BLASTX nr result
ID: Rauwolfia21_contig00013145
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00013145
(222 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobrom... 102 4e-20
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [... 102 7e-20
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-... 100 3e-19
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-... 99 8e-19
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-... 96 4e-18
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr... 96 4e-18
gb|EXB75636.1| RNA polymerase sigma factor rpoD [Morus notabilis] 92 7e-17
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu... 92 9e-17
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ... 90 3e-16
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] 90 3e-16
ref|XP_006450764.1| hypothetical protein CICLE_v10007968mg [Citr... 89 8e-16
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-... 87 2e-15
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ... 86 4e-15
gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus pe... 84 2e-14
ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps... 84 2e-14
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp.... 84 3e-14
emb|CAD20832.1| sigma factor [Spinacia oleracea] 83 4e-14
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha... 81 2e-13
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi... 81 2e-13
gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana] 81 2e-13
>gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
Length = 848
Score = 102 bits (255), Expect = 4e-20
Identities = 48/73 (65%), Positives = 64/73 (87%)
Frame = -1
Query: 219 SLGKAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGDC 40
+L +AI QI+KARKALS S+GK+PD + IAKFTGL+ AKI SA+KC++VVGS+DQK+GDC
Sbjct: 690 TLSRAIVQIQKARKALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDC 749
Query: 39 ISAKFMEIIPDTS 1
++AK++E IPD S
Sbjct: 750 MNAKYLEFIPDLS 762
>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 560
Score = 102 bits (253), Expect = 7e-20
Identities = 47/73 (64%), Positives = 65/73 (89%)
Frame = -1
Query: 219 SLGKAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGDC 40
+L +AI QI+KARKAL+ SNGK+PD +EIAK+TGL+ AKI SAS+CL+VVGS+DQK+G+
Sbjct: 402 TLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGES 461
Query: 39 ISAKFMEIIPDTS 1
++AK++E +PDTS
Sbjct: 462 LNAKYLEFLPDTS 474
>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
tuberosum]
Length = 555
Score = 99.8 bits (247), Expect = 3e-19
Identities = 49/70 (70%), Positives = 57/70 (81%)
Frame = -1
Query: 210 KAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGDCISA 31
K INQI KARK LS S+GK P +EIAKFTGL+ A+I ASKCL+VVGS+DQKVGDCISA
Sbjct: 401 KVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCISA 460
Query: 30 KFMEIIPDTS 1
K +E+ PD S
Sbjct: 461 KVLELTPDKS 470
>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
lycopersicum]
Length = 551
Score = 98.6 bits (244), Expect = 8e-19
Identities = 48/70 (68%), Positives = 57/70 (81%)
Frame = -1
Query: 210 KAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGDCISA 31
K INQI KARK LS S+GK P +EIAKFTGL+ A+I ASKCL+VVGS+DQKVGDCI+A
Sbjct: 397 KVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCINA 456
Query: 30 KFMEIIPDTS 1
K +E+ PD S
Sbjct: 457 KVLELTPDKS 466
>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
Length = 534
Score = 96.3 bits (238), Expect = 4e-18
Identities = 43/72 (59%), Positives = 63/72 (87%)
Frame = -1
Query: 216 LGKAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGDCI 37
L + I++I+KARKAL+NS+GK+P+ EIAK+TGL+ A+I SAS+CL++VGS+DQK+GDC+
Sbjct: 377 LNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCL 436
Query: 36 SAKFMEIIPDTS 1
+AK++E PD S
Sbjct: 437 NAKYLEFAPDRS 448
>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
gi|557553989|gb|ESR64003.1| hypothetical protein
CICLE_v10007968mg [Citrus clementina]
Length = 534
Score = 96.3 bits (238), Expect = 4e-18
Identities = 43/72 (59%), Positives = 63/72 (87%)
Frame = -1
Query: 216 LGKAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGDCI 37
L + I++I+KARKAL+NS+GK+P+ EIAK+TGL+ A+I SAS+CL++VGS+DQK+GDC+
Sbjct: 377 LNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCL 436
Query: 36 SAKFMEIIPDTS 1
+AK++E PD S
Sbjct: 437 NAKYLEFAPDRS 448
>gb|EXB75636.1| RNA polymerase sigma factor rpoD [Morus notabilis]
Length = 476
Score = 92.0 bits (227), Expect = 7e-17
Identities = 46/73 (63%), Positives = 54/73 (73%)
Frame = -1
Query: 219 SLGKAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGDC 40
+L KAINQI+K RKA+SNS K PD NEIAK TGL+ KI SA CL+VVGS+D K+GDC
Sbjct: 319 TLSKAINQIQKTRKAISNSQRKPPDDNEIAKLTGLSLDKIRSAGNCLRVVGSIDHKIGDC 378
Query: 39 ISAKFMEIIPDTS 1
S K ME + D S
Sbjct: 379 FSGKNMEFMADMS 391
>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| hypothetical protein
POPTR_0006s25090g [Populus trichocarpa]
Length = 559
Score = 91.7 bits (226), Expect = 9e-17
Identities = 45/73 (61%), Positives = 60/73 (82%)
Frame = -1
Query: 219 SLGKAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGDC 40
+L ++IN+I+KARKALSNS+G++PD E+AKFTGL+ AKI SA KCL+VV S+DQK+G+
Sbjct: 401 ALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIGEG 460
Query: 39 ISAKFMEIIPDTS 1
AK+ E IPD S
Sbjct: 461 HYAKYSEFIPDMS 473
>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product
[Vitis vinifera]
Length = 561
Score = 90.1 bits (222), Expect = 3e-16
Identities = 45/73 (61%), Positives = 54/73 (73%)
Frame = -1
Query: 219 SLGKAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGDC 40
+L +AI QI+KARKAL S+G++PD NEIAKFTGL+ AKI SA CL+VVGS DQ DC
Sbjct: 403 TLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDC 462
Query: 39 ISAKFMEIIPDTS 1
A +E PDTS
Sbjct: 463 WGATILEFTPDTS 475
>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 90.1 bits (222), Expect = 3e-16
Identities = 45/73 (61%), Positives = 54/73 (73%)
Frame = -1
Query: 219 SLGKAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGDC 40
+L +AI QI+KARKAL S+G++PD NEIAKFTGL+ AKI SA CL+VVGS DQ DC
Sbjct: 453 TLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDC 512
Query: 39 ISAKFMEIIPDTS 1
A +E PDTS
Sbjct: 513 WGATILEFTPDTS 525
>ref|XP_006450764.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
gi|557553990|gb|ESR64004.1| hypothetical protein
CICLE_v10007968mg [Citrus clementina]
Length = 442
Score = 88.6 bits (218), Expect = 8e-16
Identities = 39/65 (60%), Positives = 59/65 (90%)
Frame = -1
Query: 216 LGKAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGDCI 37
L + I++I+KARKAL+NS+GK+P+ EIAK+TGL+ A+I SAS+CL++VGS+DQK+GDC+
Sbjct: 377 LNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCL 436
Query: 36 SAKFM 22
+AK++
Sbjct: 437 NAKYL 441
>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
subsp. vesca]
Length = 545
Score = 87.4 bits (215), Expect = 2e-15
Identities = 43/72 (59%), Positives = 56/72 (77%)
Frame = -1
Query: 222 SSLGKAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGD 43
++L KAIN+I+KARKA NS+ K+PD EIAK TGL+ AKI SAS+CL+VVGSVD K+ +
Sbjct: 385 NTLSKAINRIQKARKANYNSHMKYPDDEEIAKITGLSLAKISSASRCLRVVGSVDHKIWE 444
Query: 42 CISAKFMEIIPD 7
C + +ME PD
Sbjct: 445 CSAGTYMEFTPD 456
>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine
max]
Length = 551
Score = 86.3 bits (212), Expect = 4e-15
Identities = 41/73 (56%), Positives = 57/73 (78%)
Frame = -1
Query: 219 SLGKAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGDC 40
SL +AINQI+KARKA+ +++ K PD EIAK TGL+ KI SAS CL++V S+DQKVGD
Sbjct: 393 SLNRAINQIQKARKAMKSTHKKCPDDYEIAKMTGLSLDKIKSASNCLRIVASIDQKVGDY 452
Query: 39 ISAKFMEIIPDTS 1
+ ++ME++PD +
Sbjct: 453 LGVEYMELLPDAT 465
>gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
Length = 555
Score = 84.3 bits (207), Expect = 2e-14
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = -1
Query: 219 SLGKAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGDC 40
+L KAINQI+KARKA NS+ K+PD EIAK TGL+ A+I SAS CL+VVGSVD K+ +
Sbjct: 397 TLSKAINQIQKARKANYNSHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWES 456
Query: 39 ISAKFMEIIPDTS 1
+ME PDTS
Sbjct: 457 SDGTYMEFTPDTS 469
>ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella]
gi|482559522|gb|EOA23713.1| hypothetical protein
CARUB_v10016920mg [Capsella rubella]
Length = 581
Score = 84.0 bits (206), Expect = 2e-14
Identities = 42/74 (56%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Frame = -1
Query: 222 SSLGKAINQIRKARKALSNSNG-KHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVG 46
SS+ + INQI+KARK L S+G K+P EI+K T L+ KI +A++CLKVVGS++ KVG
Sbjct: 421 SSIIRTINQIQKARKTLKTSHGIKYPADEEISKLTSLSVKKIRAANQCLKVVGSIENKVG 480
Query: 45 DCISAKFMEIIPDT 4
DC S KF+E PDT
Sbjct: 481 DCFSTKFLEFTPDT 494
>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323785|gb|EFH54206.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 568
Score = 83.6 bits (205), Expect = 3e-14
Identities = 41/75 (54%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Frame = -1
Query: 222 SSLGKAINQIRKARKALSNSNG-KHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVG 46
SS+ + INQI+KARK L S+G K+P +I+K T L+ KI +A++CLKVVGS+++KVG
Sbjct: 408 SSIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVGSIEKKVG 467
Query: 45 DCISAKFMEIIPDTS 1
DC S KF+E PDT+
Sbjct: 468 DCFSTKFLEFTPDTT 482
>emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 82.8 bits (203), Expect = 4e-14
Identities = 39/74 (52%), Positives = 54/74 (72%)
Frame = -1
Query: 222 SSLGKAINQIRKARKALSNSNGKHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVGD 43
++L IN+++KARK L S GKHPD E++K TGL+ KI SA CL++VGS+DQKVG
Sbjct: 390 TTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIVGSLDQKVGH 449
Query: 42 CISAKFMEIIPDTS 1
I+ K++E PDT+
Sbjct: 450 FINMKYLECTPDTA 463
>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
polymerase sigma factor sigC; Short=Sigma factor C;
Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
[Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
[Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC
[Arabidopsis thaliana] gi|133778870|gb|ABO38775.1|
At3g53920 [Arabidopsis thaliana]
gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit
C [Arabidopsis thaliana]
Length = 571
Score = 80.9 bits (198), Expect = 2e-13
Identities = 41/75 (54%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Frame = -1
Query: 222 SSLGKAINQIRKARKALSNSNG-KHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVG 46
SS+ + IN I+KARK L S+G K+ EIAK TG + KI +A++CLKVVGS+D+KVG
Sbjct: 411 SSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVG 470
Query: 45 DCISAKFMEIIPDTS 1
DC + KF+E PDT+
Sbjct: 471 DCFTTKFLEFTPDTT 485
>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 80.9 bits (198), Expect = 2e-13
Identities = 41/75 (54%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Frame = -1
Query: 222 SSLGKAINQIRKARKALSNSNG-KHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVG 46
SS+ + IN I+KARK L S+G K+ EIAK TG + KI +A++CLKVVGS+D+KVG
Sbjct: 411 SSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVG 470
Query: 45 DCISAKFMEIIPDTS 1
DC + KF+E PDT+
Sbjct: 471 DCFTTKFLEFTPDTT 485
>gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
Length = 291
Score = 80.9 bits (198), Expect = 2e-13
Identities = 41/75 (54%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Frame = -1
Query: 222 SSLGKAINQIRKARKALSNSNG-KHPDVNEIAKFTGLTAAKIISASKCLKVVGSVDQKVG 46
SS+ + IN I+KARK L S+G K+ EIAK TG + KI +A++CLKVVGS+D+KVG
Sbjct: 131 SSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVG 190
Query: 45 DCISAKFMEIIPDTS 1
DC + KF+E PDT+
Sbjct: 191 DCFTTKFLEFTPDTT 205