BLASTX nr result
ID: Rauwolfia21_contig00014069
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00014069
(1145 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAP62488.1| RNA polymerase beta' subunit-2 [Ceratophyllum de... 54 5e-07
ref|YP_001542437.1| RNA polymerase beta'' subunit [Ceratophyllum... 54 5e-07
gb|ABD93832.1| RNA polymerase beta chain [Ceratophyllum submersum] 54 5e-07
gb|ABD93831.1| RNA polymerase beta chain [Ceratophyllum demersum] 54 5e-07
ref|YP_008814933.1| RNA polymerase beta' subunit (chloroplast) [... 54 6e-07
gb|ABV65725.1| RNA polymerase beta'' subunit (chloroplast) [Corn... 54 6e-07
gb|AGM15017.1| RNA polymerase beta'' subunit (chloroplast) [Pana... 54 6e-07
ref|YP_008815194.1| RNA polymerase beta' subunit (chloroplast) [... 54 6e-07
ref|YP_008815107.1| RNA polymerase beta' subunit (chloroplast) [... 54 6e-07
sp|Q68S16.1|RPOC2_PANGI RecName: Full=DNA-directed RNA polymeras... 54 6e-07
ref|YP_004935542.1| RNA polymerase beta'' subunit (chloroplast) ... 54 6e-07
ref|YP_008815020.1| RNA polymerase beta' subunit (chloroplast) [... 54 6e-07
ref|YP_086956.2| RNA polymerase beta'' subunit [Panax ginseng] 54 6e-07
gb|ABD93760.1| RNA polymerase beta chain [Hedera helix] 54 6e-07
gb|ABD93753.1| RNA polymerase beta chain [Cornus florida] 54 6e-07
gb|ABV65751.1| RNA polymerase beta'' subunit, partial (chloropla... 54 1e-06
gb|ABD93713.1| RNA polymerase beta chain [Leea guineensis] 54 1e-06
gb|AGJ51247.1| RNA polymerase beta'' subunit (chloroplast) [Sola... 53 1e-06
gb|ADD31150.1| RNA polymerase beta'' subunit protein [Aucuba jap... 54 1e-06
gb|AEM44889.1| RNA polymerase beta chain [Galium aparine] 53 1e-06
>emb|CAP62488.1| RNA polymerase beta' subunit-2 [Ceratophyllum demersum]
Length = 1390
Score = 54.3 bits (129), Expect(2) = 5e-07
Identities = 43/109 (39%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIEQ 309
G T H Y E YEGDTL I EK +SGDIT+ ++LEKR+E
Sbjct: 1110 GATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRVEG 1169
Query: 310 C*YSTNS--QIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
IP GFLI A LT AQSCI LV + Y + IH+++
Sbjct: 1170 WNERVTRILGIPWGFLIGAELTIAQSCISLVNKIQKVYRSQGVQIHNRH 1218
Score = 27.3 bits (59), Expect(2) = 5e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 1214 IHNRHIEIVVRQITSKV 1230
>ref|YP_001542437.1| RNA polymerase beta'' subunit [Ceratophyllum demersum]
gi|212277669|sp|A8SE78.1|RPOC2_CERDE RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|148508433|gb|ABQ81440.1| RNA polymerase beta'' subunit
[Ceratophyllum demersum]
Length = 1390
Score = 54.3 bits (129), Expect(2) = 5e-07
Identities = 43/109 (39%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIEQ 309
G T H Y E YEGDTL I EK +SGDIT+ ++LEKR+E
Sbjct: 1110 GATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRVEG 1169
Query: 310 C*YSTNS--QIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
IP GFLI A LT AQSCI LV + Y + IH+++
Sbjct: 1170 WNERVTRILGIPWGFLIGAELTIAQSCISLVNKIQKVYRSQGVQIHNRH 1218
Score = 27.3 bits (59), Expect(2) = 5e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 1214 IHNRHIEIVVRQITSKV 1230
>gb|ABD93832.1| RNA polymerase beta chain [Ceratophyllum submersum]
Length = 806
Score = 54.3 bits (129), Expect(2) = 5e-07
Identities = 43/109 (39%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIEQ 309
G T H Y E YEGDTL I EK +SGDIT+ ++LEKR+E
Sbjct: 605 GATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRVEG 664
Query: 310 C*YSTNS--QIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
IP GFLI A LT AQSCI LV + Y + IH+++
Sbjct: 665 WNERVTRILGIPWGFLIGAELTIAQSCISLVNKIQKVYRSQGVQIHNRH 713
Score = 27.3 bits (59), Expect(2) = 5e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 709 IHNRHIEIVVRQITSKV 725
>gb|ABD93831.1| RNA polymerase beta chain [Ceratophyllum demersum]
Length = 791
Score = 54.3 bits (129), Expect(2) = 5e-07
Identities = 43/109 (39%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIEQ 309
G T H Y E YEGDTL I EK +SGDIT+ ++LEKR+E
Sbjct: 590 GATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEKRVEG 649
Query: 310 C*YSTNS--QIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
IP GFLI A LT AQSCI LV + Y + IH+++
Sbjct: 650 WNERVTRILGIPWGFLIGAELTIAQSCISLVNKIQKVYRSQGVQIHNRH 698
Score = 27.3 bits (59), Expect(2) = 5e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 694 IHNRHIEIVVRQITSKV 710
>ref|YP_008814933.1| RNA polymerase beta' subunit (chloroplast) [Brassaiopsis hainla]
gi|458599182|gb|AGG39033.1| RNA polymerase beta' subunit
(chloroplast) [Brassaiopsis hainla]
Length = 1398
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 44/110 (40%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIE- 306
G T H Y E YEGDTL I EK +SGDIT+ M+LEKR+E
Sbjct: 1122 GATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEG 1181
Query: 307 --QC*YSTNSQIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
+C + N IP GFLI A LT QS I LV + Y + IH+++
Sbjct: 1182 WNEC-ITRNLGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRH 1230
Score = 26.9 bits (58), Expect(2) = 6e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 1226 IHNRHIEIIVRQITSKV 1242
>gb|ABV65725.1| RNA polymerase beta'' subunit (chloroplast) [Cornus florida]
Length = 1391
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 45/110 (40%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIE- 306
G T H Y E YEGDTL I EK +SGDIT+ M+LEKR+E
Sbjct: 1114 GATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEG 1173
Query: 307 --QC*YSTNSQIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
+C + IP GFLI A LT AQS I LV R Y + IH+++
Sbjct: 1174 WNEC-ITRILGIPWGFLIGAELTIAQSRISLVNKIQRVYRSQGVQIHNRH 1222
Score = 26.9 bits (58), Expect(2) = 6e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 1218 IHNRHIEIIVRQITSKV 1234
>gb|AGM15017.1| RNA polymerase beta'' subunit (chloroplast) [Panax ginseng]
gi|506444543|gb|AGM15103.1| RNA polymerase beta'' subunit
(chloroplast) [Panax ginseng] gi|506444659|gb|AGM15189.1|
RNA polymerase beta'' subunit (chloroplast) [Panax
ginseng]
Length = 1387
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 44/110 (40%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIE- 306
G T H Y E YEGDTL I EK +SGDIT+ M+LEKR+E
Sbjct: 1111 GATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEG 1170
Query: 307 --QC*YSTNSQIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
+C + N IP GFLI A LT QS I LV + Y + IH+++
Sbjct: 1171 WNEC-ITRNLGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRH 1219
Score = 26.9 bits (58), Expect(2) = 6e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 1215 IHNRHIEIIVRQITSKV 1231
>ref|YP_008815194.1| RNA polymerase beta' subunit (chloroplast) [Kalopanax septemlobus]
gi|458599602|gb|AGG39294.1| RNA polymerase beta' subunit
(chloroplast) [Kalopanax septemlobus]
Length = 1387
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 44/110 (40%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIE- 306
G T H Y E YEGDTL I EK +SGDIT+ M+LEKR+E
Sbjct: 1111 GATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEG 1170
Query: 307 --QC*YSTNSQIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
+C + N IP GFLI A LT QS I LV + Y + IH+++
Sbjct: 1171 WNEC-ITRNLGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRH 1219
Score = 26.9 bits (58), Expect(2) = 6e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 1215 IHNRHIEIIVRQITSKV 1231
>ref|YP_008815107.1| RNA polymerase beta' subunit (chloroplast) [Schefflera delavayi]
gi|458599514|gb|AGG39207.1| RNA polymerase beta' subunit
(chloroplast) [Schefflera delavayi]
Length = 1387
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 44/110 (40%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIE- 306
G T H Y E YEGDTL I EK +SGDIT+ M+LEKR+E
Sbjct: 1111 GATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEG 1170
Query: 307 --QC*YSTNSQIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
+C + N IP GFLI A LT QS I LV + Y + IH+++
Sbjct: 1171 WNEC-ITRNLGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRH 1219
Score = 26.9 bits (58), Expect(2) = 6e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 1215 IHNRHIEIIVRQITSKV 1231
>sp|Q68S16.1|RPOC2_PANGI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|51235303|gb|AAT98499.1| RNA polymerase beta II subunit
[Panax ginseng]
Length = 1387
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 44/110 (40%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIE- 306
G T H Y E YEGDTL I EK +SGDIT+ M+LEKR+E
Sbjct: 1111 GATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEG 1170
Query: 307 --QC*YSTNSQIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
+C + N IP GFLI A LT QS I LV + Y + IH+++
Sbjct: 1171 WNEC-ITRNLGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRH 1219
Score = 26.9 bits (58), Expect(2) = 6e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 1215 IHNRHIEIIVRQITSKV 1231
>ref|YP_004935542.1| RNA polymerase beta'' subunit (chloroplast) [Eleutherococcus
senticosus] gi|347448196|gb|AEO92608.1| RNA polymerase
beta'' subunit (chloroplast) [Eleutherococcus senticosus]
Length = 1387
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 44/110 (40%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIE- 306
G T H Y E YEGDTL I EK +SGDIT+ M+LEKR+E
Sbjct: 1111 GATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEG 1170
Query: 307 --QC*YSTNSQIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
+C + N IP GFLI A LT QS I LV + Y + IH+++
Sbjct: 1171 WNEC-ITRNLGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRH 1219
Score = 26.9 bits (58), Expect(2) = 6e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 1215 IHNRHIEIIVRQITSKV 1231
>ref|YP_008815020.1| RNA polymerase beta' subunit (chloroplast) [Metapanax delavayi]
gi|458599361|gb|AGG39120.1| RNA polymerase beta' subunit
(chloroplast) [Metapanax delavayi]
Length = 1384
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 44/110 (40%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIE- 306
G T H Y E YEGDTL I EK +SGDIT+ M+LEKR+E
Sbjct: 1108 GATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEG 1167
Query: 307 --QC*YSTNSQIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
+C + N IP GFLI A LT QS I LV + Y + IH+++
Sbjct: 1168 WNEC-ITRNLGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRH 1216
Score = 26.9 bits (58), Expect(2) = 6e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 1212 IHNRHIEIIVRQITSKV 1228
>ref|YP_086956.2| RNA polymerase beta'' subunit [Panax ginseng]
Length = 1383
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 44/110 (40%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIE- 306
G T H Y E YEGDTL I EK +SGDIT+ M+LEKR+E
Sbjct: 1107 GATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEG 1166
Query: 307 --QC*YSTNSQIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
+C + N IP GFLI A LT QS I LV + Y + IH+++
Sbjct: 1167 WNEC-ITRNLGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRH 1215
Score = 26.9 bits (58), Expect(2) = 6e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 1211 IHNRHIEIIVRQITSKV 1227
>gb|ABD93760.1| RNA polymerase beta chain [Hedera helix]
Length = 863
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 44/110 (40%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIE- 306
G T H Y E YEGDTL I EK +SGDIT+ M+LEKR+E
Sbjct: 662 GATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEG 721
Query: 307 --QC*YSTNSQIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
+C + N IP GFLI A LT QS I LV + Y + IH+++
Sbjct: 722 WNEC-ITRNLGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRH 770
Score = 26.9 bits (58), Expect(2) = 6e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 766 IHNRHIEIIVRQITSKV 782
>gb|ABD93753.1| RNA polymerase beta chain [Cornus florida]
Length = 812
Score = 54.3 bits (129), Expect(2) = 6e-07
Identities = 45/110 (40%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIE- 306
G T H Y E YEGDTL I EK +SGDIT+ M+LEKR+E
Sbjct: 611 GATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEG 670
Query: 307 --QC*YSTNSQIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
+C + IP GFLI A LT AQS I LV R Y + IH+++
Sbjct: 671 WNEC-ITRILGIPWGFLIGAELTIAQSRISLVNKIQRVYRSQGVQIHNRH 719
Score = 26.9 bits (58), Expect(2) = 6e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 715 IHNRHIEIIVRQITSKV 731
>gb|ABV65751.1| RNA polymerase beta'' subunit, partial (chloroplast) [Leea
guineensis]
Length = 1260
Score = 53.5 bits (127), Expect(2) = 1e-06
Identities = 47/117 (40%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Frame = +1
Query: 121 LTCFGETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEK 297
L G T H Y E YEGDTL I EK +SGDIT+ M+LEK
Sbjct: 1059 LATLGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEK 1118
Query: 298 RIEQC*YSTNSQ------IPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
RIE S N IP GFLI A LT AQS I LV + Y + IH+++
Sbjct: 1119 RIE----SWNEHITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRH 1171
Score = 26.9 bits (58), Expect(2) = 1e-06
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 1167 IHNRHIEIIVRQITSKV 1183
>gb|ABD93713.1| RNA polymerase beta chain [Leea guineensis]
Length = 829
Score = 53.5 bits (127), Expect(2) = 1e-06
Identities = 47/117 (40%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Frame = +1
Query: 121 LTCFGETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEK 297
L G T H Y E YEGDTL I EK +SGDIT+ M+LEK
Sbjct: 633 LATLGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEK 692
Query: 298 RIEQC*YSTNSQ------IPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
RIE S N IP GFLI A LT AQS I LV + Y + IH+++
Sbjct: 693 RIE----SWNEHITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRH 745
Score = 26.9 bits (58), Expect(2) = 1e-06
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 741 IHNRHIEIIVRQITSKV 757
>gb|AGJ51247.1| RNA polymerase beta'' subunit (chloroplast) [Solanum carolinense]
Length = 1395
Score = 53.1 bits (126), Expect(2) = 1e-06
Identities = 42/92 (45%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIE- 306
G T H Y E YEGDTL I EK +SGDIT+ M+LEKR+E
Sbjct: 1116 GATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEV 1175
Query: 307 --QC*YSTNSQIPCGFLITAMLTTAQSCICLV 396
+C T IP GFLI A LT AQS I LV
Sbjct: 1176 WNKCIPRTLG-IPWGFLIGAELTIAQSRISLV 1206
Score = 26.9 bits (58), Expect(2) = 1e-06
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 1220 IHNRHIEIIVRQITSKV 1236
>gb|ADD31150.1| RNA polymerase beta'' subunit protein [Aucuba japonica]
Length = 1390
Score = 53.5 bits (127), Expect(2) = 1e-06
Identities = 45/110 (40%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Frame = +1
Query: 133 GETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXXXXXXXXXXXXQMSLEKRIE- 306
G T H Y E YEGDTL I EK +SGDIT+ M+LEKR+E
Sbjct: 1114 GATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEG 1173
Query: 307 --QC*YSTNSQIPCGFLITAMLTTAQSCICLV*MTPRWY----ILIHSQY 438
+C + IP GFLI A LT AQS I LV R Y + IH+++
Sbjct: 1174 WNEC-ITRILGIPWGFLIGAELTIAQSRISLVNKIQRVYRSQGVQIHNRH 1222
Score = 26.6 bits (57), Expect(2) = 1e-06
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKVGKSCQSQNCALFVADLNGI 535
IHN H+EI ++ TSKV S + +L G+
Sbjct: 1218 IHNRHLEIIVRQITSKVLVSEDGMSNVFLPGELIGL 1253
>gb|AEM44889.1| RNA polymerase beta chain [Galium aparine]
Length = 462
Score = 53.1 bits (126), Expect(2) = 1e-06
Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Frame = +1
Query: 73 VYSNTFCFLFRNIFYSLTCFGETYHVRYPEDPYEGDTLHACIDEKLKSGDITRD-XXXXX 249
++ C + R+ L G T H Y E YEGD L I EK +SGDIT+
Sbjct: 282 IFVQVDCVVIRSAKPYLATPGATVHGHYGEIRYEGDILVTFIYEKSRSGDITQGLPKVEQ 341
Query: 250 XXXXXXXXXXQMSLEKRIE---QC*YSTNSQIPCGFLITAMLTTAQSCICLV*MTPRWY- 417
M+LEKRIE +C + IP GFLI A LT AQS I LV + Y
Sbjct: 342 VLEVRSIDSISMNLEKRIEGWNKC-ITKILGIPWGFLIGAKLTIAQSRISLVNKIQKVYR 400
Query: 418 ---ILIHSQY 438
+ IH+++
Sbjct: 401 SQGVQIHNKH 410
Score = 26.9 bits (58), Expect(2) = 1e-06
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 428 IHNMHIEIALKSFTSKV 478
IHN HIEI ++ TSKV
Sbjct: 406 IHNKHIEIIVRQITSKV 422