BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00012886
         (1024 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   143   1e-31
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   138   4e-30
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   135   3e-29
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   127   7e-27
ref|XP_006450764.1| hypothetical protein CICLE_v10007968mg [Citr...   118   4e-24
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   118   4e-24
ref|XP_006450758.1| hypothetical protein CICLE_v10007968mg [Citr...   118   4e-24
ref|XP_006450757.1| hypothetical protein CICLE_v10007968mg [Citr...   118   4e-24
ref|XP_006450755.1| hypothetical protein CICLE_v10007968mg [Citr...   118   4e-24
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   116   1e-23
gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus pe...   115   3e-23
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-...   113   1e-22
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   107   8e-21
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   102   2e-19
gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobrom...    99   4e-18
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...    97   8e-18
ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago trun...    96   2e-17
ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-...    95   4e-17
emb|CAD20832.1| sigma factor [Spinacia oleracea]                       89   3e-15
ref|XP_006601060.1| PREDICTED: RNA polymerase sigma factor sigC ...    77   1e-11

>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           tuberosum]
          Length = 555

 Score =  143 bits (360), Expect = 1e-31
 Identities = 104/275 (37%), Positives = 133/275 (48%), Gaps = 12/275 (4%)
 Frame = -2

Query: 789 MGFRLNLRWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSARM----------PFHSVIHE 640
           MGFRL+L+WG                  S KG EA YD AR           P HS    
Sbjct: 1   MGFRLHLKWGFSVQPPFSSNSSSWPSSHSFKGREALYDPARSLKPFITGDCEPSHSDPFR 60

Query: 639 ERIAILGDSLRDQRCSLSTEVLDNEITPAPGTGSYSMLHDNVRRSTDANNITQLTSFRGT 460
            +  +    L     S++TE+       +P      +    +  S D    T L +   T
Sbjct: 61  VQTCLSDPQLWTSDTSVTTEIKTRNGRGSPSNVYGDIGSHKIGISPDGEKPTYLNT---T 117

Query: 459 KALYFSLLMKNLDILEEKIADSELIRLERDILVQLEKLGALELFQTRLLRTLKPSTSSYL 280
           K+L+FSLLMKNLD+LE   ADSE+ RLERDILVQLEKLGALE F T L RT   ST   +
Sbjct: 118 KSLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSTFPKV 177

Query: 279 SNAPRDLVEETRVNIPADDLTRKVLVHS--VXXXXXXXXXXXXXXXXXXEQERHSKTNEK 106
            + PR+L++E   +    +   KV+V S                       + H+K  ++
Sbjct: 178 LDVPRELIKEVEKDDLVGNAIDKVVVRSRKKQERKSRRNRASRNANDIITVQPHTKNIQE 237

Query: 105 GRQQPILSSGKSALNSRTKRQKIARNEADMSRGVK 1
             QQP   SGK    SR KRQKIA+NEA+MSRGVK
Sbjct: 238 DLQQPKFYSGKRTQASRNKRQKIAKNEAEMSRGVK 272


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score =  138 bits (347), Expect = 4e-30
 Identities = 102/275 (37%), Positives = 136/275 (49%), Gaps = 12/275 (4%)
 Frame = -2

Query: 789 MGFRLNLRWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSARMPFHSVIHEERIAILGDSL 610
           MGFRLNL+W                   S++G EA +DS R  F SV  E+  ++  D  
Sbjct: 3   MGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKDPF 62

Query: 609 RDQRCS---LSTEVLDNEITPAPGTGSYSMLHDNVRRSTDANNI-------TQLTSFRGT 460
           +   CS   L T   D     A         H ++ +  +A+           +   + +
Sbjct: 63  KPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQAS 122

Query: 459 KALYFSLLMKNLDILEEKIADSELIRLERDILVQLEKLGALELFQTRLLRTLKPSTSSYL 280
           KA  FSLL++NLDILEE  ADS ++RLERDI+VQL +LGAL+LFQ  L RTLK STS  L
Sbjct: 123 KASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSFDL 182

Query: 279 SNAPRDLVEETRVNIPADDLTRKVLVHSVXXXXXXXXXXXXXXXXXXEQ--ERHSKTNEK 106
            +AP + + E + N   DD   KV+V S                          SKT  K
Sbjct: 183 FSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRK 242

Query: 105 GRQQPILSSGKSALNSRTKRQKIARNEADMSRGVK 1
           G  +P +S+ K  LNSR KR   A+NEA+MS+GVK
Sbjct: 243 GPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVK 277


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
           lycopersicum]
          Length = 551

 Score =  135 bits (340), Expect = 3e-29
 Identities = 103/276 (37%), Positives = 134/276 (48%), Gaps = 13/276 (4%)
 Frame = -2

Query: 789 MGFRLNLRWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSARM----------PFHSVIHE 640
           MGFRL+L+WG                  S KG E  YD AR           P HS    
Sbjct: 1   MGFRLHLKWGFSLQPPFSSNSSSWPSSHSFKGRETLYDPARSLKPFINGDCEPSHSDPFR 60

Query: 639 ERIAILGDSLRDQRCSLSTEVLDNEITPAPGTGSYSMLHDNVRR-STDANNITQLTSFRG 463
            +  +    L     S++TE          G GS S ++ ++     D    T L +   
Sbjct: 61  VQTCLSDPQLWTSDASVTTETKTRN-----GRGSPSNVYGDIGSYKIDGEKPTYLNT--- 112

Query: 462 TKALYFSLLMKNLDILEEKIADSELIRLERDILVQLEKLGALELFQTRLLRTLKPSTSSY 283
           TK+L+FSLLMKNLD+LE   ADSE+ RLERDILVQLEKLGALE F T L RT   S+   
Sbjct: 113 TKSLHFSLLMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSSFPK 172

Query: 282 LSNAPRDLVEETRVNIPADDLTRKVLVHS--VXXXXXXXXXXXXXXXXXXEQERHSKTNE 109
           + + PR+L++E   +    +   KV+V S                       + H+K  +
Sbjct: 173 VLDVPRELIKEVEKDDLVGNAMDKVVVRSRKKQERMSRRKRASRNANDIITVQPHTKNIQ 232

Query: 108 KGRQQPILSSGKSALNSRTKRQKIARNEADMSRGVK 1
           +  QQ    SGK    SRTKRQKIA+NEA+MS+GVK
Sbjct: 233 EDLQQLKFYSGKRTHASRTKRQKIAKNEAEMSKGVK 268


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  127 bits (319), Expect = 7e-27
 Identities = 93/246 (37%), Positives = 126/246 (51%), Gaps = 12/246 (4%)
 Frame = -2

Query: 702 LKGNEAFYDSARMPFHSVIHEERIAILGDSLRDQRCS---LSTEVLDNEITPAPGTGSYS 532
           ++G EA +DS R  F SV  E+  ++  D  +   CS   L T   D     A       
Sbjct: 82  IQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGK 141

Query: 531 MLHDNVRRSTDANNI-------TQLTSFRGTKALYFSLLMKNLDILEEKIADSELIRLER 373
             H ++ +  +A+           +   + +KA  FSLL++NLDILEE  ADS ++RLER
Sbjct: 142 CSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLER 201

Query: 372 DILVQLEKLGALELFQTRLLRTLKPSTSSYLSNAPRDLVEETRVNIPADDLTRKVLVHSV 193
           DI+VQL +LGAL+LFQ  L RTLK STS  L +AP + + E + N   DD   KV+V S 
Sbjct: 202 DIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSG 261

Query: 192 XXXXXXXXXXXXXXXXXXEQ--ERHSKTNEKGRQQPILSSGKSALNSRTKRQKIARNEAD 19
                                    SKT  KG  +P +S+ K  LNSR KR   A+NEA+
Sbjct: 262 KKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAE 321

Query: 18  MSRGVK 1
           MS+GVK
Sbjct: 322 MSKGVK 327


>ref|XP_006450764.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|557553990|gb|ESR64004.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 442

 Score =  118 bits (295), Expect = 4e-24
 Identities = 93/266 (34%), Positives = 134/266 (50%), Gaps = 3/266 (1%)
 Frame = -2

Query: 789 MGFRLNLRWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSARMPFHSVIHEERIAILGDSL 610
           MGFRLNL+W                   S++G E  ++SAR+ F S I E+  +   D +
Sbjct: 3   MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 609 RDQRCS-LSTEVLDNEITPAPGTGSYSMLHDNVRRSTDANNITQLTSFRGTKALYFSLLM 433
           +   CS ++T+ ++N+         YS   +  ++ST    I Q  S R      F LLM
Sbjct: 63  KAYTCSFVNTQTVEND---------YSETEEIRQKSTSC--IGQDASSRSD----FRLLM 107

Query: 432 KNLDILEEKIADSELIRLERDILVQLEKLGALELFQTRLLRTLKPSTSSYLSNAPRDLVE 253
           +NLD+LE   ADS+ +RLER+IL QL KLGAL+LF + L R +K S    LS+      E
Sbjct: 108 ENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVH---TE 164

Query: 252 ETRVNIPADDLTRKVLVHSVXXXXXXXXXXXXXXXXXXEQ--ERHSKTNEKGRQQPILSS 79
           E ++N   D    K+LV S                          S+  ++G +QP + S
Sbjct: 165 EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFS 224

Query: 78  GKSALNSRTKRQKIARNEADMSRGVK 1
            + ALNSR +R  IARNEA+MS+GV+
Sbjct: 225 PERALNSRGRRLMIARNEAEMSKGVQ 250


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|557553989|gb|ESR64003.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  118 bits (295), Expect = 4e-24
 Identities = 93/266 (34%), Positives = 134/266 (50%), Gaps = 3/266 (1%)
 Frame = -2

Query: 789 MGFRLNLRWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSARMPFHSVIHEERIAILGDSL 610
           MGFRLNL+W                   S++G E  ++SAR+ F S I E+  +   D +
Sbjct: 3   MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 609 RDQRCS-LSTEVLDNEITPAPGTGSYSMLHDNVRRSTDANNITQLTSFRGTKALYFSLLM 433
           +   CS ++T+ ++N+         YS   +  ++ST    I Q  S R      F LLM
Sbjct: 63  KAYTCSFVNTQTVEND---------YSETEEIRQKSTSC--IGQDASSRSD----FRLLM 107

Query: 432 KNLDILEEKIADSELIRLERDILVQLEKLGALELFQTRLLRTLKPSTSSYLSNAPRDLVE 253
           +NLD+LE   ADS+ +RLER+IL QL KLGAL+LF + L R +K S    LS+      E
Sbjct: 108 ENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVH---TE 164

Query: 252 ETRVNIPADDLTRKVLVHSVXXXXXXXXXXXXXXXXXXEQ--ERHSKTNEKGRQQPILSS 79
           E ++N   D    K+LV S                          S+  ++G +QP + S
Sbjct: 165 EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFS 224

Query: 78  GKSALNSRTKRQKIARNEADMSRGVK 1
            + ALNSR +R  IARNEA+MS+GV+
Sbjct: 225 PERALNSRGRRLMIARNEAEMSKGVQ 250


>ref|XP_006450758.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|567917506|ref|XP_006450759.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553984|gb|ESR63998.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553985|gb|ESR63999.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 383

 Score =  118 bits (295), Expect = 4e-24
 Identities = 93/266 (34%), Positives = 134/266 (50%), Gaps = 3/266 (1%)
 Frame = -2

Query: 789 MGFRLNLRWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSARMPFHSVIHEERIAILGDSL 610
           MGFRLNL+W                   S++G E  ++SAR+ F S I E+  +   D +
Sbjct: 3   MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 609 RDQRCS-LSTEVLDNEITPAPGTGSYSMLHDNVRRSTDANNITQLTSFRGTKALYFSLLM 433
           +   CS ++T+ ++N+         YS   +  ++ST    I Q  S R      F LLM
Sbjct: 63  KAYTCSFVNTQTVEND---------YSETEEIRQKSTSC--IGQDASSRSD----FRLLM 107

Query: 432 KNLDILEEKIADSELIRLERDILVQLEKLGALELFQTRLLRTLKPSTSSYLSNAPRDLVE 253
           +NLD+LE   ADS+ +RLER+IL QL KLGAL+LF + L R +K S    LS+      E
Sbjct: 108 ENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVH---TE 164

Query: 252 ETRVNIPADDLTRKVLVHSVXXXXXXXXXXXXXXXXXXEQ--ERHSKTNEKGRQQPILSS 79
           E ++N   D    K+LV S                          S+  ++G +QP + S
Sbjct: 165 EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFS 224

Query: 78  GKSALNSRTKRQKIARNEADMSRGVK 1
            + ALNSR +R  IARNEA+MS+GV+
Sbjct: 225 PERALNSRGRRLMIARNEAEMSKGVQ 250


>ref|XP_006450757.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|567917512|ref|XP_006450762.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553983|gb|ESR63997.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553988|gb|ESR64002.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 381

 Score =  118 bits (295), Expect = 4e-24
 Identities = 93/266 (34%), Positives = 134/266 (50%), Gaps = 3/266 (1%)
 Frame = -2

Query: 789 MGFRLNLRWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSARMPFHSVIHEERIAILGDSL 610
           MGFRLNL+W                   S++G E  ++SAR+ F S I E+  +   D +
Sbjct: 3   MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 609 RDQRCS-LSTEVLDNEITPAPGTGSYSMLHDNVRRSTDANNITQLTSFRGTKALYFSLLM 433
           +   CS ++T+ ++N+         YS   +  ++ST    I Q  S R      F LLM
Sbjct: 63  KAYTCSFVNTQTVEND---------YSETEEIRQKSTSC--IGQDASSRSD----FRLLM 107

Query: 432 KNLDILEEKIADSELIRLERDILVQLEKLGALELFQTRLLRTLKPSTSSYLSNAPRDLVE 253
           +NLD+LE   ADS+ +RLER+IL QL KLGAL+LF + L R +K S    LS+      E
Sbjct: 108 ENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVH---TE 164

Query: 252 ETRVNIPADDLTRKVLVHSVXXXXXXXXXXXXXXXXXXEQ--ERHSKTNEKGRQQPILSS 79
           E ++N   D    K+LV S                          S+  ++G +QP + S
Sbjct: 165 EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFS 224

Query: 78  GKSALNSRTKRQKIARNEADMSRGVK 1
            + ALNSR +R  IARNEA+MS+GV+
Sbjct: 225 PERALNSRGRRLMIARNEAEMSKGVQ 250


>ref|XP_006450755.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
           gi|567917500|ref|XP_006450756.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|567917508|ref|XP_006450760.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|567917510|ref|XP_006450761.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553981|gb|ESR63995.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553982|gb|ESR63996.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553986|gb|ESR64000.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
           gi|557553987|gb|ESR64001.1| hypothetical protein
           CICLE_v10007968mg [Citrus clementina]
          Length = 286

 Score =  118 bits (295), Expect = 4e-24
 Identities = 93/266 (34%), Positives = 134/266 (50%), Gaps = 3/266 (1%)
 Frame = -2

Query: 789 MGFRLNLRWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSARMPFHSVIHEERIAILGDSL 610
           MGFRLNL+W                   S++G E  ++SAR+ F S I E+  +   D +
Sbjct: 3   MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 609 RDQRCS-LSTEVLDNEITPAPGTGSYSMLHDNVRRSTDANNITQLTSFRGTKALYFSLLM 433
           +   CS ++T+ ++N+         YS   +  ++ST    I Q  S R      F LLM
Sbjct: 63  KAYTCSFVNTQTVEND---------YSETEEIRQKSTSC--IGQDASSRSD----FRLLM 107

Query: 432 KNLDILEEKIADSELIRLERDILVQLEKLGALELFQTRLLRTLKPSTSSYLSNAPRDLVE 253
           +NLD+LE   ADS+ +RLER+IL QL KLGAL+LF + L R +K S    LS+      E
Sbjct: 108 ENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVH---TE 164

Query: 252 ETRVNIPADDLTRKVLVHSVXXXXXXXXXXXXXXXXXXEQ--ERHSKTNEKGRQQPILSS 79
           E ++N   D    K+LV S                          S+  ++G +QP + S
Sbjct: 165 EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFS 224

Query: 78  GKSALNSRTKRQKIARNEADMSRGVK 1
            + ALNSR +R  IARNEA+MS+GV+
Sbjct: 225 PERALNSRGRRLMIARNEAEMSKGVQ 250


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  116 bits (291), Expect = 1e-23
 Identities = 92/266 (34%), Positives = 134/266 (50%), Gaps = 3/266 (1%)
 Frame = -2

Query: 789 MGFRLNLRWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSARMPFHSVIHEERIAILGDSL 610
           MGFRLNL+W                   S++G E  ++SAR+ F S I E+  +   D +
Sbjct: 3   MGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPV 62

Query: 609 RDQRCS-LSTEVLDNEITPAPGTGSYSMLHDNVRRSTDANNITQLTSFRGTKALYFSLLM 433
           +   CS ++T+ ++N+         YS   +  ++ST    I Q  S R      F LLM
Sbjct: 63  KAYTCSFVNTQTVEND---------YSETEEIRQKSTSC--IGQDASSRSD----FRLLM 107

Query: 432 KNLDILEEKIADSELIRLERDILVQLEKLGALELFQTRLLRTLKPSTSSYLSNAPRDLVE 253
           +NLD+LE   ADS+ +RLER+IL QL KLGAL+LF + L R +K S    LS+      E
Sbjct: 108 ENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVH---TE 164

Query: 252 ETRVNIPADDLTRKVLVHSVXXXXXXXXXXXXXXXXXXEQ--ERHSKTNEKGRQQPILSS 79
           E +++   D    K+LV S                          S+  ++G +QP + S
Sbjct: 165 EQKMDDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETYLLSLPSEALQEGLKQPTIFS 224

Query: 78  GKSALNSRTKRQKIARNEADMSRGVK 1
            + ALNSR +R  IARNEA+MS+GV+
Sbjct: 225 AERALNSRGRRLMIARNEAEMSKGVQ 250


>gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  115 bits (288), Expect = 3e-23
 Identities = 91/272 (33%), Positives = 140/272 (51%), Gaps = 9/272 (3%)
 Frame = -2

Query: 789 MGFRLNLRWGXXXXXXXXXXXXXXXXXXS-LKGNEAFYDSARMPFHSVIHEERIAILGDS 613
           +GFRLNL+ G                  + ++G E  ++SAR+ F SVI EE  A   D 
Sbjct: 3   LGFRLNLKCGFPVHSSHWQTTSPSKISSTSVRGREGSFNSARLSFLSVISEEGEASSKDP 62

Query: 612 LRDQRC-SLSTEVLDNEITPAPGTGSYSMLHDNVRRSTDANNIT----QLTSFRGTKAL- 451
           L+     S S ++L++ ++              V +S   N +     +  S +G +A  
Sbjct: 63  LKVYTFPSASPQILEDGVSELE---EVKTAFRRVPKSFSDNQMPVAEGKFISSKGLEACT 119

Query: 450 --YFSLLMKNLDILEEKIADSELIRLERDILVQLEKLGALELFQTRLLRTLKPSTSSYLS 277
             +FSLL++NL++LEE  A S++++LE++IL+QL +LGAL+LF   L RTLK S+   LS
Sbjct: 120 ASHFSLLLQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTLKTSSFLDLS 179

Query: 276 NAPRDLVEETRVNIPADDLTRKVLVHSVXXXXXXXXXXXXXXXXXXEQERHSKTNEKGRQ 97
           + P   VEE ++    D+   +++V S                         KT  KG +
Sbjct: 180 DIPTVPVEEGKMERKEDNNVGEIIVRSGKKEERRSRKRTSDNAIVSSNSLPPKTIWKGLK 239

Query: 96  QPILSSGKSALNSRTKRQKIARNEADMSRGVK 1
           +P LSSGK A N R++R  I++NEA+MS GVK
Sbjct: 240 KPTLSSGKRASNYRSRRLTISKNEAEMSIGVK 271


>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
           gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
           polymerase sigma factor sigC-like [Cucumis sativus]
          Length = 559

 Score =  113 bits (283), Expect = 1e-22
 Identities = 93/274 (33%), Positives = 129/274 (47%), Gaps = 13/274 (4%)
 Frame = -2

Query: 783 FRLNLRWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSARMPFHSVIHEERIAILGDSLRD 604
           FR NLRWG                  + KG EA ++S R+ F S I EE  +I  ++L+ 
Sbjct: 5   FRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKT 64

Query: 603 QRC------SLSTEVLD-NEITPAPGTGSYSMLHDNV---RRSTDANNITQLTSFRGTKA 454
             C      + + ++L+  EI    G  S   +H  +   R S   +N +  TS    KA
Sbjct: 65  YTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLPTGKA 124

Query: 453 LYFSLLMKNLDILEEKIADSELIRLERDILVQLEKLGALELFQTRLLRTLKPSTSSYLSN 274
             F +LM+NLD+LEE   +S ++ LERDI++QL KLGALE F T L RTLK S+    S 
Sbjct: 125 SPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSG 184

Query: 273 APRDLVEETRVNIPADDLTRKVLVHSVXXXXXXXXXXXXXXXXXXEQERHSKT---NEKG 103
            P +  E+  VN   +D    V V+S                      R   T    EK 
Sbjct: 185 LPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKI 244

Query: 102 RQQPILSSGKSALNSRTKRQKIARNEADMSRGVK 1
            +  + S  KS+ NS  +R  +A NEA+MS GVK
Sbjct: 245 HRSTVFSRKKSS-NSSKRRLIVAINEAEMSTGVK 277


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score =  107 bits (267), Expect = 8e-21
 Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 10/244 (4%)
 Frame = -2

Query: 702 LKGNEAFYDSARMPFHSVIHEERIAILGDSLRDQRCSLSTEVLDNEITPAPGT----GSY 535
           ++G EA    +R+ F SVI EE      D L+    S + + ++NE +   G     G  
Sbjct: 33  VRGREATSYQSRLSFLSVISEEGDIAHRDPLKTYAYSYAVQTVENEHSQGEGFKVNFGKR 92

Query: 534 SMLHDNVRRSTDAN---NITQLTSFRGTKALYFSLLMKNLDILEEKIADSELIRLERDIL 364
           S    N+    + +   +I    S    +   FSLL++NL+ILE+  ADS+  +LE DIL
Sbjct: 93  SHFGLNIIGDAEVSLKEDIFVSPSSTKERTSRFSLLLENLNILEQSFADSDASKLEEDIL 152

Query: 363 VQLEKLGALELFQTRLLRTLKPSTSSYLSNAPRDLVEETRVNIPADDLTRKVLVHSVXXX 184
           +QL KLGAL+LF T L RTL+ +    +S+   +++ E  +N  + +   KV+VH+    
Sbjct: 153 LQLGKLGALKLFNTCLTRTLETTNVLEVSDVHTEIIGECNINGTSINNQIKVVVHTAKKE 212

Query: 183 XXXXXXXXXXXXXXXEQER---HSKTNEKGRQQPILSSGKSALNSRTKRQKIARNEADMS 13
                          +       S+  + G ++P +SSGK A  S+++R  IARNEA+M+
Sbjct: 213 ERKSRRERASARKGHKSPSLPLPSRPIQSGSEKPTVSSGKKASKSKSRRLIIARNEAEMA 272

Query: 12  RGVK 1
           RG+K
Sbjct: 273 RGIK 276


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
           subsp. vesca]
          Length = 545

 Score =  102 bits (255), Expect = 2e-19
 Identities = 87/269 (32%), Positives = 133/269 (49%), Gaps = 6/269 (2%)
 Frame = -2

Query: 789 MGFRLNLRWGXXXXXXXXXXXXXXXXXXS-LKGNEAFYDSARMPFHSVIHEERIAILGDS 613
           +GFRLNL+ G                  S ++G E  + SA + F SVI EE      D 
Sbjct: 3   LGFRLNLKCGFPIHNSHWQTNSPSKLPSSSVRGREGSFSSAGLSFLSVISEECETSSKDP 62

Query: 612 LRDQRC-SLSTEVLDNEITPAPGTGSYSMLHDNVRRSTDANNITQ----LTSFRGTKALY 448
           L+   C S S ++LD+ ++         M    + +S  AN I        S  G +  +
Sbjct: 63  LKVYTCPSASPQLLDDGLSEM----EEKMNPRRMSKSGSANMIDDKEYSFMSSAGLRTSH 118

Query: 447 FSLLMKNLDILEEKIADSELIRLERDILVQLEKLGALELFQTRLLRTLKPSTSSYLSNAP 268
           ++LL++NL++LEE  ADS + +LE++IL+QL +LGAL+LF+  L RTLK S+   LS+ P
Sbjct: 119 YTLLLQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFEICLSRTLKTSSFLDLSDIP 178

Query: 267 RDLVEETRVNIPADDLTRKVLVHSVXXXXXXXXXXXXXXXXXXEQERHSKTNEKGRQQPI 88
            + +E+ +         RK +V S                         K   +G ++P 
Sbjct: 179 TEPIEKHKTE-------RKNIVRSGKKEEQKSRKRTSYDSKKFSGTLPVKQMREGFKKPN 231

Query: 87  LSSGKSALNSRTKRQKIARNEADMSRGVK 1
            SS + A NSR++R  +A+NEA+MS GVK
Sbjct: 232 PSSVRRASNSRSRRLMMAKNEAEMSVGVK 260


>gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
          Length = 848

 Score = 98.6 bits (244), Expect = 4e-18
 Identities = 70/190 (36%), Positives = 102/190 (53%), Gaps = 7/190 (3%)
 Frame = -2

Query: 549 GTGSYSMLH-----DNVRRSTDANNITQLTSFRGTKALYFSLLMKNLDILEEKIADSELI 385
           G GS +  H     D        +  +  TS +  KA ++SLLM+NLD+LEE  ADS+++
Sbjct: 376 GKGSQAHSHSLTMIDKTHELIGGDKSSSRTSPQACKASHYSLLMENLDVLEETFADSDVL 435

Query: 384 RLERDILVQLEKLGALELFQTRLLRTLKPSTSSYLSNAPRDLVEETRVNIPADDLTRKVL 205
            LER+IL+QL + GAL+LF T L RTLK S    LS+ P +   +  +N+  D     ++
Sbjct: 436 TLEREILLQLGRFGALKLFNTCLSRTLKASNILDLSDVPAN-SGDCNMNLSVDGQKDNIV 494

Query: 204 VHSVXXXXXXXXXXXXXXXXXXEQERHSKTNE-KGR-QQPILSSGKSALNSRTKRQKIAR 31
           V S                      +   +N   GR Q+P +SS K   +SR++R +IAR
Sbjct: 495 VCSRKKKQRKKIRERALENPTIISTQLMPSNTLHGRFQKPKVSSAKRVSDSRSRRLRIAR 554

Query: 30  NEADMSRGVK 1
           NEA+MS+GVK
Sbjct: 555 NEAEMSKGVK 564


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
           gi|222854562|gb|EEE92109.1| hypothetical protein
           POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score = 97.4 bits (241), Expect = 8e-18
 Identities = 83/275 (30%), Positives = 120/275 (43%), Gaps = 12/275 (4%)
 Frame = -2

Query: 789 MGFRLNLRWGXXXXXXXXXXXXXXXXXXSLKGNEAFYDSARMPFHSVIHEERIAILGDSL 610
           +GFRL  +WG                  S +G EA  + AR+ F SV+ EE   +   S 
Sbjct: 3   VGFRLTPKWGSPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKHSF 62

Query: 609 RDQRCSLSTEVLDNEI---------TPAPGTGSYSMLHDNVRRSTDANNITQLTSFRGTK 457
           +   CS + + ++N+                 S + +  N + S +    T  T  R   
Sbjct: 63  KSFACSSAAQNVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLRERM 122

Query: 456 ALYFSLLMKNLDILEEKIADSELIRLERDILVQLEKLGALELFQTRLLRTLKPSTSSYLS 277
               S L+ NLD LE+ +AD + ++LERDIL+QL +LGALE F   L RTL+ S    LS
Sbjct: 123 TSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVLDLS 182

Query: 276 NAPRDLVEETRVNIPADDLTRKVLVHS---VXXXXXXXXXXXXXXXXXXEQERHSKTNEK 106
             P +   E++ +    DLT K +V +                           SKT + 
Sbjct: 183 AVPTENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKTVQN 242

Query: 105 GRQQPILSSGKSALNSRTKRQKIARNEADMSRGVK 1
              +P      S+ +SR  R  IARNEA M+RGVK
Sbjct: 243 NLPKPTFVKRTSSSSSR--RSLIARNEAKMTRGVK 275


>ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
           gi|355477497|gb|AES58700.1| RNA polymerase sigma-B
           factor [Medicago truncatula]
          Length = 549

 Score = 95.9 bits (237), Expect = 2e-17
 Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 4/236 (1%)
 Frame = -2

Query: 696 GNEAFYDSARMPFHSVIHEERIAILGDSLRDQRCSLSTEVLDNEITPAPGTGSYSMLHDN 517
           G E  ++  R+   S ++EE   +  D  +    S + E  + ++      G  + ++  
Sbjct: 42  GRETLFNPVRLSLLSTVYEEGETLQKDFRKTFAFSSALEAPEKDLLQG---GELTKVNKG 98

Query: 516 VRRSTDANNITQLTSFRGTKALYFSLLMKNLDILEEKIADSELIRLERDILVQLEKLGAL 337
            R  +  + +    S    +  +F LLM+NL +LEE  ADSE +RLE++I++QLEKLGAL
Sbjct: 99  KRSLSSVHEMID-NSHLPFEESHFGLLMENLGVLEETFADSEALRLEKNIILQLEKLGAL 157

Query: 336 ELFQTRLLRTLKPSTSSYLSNAPRDLVEETRVNIPADDLTRKVLVHSVXXXXXXXXXXXX 157
           ELF   L  +   S  S  ++   + VEE + N   DD T KV+VHS             
Sbjct: 158 ELFNVCLTTSFGTSCISNCTHKVLEQVEENKRNHKVDDYTGKVIVHS---SKRKENRRRK 214

Query: 156 XXXXXXEQERHSKTNEKGRQQPILSSG----KSALNSRTKRQKIARNEADMSRGVK 1
                      S   +  ++ P+ SS     K A N++ KR  IA+ E +MS+GVK
Sbjct: 215 RGSVSIAPSSRSLPLDDNQEDPLRSSPASFVKRASNTKNKRAVIAQREVEMSKGVK 270


>ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
          Length = 545

 Score = 95.1 bits (235), Expect = 4e-17
 Identities = 78/240 (32%), Positives = 114/240 (47%), Gaps = 8/240 (3%)
 Frame = -2

Query: 696 GNEAFYDSARMPFHSVIHEERIAILGDSLRDQRCSLST------EVLDNEITPA-PGTGS 538
           G E F++  R+   S ++EE   +  D  +    S S       ++L  E+T    G  S
Sbjct: 34  GREVFFNPTRLSLLSTVYEEGETLQKDFGKTFAFSSSALEVPEMDLLQGEVTKVNKGKRS 93

Query: 537 YSMLHDNVRRSTDANNITQLTSFRGTKALYFSLLMKNLDILEEKIADSELIRLERDILVQ 358
            S +H+ +         TQL         +F LLM+NL ILEE  ADSE +RLE+DI+++
Sbjct: 94  LSSVHEIIDN-------TQLPFGEP----HFGLLMENLGILEETFADSEAMRLEKDIVLK 142

Query: 357 LEKLGALELFQTRLLRTLKPSTSSYLSNAPRDLVEETRVNIPADDLTRKVLVHSVXXXXX 178
           LEKLGALELF   L R+   ST S  ++   + V+E + N   D+ T KV+V S      
Sbjct: 143 LEKLGALELFNVCLTRSFGTSTESNCTDVVLEHVKEKKRNFKVDNYTGKVVVQSKRKENR 202

Query: 177 XXXXXXXXXXXXXEQERH-SKTNEKGRQQPILSSGKSALNSRTKRQKIARNEADMSRGVK 1
                         Q       N++G  +   S  K   N+  +R  IA+ E +MS+GVK
Sbjct: 203 TRRKQASVAITTSFQSLPLEDNNQEGPLRLPASLVKRVSNTNNRRAVIAQREVEMSKGVK 262


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score = 89.0 bits (219), Expect = 3e-15
 Identities = 68/238 (28%), Positives = 121/238 (50%), Gaps = 5/238 (2%)
 Frame = -2

Query: 699 KGNEAFYDSARMPFHSVIHEERIAILGDSLRDQRCSLSTEV-LDNEITPAPGTGSYSMLH 523
           +G E  + SAR+   ++  +E   +  D+LR    S S  + ++N+ +    T S     
Sbjct: 34  RGKELDFGSARLSLLTIGFDESETLRKDTLRPHAGSSSVPLTVENDYSNLETTISKRSCK 93

Query: 522 DNVRRS---TDANNITQLTSFRGTKALYFSLLMKNLDILEEKIADSELIRLERDILVQLE 352
           D +  +   +D +    + S +   A +F  LM N+++LE K++DSEL++LE+DILVQL 
Sbjct: 94  DLISDTEVLSDRDVSVYVRSVQSCSASHFHTLMANINLLENKVSDSELLKLEKDILVQLG 153

Query: 351 KLGALELFQTRLLRTLKPSTSSYLSNAPRDLVEETRVNIPADDLTRKVLVHSVXXXXXXX 172
           +LGAL+LF   L R +       +S+ P  + E+ + N+  D+  +K LV S        
Sbjct: 154 RLGALQLFHACLSRIID------MSDLPGLITEDGKANVRKDNELKKKLVFSKRKEERKL 207

Query: 171 XXXXXXXXXXXEQ-ERHSKTNEKGRQQPILSSGKSALNSRTKRQKIARNEADMSRGVK 1
                      ++    S+++ +     ++S+      +R +R  IA+NEA+MSRG+K
Sbjct: 208 RQERRLQASTSKRCACKSESSIESSIHHVVSTAAKKTKARGRRAIIAKNEAEMSRGIK 265


>ref|XP_006601060.1| PREDICTED: RNA polymerase sigma factor sigC isoform X3 [Glycine
           max]
          Length = 459

 Score = 77.0 bits (188), Expect = 1e-11
 Identities = 78/241 (32%), Positives = 107/241 (44%), Gaps = 11/241 (4%)
 Frame = -2

Query: 690 EAFYDSARMPFHSVIHEERIAILGDSLRDQRCSLST-EVLDN------EITPAPGTGSYS 532
           E  ++  R+ F S  +EE  A+  D  R    S S  E L+N      E     G  S S
Sbjct: 41  ETCFNFTRLSFPSTFYEEGEALQKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSLS 100

Query: 531 MLH---DNVRRSTDANNITQLTSFRGTKALYFSLLMKNLDILEEKIADSELIRLERDILV 361
            +H   DN +      + T    F   +A +F LLM+NL +LEE   DSE +RLE+ I++
Sbjct: 101 SVHKMIDNTQMPFGEVS-TVSKKFESFRAQHFRLLMENLCVLEETFVDSEALRLEKAIIL 159

Query: 360 QLEKLGALELFQTRLLRTLKPSTSSYLSNAPRDLVEETRVNIPADDLTRKVLVH-SVXXX 184
           QL KLGALELF   L R+L  S  S  ++               DD   KV+V  S    
Sbjct: 160 QLGKLGALELFNVCLSRSLGTSLVSNYAD-------------KVDDYKDKVVVQSSKKKE 206

Query: 183 XXXXXXXXXXXXXXXEQERHSKTNEKGRQQPILSSGKSALNSRTKRQKIARNEADMSRGV 4
                           Q    K N++       S  K A N++ KR  +A+ EA+MS+GV
Sbjct: 207 NKTRRKREFVSTAVSSQSLTLKANQEDLLGFSASLVKRAPNTKNKRILVAKREAEMSKGV 266

Query: 3   K 1
           K
Sbjct: 267 K 267