BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00011482
         (763 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002318240.2| hypothetical protein POPTR_0012s13610g [Popu...   157   3e-36
ref|XP_006395370.1| hypothetical protein EUTSA_v10005087mg [Eutr...   153   7e-35
ref|XP_002322450.1| DNA-directed RNA polymerase II family protei...   153   7e-35
ref|XP_006421865.1| hypothetical protein CICLE_v10006171mg [Citr...   152   9e-35
gb|EAY90802.1| hypothetical protein OsI_12404 [Oryza sativa Indi...   152   9e-35
ref|NP_001059582.1| Os07g0463100 [Oryza sativa Japonica Group] g...   152   2e-34
ref|XP_002992934.1| hypothetical protein SELMODRAFT_236641 [Sela...   151   3e-34
gb|EXB93550.1| DNA-directed RNA polymerases I, II, and III subun...   150   3e-34
ref|XP_002864142.1| hypothetical protein ARALYDRAFT_495261 [Arab...   150   3e-34
gb|EAZ39715.1| hypothetical protein OsJ_24153 [Oryza sativa Japo...   150   3e-34
ref|XP_004493541.1| PREDICTED: DNA-directed RNA polymerases I, I...   150   5e-34
ref|XP_002282723.1| PREDICTED: DNA-directed RNA polymerases I, I...   150   5e-34
ref|NP_001050570.1| Os03g0586600 [Oryza sativa Japonica Group] g...   150   5e-34
ref|XP_004982505.1| PREDICTED: DNA-directed RNA polymerases I, I...   150   6e-34
gb|EOY23106.1| DNA-directed RNA polymerase II subunit protein is...   149   8e-34
ref|XP_003625191.1| DNA-directed RNA polymerases I, II, and III ...   149   8e-34
ref|NP_200007.1| RNA polymerase Rpb6 [Arabidopsis thaliana] gi|7...   149   1e-33
gb|AFK33543.1| unknown [Lotus japonicus]                              149   1e-33
ref|XP_002885765.1| hypothetical protein ARALYDRAFT_899271 [Arab...   149   1e-33
ref|NP_001236044.1| uncharacterized protein LOC100305739 [Glycin...   149   1e-33

>ref|XP_002318240.2| hypothetical protein POPTR_0012s13610g [Populus trichocarpa]
           gi|550327061|gb|EEE96460.2| hypothetical protein
           POPTR_0012s13610g [Populus trichocarpa]
          Length = 183

 Score =  157 bits (398), Expect = 3e-36
 Identities = 87/151 (57%), Positives = 108/151 (71%), Gaps = 6/151 (3%)
 Frame = -3

Query: 695 VMETIEHEDAVTDIE---EDETREDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDTGKK 525
           + E+I  ++   D++   EDE  E   E G EE+ D  N   +KG    T+  +E   ++
Sbjct: 36  LQESIMADEDYNDVDMGYEDEPPEPEIEEGVEEDADNDNNEDDKGEPIETEDKEE---QE 92

Query: 524 LENETRKTDRYMTKYERARILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFS 345
                RKT ++MTKYERARILGTRALQISMNAPVMVELEGETD LEIA+KEL++ KIPF+
Sbjct: 93  PVERPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 152

Query: 344 IRRYLPDGSFEDWGVDELIVED---YQLGGN 261
           IRRYLPDGS+EDWGVDELIVED    Q+GG+
Sbjct: 153 IRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 183


>ref|XP_006395370.1| hypothetical protein EUTSA_v10005087mg [Eutrema salsugineum]
           gi|557092009|gb|ESQ32656.1| hypothetical protein
           EUTSA_v10005087mg [Eutrema salsugineum]
          Length = 144

 Score =  153 bits (386), Expect = 7e-35
 Identities = 86/144 (59%), Positives = 105/144 (72%), Gaps = 15/144 (10%)
 Frame = -3

Query: 647 DETREDVNEVGQEENNDGGNRASEKGTTQNT--KGNQEDTGKKLENET----------RK 504
           DE  +DV+++G E+  +   R  E+G   +   K N + TG+ +E E           R+
Sbjct: 3   DEDYQDVDDLGYED--EPTEREIEEGVEDDVEMKENDDITGEPIETEDKIEQEAVQRPRE 60

Query: 503 TDRYMTKYERARILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPD 324
           T ++MTKYERARILGTRALQISMNAPVMVELEGETD LEIA+KEL+Q KIPF+IRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 323 GSFEDWGVDELIVED---YQLGGN 261
           GSFEDWGVDELIVED    Q+GG+
Sbjct: 121 GSFEDWGVDELIVEDSWKRQVGGD 144


>ref|XP_002322450.1| DNA-directed RNA polymerase II family protein [Populus trichocarpa]
           gi|222869446|gb|EEF06577.1| DNA-directed RNA polymerase
           II family protein [Populus trichocarpa]
          Length = 143

 Score =  153 bits (386), Expect = 7e-35
 Identities = 83/144 (57%), Positives = 102/144 (70%), Gaps = 6/144 (4%)
 Frame = -3

Query: 674 EDAVTDIE---EDETREDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDTGKKLENETRK 504
           +D   D++   EDE  E   E G +E+ +  N   + G    T+  +E    +     RK
Sbjct: 3   DDEYNDVDMGYEDEPAEPEIEEGADEDAENNNNEDDTGEPIETEDKEEQAPVE---RPRK 59

Query: 503 TDRYMTKYERARILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPD 324
           T ++MTKYERARILGTRALQISMNAPVMVELEGETD LEIA+KEL++ KIPF+IRRYLPD
Sbjct: 60  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 119

Query: 323 GSFEDWGVDELIVED---YQLGGN 261
           GS+EDWGVDELIVED    Q+GG+
Sbjct: 120 GSYEDWGVDELIVEDSWKRQVGGD 143


>ref|XP_006421865.1| hypothetical protein CICLE_v10006171mg [Citrus clementina]
           gi|568874475|ref|XP_006490341.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 6A-like [Citrus
           sinensis] gi|557523738|gb|ESR35105.1| hypothetical
           protein CICLE_v10006171mg [Citrus clementina]
          Length = 143

 Score =  152 bits (385), Expect = 9e-35
 Identities = 84/133 (63%), Positives = 97/133 (72%), Gaps = 3/133 (2%)
 Frame = -3

Query: 650 EDETREDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDTGKKLENETRKTDRYMTKYERA 471
           EDE  E   E G EE+ +  N     G    T+  +E   K+     RKT +YMTKYERA
Sbjct: 14  EDEPPEPEIEEGAEEDAENINNDDINGEPIETEEKEEQEQKEA---ARKTSKYMTKYERA 70

Query: 470 RILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPDGSFEDWGVDEL 291
           RILGTRALQISMNAPVMVELEGETD LEIA+KEL++ KIPF+IRRYLPDGS+EDWGVDEL
Sbjct: 71  RILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDEL 130

Query: 290 IVED---YQLGGN 261
           IVED    Q+GG+
Sbjct: 131 IVEDSWKRQVGGD 143


>gb|EAY90802.1| hypothetical protein OsI_12404 [Oryza sativa Indica Group]
          Length = 143

 Score =  152 bits (385), Expect = 9e-35
 Identities = 84/132 (63%), Positives = 94/132 (71%), Gaps = 3/132 (2%)
 Frame = -3

Query: 650 EDETREDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDTGKKLENETRKTDRYMTKYERA 471
           EDE  E   E G EE  +  N   E G  +      ED  ++     RKT +YMTKYERA
Sbjct: 14  EDEPPEPEIEEGAEEEPENNN---EDGPDEVVGAEAEDKEQEKTQRPRKTSKYMTKYERA 70

Query: 470 RILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPDGSFEDWGVDEL 291
           RILGTRALQISMNAPVMVELEGETD LEIA+KEL+  KIPF+IRRYLPDGS+EDWGVDEL
Sbjct: 71  RILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYEDWGVDEL 130

Query: 290 IVED---YQLGG 264
           IVED    Q+GG
Sbjct: 131 IVEDSWKRQVGG 142


>ref|NP_001059582.1| Os07g0463100 [Oryza sativa Japonica Group]
           gi|22093730|dbj|BAC07023.1| putative DNA-directed RNA
           polymerase Iia [Oryza sativa Japonica Group]
           gi|113611118|dbj|BAF21496.1| Os07g0463100 [Oryza sativa
           Japonica Group] gi|125558240|gb|EAZ03776.1| hypothetical
           protein OsI_25904 [Oryza sativa Indica Group]
           gi|215768441|dbj|BAH00670.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 142

 Score =  152 bits (383), Expect = 2e-34
 Identities = 85/143 (59%), Positives = 100/143 (69%), Gaps = 6/143 (4%)
 Frame = -3

Query: 674 EDAVTDIE---EDETREDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDTGKKLENETRK 504
           ED   D++   EDE  E   E G EE  +  N    +    +  G ++D  ++     RK
Sbjct: 3   EDDYNDMDMGYEDEPPEPEIEEGAEEEPENNN----EDAVDDVVGAEDDKEQEKTARPRK 58

Query: 503 TDRYMTKYERARILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPD 324
           T +YMTKYERARILGTRALQISMNAPVMVELEGETD LEIA+KEL+  KIPF+IRRYLPD
Sbjct: 59  TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPD 118

Query: 323 GSFEDWGVDELIVED---YQLGG 264
           GS+EDWGVDELIVED    Q+GG
Sbjct: 119 GSYEDWGVDELIVEDSWKRQVGG 141


>ref|XP_002992934.1| hypothetical protein SELMODRAFT_236641 [Selaginella moellendorffii]
           gi|300139279|gb|EFJ06023.1| hypothetical protein
           SELMODRAFT_236641 [Selaginella moellendorffii]
          Length = 141

 Score =  151 bits (381), Expect = 3e-34
 Identities = 78/123 (63%), Positives = 92/123 (74%)
 Frame = -3

Query: 647 DETREDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDTGKKLENETRKTDRYMTKYERAR 468
           DE  E   EV ++ENN+        G  Q  +  Q      + ++ RKT +YMTKYERAR
Sbjct: 17  DEPVEPEEEVEEQENNEEAPEFGGDGEFQEAESEQ------VSDKPRKTTKYMTKYERAR 70

Query: 467 ILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPDGSFEDWGVDELI 288
           +LGTRALQISMNAPVMVELEGETD LEIA+KEL++ KIPF+IRRYLPDGS+EDWGVDELI
Sbjct: 71  VLGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 130

Query: 287 VED 279
           VED
Sbjct: 131 VED 133


>gb|EXB93550.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2 [Morus
           notabilis]
          Length = 143

 Score =  150 bits (380), Expect = 3e-34
 Identities = 87/148 (58%), Positives = 103/148 (69%), Gaps = 10/148 (6%)
 Frame = -3

Query: 674 EDAVTDIE---EDETREDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDTGKKLENET-- 510
           +D  T+++   EDE  E   E G EE+ D  N         +T G   +   K + E   
Sbjct: 3   DDDYTEMDMGYEDEPPEPEIEEGAEEDVDNNNN-------DDTGGEPIEAEDKADEEPVE 55

Query: 509 --RKTDRYMTKYERARILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRR 336
             RKT +YMTKYERARILGTRALQISMNAPVMVELEGETD LEIA+KEL++ KIPF+IRR
Sbjct: 56  HPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 115

Query: 335 YLPDGSFEDWGVDELIVED---YQLGGN 261
           YLPDGS+EDWGVDELIVED    Q+GG+
Sbjct: 116 YLPDGSYEDWGVDELIVEDSWKRQVGGD 143


>ref|XP_002864142.1| hypothetical protein ARALYDRAFT_495261 [Arabidopsis lyrata subsp.
           lyrata] gi|297309977|gb|EFH40401.1| hypothetical protein
           ARALYDRAFT_495261 [Arabidopsis lyrata subsp. lyrata]
          Length = 144

 Score =  150 bits (380), Expect = 3e-34
 Identities = 83/142 (58%), Positives = 101/142 (71%), Gaps = 13/142 (9%)
 Frame = -3

Query: 647 DETREDVNEVGQEEN------NDGGNRASEKGTTQNTKGNQEDTGKKLENET----RKTD 498
           DE   +V+++G E+        +G    +E     +  G   +T  K+E E     RKT 
Sbjct: 3   DEDYNEVDDLGYEDEPVEPEIEEGVEEDAEMKENDDVNGEPLETEDKVETEPVQRPRKTS 62

Query: 497 RYMTKYERARILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPDGS 318
           ++MTKYERARILGTRALQISMNAPVMVELEGETD LEIA+KEL+Q KIPF+IRRYLPDGS
Sbjct: 63  KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGS 122

Query: 317 FEDWGVDELIVED---YQLGGN 261
           FE+WGVDELIVED    Q+GG+
Sbjct: 123 FEEWGVDELIVEDSWKRQVGGD 144


>gb|EAZ39715.1| hypothetical protein OsJ_24153 [Oryza sativa Japonica Group]
          Length = 177

 Score =  150 bits (380), Expect = 3e-34
 Identities = 82/132 (62%), Positives = 95/132 (71%), Gaps = 3/132 (2%)
 Frame = -3

Query: 650 EDETREDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDTGKKLENETRKTDRYMTKYERA 471
           EDE  E   E G EE  +  N    +    +  G ++D  ++     RKT +YMTKYERA
Sbjct: 49  EDEPPEPEIEEGAEEEPENNN----EDAVDDVVGAEDDKEQEKTARPRKTSKYMTKYERA 104

Query: 470 RILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPDGSFEDWGVDEL 291
           RILGTRALQISMNAPVMVELEGETD LEIA+KEL+  KIPF+IRRYLPDGS+EDWGVDEL
Sbjct: 105 RILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYEDWGVDEL 164

Query: 290 IVED---YQLGG 264
           IVED    Q+GG
Sbjct: 165 IVEDSWKRQVGG 176


>ref|XP_004493541.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC2-like [Cicer arietinum]
          Length = 145

 Score =  150 bits (379), Expect = 5e-34
 Identities = 82/145 (56%), Positives = 101/145 (69%), Gaps = 5/145 (3%)
 Frame = -3

Query: 680 EHEDAVTDIEEDETREDVNEVGQEEN--NDGGNRASEKGTTQNTKGNQEDTGKKLENETR 507
           ++ED     EE+    ++ E  +EE+  N   +   E    +      E  G++     R
Sbjct: 5   DYEDIDMGYEEEPPEPEIEEGAEEEDLENKNDDMTGEGEPIETEDKEDEQPGER----PR 60

Query: 506 KTDRYMTKYERARILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLP 327
           KT +YMTKYERARILGTRALQISMNAPVMVELEGETD LEIA+KEL++ KIPF+IRRYLP
Sbjct: 61  KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 120

Query: 326 DGSFEDWGVDELIVED---YQLGGN 261
           DGS+EDWGVDELIVED    Q+GG+
Sbjct: 121 DGSYEDWGVDELIVEDSWKRQVGGD 145


>ref|XP_002282723.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC2 [Vitis vinifera] gi|302143496|emb|CBI22057.3|
           unnamed protein product [Vitis vinifera]
          Length = 141

 Score =  150 bits (379), Expect = 5e-34
 Identities = 82/133 (61%), Positives = 95/133 (71%), Gaps = 3/133 (2%)
 Frame = -3

Query: 650 EDETREDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDTGKKLENETRKTDRYMTKYERA 471
           EDE  E   E G EE+ D  N        +  +  Q    +     +RKT +YMTKYERA
Sbjct: 14  EDEPPEPEIEEGAEEDADNNNNEDIPDAIETAEKEQVPVER-----SRKTSKYMTKYERA 68

Query: 470 RILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPDGSFEDWGVDEL 291
           RILGTRALQISMNAPVMVELEGETD LEIA+KEL++ KIPF+IRRYLPDGS+EDWGVDEL
Sbjct: 69  RILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDEL 128

Query: 290 IVED---YQLGGN 261
           IVED    Q+GG+
Sbjct: 129 IVEDSWKRQVGGD 141


>ref|NP_001050570.1| Os03g0586600 [Oryza sativa Japonica Group]
           gi|50399946|gb|AAT76334.1| putative DNA-directed RNA
           polymerase II subunit [Oryza sativa Japonica Group]
           gi|108709558|gb|ABF97353.1| DNA-directed RNA polymerases
           I, II, and III 14.4 kDa polypeptide, putative, expressed
           [Oryza sativa Japonica Group]
           gi|113549041|dbj|BAF12484.1| Os03g0586600 [Oryza sativa
           Japonica Group] gi|125586969|gb|EAZ27633.1| hypothetical
           protein OsJ_11577 [Oryza sativa Japonica Group]
           gi|215678566|dbj|BAG92221.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 142

 Score =  150 bits (379), Expect = 5e-34
 Identities = 83/132 (62%), Positives = 94/132 (71%), Gaps = 3/132 (2%)
 Frame = -3

Query: 650 EDETREDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDTGKKLENETRKTDRYMTKYERA 471
           EDE  E   E G EE  +     +E G  +      ED  ++     RKT +YMTKYERA
Sbjct: 14  EDEPPEPEIEEGAEEEPEN----NEDGPDEVVGAEAEDKEQEKTQRPRKTSKYMTKYERA 69

Query: 470 RILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPDGSFEDWGVDEL 291
           RILGTRALQISMNAPVMVELEGETD LEIA+KEL+  KIPF+IRRYLPDGS+EDWGVDEL
Sbjct: 70  RILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYEDWGVDEL 129

Query: 290 IVED---YQLGG 264
           IVED    Q+GG
Sbjct: 130 IVEDSWKRQVGG 141


>ref|XP_004982505.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC2-like [Setaria italica]
          Length = 143

 Score =  150 bits (378), Expect = 6e-34
 Identities = 83/140 (59%), Positives = 99/140 (70%), Gaps = 15/140 (10%)
 Frame = -3

Query: 635 EDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDT--------GKKLENET----RKTDRY 492
           +D NE+     ++      E+G  +  + N EDT        G++ E E     RKT +Y
Sbjct: 4   DDYNEMDMGYEDEPPEPEIEEGAEEELENNNEDTPDDVVGAEGEEKEQEKAKSERKTSKY 63

Query: 491 MTKYERARILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPDGSFE 312
           MTKYERARILGTRALQISMNAPVMVELEGETD LEIA+KEL+  KIPF+IRRYLPDGS+E
Sbjct: 64  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYE 123

Query: 311 DWGVDELIVED---YQLGGN 261
           DWGVDELIVED    Q+GG+
Sbjct: 124 DWGVDELIVEDSWKRQVGGD 143


>gb|EOY23106.1| DNA-directed RNA polymerase II subunit protein isoform 1 [Theobroma
           cacao]
          Length = 143

 Score =  149 bits (377), Expect = 8e-34
 Identities = 82/133 (61%), Positives = 97/133 (72%), Gaps = 3/133 (2%)
 Frame = -3

Query: 650 EDETREDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDTGKKLENETRKTDRYMTKYERA 471
           EDE  E   E G EE+ +  N          T+  +E   K   ++ RKT +YMTKYERA
Sbjct: 14  EDEPPEPEIEEGAEEDLENNNNDDVPVEPIETEEKEEHDSK---DKIRKTSKYMTKYERA 70

Query: 470 RILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPDGSFEDWGVDEL 291
           RILGTRALQISMNAPVMVELEGE+D LEIA+KEL++ KIPF+IRRYLPDGS+EDWGVDEL
Sbjct: 71  RILGTRALQISMNAPVMVELEGESDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDEL 130

Query: 290 IVED---YQLGGN 261
           IVED    Q+GG+
Sbjct: 131 IVEDSWKRQVGGD 143


>ref|XP_003625191.1| DNA-directed RNA polymerases I, II, and III subunit RPABC2
           [Medicago truncatula] gi|124360124|gb|ABN08140.1|
           DNA-directed RNA polymerase, 14 to 18 kDa subunit
           [Medicago truncatula] gi|355500206|gb|AES81409.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC2 [Medicago truncatula] gi|388508874|gb|AFK42503.1|
           unknown [Medicago truncatula]
           gi|388517849|gb|AFK46986.1| unknown [Medicago
           truncatula]
          Length = 145

 Score =  149 bits (377), Expect = 8e-34
 Identities = 82/147 (55%), Positives = 103/147 (70%), Gaps = 7/147 (4%)
 Frame = -3

Query: 680 EHEDAVTDIEEDETREDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDTGKKLE----NE 513
           ++ED     EE+    ++ E  +EE+ D       K    + +G   +T +K +      
Sbjct: 5   DYEDIDMGYEEEPPEPEIEEGAEEEDPDN------KNDDLDAEGEPIETEEKEDAAPVER 58

Query: 512 TRKTDRYMTKYERARILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRY 333
            R+T +YMTKYERARILGTRALQISMNAPVMVELEGETD LEIA+KEL++ KIPF+IRRY
Sbjct: 59  PRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRY 118

Query: 332 LPDGSFEDWGVDELIVED---YQLGGN 261
           LPDGS+EDWGVDELIVED    Q+GG+
Sbjct: 119 LPDGSYEDWGVDELIVEDSWKRQVGGD 145


>ref|NP_200007.1| RNA polymerase Rpb6 [Arabidopsis thaliana]
           gi|75262545|sp|Q9FJ98.1|RPD6A_ARATH RecName:
           Full=DNA-directed RNA polymerases II, IV and V subunit
           6A; AltName: Full=RNA polymerase Rpb6
           gi|13878077|gb|AAK44116.1|AF370301_1 putative
           DNA-directed RNA polymerase II subunit [Arabidopsis
           thaliana] gi|10177729|dbj|BAB11042.1| DNA-directed RNA
           polymerase II subunit-like protein [Arabidopsis
           thaliana] gi|17104747|gb|AAL34262.1| putative
           DNA-directed RNA polymerase II subunit [Arabidopsis
           thaliana] gi|21595784|gb|AAM66131.1| DNA-directed RNA
           polymerase II subunit-like protein [Arabidopsis
           thaliana] gi|332008765|gb|AED96148.1| RNA polymerase
           Rpb6 [Arabidopsis thaliana]
          Length = 144

 Score =  149 bits (376), Expect = 1e-33
 Identities = 83/142 (58%), Positives = 99/142 (69%), Gaps = 13/142 (9%)
 Frame = -3

Query: 647 DETREDVNEVGQEEN------NDGGNRASEKGTTQNTKGNQEDTGKKLENET----RKTD 498
           DE   DV+++G E+        +G     E     +  G   +   K+E E     RKT 
Sbjct: 3   DEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRKTS 62

Query: 497 RYMTKYERARILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPDGS 318
           ++MTKYERARILGTRALQISMNAPVMVELEGETD LEIA+KEL+Q KIPF+IRRYLPDGS
Sbjct: 63  KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGS 122

Query: 317 FEDWGVDELIVED---YQLGGN 261
           FE+WGVDELIVED    Q+GG+
Sbjct: 123 FEEWGVDELIVEDSWKRQVGGD 144


>gb|AFK33543.1| unknown [Lotus japonicus]
          Length = 144

 Score =  149 bits (376), Expect = 1e-33
 Identities = 85/137 (62%), Positives = 97/137 (70%), Gaps = 7/137 (5%)
 Frame = -3

Query: 650 EDETREDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDTGKKLE----NETRKTDRYMTK 483
           EDE  E   E G EE+ +  N   E G      G   +T +K E       RKT +YMTK
Sbjct: 14  EDEPVEPEIEEGAEEDLENKNEEEENG------GEPLETEEKEEVQPVQRPRKTSKYMTK 67

Query: 482 YERARILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPDGSFEDWG 303
           YERARILGTRALQISMNAPVMVEL GETD LEIA+KEL++ KIPF+IRRYLPDGS+EDWG
Sbjct: 68  YERARILGTRALQISMNAPVMVELAGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWG 127

Query: 302 VDELIVED---YQLGGN 261
           VDELIVED    Q+GG+
Sbjct: 128 VDELIVEDSWKRQVGGD 144


>ref|XP_002885765.1| hypothetical protein ARALYDRAFT_899271 [Arabidopsis lyrata subsp.
           lyrata] gi|297331605|gb|EFH62024.1| hypothetical protein
           ARALYDRAFT_899271 [Arabidopsis lyrata subsp. lyrata]
          Length = 144

 Score =  149 bits (376), Expect = 1e-33
 Identities = 82/142 (57%), Positives = 101/142 (71%), Gaps = 13/142 (9%)
 Frame = -3

Query: 647 DETREDVNEVGQEEN------NDGGNRASEKGTTQNTKGNQEDTGKKLENET----RKTD 498
           DE   +V+++G E+        +G    ++     +  G   +T  K+E E     RKT 
Sbjct: 3   DEDYNEVDDLGYEDEPVEPEIEEGVEEDADIKENDDVNGEPMETEDKVETEPVQRPRKTS 62

Query: 497 RYMTKYERARILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPDGS 318
           ++MTKYERARILGTRALQISMNAPVMVELEGETD LEIA+KEL+Q KIPF+IRRYLPDGS
Sbjct: 63  KFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGS 122

Query: 317 FEDWGVDELIVED---YQLGGN 261
           FE+WGVDELIVED    Q+GG+
Sbjct: 123 FEEWGVDELIVEDSWKRQVGGD 144


>ref|NP_001236044.1| uncharacterized protein LOC100305739 [Glycine max]
           gi|255626491|gb|ACU13590.1| unknown [Glycine max]
          Length = 142

 Score =  149 bits (376), Expect = 1e-33
 Identities = 84/133 (63%), Positives = 99/133 (74%), Gaps = 3/133 (2%)
 Frame = -3

Query: 650 EDETREDVNEVGQEENNDGGNRASEKGTTQNTKGNQEDTGKKLENETRKTDRYMTKYERA 471
           EDE  E   E G EE+ +  N     G + +T+  +E+   K     RKT +YMTKYERA
Sbjct: 14  EDEPPEPEIEEGAEEDVENKNDEIT-GESIDTEDKEEEQPVK---RPRKTSKYMTKYERA 69

Query: 470 RILGTRALQISMNAPVMVELEGETDSLEIALKELQQGKIPFSIRRYLPDGSFEDWGVDEL 291
           RILGTRALQISMNAPVMVELEGETD LEIA+KEL++ KIPF+IRRYLPDGS+EDWGVDEL
Sbjct: 70  RILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDEL 129

Query: 290 IVED---YQLGGN 261
           IVED    Q+GG+
Sbjct: 130 IVEDSWKRQVGGD 142