BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00013360
         (2681 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synt...   892   0.0  
ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synt...   879   0.0  
emb|CBI34194.3| unnamed protein product [Vitis vinifera]              879   0.0  
ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synt...   866   0.0  
ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synt...   864   0.0  
gb|EOY11114.1| Pseudouridine synthase family protein isoform 2 [...   862   0.0  
ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synt...   852   0.0  
gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus no...   844   0.0  
ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Popu...   843   0.0  
ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citr...   842   0.0  
gb|EOY11113.1| Pseudouridine synthase family protein, putative i...   838   0.0  
ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synt...   837   0.0  
gb|EMJ09385.1| hypothetical protein PRUPE_ppa020985mg [Prunus pe...   835   0.0  
ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ric...   828   0.0  
ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana] g...   809   0.0  
ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C...   806   0.0  
ref|XP_006577278.1| PREDICTED: multisubstrate pseudouridine synt...   793   0.0  
gb|ESW19147.1| hypothetical protein PHAVU_006G100200g [Phaseolus...   788   0.0  
ref|XP_003553755.1| PREDICTED: multisubstrate pseudouridine synt...   785   0.0  
ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata...   781   0.0  

>ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Vitis
            vinifera]
          Length = 694

 Score =  892 bits (2304), Expect = 0.0
 Identities = 461/667 (69%), Positives = 522/667 (78%), Gaps = 2/667 (0%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELVEETEVKASDEPNKSYDAEIQTFRALAADSDA 180
            RY DFIVNEVD +G VV LTSL+APPE +E+ E K SD+ NK Y +EI+ FR+L  DSD 
Sbjct: 28   RYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNETKISDQSNKGYASEIELFRSLVGDSDV 87

Query: 181  DMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITSKC 360
            + LK  ID++ SGIE  + PIVLS SSDKSHRTA+HNFFKE LKFLVTDT+DGPD +SKC
Sbjct: 88   ECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRTAVHNFFKENLKFLVTDTIDGPDTSSKC 147

Query: 361  IRVRLNTXXXXXXXXXXXXX-NRDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEALG 537
            IRVRLN+              +R DKP+DSRGSDNW E +GKFLRFHLYKENKDTQEA+G
Sbjct: 148  IRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGSDNWSEHVGKFLRFHLYKENKDTQEAIG 207

Query: 538  VIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVNEG 717
            +IGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQ A+RLAALNERLIGIK+GDFCHV EG
Sbjct: 208  LIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQHANRLAALNERLIGIKVGDFCHVREG 267

Query: 718  LVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIGAT 897
            LVLGQL GNRFTITLRGVVA+ E+ IK   +AL + GFINYFGLQRFGS SVPTHLIGA 
Sbjct: 268  LVLGQLLGNRFTITLRGVVADSEETIKASADALGRLGFINYFGLQRFGSGSVPTHLIGAA 327

Query: 898  LVRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQCLKK 1077
            L+RGEW+TAV LILDP+EGE++AIR  REYYKE+ DIEGTLRQ PRHLVAE+AILQCLKK
Sbjct: 328  LLRGEWETAVSLILDPREGERDAIRKAREYYKESDDIEGTLRQFPRHLVAERAILQCLKK 387

Query: 1078 SPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCTRK 1257
             PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMR++ YG  QVVLGDLVYC      K
Sbjct: 388  YPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQNYGTKQVVLGDLVYCKGDNAEK 447

Query: 1258 EIGTAYSECQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVDDVVLP 1437
                  SE  D   +D  DS H DEISETD+P+E    VKAL  EDL  G Y +DDVVLP
Sbjct: 448  VTRVVNSEFDDDGCSDAFDSSHFDEISETDLPEERNDPVKALDAEDLLTGNYTIDDVVLP 507

Query: 1438 LPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPKDYEWE 1617
            LPGSR IYP NDI + YHD AKKD+ISL ESAHS+KEFSIT+MTGG+RRVFQKP D+EWE
Sbjct: 508  LPGSRAIYPTNDIAQVYHDFAKKDAISLTESAHSVKEFSITNMTGGFRRVFQKPIDFEWE 567

Query: 1618 MLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYEEQSASFSGGLKDS 1797
            +LTY +GN+PLAETD+D I KS+ +  +   D  NG  ++E+     +QS SF   +  S
Sbjct: 568  LLTYTEGNIPLAETDWDKITKSKPSNIIGGEDSRNGN-EKENSFQCMKQSESFEHNVNLS 626

Query: 1798 AKDNEAES-DGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLKTSTSV 1974
              +NE       G  Q+E    SG+   E QRALKLSFTLPASCYATMAIRELLKTSTSV
Sbjct: 627  TDNNEPNGVTEIGLPQVEPQFESGA--PEAQRALKLSFTLPASCYATMAIRELLKTSTSV 684

Query: 1975 AFHKTLN 1995
            AF KTLN
Sbjct: 685  AFQKTLN 691


>ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            tuberosum]
          Length = 685

 Score =  879 bits (2271), Expect = 0.0
 Identities = 460/666 (69%), Positives = 527/666 (79%), Gaps = 1/666 (0%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELVEETEVKASDEPNKSYDAEIQTFRALAADSDA 180
            RYSDFIVNEVDL+  VV LT LEAP E  E  +V  SD+ N+SY  EI++FR+LA +SDA
Sbjct: 28   RYSDFIVNEVDLDENVVHLTLLEAPKECSENKDVNISDQLNRSYVTEIESFRSLAGNSDA 87

Query: 181  DMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITSKC 360
            D LK FID++ SG +V+ E IVLSPSSDKSHRTA+HNFFKE+LKFLVTDT+DG +  SKC
Sbjct: 88   DKLKAFIDELNSGADVSDESIVLSPSSDKSHRTAIHNFFKERLKFLVTDTIDGVEDQSKC 147

Query: 361  IRVRLNTXXXXXXXXXXXXX-NRDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEALG 537
            +RVRLN               +RDDK YDSRGSD+WP  LGKFLRFHL+KENKDTQEAL 
Sbjct: 148  VRVRLNNDRNNGRGRSSRKRKDRDDKRYDSRGSDSWPGHLGKFLRFHLFKENKDTQEALN 207

Query: 538  VIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVNEG 717
            VI KMLG+Q RSFGFAGTKDKR+VSTQRVTVFKQ+AS+LAALN+RLIGIK+GDFCHV EG
Sbjct: 208  VIAKMLGVQLRSFGFAGTKDKRAVSTQRVTVFKQQASKLAALNKRLIGIKVGDFCHVKEG 267

Query: 718  LVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIGAT 897
            L+LGQL+GNRFTITLRGV AE EDIIK    AL K GFINYFGLQRFGSSSVPTHLIGA 
Sbjct: 268  LLLGQLYGNRFTITLRGVSAESEDIIKASAVALGKHGFINYFGLQRFGSSSVPTHLIGAA 327

Query: 898  LVRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQCLKK 1077
            L+RGEWK AV LILDP+EGEK AI  VREYYKE+GDI+GTLRQLPR+LVAEKAILQCLK+
Sbjct: 328  LLRGEWKAAVSLILDPREGEKNAISTVREYYKESGDIDGTLRQLPRYLVAEKAILQCLKR 387

Query: 1078 SPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCTRK 1257
            SPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMR++K+G DQVVLGDLVY  E+   K
Sbjct: 388  SPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKHGFDQVVLGDLVYSKEEYKVK 447

Query: 1258 EIGTAYSECQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVDDVVLP 1437
            E  +  +EC+D   N+  D  +LDEISETD+P+E    VK + EEDL +G Y +DDV+LP
Sbjct: 448  E--SFVAECEDVNDNNMDDYSNLDEISETDLPEERNIPVKVINEEDLKSGTYAIDDVLLP 505

Query: 1438 LPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPKDYEWE 1617
            LPGSRVIYP NDI E Y DLA+KD ISL E+AH IKEFSIT+MTG YRRVFQKPKD+EWE
Sbjct: 506  LPGSRVIYPSNDIGEVYCDLAQKDDISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWE 565

Query: 1618 MLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYEEQSASFSGGLKDS 1797
            +L+Y DG +PLAETDFDVI  S  + KV E D  NG  +        + SA   GG   S
Sbjct: 566  LLSYTDGTIPLAETDFDVIANSVKS-KVREEDPTNGSKELP-----ADSSAISVGGDMLS 619

Query: 1798 AKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLKTSTSVA 1977
             K  E + +    +Q E    SG + +E+Q ALKLSFTLPASCYATMA+RELLKTSTSVA
Sbjct: 620  GKVCEEKINNEAGMQSE-KSQSGGNAEESQMALKLSFTLPASCYATMAVRELLKTSTSVA 678

Query: 1978 FHKTLN 1995
            FHK+LN
Sbjct: 679  FHKSLN 684


>emb|CBI34194.3| unnamed protein product [Vitis vinifera]
          Length = 693

 Score =  879 bits (2271), Expect = 0.0
 Identities = 457/667 (68%), Positives = 519/667 (77%), Gaps = 2/667 (0%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELVEETEVKASDEPNKSYDAEIQTFRALAADSDA 180
            RY DFIVNEVD +G VV LTSL+APPE +E+ E K SD+ NK Y +EI+ FR+L  DSD 
Sbjct: 28   RYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNETKISDQSNKGYASEIELFRSLVGDSDV 87

Query: 181  DMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITSKC 360
            + LK  ID++ SGIE  + PIVLS SSDKSHRTA+HNFFKE LKFLVTDT+DGPD +SKC
Sbjct: 88   ECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRTAVHNFFKENLKFLVTDTIDGPDTSSKC 147

Query: 361  IRVRLNTXXXXXXXXXXXXX-NRDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEALG 537
            IRVRLN+              +R DKP+DSRGSDNW E +GKFLRFHLYKENKDTQEA+G
Sbjct: 148  IRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGSDNWSEHVGKFLRFHLYKENKDTQEAIG 207

Query: 538  VIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVNEG 717
            +IGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQ A+RLAALNERLIGIK+GDFCHV EG
Sbjct: 208  LIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQHANRLAALNERLIGIKVGDFCHVREG 267

Query: 718  LVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIGAT 897
            LVLGQL GNRFTITLRGVVA+ E+ IK   +AL + GFINYFGLQRFGS SVPTHLIGA 
Sbjct: 268  LVLGQLLGNRFTITLRGVVADSEETIKASADALGRLGFINYFGLQRFGSGSVPTHLIGAA 327

Query: 898  LVRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQCLKK 1077
            L+RGEW+TAV LILDP+EG+   ++  REYYKE+ DIEGTLRQ PRHLVAE+AILQCLKK
Sbjct: 328  LLRGEWETAVSLILDPREGDILLLKA-REYYKESDDIEGTLRQFPRHLVAERAILQCLKK 386

Query: 1078 SPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCTRK 1257
             PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMR++ YG  QVVLGDLVYC      K
Sbjct: 387  YPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQNYGTKQVVLGDLVYCKGDNAEK 446

Query: 1258 EIGTAYSECQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVDDVVLP 1437
                  SE  D   +D  DS H DEISETD+P+E    VKAL  EDL  G Y +DDVVLP
Sbjct: 447  VTRVVNSEFDDDGCSDAFDSSHFDEISETDLPEERNDPVKALDAEDLLTGNYTIDDVVLP 506

Query: 1438 LPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPKDYEWE 1617
            LPGSR IYP NDI + YHD AKKD+ISL ESAHS+KEFSIT+MTGG+RRVFQKP D+EWE
Sbjct: 507  LPGSRAIYPTNDIAQVYHDFAKKDAISLTESAHSVKEFSITNMTGGFRRVFQKPIDFEWE 566

Query: 1618 MLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYEEQSASFSGGLKDS 1797
            +LTY +GN+PLAETD+D I KS+ +  +   D  NG  ++E+     +QS SF   +  S
Sbjct: 567  LLTYTEGNIPLAETDWDKITKSKPSNIIGGEDSRNGN-EKENSFQCMKQSESFEHNVNLS 625

Query: 1798 AKDNEAES-DGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLKTSTSV 1974
              +NE       G  Q+E    SG+   E QRALKLSFTLPASCYATMAIRELLKTSTSV
Sbjct: 626  TDNNEPNGVTEIGLPQVEPQFESGA--PEAQRALKLSFTLPASCYATMAIRELLKTSTSV 683

Query: 1975 AFHKTLN 1995
            AF KTLN
Sbjct: 684  AFQKTLN 690


>ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            lycopersicum]
          Length = 685

 Score =  866 bits (2237), Expect = 0.0
 Identities = 455/666 (68%), Positives = 521/666 (78%), Gaps = 1/666 (0%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELVEETEVKASDEPNKSYDAEIQTFRALAADSDA 180
            RYSDFIVNEVDL+  VV L SLEAP E  E  +V  SD+ N+SY  EI++FR+LA +SDA
Sbjct: 28   RYSDFIVNEVDLDENVVHLNSLEAPKECSENKDVNISDQLNRSYVTEIESFRSLAGNSDA 87

Query: 181  DMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITSKC 360
            D LK FID++ SG +V+ E IVLSPSSDKSHRT +HNFFKE+LKFLVTDT+DG +  SKC
Sbjct: 88   DKLKAFIDELNSGADVSDESIVLSPSSDKSHRTEIHNFFKERLKFLVTDTIDGVEDQSKC 147

Query: 361  IRVRLNTXXXXXXXXXXXXX-NRDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEALG 537
            +RVRLN               +R+DK YDSRGSD+WP  LGKFLRFHL+KENKDTQEAL 
Sbjct: 148  VRVRLNNDRNNGRGRYSRKRKDRNDKRYDSRGSDSWPGHLGKFLRFHLFKENKDTQEALN 207

Query: 538  VIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVNEG 717
            VI KMLG+Q RSFGFAGTKDKR+VSTQRVTVFKQ+AS+LAALN+RLIGIK+GDFCHV EG
Sbjct: 208  VIAKMLGVQLRSFGFAGTKDKRAVSTQRVTVFKQQASKLAALNKRLIGIKVGDFCHVKEG 267

Query: 718  LVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIGAT 897
            L+LGQL+GNRFTITLRGV AE EDIIK    AL K GFINYFGLQRFGSSSVPTHLIGA 
Sbjct: 268  LLLGQLYGNRFTITLRGVSAESEDIIKASAVALGKHGFINYFGLQRFGSSSVPTHLIGAA 327

Query: 898  LVRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQCLKK 1077
            L+RGEWK AV LILDP+EGEK  I  VREYYKE+GDI+GTLRQLPR+LVAEKAILQ LK+
Sbjct: 328  LLRGEWKAAVSLILDPREGEKNTISTVREYYKESGDIDGTLRQLPRYLVAEKAILQSLKR 387

Query: 1078 SPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCTRK 1257
            SPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMR++K+G DQVVLGDLVY  E    K
Sbjct: 388  SPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKHGFDQVVLGDLVYSKEDYKVK 447

Query: 1258 EIGTAYSECQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVDDVVLP 1437
            E  +  +EC+D   N+  D  +LDEISETD+P+E    VK + EEDL +G Y +DDV+LP
Sbjct: 448  E--SFVAECEDVNDNNMDDYSNLDEISETDLPEERNIPVKVINEEDLKSGTYTIDDVLLP 505

Query: 1438 LPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPKDYEWE 1617
            L GSRVIYP NDI E Y DLA+KD ISL E+AH IKEFSIT+MTG YRRVFQKPKD+EWE
Sbjct: 506  LSGSRVIYPSNDIGEVYRDLAQKDGISLTETAHKIKEFSITNMTGAYRRVFQKPKDFEWE 565

Query: 1618 MLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYEEQSASFSGGLKDS 1797
            +L+Y DG +PLAETDFDVI KS  + KV E    NG  +        + SA   GG   S
Sbjct: 566  LLSYTDGTIPLAETDFDVIAKSVKS-KVIEEVPSNGSKELP-----ADSSAISVGGDMLS 619

Query: 1798 AKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLKTSTSVA 1977
             K  E   +    +Q E    SG + +E+Q ALKLSFTLPASCYATMA+RELLKTSTSVA
Sbjct: 620  GKVCEETINNEAGMQSE-KSQSGGNAEESQMALKLSFTLPASCYATMAVRELLKTSTSVA 678

Query: 1978 FHKTLN 1995
            FHK+LN
Sbjct: 679  FHKSLN 684


>ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X1
            [Citrus sinensis]
          Length = 739

 Score =  864 bits (2233), Expect = 0.0
 Identities = 448/672 (66%), Positives = 522/672 (77%), Gaps = 7/672 (1%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPE--LVEETEVKASDEPNKSYDAEIQTFRALAADS 174
            RY DFIVNEVD + KVV LTSL+ PPE   VE  E KASD+ N+SY +EI++FR+LA DS
Sbjct: 72   RYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVEHNETKASDQLNRSYASEIESFRSLAGDS 131

Query: 175  DADMLKTFIDKIGSGI-EVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDIT 351
            DA  L+T I+++ SG  E +I PIVLS +SDKSHRTA+HNFFK+  KFLVTDTVDGPD +
Sbjct: 132  DAQCLETLINQVTSGKNEDSIPPIVLSANSDKSHRTAIHNFFKDNFKFLVTDTVDGPDAS 191

Query: 352  SKCIRVRLNTXXXXXXXXXXXXXNRD--DKPYDSRGSDNWPESLGKFLRFHLYKENKDTQ 525
            SKCIRVRLN+              ++  D P+DSRGS+NWPE LGKFLRFHLYKENKDTQ
Sbjct: 192  SKCIRVRLNSGGNNNSMGRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQ 251

Query: 526  EALGVIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCH 705
            EALG+I KMLGI PRSFGFAGTKDKRSVSTQRVTVFKQRAS+LAALN+RLIGI+LGDFC+
Sbjct: 252  EALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCY 311

Query: 706  VNEGLVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHL 885
            V EGL+LGQL GNRFTITLRGVV + ED+IK   N+L + GFINYFGLQRFGS SVPTHL
Sbjct: 312  VKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHL 371

Query: 886  IGATLVRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQ 1065
            +GATL+RGEWK+AV +ILDP+EGE+  I   REYYKET DI+GTLR+LPRHLVAE+AILQ
Sbjct: 372  VGATLLRGEWKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQ 431

Query: 1066 CLKKSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQ 1245
            CLKK PGNYLQALKAIPRTLRMMYVHSYQS+LWNHAAS R++K+G + VV+GDLV+C   
Sbjct: 432  CLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGD 491

Query: 1246 CTRKEIGTAYSECQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVDD 1425
             T KE+G    E +   SND  DS HLDE+ ETD PD     VK +T ED+++G Y +DD
Sbjct: 492  DTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAEDINSGKYTIDD 551

Query: 1426 VVLPLPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPKD 1605
            VVLPLPGSRVIYP ND+ E YH LA+KD I+L ES H++KEFSITSMTG YRRVFQKP D
Sbjct: 552  VVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMD 611

Query: 1606 YEWEMLTYRDGNVPLAETDFDVIVKSRSAGKVTEGD--LGNGKADQEHVIDYEEQSASFS 1779
            +EWE+LTY DGN PLAETD D I K + A  V E +   GN K D     D  +QS S S
Sbjct: 612  FEWELLTYIDGNKPLAETDLDKIAKDKLANIVKEEEAVCGNKKKDPS---DCMKQSESLS 668

Query: 1780 GGLKDSAKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLK 1959
              +K S ++NEA +      Q  +    G+D+Q  Q ALKL  TLP+SCYATMAIRELLK
Sbjct: 669  KDIKLSTENNEA-ACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 727

Query: 1960 TSTSVAFHKTLN 1995
            TSTSVAFHKTLN
Sbjct: 728  TSTSVAFHKTLN 739


>gb|EOY11114.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
          Length = 732

 Score =  862 bits (2226), Expect = 0.0
 Identities = 444/670 (66%), Positives = 510/670 (76%), Gaps = 5/670 (0%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELVEETEVKASDEPNKSYDAEIQTFRALAADSDA 180
            RYSDFIVNEVD EG VV LTSL+APPE V+E E K  D+ NK Y +EI  FR+LA D+DA
Sbjct: 70   RYSDFIVNEVDTEGNVVHLTSLDAPPEAVQEGETKTPDQLNKCYASEIIKFRSLAGDTDA 129

Query: 181  DMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITSKC 360
            D L+ FI++I SG E +I PIVLSP SDKSHRTA+HNFFKE L+FLVTDTVDGPD +SKC
Sbjct: 130  DRLEAFINQITSGSEEDICPIVLSPDSDKSHRTAMHNFFKENLRFLVTDTVDGPDSSSKC 189

Query: 361  IRVRLNTXXXXXXXXXXXXXNRDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEALGV 540
            IRVRLN+              R DKPYDSRGS +WPE LGKFLRFHLYKENKDTQEALG+
Sbjct: 190  IRVRLNSGNNNKGRNSKKRKERGDKPYDSRGSSHWPEHLGKFLRFHLYKENKDTQEALGL 249

Query: 541  IGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVNEGL 720
            IGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQ ASRLAALNERLIGIK+GDFC+V +  
Sbjct: 250  IGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQHASRLAALNERLIGIKVGDFCYVKDDF 309

Query: 721  VLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIGATL 900
            +LGQL GNRFTI LRG+VA+ E+ IK  V +L + GFINYFGLQRFGS S+PTH IGATL
Sbjct: 310  LLGQLLGNRFTIILRGIVADSEETIKASVESLGRHGFINYFGLQRFGSGSIPTHRIGATL 369

Query: 901  VRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQCLKKS 1080
            +RGEW+ A   ILDP+EGE++ +   REYYKETGDIEGTLRQLPRHLVAE+A+LQCLKK 
Sbjct: 370  LRGEWQAAASTILDPREGERDFVSKAREYYKETGDIEGTLRQLPRHLVAERAMLQCLKKC 429

Query: 1081 PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCTRKE 1260
            PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMR++KYG ++VVLGDLVYC      K 
Sbjct: 430  PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVEKYGSNEVVLGDLVYCKGNDAEK- 488

Query: 1261 IGTAYSECQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVDDVVLPL 1440
            +    SE +D    D  D   LDEIS TD+P+     VKA+T  D+  G Y ++DVVLP+
Sbjct: 489  VKVVPSEHEDNNFEDAYDCSQLDEISGTDLPEGKNNLVKAITAADISTGNYTIEDVVLPM 548

Query: 1441 PGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPKDYEWEM 1620
            PGSR+IYP NDI   YHD+AKKD ISL ES H+IKEFSITSMTG YRRVFQKP D+EWE+
Sbjct: 549  PGSRIIYPVNDIANVYHDMAKKDGISLTESVHNIKEFSITSMTGSYRRVFQKPIDFEWEL 608

Query: 1621 LTYRDGNVPLAETDFDVIVKSRSAG-----KVTEGDLGNGKADQEHVIDYEEQSASFSGG 1785
            L+Y DG++ L+ETD D I K++        K T+G  G   +D    I+  E    FS G
Sbjct: 609  LSYTDGSIALSETDLDKIAKTKPVNLVKEEKPTDGTEGQDSSDHMEHIESFEDDKKFSTG 668

Query: 1786 LKDSAKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLKTS 1965
              +     EAE     SL         S++  TQ+ALKL+FTLPASCYATMAIRELLKTS
Sbjct: 669  NVEVEGSREAEPPQIHSL-------PESNSLGTQKALKLAFTLPASCYATMAIRELLKTS 721

Query: 1966 TSVAFHKTLN 1995
            TSVAFHKTLN
Sbjct: 722  TSVAFHKTLN 731


>ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 2
            [Fragaria vesca subsp. vesca]
          Length = 693

 Score =  852 bits (2201), Expect = 0.0
 Identities = 434/671 (64%), Positives = 516/671 (76%), Gaps = 6/671 (0%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELVEETEVKASDEPNKSYDAEIQTFRALAADSDA 180
            RYSDF+VNEVD+EG VV LT+LEAPPE+V+E   K  D  +K Y AEI+ FR LA+  D 
Sbjct: 27   RYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAKTEDAASKDYSAEIEKFRCLASGEDV 86

Query: 181  DMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITSKC 360
            + L+ FI ++ SG E  + PIVLSP  DK HRTA+HNFFKE LKFLVTD VDGPD +SKC
Sbjct: 87   ERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAVHNFFKENLKFLVTDAVDGPDASSKC 146

Query: 361  IRVRLNTXXXXXXXXXXXXXN-RDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEALG 537
            IRVRLN+               R DKP+DSRG D+W E +GKFLRFHL+KENKDTQEALG
Sbjct: 147  IRVRLNSGGQNGRGRNSKKRKERGDKPFDSRGVDDWSEHVGKFLRFHLFKENKDTQEALG 206

Query: 538  VIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVNEG 717
            VIGKMLGIQPR+FGFAGTKDKR+V+ QRVTVFKQ ASRLAALN+RLIGIK+GDFC+V EG
Sbjct: 207  VIGKMLGIQPRAFGFAGTKDKRAVTCQRVTVFKQFASRLAALNDRLIGIKVGDFCYVKEG 266

Query: 718  LVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIGAT 897
            L LGQL GNRFTITLRGVVA+ EDII+   NAL K+GF+NYFGLQRFGS S+PTHLIGA+
Sbjct: 267  LSLGQLLGNRFTITLRGVVADSEDIIQASANALGKQGFVNYFGLQRFGSGSIPTHLIGAS 326

Query: 898  LVRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQCLKK 1077
            L+RGEWK+ V ++L+P+EGE++ I   R+YYKE+ DI+GTLR+LPR+LVAE+A+LQCLKK
Sbjct: 327  LLRGEWKSTVSMMLEPREGERDVITEARKYYKESNDIDGTLRKLPRYLVAERAVLQCLKK 386

Query: 1078 SPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCTRK 1257
             PGNY QALKA+PRTLRMMYVHSYQSYLWNHAASMR++KYG D+VV+GDLVYC    T K
Sbjct: 387  CPGNYSQALKAVPRTLRMMYVHSYQSYLWNHAASMRVQKYGTDRVVVGDLVYCKGHETEK 446

Query: 1258 EIGTAYSECQDGYSN-----DTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVD 1422
              G   SEC D   N     DT D +HLD+ISET+VP+  ++ VKA+T ED++ G Y +D
Sbjct: 447  VTGIVSSECVDENVNDENCDDTFDPNHLDDISETNVPEARVSLVKAVTAEDINNGTYTID 506

Query: 1423 DVVLPLPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPK 1602
            D+VLPLPGSRVI+P+NDI   +HDLAKKD ISL ES H++KEFSIT++TG YRRVFQKP 
Sbjct: 507  DIVLPLPGSRVIFPENDIAAVFHDLAKKDGISLTESVHNVKEFSITNVTGSYRRVFQKPV 566

Query: 1603 DYEWEMLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYEEQSASFSG 1782
            D+EW++L Y DGN+PL ETDF+ I K++      E   G       H  D  +QS     
Sbjct: 567  DFEWDILKYIDGNIPLVETDFEKIAKTKPVNVNKEYPTGVSGDGSLH--DRIKQSECSVN 624

Query: 1783 GLKDSAKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLKT 1962
             ++   KDNE ES+G     +E L   G   Q TQ ALKLSFTLPASCYATMAIRELLKT
Sbjct: 625  DVQLPKKDNEVESEGEKLPHVESL--GGPIPQGTQIALKLSFTLPASCYATMAIRELLKT 682

Query: 1963 STSVAFHKTLN 1995
            STSVAFHKTLN
Sbjct: 683  STSVAFHKTLN 693


>gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus notabilis]
          Length = 784

 Score =  844 bits (2180), Expect = 0.0
 Identities = 433/661 (65%), Positives = 506/661 (76%), Gaps = 3/661 (0%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELVEETEVKASDEPNKSYDAEIQTFRALAADSDA 180
            RYSDFIVNEVD +G VV LTSL+APPE  EET  +  D   KSY +EI++FR LA DSDA
Sbjct: 87   RYSDFIVNEVDTDGNVVHLTSLDAPPETREETRTETIDAGTKSYTSEIESFRCLAGDSDA 146

Query: 181  DMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITSKC 360
            + L+  I++I SG    + PIVLSPSSDKSHRT +HNFFK+  KFLVTDTVDGPD +SKC
Sbjct: 147  ESLEALINQINSGGGEEVSPIVLSPSSDKSHRTEIHNFFKKNFKFLVTDTVDGPDASSKC 206

Query: 361  IRVRLNTXXXXXXXXXXXXXN-RDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEALG 537
            IRVRLN+               R DKP+D RGSD+WPE +GKFLRFHLYKENKD+QEALG
Sbjct: 207  IRVRLNSGRHNNHGRNSKKRKERGDKPFDRRGSDDWPEHVGKFLRFHLYKENKDSQEALG 266

Query: 538  VIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVNEG 717
            +IGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALN+RLIGI++GDFC+V E 
Sbjct: 267  LIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNDRLIGIQVGDFCYVKEE 326

Query: 718  LVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIGAT 897
            LVLGQL GNRFT+TLRGVVA+ E+ IK   +AL ++GFINYFGLQRFGS SVPT+LIGA 
Sbjct: 327  LVLGQLSGNRFTVTLRGVVADSEETIKASASALGRRGFINYFGLQRFGSGSVPTYLIGAM 386

Query: 898  LVRGEWKTAVDLILDPKEGE--KEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQCL 1071
            L RGEWK AV +ILDP+EG+   + I   REYYKET DI+GTLRQLPRHLVAE AILQCL
Sbjct: 387  LFRGEWKDAVHMILDPREGDILLDVITKAREYYKETNDIDGTLRQLPRHLVAENAILQCL 446

Query: 1072 KKSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCT 1251
            KK PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAAS R++KYG DQVV+GDLV+C E   
Sbjct: 447  KKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASTRVQKYGTDQVVVGDLVFCKEHNI 506

Query: 1252 RKEIGTAYSECQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVDDVV 1431
             K  GTA ++C+D  SN    S  +DE+S  ++P+E    VK +  ED+ AG + +DDVV
Sbjct: 507  EKVKGTASADCKDEDSNAIFGSHDIDEVSGAELPEERNNPVKVVAAEDILAGNFAIDDVV 566

Query: 1432 LPLPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPKDYE 1611
            LPLPGSRVI P NDI + YHDLAKKD+ISL ESAH++KEFSITSMTG YRRVFQKP DYE
Sbjct: 567  LPLPGSRVILPTNDIAQVYHDLAKKDAISLTESAHNVKEFSITSMTGSYRRVFQKPVDYE 626

Query: 1612 WEMLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYEEQSASFSGGLK 1791
            WE+LTY +G +PLAETD D+I KS+ A    E ++   +   +     E ++        
Sbjct: 627  WELLTYTNGTIPLAETDLDIIAKSKPAHVAEENEVNGNEESTKRSKRVENEAVL------ 680

Query: 1792 DSAKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLKTSTS 1971
                DN+ + +    LQ E     G+++QE Q ALKLSFTLPASCYATMAIRELLKTSTS
Sbjct: 681  -QTDDNKVDGEREAELQAE--STCGTNSQEPQMALKLSFTLPASCYATMAIRELLKTSTS 737

Query: 1972 V 1974
            V
Sbjct: 738  V 738


>ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Populus trichocarpa]
            gi|550338143|gb|ERP60572.1| hypothetical protein
            POPTR_0005s05300g [Populus trichocarpa]
          Length = 752

 Score =  843 bits (2177), Expect = 0.0
 Identities = 437/679 (64%), Positives = 515/679 (75%), Gaps = 14/679 (2%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELVEETE---VKASDEP---NKSYDAEIQTFRAL 162
            RY+DFIVNEVD +G VV LT LE PP++VEET+    K SDE    +KSY+AEI+ FR+L
Sbjct: 79   RYADFIVNEVDTDGNVVHLTCLEPPPQMVEETKECGAKVSDEKMSESKSYEAEIELFRSL 138

Query: 163  AADSDADMLKTFIDKIGS--GIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVD 336
            A DSDA+ L++ I ++ S  G E ++  IVLSP SDK+HRTA+HNFFK+  KFLVTDT D
Sbjct: 139  AGDSDAEKLESLISQVDSCTGSEDSVPHIVLSPDSDKTHRTAVHNFFKQNFKFLVTDTTD 198

Query: 337  GPDITSKCIRVRLNTXXXXXXXXXXXXXN-RDDKPYDSRGSDNWPESLGKFLRFHLYKEN 513
            GPD +SKCIRVRL++               R +KP+DSRGS NWPE LGKFLRFHLYKEN
Sbjct: 199  GPDASSKCIRVRLDSGGHKNNGRNSKKRKERGEKPFDSRGSSNWPEHLGKFLRFHLYKEN 258

Query: 514  KDTQEALGVIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLG 693
            KDTQEALG+IGKMLGIQ +SFGFAGTKDKR+VSTQRVTVFKQ+ASRLAALN+RLIGIK+G
Sbjct: 259  KDTQEALGIIGKMLGIQSKSFGFAGTKDKRAVSTQRVTVFKQQASRLAALNDRLIGIKVG 318

Query: 694  DFCHVNEGLVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSV 873
            DFCHV EGL+LG+L GNRFT+TLRGV+A+ ED IK   ++L + GFINYFGLQRFG+ SV
Sbjct: 319  DFCHVKEGLLLGRLLGNRFTVTLRGVIADSEDTIKAAADSLGRHGFINYFGLQRFGTGSV 378

Query: 874  PTHLIGATLVRGEWKTAVDLILDPKEGE-----KEAIRGVREYYKETGDIEGTLRQLPRH 1038
            PTHLIGA L+RGEWKTAV +ILDP+EG+        IR  REYYKE+ DIEGTLRQLPRH
Sbjct: 379  PTHLIGAALLRGEWKTAVSMILDPREGDILLLFPYVIRKAREYYKESNDIEGTLRQLPRH 438

Query: 1039 LVAEKAILQCLKKSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVL 1218
            LVAE+A+LQCLKK PG+YLQA+KAIPRTLRMMYVH YQSYLWNHAAS R++KYG DQV+L
Sbjct: 439  LVAERAVLQCLKKCPGDYLQAMKAIPRTLRMMYVHGYQSYLWNHAASERVQKYGFDQVLL 498

Query: 1219 GDLVYCNEQCTRKEIGTAYSECQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDL 1398
            GDLVYC    + KE     SEC D   +DT D  HLDE S TD+ +   T VK +T ED+
Sbjct: 499  GDLVYCKGDDSEKETVGVNSECNDDNCDDTYDCSHLDETSGTDLLERKNTLVKVVTVEDM 558

Query: 1399 DAGMYKVDDVVLPLPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGY 1578
              G Y VDDVVLP+PGSRVI+P N+I + YHDLAKKD+I+L ES H +KEFSITSMTG Y
Sbjct: 559  STGNYTVDDVVLPMPGSRVIFPTNEIAKVYHDLAKKDAINLTESVHRVKEFSITSMTGSY 618

Query: 1579 RRVFQKPKDYEWEMLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYE 1758
            RRVFQKP D+EWE+LTY D N PLAETD D I K+ S   + + + G G  D + + D  
Sbjct: 619  RRVFQKPLDFEWELLTYNDSNKPLAETDLDKISKTGSTNIIKQEEQGKGDEDND-LSDCT 677

Query: 1759 EQSASFSGGLKDSAKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATM 1938
            +        +  S+  NE       S Q+     SGS+ QETQ ALKLS TLPASCYATM
Sbjct: 678  KLPVCSRNSIALSSDTNEESEREVESEQV-----SGSNWQETQMALKLSLTLPASCYATM 732

Query: 1939 AIRELLKTSTSVAFHKTLN 1995
            AIRELLKTSTSVA+HKTLN
Sbjct: 733  AIRELLKTSTSVAYHKTLN 751


>ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citrus clementina]
            gi|557535111|gb|ESR46229.1| hypothetical protein
            CICLE_v10003382mg [Citrus clementina]
          Length = 697

 Score =  842 bits (2174), Expect = 0.0
 Identities = 439/666 (65%), Positives = 515/666 (77%), Gaps = 7/666 (1%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPE--LVEETEVKASDEPNKSYDAEIQTFRALAADS 174
            RY DFIVNEVD + KVV LTSL+ PPE   VE  E KASD+ N+SY +EI++FR+LA DS
Sbjct: 28   RYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVEHNETKASDQLNRSYASEIESFRSLAGDS 87

Query: 175  DADMLKTFIDKIGSGI-EVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDIT 351
            DA  L+T I+++ SG  E +I PIVLS +SDKSHRTA+HNFFK+  KFLVTDTVDGPD +
Sbjct: 88   DAQCLETLINQVTSGKNEDSIPPIVLSANSDKSHRTAIHNFFKDNFKFLVTDTVDGPDAS 147

Query: 352  SKCIRVRLNTXXXXXXXXXXXXXNRD--DKPYDSRGSDNWPESLGKFLRFHLYKENKDTQ 525
            SKCIRVRLN+              ++  D P+DSRGS+NWPE LGKFLRFHLYKENKDTQ
Sbjct: 148  SKCIRVRLNSGGNNNSMGRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQ 207

Query: 526  EALGVIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCH 705
            EALG+I KMLGI PRSFGFAGTKDKRSVSTQRVTVFKQRAS+LAALN+RLIGI+LGDFC+
Sbjct: 208  EALGLISKMLGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCY 267

Query: 706  VNEGLVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHL 885
            V EGL+LGQL GNRFTITLRGVV + ED+IK   N+L + GFINYFGLQRFGS SVPTHL
Sbjct: 268  VKEGLLLGQLLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHL 327

Query: 886  IGATLVRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQ 1065
            +GATL+RGEWK+AV +ILDP+EG+    +  REYYKET DI+GTLR+LPRHLVAE+AILQ
Sbjct: 328  VGATLLRGEWKSAVKMILDPREGDILLFKA-REYYKETDDIDGTLRKLPRHLVAERAILQ 386

Query: 1066 CLKKSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQ 1245
            CLKK PGNYLQALKAIPRTLRMMYVHSYQS+LWNHAAS R++K+G + VV+GDLV+C   
Sbjct: 387  CLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGD 446

Query: 1246 CTRKEIGTAYSECQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVDD 1425
             T KE+G    E +   SND  DS HLDE+ ETD PD     VK +T ED+++G Y +DD
Sbjct: 447  DTEKELGCVNPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAEDINSGKYTIDD 506

Query: 1426 VVLPLPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPKD 1605
            VVLPLPGSRVIYP ND+ E YH LA+KD I+L ES H++KEFSITSMTG YRRVFQKP D
Sbjct: 507  VVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMD 566

Query: 1606 YEWEMLTYRDGNVPLAETDFDVIVKSRSAGKVTEGD--LGNGKADQEHVIDYEEQSASFS 1779
            +EWE+LTY DGN PLAETD D I K + A  V E +   GN K D     D  +QS S S
Sbjct: 567  FEWELLTYIDGNKPLAETDLDKIAKDKLANIVKEEEAVCGNKKKDPS---DCMKQSESLS 623

Query: 1780 GGLKDSAKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLK 1959
              +K S ++NEA +      Q  +    G+D+Q  Q ALKL  TLP+SCYATMAIRELLK
Sbjct: 624  KDIKLSTENNEA-ACAKEVKQPHVESVCGADSQGKQMALKLGLTLPSSCYATMAIRELLK 682

Query: 1960 TSTSVA 1977
            TSTSV+
Sbjct: 683  TSTSVS 688


>gb|EOY11113.1| Pseudouridine synthase family protein, putative isoform 1 [Theobroma
            cacao]
          Length = 763

 Score =  838 bits (2166), Expect = 0.0
 Identities = 443/701 (63%), Positives = 511/701 (72%), Gaps = 36/701 (5%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPEL-------------VEETEVKASDEPNKSYDAE 141
            RYSDFIVNEVD EG VV LTSL+APPE+             V+E E K  D+ NK Y +E
Sbjct: 70   RYSDFIVNEVDTEGNVVHLTSLDAPPEVMIDVFSLNKFTQAVQEGETKTPDQLNKCYASE 129

Query: 142  IQTFRALAADSDADMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLV 321
            I  FR+LA D+DAD L+ FI++I SG E +I PIVLSP SDKSHRTA+HNFFKE L+FLV
Sbjct: 130  IIKFRSLAGDTDADRLEAFINQITSGSEEDICPIVLSPDSDKSHRTAMHNFFKENLRFLV 189

Query: 322  TDTVDGPDITSKCIRVRLNTXXXXXXXXXXXXXNRDDKPYDSRGSDNWPESLGKFLRFHL 501
            TDTVDGPD +SKCIRVRLN+              R DKPYDSRGS +WPE LGKFLRFHL
Sbjct: 190  TDTVDGPDSSSKCIRVRLNSGNNNKGRNSKKRKERGDKPYDSRGSSHWPEHLGKFLRFHL 249

Query: 502  YKENKDTQEALGVIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIG 681
            YKENKDTQEALG+IGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQ ASRLAALNERLIG
Sbjct: 250  YKENKDTQEALGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQHASRLAALNERLIG 309

Query: 682  IKLGDFCHVNEGLVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFG 861
            IK+GDFC+V +  +LGQL GNRFTI LRG+VA+ E+ IK  V +L + GFINYFGLQRFG
Sbjct: 310  IKVGDFCYVKDDFLLGQLLGNRFTIILRGIVADSEETIKASVESLGRHGFINYFGLQRFG 369

Query: 862  SSSVPTHLIGATLVRGEWKTAVDLILDPKEGEKEAI------------------RGVREY 987
            S S+PTH IGATL+RGEW+ A   ILDP+EG+  ++                  +  REY
Sbjct: 370  SGSIPTHRIGATLLRGEWQAAASTILDPREGDILSLTFFFPFLLGKALFRCLTTQRAREY 429

Query: 988  YKETGDIEGTLRQLPRHLVAEKAILQCLKKSPGNYLQALKAIPRTLRMMYVHSYQSYLWN 1167
            YKETGDIEGTLRQLPRHLVAE+A+LQCLKK PGNYLQALKAIPRTLRMMYVHSYQSYLWN
Sbjct: 430  YKETGDIEGTLRQLPRHLVAERAMLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWN 489

Query: 1168 HAASMRIKKYGVDQVVLGDLVYCNEQCTRKEIGTAYSECQDGYSNDTQDSDHLDEISETD 1347
            HAASMR++KYG ++VVLGDLVYC      K +    SE +D    D  D   LDEIS TD
Sbjct: 490  HAASMRVEKYGSNEVVLGDLVYCKGNDAEK-VKVVPSEHEDNNFEDAYDCSQLDEISGTD 548

Query: 1348 VPDETITSVKALTEEDLDAGMYKVDDVVLPLPGSRVIYPKNDIEEAYHDLAKKDSISLLE 1527
            +P+     VKA+T  D+  G Y ++DVVLP+PGSR+IYP NDI   YHD+AKKD ISL E
Sbjct: 549  LPEGKNNLVKAITAADISTGNYTIEDVVLPMPGSRIIYPVNDIANVYHDMAKKDGISLTE 608

Query: 1528 SAHSIKEFSITSMTGGYRRVFQKPKDYEWEMLTYRDGNVPLAETDFDVIVKSRSAG---- 1695
            S H+IKEFSITSMTG YRRVFQKP D+EWE+L+Y DG++ L+ETD D I K++       
Sbjct: 609  SVHNIKEFSITSMTGSYRRVFQKPIDFEWELLSYTDGSIALSETDLDKIAKTKPVNLVKE 668

Query: 1696 -KVTEGDLGNGKADQEHVIDYEEQSASFSGGLKDSAKDNEAESDGTGSLQIELLDGSGSD 1872
             K T+G  G   +D    I+  E    FS G  +     EAE     SL         S+
Sbjct: 669  EKPTDGTEGQDSSDHMEHIESFEDDKKFSTGNVEVEGSREAEPPQIHSL-------PESN 721

Query: 1873 TQETQRALKLSFTLPASCYATMAIRELLKTSTSVAFHKTLN 1995
            +  TQ+ALKL+FTLPASCYATMAIRELLKTSTSVAFHKTLN
Sbjct: 722  SLGTQKALKLAFTLPASCYATMAIRELLKTSTSVAFHKTLN 762


>ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 1
            [Fragaria vesca subsp. vesca]
          Length = 701

 Score =  837 bits (2163), Expect = 0.0
 Identities = 427/664 (64%), Positives = 509/664 (76%), Gaps = 6/664 (0%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELVEETEVKASDEPNKSYDAEIQTFRALAADSDA 180
            RYSDF+VNEVD+EG VV LT+LEAPPE+V+E   K  D  +K Y AEI+ FR LA+  D 
Sbjct: 27   RYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAKTEDAASKDYSAEIEKFRCLASGEDV 86

Query: 181  DMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITSKC 360
            + L+ FI ++ SG E  + PIVLSP  DK HRTA+HNFFKE LKFLVTD VDGPD +SKC
Sbjct: 87   ERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAVHNFFKENLKFLVTDAVDGPDASSKC 146

Query: 361  IRVRLNTXXXXXXXXXXXXXN-RDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEALG 537
            IRVRLN+               R DKP+DSRG D+W E +GKFLRFHL+KENKDTQEALG
Sbjct: 147  IRVRLNSGGQNGRGRNSKKRKERGDKPFDSRGVDDWSEHVGKFLRFHLFKENKDTQEALG 206

Query: 538  VIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVNEG 717
            VIGKMLGIQPR+FGFAGTKDKR+V+ QRVTVFKQ ASRLAALN+RLIGIK+GDFC+V EG
Sbjct: 207  VIGKMLGIQPRAFGFAGTKDKRAVTCQRVTVFKQFASRLAALNDRLIGIKVGDFCYVKEG 266

Query: 718  LVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIGAT 897
            L LGQL GNRFTITLRGVVA+ EDII+   NAL K+GF+NYFGLQRFGS S+PTHLIGA+
Sbjct: 267  LSLGQLLGNRFTITLRGVVADSEDIIQASANALGKQGFVNYFGLQRFGSGSIPTHLIGAS 326

Query: 898  LVRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQCLKK 1077
            L+RGEWK+ V ++L+P+EGE++ I   R+YYKE+ DI+GTLR+LPR+LVAE+A+LQCLKK
Sbjct: 327  LLRGEWKSTVSMMLEPREGERDVITEARKYYKESNDIDGTLRKLPRYLVAERAVLQCLKK 386

Query: 1078 SPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCTRK 1257
             PGNY QALKA+PRTLRMMYVHSYQSYLWNHAASMR++KYG D+VV+GDLVYC    T K
Sbjct: 387  CPGNYSQALKAVPRTLRMMYVHSYQSYLWNHAASMRVQKYGTDRVVVGDLVYCKGHETEK 446

Query: 1258 EIGTAYSECQDGYSN-----DTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVD 1422
              G   SEC D   N     DT D +HLD+ISET+VP+  ++ VKA+T ED++ G Y +D
Sbjct: 447  VTGIVSSECVDENVNDENCDDTFDPNHLDDISETNVPEARVSLVKAVTAEDINNGTYTID 506

Query: 1423 DVVLPLPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPK 1602
            D+VLPLPGSRVI+P+NDI   +HDLAKKD ISL ES H++KEFSIT++TG YRRVFQKP 
Sbjct: 507  DIVLPLPGSRVIFPENDIAAVFHDLAKKDGISLTESVHNVKEFSITNVTGSYRRVFQKPV 566

Query: 1603 DYEWEMLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYEEQSASFSG 1782
            D+EW++L Y DGN+PL ETDF+ I K++      E   G       H  D  +QS     
Sbjct: 567  DFEWDILKYIDGNIPLVETDFEKIAKTKPVNVNKEYPTGVSGDGSLH--DRIKQSECSVN 624

Query: 1783 GLKDSAKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLKT 1962
             ++   KDNE ES+G     +E L   G   Q TQ ALKLSFTLPASCYATMAIRELLKT
Sbjct: 625  DVQLPKKDNEVESEGEKLPHVESL--GGPIPQGTQIALKLSFTLPASCYATMAIRELLKT 682

Query: 1963 STSV 1974
            STSV
Sbjct: 683  STSV 686


>gb|EMJ09385.1| hypothetical protein PRUPE_ppa020985mg [Prunus persica]
          Length = 691

 Score =  835 bits (2158), Expect = 0.0
 Identities = 437/661 (66%), Positives = 506/661 (76%), Gaps = 3/661 (0%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELVEETEVKASDEPNKSYDAEIQTFRALAADSDA 180
            RYSDF+VNEVD E  VV LT+L+AP E V+E E K  D  +K Y  EI++FR+L    DA
Sbjct: 28   RYSDFMVNEVDTEENVVHLTNLDAPAETVKEIETKTHDATSKDYTTEIESFRSLVDPDDA 87

Query: 181  DMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITSKC 360
            + L+  I++I SG E +I PIVLSP  DKSHRTA+HNFFKE  KFLVTDTVDGPD +SKC
Sbjct: 88   ERLEAIINQINSGSEDSILPIVLSPDYDKSHRTAVHNFFKENFKFLVTDTVDGPDASSKC 147

Query: 361  IRVRLNTXXXXXXXXXXXXXN-RDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEALG 537
            IRVR+N+               R DKP+DSRGSD+W E++GKFLRFHLYKENKDTQEALG
Sbjct: 148  IRVRINSGGQNSRGRNSRKRKERGDKPFDSRGSDDWSENVGKFLRFHLYKENKDTQEALG 207

Query: 538  VIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVNEG 717
            +I KMLGIQPRSFGFAGTKDKR+V+TQRVTVFKQ ASRLAALN+RLIGIK+GDFC+V EG
Sbjct: 208  IIAKMLGIQPRSFGFAGTKDKRAVTTQRVTVFKQLASRLAALNDRLIGIKVGDFCYVKEG 267

Query: 718  LVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIGAT 897
            LVLGQL GNRFTITLRGVVA+ ED IK  V AL K+GFINYFGLQRFGS SVPTHLIGAT
Sbjct: 268  LVLGQLLGNRFTITLRGVVADSEDTIKASVIALGKQGFINYFGLQRFGSGSVPTHLIGAT 327

Query: 898  LVRGEWKTAVDLILDPKEGE-KEAIRGV-REYYKETGDIEGTLRQLPRHLVAEKAILQCL 1071
            L+RGEWK+ V L LDP+EG+    + G+ REYYKET DIEGTLRQLPRHLV+EKAILQCL
Sbjct: 328  LLRGEWKSTVSLFLDPREGDILLMLLGIAREYYKETNDIEGTLRQLPRHLVSEKAILQCL 387

Query: 1072 KKSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCT 1251
            KK PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMR++KYG D+VVLGDLVYC    T
Sbjct: 388  KKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGTDRVVLGDLVYCKGNET 447

Query: 1252 RKEIGTAYSECQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVDDVV 1431
             K      S+C D   NDT D   LD+IS T++P+E +  VKA+T ED+ +G Y +DDVV
Sbjct: 448  EKVSEVVSSKCVDENGNDTLDPIDLDDISGTNLPEERLNLVKAVTAEDILSGNYTIDDVV 507

Query: 1432 LPLPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPKDYE 1611
            LP+PGSRVI+P+NDI   +HDLAKKD+ISL ES H++KEFSITSMTG YRRVFQKP D+E
Sbjct: 508  LPMPGSRVIFPENDIAHVFHDLAKKDAISLTESVHNVKEFSITSMTGSYRRVFQKPMDFE 567

Query: 1612 WEMLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYEEQSASFSGGLK 1791
            WE+L Y DGN PL +TDFD I K++ +    +G L           D  +QS      + 
Sbjct: 568  WEILKYIDGNKPLVDTDFDKIAKTKPSSLNEDGRLH----------DKTKQSECLDNDIG 617

Query: 1792 DSAKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLKTSTS 1971
                DN A++ G    Q E L    ++ QETQ ALKLSFTLPASCYATMAIRELLKTSTS
Sbjct: 618  LQTDDNGAKAKGEELPQAESL--CDTNPQETQTALKLSFTLPASCYATMAIRELLKTSTS 675

Query: 1972 V 1974
            V
Sbjct: 676  V 676


>ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ricinus communis]
            gi|223548191|gb|EEF49682.1| tRNA pseudouridine synthase
            d, putative [Ricinus communis]
          Length = 753

 Score =  828 bits (2138), Expect = 0.0
 Identities = 437/681 (64%), Positives = 512/681 (75%), Gaps = 16/681 (2%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELVE---ETEVKASDEPNKSYDAEIQTFRALAAD 171
            RYSDFIVNEVD  G VV LTSL  P E+VE   E E + +++  K+Y AEI++FR LA D
Sbjct: 76   RYSDFIVNEVDNNGNVVHLTSLHVPREIVEVAEEREEEITNQVGKNYAAEIESFRELAGD 135

Query: 172  SDADMLKTFIDKIGSGIE-VNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDI 348
            +D   L+ FI+++ S    +NI PI+LSP SDK+HRTA HNFFKEKLKFLVTDTVDGPD 
Sbjct: 136  ADTQRLEAFINQVISEDNCINISPILLSPDSDKAHRTATHNFFKEKLKFLVTDTVDGPDA 195

Query: 349  TSKCIRVRLNTXXXXXXXXXXXXXNRD--DKPYDSRGSDNWPESLGKFLRFHLYKENKDT 522
            +SKCIRVRLN+              +D  DKP+DSRGSD+WPE LGKFLRFHLYKENKDT
Sbjct: 196  SSKCIRVRLNSRGNINEGNRNSKKRKDRNDKPFDSRGSDHWPEHLGKFLRFHLYKENKDT 255

Query: 523  QEALGVIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFC 702
            QEA+G+IGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQ ASRLAALN+RLIGIK+GDFC
Sbjct: 256  QEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQHASRLAALNDRLIGIKVGDFC 315

Query: 703  HVNEGLVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTH 882
            +VNEGL+LGQL GNRFT+TLRGVVA+ ED IK   ++L + GFINYFGLQRFGS SVPTH
Sbjct: 316  YVNEGLLLGQLLGNRFTVTLRGVVADSEDTIKGSADSLGRHGFINYFGLQRFGSGSVPTH 375

Query: 883  LIGATLVRGEWKTAVDLILDPKEGEKEAI-------RGVREYYKETGDIEGTLRQLPRHL 1041
            LIGA L+RGEWK AV +ILDP+EG+   +       R  REYYKE+ DI+GTLRQLPR+L
Sbjct: 376  LIGAALLRGEWKYAVSMILDPREGDILLLVICFMWMRMAREYYKESDDIDGTLRQLPRYL 435

Query: 1042 VAEKAILQCLKKSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLG 1221
             AE+A+LQCLKK PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMR++KYG DQVV+G
Sbjct: 436  TAERAVLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGTDQVVVG 495

Query: 1222 DLVYCNEQCTRKEIGTAYSECQDGYSNDTQDSDHLDEISETDVPDETITSVK---ALTEE 1392
            DLVYC    T +EIG+A S C+D    D     +LDE S TD+ +   T VK   A+  E
Sbjct: 496  DLVYCKGDDTEREIGSANSACEDDDCEDMYGCSNLDETSGTDLSERKDTLVKVEQAVNAE 555

Query: 1393 DLDAGMYKVDDVVLPLPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTG 1572
            DL  G Y ++DV+LP+PGSRV YP NDI + YHDLA+KD+I+L ES HS KEFSITSMTG
Sbjct: 556  DLSTGNYTINDVILPMPGSRVSYPTNDIAKVYHDLAEKDAINLAESVHSAKEFSITSMTG 615

Query: 1573 GYRRVFQKPKDYEWEMLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVID 1752
             YRRVFQKP D+EWE+L+Y DG  PLAETD + + K++S     E +    K D +   D
Sbjct: 616  SYRRVFQKPMDFEWEILSYTDGTTPLAETDMEKLAKAKSIELNKEEE--TKKNDTKSPSD 673

Query: 1753 YEEQSASFSGGLKDSAKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYA 1932
               Q  S    L  SA+ N          ++E L   G +T+  Q ALKL+FTLPASCYA
Sbjct: 674  CMRQPMSSGNDLHLSAEYNREGEREVEVAKVEPL--YGPNTRGAQTALKLTFTLPASCYA 731

Query: 1933 TMAIRELLKTSTSVAFHKTLN 1995
            TMAIRELLKTSTSVAFHKTLN
Sbjct: 732  TMAIRELLKTSTSVAFHKTLN 752


>ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana]
            gi|52354299|gb|AAU44470.1| hypothetical protein AT3G04820
            [Arabidopsis thaliana] gi|61742699|gb|AAX55170.1|
            hypothetical protein At3g04820 [Arabidopsis thaliana]
            gi|332640619|gb|AEE74140.1| pseudouridine synthase
            [Arabidopsis thaliana]
          Length = 715

 Score =  809 bits (2089), Expect = 0.0
 Identities = 412/668 (61%), Positives = 504/668 (75%), Gaps = 3/668 (0%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELV--EETEVKASDEPNKSYDAEIQTFRALAADS 174
            RY+DFIVNEVD++G VV LTSL+ PPE+   EE + K+ D   ++Y + +++F+++++ +
Sbjct: 64   RYADFIVNEVDMDGNVVHLTSLDLPPEMAVKEEDKAKSCDNVPQNYTSAVESFKSISSVT 123

Query: 175  DADMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITS 354
            DA+ L+  I+++ SG +  + P+VL PSSDKS RTA+HNF KE  KFLVTDTVDGPD TS
Sbjct: 124  DAERLEILINQVTSGTDGEVLPVVLDPSSDKSKRTAIHNFVKENFKFLVTDTVDGPDSTS 183

Query: 355  KCIRVRLNTXXXXXXXXXXXXXN-RDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEA 531
            KCIRVR+N+               R DKP+DSRGS++WPE +GKFLRFHLYKENKDTQEA
Sbjct: 184  KCIRVRVNSGANNNRGNRSKKRKERGDKPFDSRGSEHWPEHVGKFLRFHLYKENKDTQEA 243

Query: 532  LGVIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVN 711
            LG+IGKMLG+QP+SFGF+GTKDKRSVSTQRVTVFKQ+AS+LAALN+RL GIK+GDFC+V 
Sbjct: 244  LGLIGKMLGVQPKSFGFSGTKDKRSVSTQRVTVFKQQASKLAALNKRLFGIKVGDFCNVK 303

Query: 712  EGLVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIG 891
            EGL+LGQL GNRFTITLRGVVA+ E+ IK+   +L K GFINYFGLQRFGS SVPTH +G
Sbjct: 304  EGLLLGQLMGNRFTITLRGVVADSEETIKQSAESLGKDGFINYFGLQRFGSGSVPTHHVG 363

Query: 892  ATLVRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQCL 1071
            A L++GEWK AVD+ILDP+E E+  +   REYYKETGDI+GTLRQLPR+LVAE+AILQCL
Sbjct: 364  AALLKGEWKDAVDMILDPRETERHVVNDAREYYKETGDIDGTLRQLPRYLVAERAILQCL 423

Query: 1072 KKSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCT 1251
            KK PGNYLQALK IPRTLRMMYVHSYQSYLWN+AAS+R+K YG  QVVLGDLV       
Sbjct: 424  KKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNNAASLRVKNYGTSQVVLGDLVSTKVDAA 483

Query: 1252 RKEIGTAYSECQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVDDVV 1431
            ++ + +  SE  +  S +  D D +D+ +  D+P E    VK ++ EDL+AG Y   D+V
Sbjct: 484  KRMVDSLTSEHNES-SEEALDCDQVDDTAVVDLPAERSDLVKVVSIEDLEAGTYSTSDIV 542

Query: 1432 LPLPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPKDYE 1611
            LPLPGSRVIYP NDI E YHDLAKKD ISL ES H +KEFSITSMTGGYRRVFQKP D+E
Sbjct: 543  LPLPGSRVIYPSNDIAEIYHDLAKKDGISLTESIHGVKEFSITSMTGGYRRVFQKPIDFE 602

Query: 1612 WEMLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYEEQSASFSGGLK 1791
            WE+LTY D N PLAETD D I  ++   KV   +    + + E +        S    LK
Sbjct: 603  WELLTYTDSNKPLAETDLDRIPMNKPVEKVGSTE----EIEDESMKSDTNPHDSGETNLK 658

Query: 1792 DSAKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLKTSTS 1971
            D    NEAE D TG+           D+++TQ ALK++ TLP+SCYATMAIRELLKTSTS
Sbjct: 659  DQTDSNEAEKD-TGN----------PDSEQTQMALKMALTLPSSCYATMAIRELLKTSTS 707

Query: 1972 VAFHKTLN 1995
            VA+HKTLN
Sbjct: 708  VAYHKTLN 715


>ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C1A4.09-like [Cucumis
            sativus]
          Length = 719

 Score =  806 bits (2083), Expect = 0.0
 Identities = 418/669 (62%), Positives = 511/669 (76%), Gaps = 4/669 (0%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPE-LVEETEVKASDEPNKSYDAEIQTFRALAADSD 177
            RYSDFIVNEVD +G VV LTSL+APPE +V E+        ++SY +EI+ FR+LA DSD
Sbjct: 67   RYSDFIVNEVDTDGNVVHLTSLDAPPEVIVSESGPTIVHSTSQSYASEIELFRSLAGDSD 126

Query: 178  ADMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITSK 357
            A++L+ F+ +I SG+  +I PIV SP +DK+HRTA+HNFFK K KFLVTDT+DGPD +SK
Sbjct: 127  AEILEIFLKQINSGVNDDILPIVFSPDTDKTHRTAVHNFFK-KFKFLVTDTIDGPDSSSK 185

Query: 358  CIRVRLNTXXXXXXXXXXXXXN-RDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEAL 534
            C+RVR+++               R DKP+DSRGSDNWPE +GKFLRFHLYKENKDTQEAL
Sbjct: 186  CVRVRVDSGAQNNRGRFSKKRKERGDKPFDSRGSDNWPEHVGKFLRFHLYKENKDTQEAL 245

Query: 535  GVIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVNE 714
            G+IGKMLGIQ RSFGFAGTKDKRS+STQRVTVFKQ ASR+AALN+RLIGIKLG+F ++ E
Sbjct: 246  GLIGKMLGIQTRSFGFAGTKDKRSISTQRVTVFKQHASRIAALNDRLIGIKLGNFSYIQE 305

Query: 715  GLVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIGA 894
            GL+LGQL GNRFTITLRGVVA  ED+IK    AL + GFINYFGLQRFGS SVPTHL+GA
Sbjct: 306  GLLLGQLLGNRFTITLRGVVANSEDVIKASAEALGRHGFINYFGLQRFGSGSVPTHLVGA 365

Query: 895  TLVRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQCLK 1074
            +L+RGEWK AV++ILDP+EG+   +   R+YYKE+ DI+GTL+QLPR+LVAE+AILQCLK
Sbjct: 366  SLLRGEWKGAVNMILDPREGDILLLMRARDYYKESDDIDGTLKQLPRYLVAERAILQCLK 425

Query: 1075 KSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCTR 1254
            K PGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMR++KYG+D+VV+GDLVYC E  T 
Sbjct: 426  KCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTE 485

Query: 1255 KEIGTAYSECQDGYSND--TQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVDDV 1428
                    E +D    D  + DS HL+E+ +  +P E    VKA+T  D+ +G + +DDV
Sbjct: 486  TAAVQNSEEYEDEDCGDANSYDSCHLEEVCKLGLPTERHKLVKAVTAGDVLSGNFTIDDV 545

Query: 1429 VLPLPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPKDY 1608
            VLPLPGSRV+YP NDI E Y+DLA KDSISL  S H++KEFSITSMTG YRRVFQ+PKDY
Sbjct: 546  VLPLPGSRVLYPTNDIAEVYNDLATKDSISLTNSVHNVKEFSITSMTGSYRRVFQRPKDY 605

Query: 1609 EWEMLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYEEQSASFSGGL 1788
            EWE+++Y D N+PLA++D   ++KS+S  ++++ +    K+  E  +D  +QS      +
Sbjct: 606  EWELISYVDRNLPLAQSDLHNLLKSQSV-EISKEEKIADKSKNEDSLDSTDQSVCCKKNI 664

Query: 1789 KDSAKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLKTST 1968
            +  A   E E              +G  TQ+ Q ALKLSFTLPAS YATMAIRELLKTST
Sbjct: 665  QLEAGGKENE--------------NGQGTQDPQMALKLSFTLPASSYATMAIRELLKTST 710

Query: 1969 SVAFHKTLN 1995
            SVAFHKTLN
Sbjct: 711  SVAFHKTLN 719


>ref|XP_006577278.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Glycine max]
          Length = 690

 Score =  793 bits (2047), Expect = 0.0
 Identities = 416/672 (61%), Positives = 506/672 (75%), Gaps = 7/672 (1%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELVEETEVKASDEPNK--SYDAEIQTFRALAADS 174
            RYSDFIVNEVD +G VV+L+SL+AP E  E ++   ++  +   SY ++I++F++LA DS
Sbjct: 30   RYSDFIVNEVDRDGTVVQLSSLDAPQEEPESSQENGTNTSDNVVSYASQIESFKSLAGDS 89

Query: 175  DADMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITS 354
            DA +L+ FI+KI +G E  + PIVLSP SDKSHR A+HNFFKE  KFLVTD VDGPD +S
Sbjct: 90   DAVLLEEFINKINAGGEDGVSPIVLSPDSDKSHRKAMHNFFKENFKFLVTDVVDGPDASS 149

Query: 355  KCIRVRLNTXXXXXXXXXXXXXN-RDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEA 531
            KCIRVRLN+               R DKP+DSRGS+NWP+++GKFLRFHLYKENKDT EA
Sbjct: 150  KCIRVRLNSAEPNNKGKNSKKRKERGDKPFDSRGSENWPKNVGKFLRFHLYKENKDTHEA 209

Query: 532  LGVIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVN 711
            LGVIG ML +QP+SFGFAGTKDKR+V+TQRVTV+KQRASRLA+LN+RL GIKLGDFC+V 
Sbjct: 210  LGVIGNMLSVQPKSFGFAGTKDKRAVTTQRVTVYKQRASRLASLNKRLFGIKLGDFCYVK 269

Query: 712  EGLVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIG 891
            EGL LGQL GNRFTITLRG+VA+ EDIIK   +AL + GFINYFGLQRFGS S+PTHLIG
Sbjct: 270  EGLCLGQLLGNRFTITLRGIVADSEDIIKASADALGRHGFINYFGLQRFGSGSLPTHLIG 329

Query: 892  ATLVRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQCL 1071
            A L++GEWK AVD+ILDP++GEK AI   R+YYKE+ D+ GTL+QLPR+LVAE+A+LQ L
Sbjct: 330  AALLQGEWKLAVDMILDPRDGEKSAIAKARKYYKESSDVVGTLKQLPRYLVAERAVLQTL 389

Query: 1072 KKSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCT 1251
            K SPGNYLQALK+IPRTLRM+YVHSYQSYLWNHAAS R++KYG + VVLGDLVYC E  T
Sbjct: 390  KTSPGNYLQALKSIPRTLRMLYVHSYQSYLWNHAASKRVQKYGTENVVLGDLVYCKENST 449

Query: 1252 RK---EIGTAYSE-CQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKV 1419
             K    +G+ Y+E C   Y     DS++ DEIS      E I SVK +  EDL++G Y +
Sbjct: 450  GKVTESVGSEYAEDCSGRY-----DSNNEDEIS--GEIHEEIDSVKVVDVEDLNSGYYTI 502

Query: 1420 DDVVLPLPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKP 1599
            DDV+LP+PGSR+ YP N I   Y DLAKKD ISL ES H++++FSITS+TG YRRVFQKP
Sbjct: 503  DDVILPMPGSRIKYPTNHIANVYEDLAKKDGISLTESVHNVEDFSITSITGCYRRVFQKP 562

Query: 1600 KDYEWEMLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYEEQSASFS 1779
             ++EWE+LTY D N  L ETD D + KS+  G V +    NGK   E   D   +  S +
Sbjct: 563  INFEWELLTYSDSNKQLVETDLDKVNKSKPMGTVKQMGAANGK--NEEAFDCIRELESSN 620

Query: 1780 GGLKDSAKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLK 1959
              +K    +N +E  G           SGS +Q++Q ALKLSFTLPASCYATMAIRELLK
Sbjct: 621  DVVK---VENYSEIAGEEIKLPHDESLSGSSSQDSQIALKLSFTLPASCYATMAIRELLK 677

Query: 1960 TSTSVAFHKTLN 1995
            TSTSVA+HKTLN
Sbjct: 678  TSTSVAYHKTLN 689


>gb|ESW19147.1| hypothetical protein PHAVU_006G100200g [Phaseolus vulgaris]
          Length = 691

 Score =  788 bits (2035), Expect = 0.0
 Identities = 412/675 (61%), Positives = 504/675 (74%), Gaps = 10/675 (1%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELVEETEVKASDEPNK--SYDAEIQTFRALAADS 174
            RYSDFIVNEVD +G VV+L+SL+AP E +E  +   ++  +   SY + I+ F+ LA + 
Sbjct: 30   RYSDFIVNEVDRDGAVVQLSSLDAPEEELESVQENGTNTSDTVVSYASRIEAFKILAGEP 89

Query: 175  DADMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITS 354
            DA +L+ F++KI +G EV++ PIVLSP SDKSHR A+HNFFKE  KFLVTD VDGPD + 
Sbjct: 90   DAILLEEFVNKINAGGEVSVSPIVLSPDSDKSHRKAVHNFFKENFKFLVTDVVDGPDASL 149

Query: 355  KCIRVRLNTXXXXXXXXXXXXXN-RDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEA 531
            KCIRVRLN+               R DKP+DSRGS+NWPE++GKFLRFH+YKENKDT EA
Sbjct: 150  KCIRVRLNSAEPNNKGKNSKKRKERGDKPFDSRGSENWPENVGKFLRFHIYKENKDTHEA 209

Query: 532  LGVIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVN 711
            LGVIG MLGIQP+SFGFAGTKDKR+V+TQRVTV+KQRASRLA+LN+RL GIKLGDFC+V 
Sbjct: 210  LGVIGNMLGIQPKSFGFAGTKDKRAVTTQRVTVYKQRASRLASLNKRLFGIKLGDFCYVK 269

Query: 712  EGLVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIG 891
            EGL LGQL GNRFTITLRG+V++ EDIIK   +AL + GFINYFGLQRFGS S+PTHLIG
Sbjct: 270  EGLCLGQLMGNRFTITLRGIVSDSEDIIKASADALGRLGFINYFGLQRFGSGSLPTHLIG 329

Query: 892  ATLVRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQCL 1071
            A L+RGEWK AVD+ILDP+EGE+ AI   R+YYKE  D+ GTL+QLPR+LVAE+A+LQ L
Sbjct: 330  AALLRGEWKLAVDMILDPREGERSAIAKARKYYKENNDVVGTLKQLPRYLVAERAVLQSL 389

Query: 1072 KKSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCT 1251
            K SPGNYLQALK+IPRTLR++Y+HSYQSYLWNHAAS R++KYG +QVVLGDLV C E  T
Sbjct: 390  KTSPGNYLQALKSIPRTLRLLYIHSYQSYLWNHAASKRVQKYGTEQVVLGDLVNCKENST 449

Query: 1252 RK---EIGTAYSE-CQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKV 1419
             K    +G+ Y E C  GY     DS + +EIS  D+ ++  + VK +  EDL++G Y +
Sbjct: 450  AKITEFVGSEYPEDCSGGY-----DSSNQNEIS-VDIHEDINSCVKVVDAEDLNSGCYTI 503

Query: 1420 DDVVLPLPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKP 1599
            DDV+LP+PGSRV YP N I   Y DLAKKD ISL ES H+++EFSITS+TG YRRVFQKP
Sbjct: 504  DDVILPMPGSRVKYPTNHIANVYEDLAKKDGISLTESVHNVEEFSITSITGCYRRVFQKP 563

Query: 1600 KDYEWEMLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYEEQSASFS 1779
             ++EWE+LTY D N  L ETD + I KS     V   D+GNGK ++      E +S+   
Sbjct: 564  INFEWELLTYSDSNKQLVETDLEKINKSAPTNTVKPIDVGNGKTEEAFDCIREFESS--- 620

Query: 1780 GGLKDSAKDNEAESDGTGSLQIELLDGSG---SDTQETQRALKLSFTLPASCYATMAIRE 1950
                D     E   D  G  +++L  G     S +Q++  ALKLSFTLPASCYATMAIRE
Sbjct: 621  ----DDFPKVENFKDIAGE-EVKLPHGESLCDSSSQDSHTALKLSFTLPASCYATMAIRE 675

Query: 1951 LLKTSTSVAFHKTLN 1995
            LLKTSTSVA+HKTLN
Sbjct: 676  LLKTSTSVAYHKTLN 690


>ref|XP_003553755.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X1
            [Glycine max]
          Length = 687

 Score =  785 bits (2027), Expect = 0.0
 Identities = 416/674 (61%), Positives = 509/674 (75%), Gaps = 9/674 (1%)
 Frame = +1

Query: 1    RYSDFIVNEVDLEGKVVRLTSLEAPPELVEETEVKASDEPNKSYDAEIQTFRALAADSDA 180
            RYSDFIVNEVD +G VV+L+SL+AP E  EE      D    SY ++I++F++LA + DA
Sbjct: 30   RYSDFIVNEVDRDGAVVQLSSLDAPLEEPEENRTNTHDTV-VSYASQIESFKSLAEEYDA 88

Query: 181  DMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITSKC 360
             +L+ FI+KI +G E ++ PIVLSP SDKSHR A+HNFFKE  KFLVTD V+GPD +SKC
Sbjct: 89   ILLEEFINKINAGGEDSVSPIVLSPDSDKSHRKAMHNFFKENFKFLVTDVVNGPDASSKC 148

Query: 361  IRVRLNTXXXXXXXXXXXXXN-RDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEALG 537
            IRVRLN+               RDDKP+DSRGS+NWPE++GKFLRFHLYKENKDT EALG
Sbjct: 149  IRVRLNSAEPNNKGKNSKKRKERDDKPFDSRGSENWPENVGKFLRFHLYKENKDTHEALG 208

Query: 538  VIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVNEG 717
            VIG ML IQP+SFGFAGTKDKR+V+TQRVTV+KQ+ASRLA+LN+RL GIKLGDFC+V EG
Sbjct: 209  VIGNMLSIQPKSFGFAGTKDKRAVTTQRVTVYKQQASRLASLNKRLFGIKLGDFCYVKEG 268

Query: 718  LVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIGAT 897
            L LGQL GNRFTITLRG+VA+ EDIIK   +AL + GFINYFGLQRFGS S+PTHLIGA 
Sbjct: 269  LCLGQLLGNRFTITLRGIVADSEDIIKASADALGRHGFINYFGLQRFGSGSLPTHLIGAA 328

Query: 898  LVRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQCLKK 1077
            L+RGEWK AVD+ILDP++GEK AI   R+YYKE+ D+ GTL+QLPR+LVAE+A+LQ LK 
Sbjct: 329  LLRGEWKLAVDMILDPRDGEKSAIAKARKYYKESSDVVGTLKQLPRYLVAERAVLQTLKT 388

Query: 1078 SPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCTRK 1257
            SPGNYLQALK+IPRTLRM+YVHSYQSYLWNHAAS R++KYG + VVLGDLVYC E  T K
Sbjct: 389  SPGNYLQALKSIPRTLRMLYVHSYQSYLWNHAASKRVQKYGTENVVLGDLVYCKENSTGK 448

Query: 1258 E---IGTAYSE-CQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVDD 1425
                +G+ Y+E C+  Y     DS++ DE+S      E I SVK +  EDL++G Y +DD
Sbjct: 449  VTEFVGSEYAEDCRGRY-----DSNNEDEVS--GEIHEEINSVKVIDAEDLNSGCYTIDD 501

Query: 1426 VVLPLPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPKD 1605
            V+LP+PGSRV YP N I   Y DLAKKD ISL ES H++++FSITS+TG YRRVFQKP +
Sbjct: 502  VILPMPGSRVKYPTNHIANVYEDLAKKDGISLTESVHNVEDFSITSITGCYRRVFQKPIN 561

Query: 1606 YEWEMLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYEEQSASFSGG 1785
            +EWE+L+Y D +  L +TD D I KS+    V +    NGK ++      E +S+     
Sbjct: 562  FEWELLSYSDSSEQLVDTDLDKINKSKPMNTVKQMGAANGKNEEAFDCIRELESSD---- 617

Query: 1786 LKDSAK-DNEAESDGTGSLQIELLDGS---GSDTQETQRALKLSFTLPASCYATMAIREL 1953
              D AK +N +E  G    +++L       GS +Q++Q ALKLSFTLPASCYATMAIREL
Sbjct: 618  --DIAKVENYSEILGE---EVKLPHDESLIGSSSQDSQIALKLSFTLPASCYATMAIREL 672

Query: 1954 LKTSTSVAFHKTLN 1995
            LKTSTSVA+HKTLN
Sbjct: 673  LKTSTSVAYHKTLN 686


>ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata subsp. lyrata]
            gi|297330312|gb|EFH60731.1| pseudouridylate synthase
            [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  781 bits (2018), Expect = 0.0
 Identities = 405/667 (60%), Positives = 487/667 (73%), Gaps = 3/667 (0%)
 Frame = +1

Query: 4    YSDFIVNEVDLEGKVVRLTSLEAPPEL--VEETEVKASDEPNKSYDAEIQTFRALAADSD 177
            Y+DFIVNEVD++G VV LTSL+ PPE+   EE + K SD   ++Y + I++FR++++ +D
Sbjct: 66   YADFIVNEVDIDGNVVHLTSLDLPPEMDVKEEDKTKTSDNVPQNYTSAIESFRSISSVTD 125

Query: 178  ADMLKTFIDKIGSGIEVNIEPIVLSPSSDKSHRTALHNFFKEKLKFLVTDTVDGPDITSK 357
            A+ L+T I+++ SG +  I P+VL PSSDKS RTA+HNF KE  KFLVTDTVDGPD TSK
Sbjct: 126  AERLETLINQVTSGTDDEISPVVLDPSSDKSKRTAIHNFVKENFKFLVTDTVDGPDSTSK 185

Query: 358  CIRVRLNTXXXXXXXXXXXXXN-RDDKPYDSRGSDNWPESLGKFLRFHLYKENKDTQEAL 534
            CIRVR+N+               R DKP+DSRGS++WPE +GKFLRFHLYKENKDTQEAL
Sbjct: 186  CIRVRVNSGAHNNRGNRSKKRKERGDKPFDSRGSEHWPEHVGKFLRFHLYKENKDTQEAL 245

Query: 535  GVIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRASRLAALNERLIGIKLGDFCHVNE 714
            G+IGKMLG+QP+SFGF+GTKDKRSVSTQRVTVFKQ+AS+LAALN+RL GIK+GDFCHV E
Sbjct: 246  GLIGKMLGVQPKSFGFSGTKDKRSVSTQRVTVFKQQASKLAALNKRLFGIKVGDFCHVKE 305

Query: 715  GLVLGQLHGNRFTITLRGVVAEHEDIIKEPVNALAKKGFINYFGLQRFGSSSVPTHLIGA 894
            GL+LGQL GNRFTITLRGVVA+ E+ IK+   +L K GFINYFGLQRFGS SVPTH +GA
Sbjct: 306  GLLLGQLMGNRFTITLRGVVADSEETIKKSAESLGKDGFINYFGLQRFGSGSVPTHHVGA 365

Query: 895  TLVRGEWKTAVDLILDPKEGEKEAIRGVREYYKETGDIEGTLRQLPRHLVAEKAILQCLK 1074
             L++GEWK A              +   REYYKETGDI+GTLRQLPR+LVAE+AILQCLK
Sbjct: 366  ALLKGEWKDA------ECSNAWHVVNDAREYYKETGDIDGTLRQLPRYLVAERAILQCLK 419

Query: 1075 KSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRIKKYGVDQVVLGDLVYCNEQCTR 1254
            K PGNYLQALK IPRTLRMMYVHSYQSYLWN+AAS+R+ KYG  QVVLGDLV       +
Sbjct: 420  KCPGNYLQALKGIPRTLRMMYVHSYQSYLWNNAASLRVTKYGTSQVVLGDLVSTKVDAEK 479

Query: 1255 KEIGTAYSECQDGYSNDTQDSDHLDEISETDVPDETITSVKALTEEDLDAGMYKVDDVVL 1434
            + + +  SE  +  S +  D D +D+ +  D+P E    VK ++ EDL+AG Y   D+VL
Sbjct: 480  RMVDSLTSEHNES-SEEALDCDQVDDTAVVDLPAERSDLVKVVSIEDLEAGTYLTSDIVL 538

Query: 1435 PLPGSRVIYPKNDIEEAYHDLAKKDSISLLESAHSIKEFSITSMTGGYRRVFQKPKDYEW 1614
            PLPGSRVIYP NDI E YHDLAKKD ISL ES H +KEFSITSMTGGYRRVFQKP D+EW
Sbjct: 539  PLPGSRVIYPSNDIAEIYHDLAKKDGISLTESIHGVKEFSITSMTGGYRRVFQKPIDFEW 598

Query: 1615 EMLTYRDGNVPLAETDFDVIVKSRSAGKVTEGDLGNGKADQEHVIDYEEQSASFSGGLKD 1794
            E+LTY D N PLAETD D I   +   KV   +    + + E +        S    LKD
Sbjct: 599  ELLTYTDSNKPLAETDLDRITVYKPVDKVGSAE----EIEDEPLKSDTNPHESCETNLKD 654

Query: 1795 SAKDNEAESDGTGSLQIELLDGSGSDTQETQRALKLSFTLPASCYATMAIRELLKTSTSV 1974
                 E E            D    D+++TQ ALK++ TLP+SCYATMAIRELLKTSTSV
Sbjct: 655  QTDSKEDEK-----------DTRNPDSEQTQMALKMALTLPSSCYATMAIRELLKTSTSV 703

Query: 1975 AFHKTLN 1995
            A+HKTLN
Sbjct: 704  AYHKTLN 710