL+DVRH+P+LK++LIS+  LD KGY+YSG DG+LKV+KG+LVVMK
Sbjct: 548  IGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 607

Query: 697  GRKIGGNLYVLE---XXXXXXXXXXXXXXXXITKLWHMRLGHMSLKGLTLLSKRGLLCGQ 867
                  NLY L                     T LWHMRLGHM+  GL  LSKRGLL GQ
Sbjct: 608  ADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQ 667

Query: 868  TTSDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDD 1047
            +   L FCEHCIFGK  RV FN   H T+G LDY+HSDLWGP++  S GG RYM+T +DD
Sbjct: 668  SIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDD 727

Query: 1048 FSRKVWVFFLKHKDQVFNTFK 1110
            +SRKVW +FLKHK Q F+ FK
Sbjct: 728  YSRKVWPYFLKHKYQAFDVFK 748


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  360 bits (923), Expect = 7e-97
 Identities = 185/381 (48%), Positives = 240/381 (62%), Gaps = 11/381 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARGRSFXXXXXXXXXIQ-- 174
            T+LY RDT+ L++V +AL  KE     +    S +Q +GL+  GR            +  
Sbjct: 161  TILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSS 220

Query: 175  ---RSRSKSRYKDLICNYCKKKGHIKKQCYKLK---RRNQSQEPAQRKKEGIAEADIAQE 336
               R RSKSR +   C YCK+ GH   +C+KL    +R     P  +K+E    A +  E
Sbjct: 221  SSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDE 280

Query: 337  ESDGSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNGVVLMGNNASCKVAG 516
            +SD  +L   +    +SD+WIL++ C +HMCPNRDWF++YE V  G VLMG++  C+VAG
Sbjct: 281  KSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAG 340

Query: 517  IGTIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMK 696
            IGT+++KM DG IRTL+DVRH+P+LK++LIS+  LD KGY+YSG DG+LKV+KG+LVVMK
Sbjct: 341  IGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 400

Query: 697  GRKIGGNLYVLE---XXXXXXXXXXXXXXXXITKLWHMRLGHMSLKGLTLLSKRGLLCGQ 867
                  NLY L                     T LWHMRLGHM+  GL  LSKRGLL GQ
Sbjct: 401  ADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQ 460

Query: 868  TTSDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDD 1047
            +   L FCEHCIFGK  RV FN   H T+G LDY+HSDLWGP++  S GG RYM+T +DD
Sbjct: 461  SIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDD 520

Query: 1048 FSRKVWVFFLKHKDQVFNTFK 1110
            +SRKVW +FLKHK Q F+ FK
Sbjct: 521  YSRKVWPYFLKHKYQAFDVFK 541


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  358 bits (920), Expect = 2e-96
 Identities = 185/381 (48%), Positives = 241/381 (63%), Gaps = 11/381 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARGRSFXXXXXXXXXIQ-- 174
            T+LY  DT+ L++V +AL +KE     +    S +Q +GL+ RGR            +  
Sbjct: 196  TILYSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSS 255

Query: 175  ---RSRSKSRYKDLICNYCKKKGHIKKQCYKLK---RRNQSQEPAQRKKEGIAEADIAQE 336
               R RSKSR +   C YCK+ GH   +C+KL+   +R     P  +K+E    A +  E
Sbjct: 256  SSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDE 315

Query: 337  ESDGSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNGVVLMGNNASCKVAG 516
            +SD  +L   +    +SD+WILD+  ++HMCPNRDWF++YE +  G VLMG++  C+VAG
Sbjct: 316  KSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAG 375

Query: 517  IGTIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMK 696
            IGT+++KM DG IRTL+DVRH+P+LK++LIS+  LD KGY+YSG DG+LKV+KG+LVVMK
Sbjct: 376  IGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 435

Query: 697  GRKIGGNLYVLE---XXXXXXXXXXXXXXXXITKLWHMRLGHMSLKGLTLLSKRGLLCGQ 867
                  NLY L                     T LWHMRLGHMS  GL  LSKR LL GQ
Sbjct: 436  ADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQ 495

Query: 868  TTSDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDD 1047
            +   L FCEHCIFGK  RV FN   H T+G LDY+HSDLWGP+   S GGARYM+T +DD
Sbjct: 496  SIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDD 555

Query: 1048 FSRKVWVFFLKHKDQVFNTFK 1110
            +SRKVW +FLKHK Q F+ FK
Sbjct: 556  YSRKVWPYFLKHKYQAFDVFK 576


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  358 bits (920), Expect = 2e-96
 Identities = 185/381 (48%), Positives = 241/381 (63%), Gaps = 11/381 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARGRSFXXXXXXXXXIQ-- 174
            T+LY  DT+ L++V +AL +KE     +    S +Q +GL+ RGR            +  
Sbjct: 196  TILYSHDTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSS 255

Query: 175  ---RSRSKSRYKDLICNYCKKKGHIKKQCYKLK---RRNQSQEPAQRKKEGIAEADIAQE 336
               R RSKSR +   C YCK+ GH   +C+KL+   +R     P  +K+E    A +  E
Sbjct: 256  SSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDE 315

Query: 337  ESDGSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNGVVLMGNNASCKVAG 516
            +SD  +L   +    +SD+WILD+  ++HMCPNRDWF++YE +  G VLMG++  C+VAG
Sbjct: 316  KSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAG 375

Query: 517  IGTIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMK 696
            IGT+++KM DG IRTL+DVRH+P+LK++LIS+  LD KGY+YSG DG+LKV+KG+LVVMK
Sbjct: 376  IGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 435

Query: 697  GRKIGGNLYVLE---XXXXXXXXXXXXXXXXITKLWHMRLGHMSLKGLTLLSKRGLLCGQ 867
                  NLY L                     T LWHMRLGHMS  GL  LSKR LL GQ
Sbjct: 436  ADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQ 495

Query: 868  TTSDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDD 1047
            +   L FCEHCIFGK  RV FN   H T+G LDY+HSDLWGP+   S GGARYM+T +DD
Sbjct: 496  SIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDD 555

Query: 1048 FSRKVWVFFLKHKDQVFNTFK 1110
            +SRKVW +FLKHK Q F+ FK
Sbjct: 556  YSRKVWPYFLKHKYQAFDVFK 576


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1175

 Score =  354 bits (908), Expect = 4e-95
 Identities = 187/379 (49%), Positives = 237/379 (62%), Gaps = 9/379 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARGRS----FXXXXXXXXX 168
            T+L  R  + L +V EAL ++E     +    S ++G+ L  RGRS    +         
Sbjct: 58   TILLSRSELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVRGRSEQRTYNDSNDRDKN 117

Query: 169  IQRSRSKSRYKDLICNYCKKKGHIKKQCYKLKRRNQSQEPAQRKKEGIAEADIAQEESD- 345
              R RSKSR K   C YCKKK H  ++C+KL+ + +      RK +G A    + + SD 
Sbjct: 118  QSRGRSKSRGKKF-CKYCKKKNHFIEECWKLQNKEK------RKSDGKASVVTSADNSDS 170

Query: 346  GSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNG-VVLMGNNASCKVAGIG 522
            G  L V     SS DEWILD+ CSFH+C NRDWFSSY+ V NG VV MG++   ++ GIG
Sbjct: 171  GDCLVVFVVCVSSHDEWILDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIG 230

Query: 523  TIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMKGR 702
            ++++K HDGM RTL DVRH+P + +NLIS+  LDA+GY+YSG+ GV+KVSKG+LV M G 
Sbjct: 231  SVQIKTHDGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGD 290

Query: 703  KIGGNLYVLEXXXXXXXXXXXXXXXXI---TKLWHMRLGHMSLKGLTLLSKRGLLCGQTT 873
                NLYVL                     T +WHMRLGHMS  G+  L KR LL G T 
Sbjct: 291  MNSANLYVLRGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQ 350

Query: 874  SDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDDFS 1053
             ++ FCEHC+FGK  RV FN  +HRTKG LDY+H+DLWGPS+ PSLGGARYMLT IDD+S
Sbjct: 351  GNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYS 410

Query: 1054 RKVWVFFLKHKDQVFNTFK 1110
            RKVW +FLKHKD  F  FK
Sbjct: 411  RKVWPYFLKHKDDTFAAFK 429


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  354 bits (908), Expect = 4e-95
 Identities = 187/379 (49%), Positives = 237/379 (62%), Gaps = 9/379 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARGRS----FXXXXXXXXX 168
            T+L  RD + L +V EAL ++E     +    S ++G+ L  RGRS    +         
Sbjct: 163  TILLSRDELTLAEVYEALQNREKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDHDKS 222

Query: 169  IQRSRSKSRYKDLICNYCKKKGHIKKQCYKLKRRNQSQEPAQRKKEGIAEADIAQEESD- 345
              R RSKSR K   C YCKKK H  ++C+KL+ + +      RK +G A    + E SD 
Sbjct: 223  QSRGRSKSRGKKF-CKYCKKKNHFIEECWKLQNKEK------RKSDGKASVVTSAENSDS 275

Query: 346  GSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDN-GVVLMGNNASCKVAGIG 522
            G  L V +   +S DEWILD+ CSFH+C NRDWFSSY+ V N  VV MG++   ++ GIG
Sbjct: 276  GDCLVVFAGYVASHDEWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIG 335

Query: 523  TIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMKGR 702
            ++++K HDGM RTL DVRH+P + +NLIS+  LDA+GY+YSG+ GV+KVSKG+LV M G 
Sbjct: 336  SVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGD 395

Query: 703  KIGGNLYVLEXXXXXXXXXXXXXXXXI---TKLWHMRLGHMSLKGLTLLSKRGLLCGQTT 873
                NLYVL                     T LWHMRLGHMS  G+  L KR LL G T 
Sbjct: 396  MNSANLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQ 455

Query: 874  SDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDDFS 1053
             ++ FCEHC+FGK  RV FN  +HRTKG LDY+H+DLWGPS+ PSLGGARYMLT IDD+S
Sbjct: 456  GNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYS 515

Query: 1054 RKVWVFFLKHKDQVFNTFK 1110
            RK W +FLKHKD  F  FK
Sbjct: 516  RKEWPYFLKHKDDTFAAFK 534


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1138

 Score =  351 bits (900), Expect = 3e-94
 Identities = 178/378 (47%), Positives = 236/378 (62%), Gaps = 8/378 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARGRSFXXXXXXXXXIQ-- 174
            T+LY RDT+ L++V +AL +KE     +    S +Q +GL+ RGR            +  
Sbjct: 103  TILYSRDTLTLKEVYDALHTKEKMKKMVPSEGSNSQAEGLVVRGRQQKKNTKNQSRDKSS 162

Query: 175  ---RSRSKSRYKDLICNYCKKKGHIKKQCYKLK---RRNQSQEPAQRKKEGIAEADIAQE 336
               R RSKSR +   C YCK+ GH   +C+KL+   +R +   P  +K+E    A +  E
Sbjct: 163  SSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAIVTDE 222

Query: 337  ESDGSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNGVVLMGNNASCKVAG 516
            +SD  +L   +    +SD+WILD+ C++HMCPNRDWF++YE V  G VLMG++  C+VAG
Sbjct: 223  KSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAG 282

Query: 517  IGTIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMK 696
            IG +++KM DG IRTL+DVRH P+LK++LIS+  LD KGY+YSG DG+LK+  G + V+ 
Sbjct: 283  IGIVQIKMFDGCIRTLSDVRHFPNLKRSLISLRTLDRKGYKYSGGDGILKLILGNVAVVS 342

Query: 697  GRKIGGNLYVLEXXXXXXXXXXXXXXXXITKLWHMRLGHMSLKGLTLLSKRGLLCGQTTS 876
                  +                      T LWHMRLGHMS  GL  LSKRGLL GQ+  
Sbjct: 343  DSLSNSDA---------------------TNLWHMRLGHMSEIGLAELSKRGLLYGQSIG 381

Query: 877  DLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDDFSR 1056
             L FCEHCIFGK  RV FN   H T+GTLDY+HSDLWGP++  S GGA YM+T +DD+SR
Sbjct: 382  KLKFCEHCIFGKHKRVKFNTSTHTTEGTLDYVHSDLWGPARKTSFGGACYMMTIVDDYSR 441

Query: 1057 KVWVFFLKHKDQVFNTFK 1110
            KVW +FLKHK Q F+ FK
Sbjct: 442  KVWPYFLKHKYQAFDVFK 459


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  351 bits (900), Expect = 3e-94
 Identities = 186/379 (49%), Positives = 235/379 (62%), Gaps = 9/379 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARGRS----FXXXXXXXXX 168
            T+L  RD + L +V EAL ++E     +    S ++G+ L  RGRS    +         
Sbjct: 163  TILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVRGRSEQRTYNDSSDRDKS 222

Query: 169  IQRSRSKSRYKDLICNYCKKKGHIKKQCYKLKRRNQSQEPAQRKKEGIAEADIAQEESD- 345
              R RSKSR K   C YCKKK H  ++C+KL+ + +      RK +G A    + E SD 
Sbjct: 223  QSRGRSKSRGKKF-CKYCKKKNHFIEECWKLQNKEK------RKSDGKASVVTSAENSDS 275

Query: 346  GSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNG-VVLMGNNASCKVAGIG 522
            G  L V +   +S DEWILD+ CSFH+C NRDWFSSY+ V NG VV MG++   ++ GIG
Sbjct: 276  GDCLVVFAGCVASHDEWILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIG 335

Query: 523  TIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMKGR 702
            ++++K HDGM RTL DVRH+P + +NLIS+  LDA+GY+YS + GV+KVSKG+LV M G 
Sbjct: 336  SVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGD 395

Query: 703  KIGGNLYVLEXXXXXXXXXXXXXXXXI---TKLWHMRLGHMSLKGLTLLSKRGLLCGQTT 873
                NLYVL                     T LWHMRLGHMS  G+  L KR LL G T 
Sbjct: 396  MNSANLYVLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQ 455

Query: 874  SDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDDFS 1053
              + FCEHC+FGK  RV FN  +HRTKG LDY+H+DLWGPS+   LGGARYMLT IDD+S
Sbjct: 456  GKMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYS 515

Query: 1054 RKVWVFFLKHKDQVFNTFK 1110
            RKVW +FLKHKD  F  FK
Sbjct: 516  RKVWPYFLKHKDDTFAAFK 534


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  350 bits (897), Expect = 8e-94
 Identities = 186/379 (49%), Positives = 237/379 (62%), Gaps = 9/379 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARGRS----FXXXXXXXXX 168
            T+L  RD + L +V EAL ++E     +    S ++G+ L  +GRS    +         
Sbjct: 163  TILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVKGRSEQRTYNDSNDRDKS 222

Query: 169  IQRSRSKSRYKDLICNYCKKKGHIKKQCYKLKRRNQSQEPAQRKKEGIAEADIAQEESD- 345
              R RSKSR K   C YCKKK H  K+C+KL+ + +      RK +G A    + + SD 
Sbjct: 223  KSRGRSKSRGKKF-CKYCKKKIHFIKECWKLQNKEK------RKSDGKASVVTSAKNSDS 275

Query: 346  GSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNG-VVLMGNNASCKVAGIG 522
            G  L V +   +S DEWILD+ CSFH+  NRDWFSSY+ V NG VV MGN+   ++ GIG
Sbjct: 276  GDCLVVFAGCVASHDEWILDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIG 335

Query: 523  TIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMKGR 702
            ++++K HDG+ RTL DVRH+P + +NLIS+  LDA+GY+YSG+ GV+KVSKG+LV M G 
Sbjct: 336  SVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGD 395

Query: 703  KIGGNLYVLEXXXXXXXXXXXXXXXXI---TKLWHMRLGHMSLKGLTLLSKRGLLCGQTT 873
                NLYVL                     T LWHMRLGHMS  G+  L KR LL G T 
Sbjct: 396  MNSANLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQ 455

Query: 874  SDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDDFS 1053
             ++ FCE C+FGK  RV FN  +HRTKG LDY+H+DLWGPS+ PSLGGARYMLT IDD+S
Sbjct: 456  GNMKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYS 515

Query: 1054 RKVWVFFLKHKDQVFNTFK 1110
            RKVW +FLKHKD  F  FK
Sbjct: 516  RKVWPYFLKHKDDTFAAFK 534


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
            Group] gi|22655747|gb|AAN04164.1| Putative
            retrotransposon protein [Oryza sativa Japonica Group]
            gi|31431214|gb|AAP53029.1| retrotransposon protein,
            putative, Ty1-copia subclass, expressed [Oryza sativa
            Japonica Group]
          Length = 1229

 Score =  344 bits (883), Expect = 3e-92
 Identities = 185/379 (48%), Positives = 234/379 (61%), Gaps = 9/379 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARGRS----FXXXXXXXXX 168
            T+L  RD + L +V EAL ++E     +    S ++G  L  RGRS    +         
Sbjct: 160  TILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGKALQVRGRSEQRTYNDSNDRDKS 219

Query: 169  IQRSRSKSRYKDLICNYCKKKGHIKKQCYKLKRRNQSQEPAQRKKEGIAEADIAQEESDG 348
              R RSKSR K   C YCKKK H  ++C+KL+ + +      RK +G A    + E SD 
Sbjct: 220  QSRGRSKSRGKKF-CKYCKKKNHFIEECWKLQNKEK------RKSDGKASVVTSAENSDS 272

Query: 349  SVLSVRSAK-TSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNG-VVLMGNNASCKVAGIG 522
            +   V  A   +S DEWILD+ C F +C NRDWFSS++ V NG VV MG+N   ++ GIG
Sbjct: 273  ADCLVFFAGCVASHDEWILDTACLFLICINRDWFSSHKSVQNGDVVRMGDNNPREIMGIG 332

Query: 523  TIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMKGR 702
            ++++K HDGM RTL DVRH+P + +NLIS+  LDA+GY+YSG+ GV+KVSKG+LV M G 
Sbjct: 333  SVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGD 392

Query: 703  KIGGNLYVLEXXXXXXXXXXXXXXXXI---TKLWHMRLGHMSLKGLTLLSKRGLLCGQTT 873
                NLYVL                     T LWHMRLGHMS  G+  L KR LL G T 
Sbjct: 393  MNSANLYVLRGSTLHGSLTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQ 452

Query: 874  SDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDDFS 1053
             ++ FCEHC+FGK  RV FN  +HRTKG LDY+H+DLWGPS+ PSLGGA YMLT IDD+S
Sbjct: 453  GNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYS 512

Query: 1054 RKVWVFFLKHKDQVFNTFK 1110
            RKVW +FLKHKD  F  FK
Sbjct: 513  RKVWPYFLKHKDDTFAAFK 531


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  344 bits (883), Expect = 3e-92
 Identities = 168/318 (52%), Positives = 216/318 (67%), Gaps = 6/318 (1%)
 Frame = +1

Query: 175  RSRSKSRYKDLICNYCKKKGHIKKQCYKLK---RRNQSQEPAQRKKEGIAEADIAQEESD 345
            RS+S+ RYK   C YCK+ GH   +C+KL+   +R     P  +K++    A +  E+SD
Sbjct: 43   RSKSRGRYKS--CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEDEGKAAVVTDEKSD 100

Query: 346  GSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNGVVLMGNNASCKVAGIGT 525
              +L   +    +SD+WILD+ C++HMCPNRDWF++YE V  G VLMG++  C+VAGIGT
Sbjct: 101  AELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGT 160

Query: 526  IKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMKGRK 705
            +++KM DG IRTL+DVRH+P+LK++LIS+  LD KGY+YSG DG+LKV+KG+LVVMK   
Sbjct: 161  VQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADI 220

Query: 706  IGGNLYVLE---XXXXXXXXXXXXXXXXITKLWHMRLGHMSLKGLTLLSKRGLLCGQTTS 876
               NLY L+                    T LWHMRLGHMS  GL  LS RGLL GQ+  
Sbjct: 221  KSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIG 280

Query: 877  DLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDDFSR 1056
             L FCEHCIFGK  RV FN   H T+G LDY+HSDLWGP++  S GGARYM+T ++D+SR
Sbjct: 281  KLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSR 340

Query: 1057 KVWVFFLKHKDQVFNTFK 1110
            KVW +FLKHK Q FN FK
Sbjct: 341  KVWPYFLKHKYQAFNVFK 358


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  342 bits (878), Expect = 1e-91
 Identities = 183/381 (48%), Positives = 240/381 (62%), Gaps = 11/381 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNI-GGSTSENQGDGLMARGRSFXXXXXXXXXIQR 177
            T+L  RD + L++V +AL +KE     +    +S ++G+ L  RGR+           +R
Sbjct: 161  TILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENKTSNEKNYDRR 220

Query: 178  SRSKSRY--KDLICNYCKKKGHIKKQCYKLKRRNQSQEPAQRKKEG---IAEADIAQEES 342
             RSKS+       C YCK K H   +C K++ + +     + KK+G   +A A ++ ++S
Sbjct: 221  GRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKER-----KNKKDGKVSVASAAVSDDDS 275

Query: 343  DGSVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNG-VVLMGNNASCKVAGI 519
             G  L V +   +  DEWILDS CSFH+C  R+WFSSY+ V  G VV MG++  C + GI
Sbjct: 276  -GDCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGI 334

Query: 520  GTIKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMKG 699
            G++++K  DGM RTL +VR++P + +NLIS+  LDA+GY+YSG+DGVLKVSKG+LV +KG
Sbjct: 335  GSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKG 394

Query: 700  RKIGGNLYVLEXXXXXXXXXXXXXXXXI----TKLWHMRLGHMSLKGLTLLSKRGLLCGQ 867
                  LYVL                      T LWHMRLGHMS  G+T L KR LL G 
Sbjct: 395  DLNSAKLYVLRGCTLPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGY 454

Query: 868  TTSDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDD 1047
            T+S + FCEHCIFGK  RV FN  +H TKGTLDY+H+DLWGPSK PSLGGARYMLT IDD
Sbjct: 455  TSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDD 514

Query: 1048 FSRKVWVFFLKHKDQVFNTFK 1110
            +SRKVW +FLKHKD  F  FK
Sbjct: 515  YSRKVWPYFLKHKDDTFTAFK 535


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  341 bits (875), Expect = 3e-91
 Identities = 183/379 (48%), Positives = 236/379 (62%), Gaps = 9/379 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNI-GGSTSENQGDGLMARGRSFXXXXXXXXXIQR 177
            T+L  RD + L++V +AL +KE     +    +S ++G+ L  RGR+           +R
Sbjct: 159  TILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRR 218

Query: 178  SRSKSRY--KDLICNYCKKKGHIKKQCYKLKRRNQSQEPAQRKKEGIAEADIAQEESD-G 348
             RSKS+       C YCK K H   +C K+    Q++E   +K   ++ A  A  + D G
Sbjct: 219  GRSKSKPPGNKKFCVYCKLKNHNIDECKKV----QAKERKNKKDGKVSVASAAASDDDSG 274

Query: 349  SVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNG-VVLMGNNASCKVAGIGT 525
              L V +   +  DEWILDS CSFH+C  R+WFSSY+ V  G VV MG++  C + GIG+
Sbjct: 275  DCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGS 334

Query: 526  IKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMKGRK 705
            +++K  DGM RTL +VR++P + +NLIS+  LDA+GY+YSG+DGVLKVSKG+LV +KG  
Sbjct: 335  VQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDL 394

Query: 706  IGGNLYVLEXXXXXXXXXXXXXXXXI----TKLWHMRLGHMSLKGLTLLSKRGLLCGQTT 873
                LYVL                      T LWHMRLGHMS  G+T L KR LL G T+
Sbjct: 395  NSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTS 454

Query: 874  SDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDDFS 1053
            S + FCEHCIFGK  RV FN  +H TKGTLDY+H+DLWGPSK PSLGGARYMLT IDD+S
Sbjct: 455  SKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYS 514

Query: 1054 RKVWVFFLKHKDQVFNTFK 1110
            RKVW +FLKHKD  F  FK
Sbjct: 515  RKVWPYFLKHKDDTFTAFK 533


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  341 bits (875), Expect = 3e-91
 Identities = 183/379 (48%), Positives = 236/379 (62%), Gaps = 9/379 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNI-GGSTSENQGDGLMARGRSFXXXXXXXXXIQR 177
            T+L  RD + L++V +AL +KE     +    +S ++G+ L  RGR+           +R
Sbjct: 159  TILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRR 218

Query: 178  SRSKSRY--KDLICNYCKKKGHIKKQCYKLKRRNQSQEPAQRKKEGIAEADIAQEESD-G 348
             RSKS+       C YCK K H   +C K+    Q++E   +K   ++ A  A  + D G
Sbjct: 219  GRSKSKPPGNKKFCVYCKLKNHNIDECKKV----QAKERKNKKDGKVSVASAAASDDDSG 274

Query: 349  SVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNG-VVLMGNNASCKVAGIGT 525
              L V +   +  DEWILDS CSFH+C  R+WFSSY+ V  G VV MG++  C + GIG+
Sbjct: 275  DCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGS 334

Query: 526  IKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMKGRK 705
            +++K  DGM RTL +VR++P + +NLIS+  LDA+GY+YSG+DGVLKVSKG+LV +KG  
Sbjct: 335  VQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDV 394

Query: 706  IGGNLYVLEXXXXXXXXXXXXXXXXI----TKLWHMRLGHMSLKGLTLLSKRGLLCGQTT 873
                LYVL                      T LWHMRLGHMS  G+T L KR LL G T+
Sbjct: 395  NSAKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTS 454

Query: 874  SDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDDFS 1053
            S + FCEHCIFGK  RV FN  +H TKGTLDY+H+DLWGPSK PSLGGARYMLT IDD+S
Sbjct: 455  SKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYS 514

Query: 1054 RKVWVFFLKHKDQVFNTFK 1110
            RKVW +FLKHKD  F  FK
Sbjct: 515  RKVWPYFLKHKDDTFTAFK 533


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  341 bits (874), Expect = 4e-91
 Identities = 183/379 (48%), Positives = 236/379 (62%), Gaps = 9/379 (2%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNI-GGSTSENQGDGLMARGRSFXXXXXXXXXIQR 177
            T+L  RD + L++V +AL +KE     +    +S ++G+ L  RGR+           +R
Sbjct: 159  TILLSRDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRR 218

Query: 178  SRSKSRY--KDLICNYCKKKGHIKKQCYKLKRRNQSQEPAQRKKEGIAEADIAQEESD-G 348
             RSKS+       C YCK K H   +C K+    Q++E   +K   ++ A  A  + D G
Sbjct: 219  GRSKSKPPGNKKFCVYCKLKNHNIDECKKV----QAKERKNKKDGKVSVASAAASDDDSG 274

Query: 349  SVLSVRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNG-VVLMGNNASCKVAGIGT 525
              L V +   +  DEWILDS CSFH+C  R+WFSSY+ V  G VV MG++  C + GIG+
Sbjct: 275  DCLVVFAGCVAGHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGS 334

Query: 526  IKMKMHDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMKGRK 705
            +++K  DGM RTL +VR++P + +NLIS+  LDA+GY+YSG+DGVLKVSKG+LV +KG  
Sbjct: 335  VQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDL 394

Query: 706  IGGNLYVLEXXXXXXXXXXXXXXXXI----TKLWHMRLGHMSLKGLTLLSKRGLLCGQTT 873
                LYVL                      T LWHMRLGHMS  G+T L KR LL G T+
Sbjct: 395  NSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTS 454

Query: 874  SDLDFCEHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDDFS 1053
            S + FCEHCIFGK  RV FN  +H TKGTLDY+H+DLWGPSK PSLGGARYMLT IDD+S
Sbjct: 455  SKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYS 514

Query: 1054 RKVWVFFLKHKDQVFNTFK 1110
            RKVW +FLKHKD  F  FK
Sbjct: 515  RKVWPYFLKHKDDTFTAFK 533


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
            gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
            Japonica Group]
          Length = 778

 Score =  332 bits (852), Expect = 1e-88
 Identities = 176/373 (47%), Positives = 234/373 (62%), Gaps = 3/373 (0%)
 Frame = +1

Query: 1    TMLYGRDTIKLEDVQEALLSKESFDDNIGGSTSENQGDGLMARGRSFXXXXXXXXXIQRS 180
            T+LY RDT+ L++V +AL +KE     +    S +Q + L+    +            R 
Sbjct: 161  TILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAESLVVGVGN------------RR 208

Query: 181  RSKSRYKDLICNYCKKKGHIKKQCYKLKRRNQSQEPAQRKKEGIAEADIAQEESDGSVLS 360
            R+++  ++           IK Q   +   +QS E  ++++EG A A +  E+SD  +L 
Sbjct: 209  RTQTTNQE-----------IKAQVATVG--DQSPEAGKKEEEGKA-AVVTDEKSDAELLV 254

Query: 361  VRSAKTSSSDEWILDSGCSFHMCPNRDWFSSYEQVDNGVVLMGNNASCKVAGIGTIKMKM 540
                   +SD+WILD+ C++HMCPNRDWF++YE V  G VLMG++  C+VAGIGT+++KM
Sbjct: 255  AYVGCAQTSDQWILDTACTYHMCPNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKM 314

Query: 541  HDGMIRTLADVRHVPDLKKNLISMGALDAKGYRYSGADGVLKVSKGALVVMKGRKIGGNL 720
             DG IRTL+DVRH+P+LK++LIS   LD KGY+YSG DG+LKV+KG+LVVMK      NL
Sbjct: 315  FDGCIRTLSDVRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANL 374

Query: 721  YVLE---XXXXXXXXXXXXXXXXITKLWHMRLGHMSLKGLTLLSKRGLLCGQTTSDLDFC 891
            Y L                     T LWHMRLGHMS  GL  LSKRGLL GQ+   L FC
Sbjct: 375  YHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFC 434

Query: 892  EHCIFGKQTRVTFNKGIHRTKGTLDYIHSDLWGPSKVPSLGGARYMLTFIDDFSRKVWVF 1071
            EHCIFGK  RV FN   H T+G LDY+HSDLWGP++  S GGARY++T +DD+SRKVW +
Sbjct: 435  EHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPY 494

Query: 1072 FLKHKDQVFNTFK 1110
            FLKHK Q F+ FK
Sbjct: 495  FLKHKYQAFDVFK 507