BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00010463
         (5130 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]             1625   0.0  
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...  1625   0.0  
gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative...  1535   0.0  
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...  1527   0.0  
gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus pe...  1525   0.0  
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...  1524   0.0  
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...  1522   0.0  
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...  1521   0.0  
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1504   0.0  
ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1417   0.0  
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...  1385   0.0  
gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative...  1375   0.0  
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...  1342   0.0  
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps...  1331   0.0  
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi...  1330   0.0  
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian...  1316   0.0  
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th...  1315   0.0  
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub...  1307   0.0  
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...  1281   0.0  
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub...  1277   0.0  

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score = 1625 bits (4209), Expect = 0.0
 Identities = 881/1559 (56%), Positives = 1070/1559 (68%), Gaps = 60/1559 (3%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGD YK VNEIGLP EIAQRITFEERV+ HN+++LQ LVD+KLCLTYRDG
Sbjct: 379  GSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHNMKHLQNLVDEKLCLTYRDG 438

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             STYSLREGSKGHTFLRPGQVVHRRIMDGD+VFINRPPTTHKHSLQALSVY+HDDHTVKI
Sbjct: 439  LSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKI 498

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPLICGPLSADFDGDC+HLFYPQSL A+AEVLELFSVEKQLLSSH+GN NLQLATDSLLS
Sbjct: 499  NPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLSSHSGNLNLQLATDSLLS 558

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            LK++F++YF  +  A+QL MFV   LPR A++KS  S  CWT LQ+LQTALP  FDC G+
Sbjct: 559  LKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWTALQILQTALPSYFDCIGE 618

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            R+   KS ++KV+++RDV QS+  +IVTSI   KGP EV+KFFD L PLLMENL+ EGFS
Sbjct: 619  RHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKFFDSLQPLLMENLFSEGFS 678

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            V LEDF IP    ++++ +++ +S LLY L+S  +E +QLQ EN+LR  K+P++NF+L S
Sbjct: 679  VSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAENHLRLTKVPVANFILNS 738

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTGT-YP 1258
            SA+G L+DSKSDSA++KVVQQIGFLG Q+S+KGKFY++ LV+ +A LF  KYP  G  YP
Sbjct: 739  SALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVEGMAYLFKSKYPFHGADYP 798

Query: 1259 SEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYD 1438
            S +FGL+RSC FHGLDPY+EMVHSIS+RE+IVRS+RGL+EPGTLFKNLMAILRDVVICYD
Sbjct: 799  SGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMAILRDVVICYD 858

Query: 1439 GTVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXXX 1618
            GTVRNVCSNSIIQFEYGV         F AGEPVGVLAATAMSNPAYKAVLD        
Sbjct: 859  GTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNSS 918

Query: 1619 WEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAEE 1798
            WE+MKEILLC V+FKND  DRRVILYLNDC CGRKYCRENAAY+VKN L+K SLK+ A E
Sbjct: 919  WELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKKASLKDTAVE 978

Query: 1799 LLIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSFRKKKKDG 1978
             +IEY   HAV  SSE  TGL+GH+HLN++LL+  N+SM +V  KCE+ INSFRKKK  G
Sbjct: 979  FMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEVCQKCEETINSFRKKKNVG 1038

Query: 1979 YLFKRILLAAXXXXXXXXXXXXXXXD--CLKFIWQDTSNYKLEEISHILVDTICPVLLGT 2152
              FK+I+L+                D  CL F WQ   +  LE+I HIL   ICPVLL T
Sbjct: 1039 PFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNLEQILHILAHKICPVLLQT 1098

Query: 2153 IIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVMDCC 2332
            IIKGD RV  V+IIWI+PDT TWIR+PCKSRKGELALD+++EK AVKQ GD WR+V+D C
Sbjct: 1099 IIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWRIVLDAC 1158

Query: 2333 LPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLANSM 2512
            LPV+ LIDT+RSIPYAIKQVQELLGISCAF+QAVQRLS SVTMV KGVLK+HL+LLANSM
Sbjct: 1159 LPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLILLANSM 1218

Query: 2513 TYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVASCAW 2692
            T +GNLIGFN GG KALSR+LN+QVPFTEATLF PRKCFE+A+EKCH D+LSS+VASC+W
Sbjct: 1219 TCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEKCHTDSLSSIVASCSW 1278

Query: 2693 GKQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEIDNLD 2872
            GK V VG+GS FD+L DT++I   Q  G+D+Y FLHLVRS   G+E DT+C+GAE+++L 
Sbjct: 1279 GKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGSYGKEPDTACLGAEVEDLI 1338

Query: 2873 LEDESIGNDMSPLRDS--EKPIFEDGMEFEDN-----QGELG-W-----EKDSSLTAKSS 3013
            LEDE++   MSP   S  EKP+FED  EF++       G  G W     ++ ++ T K S
Sbjct: 1339 LEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENHVPGSGGDWAVNQNKETTASTLKPS 1398

Query: 3014 A--GWG-------------EAIDKAANGGWDQAIDKASGGGWDQAIDKASGGGWDQS-VD 3145
            A   WG             E  + + + GWD   DK + G      DKA    + ++  D
Sbjct: 1399 AWSSWGTDKVTMKDTFSTREPDESSRSAGWD---DKGTWG-----TDKAQNTAFRRTHED 1450

Query: 3146 KSSSGGWDQTINRVQNVDAGPKVSDSAW---------PGWTNSDVGKESGFSKR------ 3280
               S G D+T       D  P+ + SAW          GW  +D GK      R      
Sbjct: 1451 SPRSSGRDETFR-----DGRPQFASSAWGKKIDEADKTGWNKND-GKPQMDKLRESYDWD 1504

Query: 3281 ---AEESPGVSDWGSEERXXXXXXXXXXXXXXXKVDFERESPLTAKSSGSWDLAADRARD 3451
               A+E    S +G                   + D   ESP+   +  SWD  A+   D
Sbjct: 1505 CKVAQEKTTQSTYGGISSTTGDWKKNELQMEVVQHD---ESPV---NEHSWD--ANLPED 1556

Query: 3452 TGAGKGLDSAWSSWANAEVGNEGGFSKRLQEDSPSFCEWVAKEPQXXXXXXXXXXXXXXX 3631
              A       W S    +       S   Q+  P+   W +                   
Sbjct: 1557 PLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSH-------------NVMK 1603

Query: 3632 VDSQRDSSSNAKSS----GTGDVADEKVENVWAKATSKNSGWSKWGSNAVNKNDDLPERA 3799
              S + +S++   S    G  DV ++   N    A   +   S  G    N+ + LP   
Sbjct: 1604 EQSNQPASTHGWDSPGAKGWNDVEEQSQWNQRGSAVKNDQSESSHGWGPSNEQNQLPSSQ 1663

Query: 3800 GVDSSNSGGDAVTLEIEEDKKSAITKSRDFPKDLQPQWG--ARKRFSDNGDSNGSPRGWG 3973
            G  S N+G                        + Q QWG  + K+    G      RGWG
Sbjct: 1664 GWGSPNAGA-------------------GHESETQSQWGQPSGKKSRPEGS-----RGWG 1699

Query: 3974 SSNNADWKNKRSRPPKPM----DNSGGTGLFTKTRQRLDLFTAEEQDILADVEPIIETVT 4141
             SNN +WKNK++RP KP     D+    G+FT TRQR+D+FT+EEQDIL DVEPI++++ 
Sbjct: 1700 -SNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIR 1758

Query: 4142 RIKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKDIKIGAGIDYIMISKHASFPDSRCFYV 4321
            RI +Q GYNDGDPLSADDQS+I+D V N+HPDK +K+G GIDY+M+S+H+SF +SRCFYV
Sbjct: 1759 RIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYV 1818

Query: 4322 VSSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAKYLRKSQSRPGWNRDRASTPDEGGTR 4498
            VS+DGHK+DFSYRK LENFIK KYPD AE F+ KY R+   R G NR+R+  P++GG R
Sbjct: 1819 VSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRR--PRAGGNRERSVIPEDGGNR 1875


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score = 1625 bits (4209), Expect = 0.0
 Identities = 881/1559 (56%), Positives = 1070/1559 (68%), Gaps = 60/1559 (3%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGD YK VNEIGLP EIAQRITFEERV+ HN+++LQ LVD+KLCLTYRDG
Sbjct: 319  GSGFSSRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHNMKHLQNLVDEKLCLTYRDG 378

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             STYSLREGSKGHTFLRPGQVVHRRIMDGD+VFINRPPTTHKHSLQALSVY+HDDHTVKI
Sbjct: 379  LSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKI 438

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPLICGPLSADFDGDC+HLFYPQSL A+AEVLELFSVEKQLLSSH+GN NLQLATDSLLS
Sbjct: 439  NPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLSSHSGNLNLQLATDSLLS 498

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            LK++F++YF  +  A+QL MFV   LPR A++KS  S  CWT LQ+LQTALP  FDC G+
Sbjct: 499  LKVLFERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWTALQILQTALPSYFDCIGE 558

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            R+   KS ++KV+++RDV QS+  +IVTSI   KGP EV+KFFD L PLLMENL+ EGFS
Sbjct: 559  RHWISKSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKFFDSLQPLLMENLFSEGFS 618

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            V LEDF IP    ++++ +++ +S LLY L+S  +E +QLQ EN+LR  K+P++NF+L S
Sbjct: 619  VSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAENHLRLTKVPVANFILNS 678

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTGT-YP 1258
            SA+G L+DSKSDSA++KVVQQIGFLG Q+S+KGKFY++ LV+ +A LF  KYP  G  YP
Sbjct: 679  SALGNLIDSKSDSAINKVVQQIGFLGQQLSEKGKFYSRTLVEGMAYLFKSKYPFHGADYP 738

Query: 1259 SEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYD 1438
            S +FGL+RSC FHGLDPY+EMVHSIS+RE+IVRS+RGL+EPGTLFKNLMAILRDVVICYD
Sbjct: 739  SGEFGLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMAILRDVVICYD 798

Query: 1439 GTVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXXX 1618
            GTVRNVCSNSIIQFEYGV         F AGEPVGVLAATAMSNPAYKAVLD        
Sbjct: 799  GTVRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNSS 858

Query: 1619 WEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAEE 1798
            WE+MKEILLC V+FKND  DRRVILYLNDC CGRKYCRENAAY+VKN L+K SLK+ A E
Sbjct: 859  WELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKKASLKDTAVE 918

Query: 1799 LLIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSFRKKKKDG 1978
             +IEY   HAV  SSE  TGL+GH+HLN++LL+  N+SM +V  KCE+ INSFRKKK  G
Sbjct: 919  FMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEVCQKCEETINSFRKKKNVG 978

Query: 1979 YLFKRILLAAXXXXXXXXXXXXXXXD--CLKFIWQDTSNYKLEEISHILVDTICPVLLGT 2152
              FK+I+L+                D  CL F WQ   +  LE+I HIL   ICPVLL T
Sbjct: 979  PFFKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGNRDDNLEQILHILAHKICPVLLQT 1038

Query: 2153 IIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVMDCC 2332
            IIKGD RV  V+IIWI+PDT TWIR+PCKSRKGELALD+++EK AVKQ GD WR+V+D C
Sbjct: 1039 IIKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWRIVLDAC 1098

Query: 2333 LPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLANSM 2512
            LPV+ LIDT+RSIPYAIKQVQELLGISCAF+QAVQRLS SVTMV KGVLK+HL+LLANSM
Sbjct: 1099 LPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLILLANSM 1158

Query: 2513 TYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVASCAW 2692
            T +GNLIGFN GG KALSR+LN+QVPFTEATLF PRKCFE+A+EKCH D+LSS+VASC+W
Sbjct: 1159 TCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEKCHTDSLSSIVASCSW 1218

Query: 2693 GKQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEIDNLD 2872
            GK V VG+GS FD+L DT++I   Q  G+D+Y FLHLVRS   G+E DT+C+GAE+++L 
Sbjct: 1219 GKHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFLHLVRSGSYGKEPDTACLGAEVEDLI 1278

Query: 2873 LEDESIGNDMSPLRDS--EKPIFEDGMEFEDN-----QGELG-W-----EKDSSLTAKSS 3013
            LEDE++   MSP   S  EKP+FED  EF++       G  G W     ++ ++ T K S
Sbjct: 1279 LEDENLELGMSPEHSSNFEKPVFEDSAEFQNTWENHVPGSGGDWAVNQNKETTASTLKPS 1338

Query: 3014 A--GWG-------------EAIDKAANGGWDQAIDKASGGGWDQAIDKASGGGWDQS-VD 3145
            A   WG             E  + + + GWD   DK + G      DKA    + ++  D
Sbjct: 1339 AWSSWGTDKVTMKDTFSTREPDESSRSAGWD---DKGTWG-----TDKAQNTAFRRTHED 1390

Query: 3146 KSSSGGWDQTINRVQNVDAGPKVSDSAW---------PGWTNSDVGKESGFSKR------ 3280
               S G D+T       D  P+ + SAW          GW  +D GK      R      
Sbjct: 1391 SPRSSGRDETFR-----DGRPQFASSAWGKKIDEADKTGWNKND-GKPQMDKLRESYDWD 1444

Query: 3281 ---AEESPGVSDWGSEERXXXXXXXXXXXXXXXKVDFERESPLTAKSSGSWDLAADRARD 3451
               A+E    S +G                   + D   ESP+   +  SWD  A+   D
Sbjct: 1445 CKVAQEKTTQSTYGGISSTTGDWKKNELQMEVVQHD---ESPV---NEHSWD--ANLPED 1496

Query: 3452 TGAGKGLDSAWSSWANAEVGNEGGFSKRLQEDSPSFCEWVAKEPQXXXXXXXXXXXXXXX 3631
              A       W S    +       S   Q+  P+   W +                   
Sbjct: 1497 PLAQATTSVGWDSSTGKDWTKRKLQSPSEQQRDPAIKSWSSSH-------------NVMK 1543

Query: 3632 VDSQRDSSSNAKSS----GTGDVADEKVENVWAKATSKNSGWSKWGSNAVNKNDDLPERA 3799
              S + +S++   S    G  DV ++   N    A   +   S  G    N+ + LP   
Sbjct: 1544 EQSNQPASTHGWDSPGAKGWNDVEEQSQWNQRGSAVKNDQSESSHGWGPSNEQNQLPSSQ 1603

Query: 3800 GVDSSNSGGDAVTLEIEEDKKSAITKSRDFPKDLQPQWG--ARKRFSDNGDSNGSPRGWG 3973
            G  S N+G                        + Q QWG  + K+    G      RGWG
Sbjct: 1604 GWGSPNAGA-------------------GHESETQSQWGQPSGKKSRPEGS-----RGWG 1639

Query: 3974 SSNNADWKNKRSRPPKPM----DNSGGTGLFTKTRQRLDLFTAEEQDILADVEPIIETVT 4141
             SNN +WKNK++RP KP     D+    G+FT TRQR+D+FT+EEQDIL DVEPI++++ 
Sbjct: 1640 -SNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVEPIMQSIR 1698

Query: 4142 RIKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKDIKIGAGIDYIMISKHASFPDSRCFYV 4321
            RI +Q GYNDGDPLSADDQS+I+D V N+HPDK +K+G GIDY+M+S+H+SF +SRCFYV
Sbjct: 1699 RIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFLESRCFYV 1758

Query: 4322 VSSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAKYLRKSQSRPGWNRDRASTPDEGGTR 4498
            VS+DGHK+DFSYRK LENFIK KYPD AE F+ KY R+   R G NR+R+  P++GG R
Sbjct: 1759 VSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRR--PRAGGNRERSVIPEDGGNR 1815


>gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
            [Theobroma cacao] gi|508727913|gb|EOY19810.1|
            DNA-directed RNA polymerase E subunit 1, putative isoform
            1 [Theobroma cacao]
          Length = 1788

 Score = 1535 bits (3973), Expect = 0.0
 Identities = 836/1535 (54%), Positives = 1038/1535 (67%), Gaps = 35/1535 (2%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSR VITGDPYK VNEIG+P EIAQRITFEERV+ HN+ YLQ LVD KLCLTYRDG
Sbjct: 320  GSGFSSRGVITGDPYKKVNEIGIPSEIAQRITFEERVNMHNMRYLQNLVDNKLCLTYRDG 379

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             STYSLREGSKGHTFLRPGQVVHRRIMDGD+VFINRPPTTHKHSLQALSVY+HDDHTVKI
Sbjct: 380  SSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKI 439

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPLICGPLSADFDGDCIHLFYPQSL+A+AEV ELFSVEKQLLSSH GN NLQLATDSLLS
Sbjct: 440  NPLICGPLSADFDGDCIHLFYPQSLAAKAEVFELFSVEKQLLSSHNGNLNLQLATDSLLS 499

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            L++M K   F +  A+QL+MF+ + LP+ A +K +    CWT LQ+LQTA P   DCSGD
Sbjct: 500  LRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGNSFGPCWTALQILQTAFPACLDCSGD 559

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            RYL  KS+++ V+FSRD+ QS+  ++VTSI F KGPKEV+ FFD L PLLMEN++ EGFS
Sbjct: 560  RYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKGPKEVLNFFDSLQPLLMENVFAEGFS 619

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            V LEDF + +  +++++  +Q +SPLLY L+ST +E V LQ+EN++R  K P++NF+L S
Sbjct: 620  VSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQMENHIRVAKAPVANFILNS 679

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTGT-YP 1258
            SA+G L+DSKSDS ++KVVQQIGFLG+Q+S+KGKFY+K LV+DVA  F   YPS G  YP
Sbjct: 680  SALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVEDVAYQFQSIYPSDGVDYP 739

Query: 1259 SEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYD 1438
            S +FGL++SC FHGLDPY+ MVHSIS+REVIVRS+RGL+EPGTLFKNLMAILRDVVICYD
Sbjct: 740  SAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICYD 799

Query: 1439 GTVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXXX 1618
            GTVRN+ SNSIIQF+YG+N       +F AGEPVGVLAATAMSNPAYKAVLD        
Sbjct: 800  GTVRNISSNSIIQFQYGLN--ARTKPQFPAGEPVGVLAATAMSNPAYKAVLDSTPSSNSS 857

Query: 1619 WEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAEE 1798
            WE+MKEILLC VS KND  DRRVILYL DC CGRKYC+ENAAY+VKNHLRK+ LK+ A E
Sbjct: 858  WELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAYLVKNHLRKVKLKDTAVE 917

Query: 1799 LLIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSFRKKKKDG 1978
            L+ EYK    V   SE + GL+GH+ LN+ +LK  NISM +V  KC++ I SFRKKKK  
Sbjct: 918  LIFEYKQQQTV---SESEAGLVGHILLNKAVLKELNISMQEVHMKCQETIISFRKKKKTA 974

Query: 1979 YLFKR--ILLAAXXXXXXXXXXXXXXXDCLKFIWQDTSNYKLEEISHILVDTICPVLLGT 2152
              FKR  +  +                 CL F  ++T +  L+     LVD I PVLL T
Sbjct: 975  DTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDHLDCTLQDLVDIIYPVLLET 1034

Query: 2153 IIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVMDCC 2332
            +IKGDPR+ + +IIW++PDT TWIRSP K++KGELALDV++EK AVKQ GD WR V+DCC
Sbjct: 1035 VIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVLEKSAVKQNGDAWRTVIDCC 1094

Query: 2333 LPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLANSM 2512
            LPVI+LIDT+RSIPYAIKQVQELLGISCAFEQAVQRLSTSV+MV +GVLK+HL+LLANSM
Sbjct: 1095 LPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSVSMVARGVLKEHLILLANSM 1154

Query: 2513 TYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVASCAW 2692
            T +GNLIGFN GG KALSRSLN+QVPF+EATLF PRKCFERAAEKCHVD+LSS+VASC+W
Sbjct: 1155 TCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFERAAEKCHVDSLSSIVASCSW 1214

Query: 2693 GKQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEIDNLD 2872
            GK VAVG+GS FD+L D +++  +Q  G+DVY+FLH++ SS +G  + T+C+G E+D+L 
Sbjct: 1215 GKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHML-SSASGPSSTTTCLGEEVDDLM 1273

Query: 2873 LEDESIGNDMSPLRDS--EKPIFEDGMEFEDN----QGELGWEKDSSLTAKSSAGWGEAI 3034
              D      +SP   +  +KP+FED  +FE++      E  WEK  SL   SS     A 
Sbjct: 1274 DVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQPAESSWEKGVSLDKVSSWNVSSAW 1333

Query: 3035 DKAANGGWDQAIDKASGGGWDQAIDKASGGGWDQSVDKSSSGGWDQTINRVQNVDAG--P 3208
            +K A  G     DK +                  +  +S    W  + ++ Q+  A    
Sbjct: 1334 NKKAEDG-----DKFA-------------AALTSTTKQSDWCDWGTSKSKTQDAAAAATS 1375

Query: 3209 KVSDSAWPGWTNSDVGKESGFSKRAEESPGVSDWGSEERXXXXXXXXXXXXXXXKVDFER 3388
                + W  W         G SK   +    +  G+ E+               +V    
Sbjct: 1376 TTKKTEWCDW---------GTSKSKTQEVAATVTGTAEQ--NEWCDWRTSKSKIQVVAAA 1424

Query: 3389 ESPLTAKSS-GSWDLAADRARDTGAG--KGLDSAWSSWANAEVGNEGGFSKRLQEDSPSF 3559
             +  T +S  G W  +  + +D  A     +++ W  W        G    + Q+ SP  
Sbjct: 1425 VTSTTKQSEWGDWGTSKSKTQDVAAAVTGTMETEWGDW--------GKGKSKTQDVSPKV 1476

Query: 3560 CEWVAKEPQXXXXXXXXXXXXXXXVDSQRDSSSNAKSSGT--GDVADEKVENVWAKATSK 3733
                  E                    ++   SN   +GT  G +  E  +       + 
Sbjct: 1477 DGTCVNEQTKLSDWGLKKNDTQDVSMEEKTFKSNGADTGTSWGTMGKESEK----PDAND 1532

Query: 3734 NSGWSKWGSNAVNKNDDLPERAGVDSSNSGG---------DAVTLEIEEDKKSAITKSRD 3886
               WS WG+      D +P +   DSS S G               ++E  + A +   D
Sbjct: 1533 ALPWSGWGT-----QDVIPTKTLDDSSKSSGWEQQKSPECSQGWGSLDESNQPASSNGWD 1587

Query: 3887 FPKDL-------QPQWGARKRFSDNGDSNGSPRGWGSSNNADWKNKRSRPPKPM-DNSGG 4042
             P  L       Q QW         G S GS R W S  +A  KN   +  + M D+S  
Sbjct: 1588 TPNGLGSTQSEKQHQW---------GQSRGS-RRWAS--DASKKNHPVKSARVMNDDSSM 1635

Query: 4043 TGLFTKTRQRLDLFTAEEQDILADVEPIIETVTRIKNQTGYNDGDPLSADDQSFIVDNVL 4222
              ++T TRQRLD+FT+EEQDIL+DVEP+++++ +I +Q+GYNDGDPLSA DQSFI++NV 
Sbjct: 1636 AAMYTATRQRLDMFTSEEQDILSDVEPLMQSIRKIMHQSGYNDGDPLSALDQSFILENVF 1695

Query: 4223 NHHPDKDIKIGAGIDYIMISKHASFPDSRCFYVVSSDGHKQDFSYRKSLENFIKGKYPDK 4402
             HHPDK IK+GAG+DY+M+SKH++FPDSRCFYVVS+DG KQDFSYRK L+NFIKGKYPD 
Sbjct: 1696 THHPDKAIKMGAGVDYVMVSKHSNFPDSRCFYVVSTDGRKQDFSYRKCLDNFIKGKYPDM 1755

Query: 4403 AEAFVAKYLRKSQSRPGWNRDRASTPD--EGGTRR 4501
            A+ F+AKY RK   R G  R+R+  P+  EG  R+
Sbjct: 1756 ADVFIAKYFRK--PRFGGFRERSVAPENTEGENRK 1788


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score = 1527 bits (3954), Expect = 0.0
 Identities = 835/1609 (51%), Positives = 1053/1609 (65%), Gaps = 115/1609 (7%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGD Y  VN++G+P EIAQRITFEERVS HN+ YLQ+LVD KLCLTY+DG
Sbjct: 325  GSGFSSRSVITGDAYTLVNQVGIPYEIAQRITFEERVSVHNMRYLQELVDNKLCLTYKDG 384

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             STYSLREGSKGHTFLRPGQVVHRRIMDGD+VFINRPPTTHKHSLQALSVY+HDDH VKI
Sbjct: 385  SSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHAVKI 444

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPLICGPLSADFDGDC+HLFYPQSL+A+AEVLELFSVEKQLLSSH+GN NLQL TDSLLS
Sbjct: 445  NPLICGPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTTDSLLS 504

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            LK+MFK  F G+  A+QLAMF+   LP+ A++K +     WT  Q+LQ ALP  F+CSG+
Sbjct: 505  LKMMFKACFLGKSAAQQLAMFISPYLPQPALLKVNCFFPHWTAHQILQMALPACFNCSGE 564

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            R+L   S  +KV+F+RDV  S+  +I+ S+ F KG   V+KFF+ L P+LMENL+ EGFS
Sbjct: 565  RFLIINSNFLKVDFNRDVVASVINEILISMFFEKGSGAVLKFFNSLQPMLMENLFSEGFS 624

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            V LEDF I +   + +  S + +SPLL  L+ST +E V+LQ+EN++R VK P+  F+L S
Sbjct: 625  VSLEDFSISRAVKQRIPESFKAISPLLCNLRSTFNELVELQVENHIRDVKQPVREFILTS 684

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPST-GTYP 1258
            SA+G L+DSKSD+A++KVVQQIGFLG+Q+SD+GK Y+K LV+D+A  F  KYP+    YP
Sbjct: 685  SALGYLIDSKSDAAVTKVVQQIGFLGLQVSDRGKLYSKTLVEDLASHFLSKYPANLFDYP 744

Query: 1259 SEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYD 1438
            S Q+GL+++  FHGLD Y+EM HSIS+REVIVRS+RGL+EPGTLFKNLMAILRDVVICYD
Sbjct: 745  SAQYGLIQNSFFHGLDAYEEMAHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICYD 804

Query: 1439 GTVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXXX 1618
            GTVRNV SNSIIQFEYGV  G    S F AGEPVGVLAATAMSNPAYKAVLD        
Sbjct: 805  GTVRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVGVLAATAMSNPAYKAVLDSTPSSNCS 864

Query: 1619 WEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAEE 1798
            W+MMKEILLC V FKND +DRRVILYLNDCGCGR YC+E AAY+VKNHL K+SLK+ A+ 
Sbjct: 865  WDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNYCQERAAYLVKNHLEKVSLKDIAKC 924

Query: 1799 LLIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSFRKKKKDG 1978
             +IEYK +  + ES   D GL+GH+HL++  L+  NI+   +L KC++ +N+FRKKKK G
Sbjct: 925  FMIEYK-SQQIPESFGSDAGLVGHVHLDKRKLQDLNITAQVILEKCQETVNTFRKKKKVG 983

Query: 1979 YLFKRILLAAXXXXXXXXXXXXXXXDCLKFIWQDTSNYKLEEISHILVDTICPVLLGTII 2158
             LFK+ +L                  CL F WQ   +  LE  S+IL D ICPVLL TII
Sbjct: 984  NLFKKTILLVSESCSFQQCIDESP--CLMFFWQGADDVHLERTSNILADMICPVLLETII 1041

Query: 2159 KGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVMDCCLP 2338
            KGD R+S  +IIW  P+T TWIR+P +++KGELALD+++EK  VK++GD WR+V+D CLP
Sbjct: 1042 KGDHRISCANIIWATPETNTWIRNPSRTQKGELALDIVLEKSVVKKSGDAWRIVLDSCLP 1101

Query: 2339 VIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLANSMTY 2518
            V+ LI+T RSIPYAIKQVQELLG+SCAF+ AVQRLS SVTMV KGVLK+HL+LL NSMT 
Sbjct: 1102 VLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQRLSKSVTMVAKGVLKEHLILLGNSMTC 1161

Query: 2519 SGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVASCAWGK 2698
            +G+LIGF  GG K LSRSL++QVPFTEATLF PRKCFE+AAEKCH D+LSS+VASCAWGK
Sbjct: 1162 AGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFEKAAEKCHTDSLSSIVASCAWGK 1221

Query: 2699 QVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEIDNLDLE 2878
             V VG+GS FD+L DT++  LN    +DVY FL++VRS+  GEE+ T+C+GAE+D+L LE
Sbjct: 1222 HVTVGTGSHFDVLWDTKEACLNPEGSMDVYSFLNMVRSTAGGEESVTACLGAEVDDLMLE 1281

Query: 2879 DESIGNDMSPLRDSEKPIFEDGMEFEDNQG----ELGWEKDSSLTAKSSAGWGEAIDKAA 3046
            DE           S+KP FED  EF+D  G    E  WEK SSL  +S +     +DK  
Sbjct: 1282 DEDWNLSPEHNSSSDKPTFEDSAEFQDFLGNQPAESNWEKISSLKDRSRSSGNWDVDK-- 1339

Query: 3047 NGGWDQAIDKASGGGWDQAIDKASGGGWDQSVDKSSSGGWDQTINRVQNVDAGPKVSDSA 3226
            N G  +    + G    +A D AS G WD +  ++++  W+   N  Q+         ++
Sbjct: 1340 NDGAVKEKPWSLGMNTAEANDVASSG-WDTAAARTTNNSWNSENNVAQS---------NS 1389

Query: 3227 WPGWTNSDVGKESGFSKRAEESPGVSD-------WGSEERXXXXXXXXXXXXXXXKV--- 3376
            + GW        +GF+ + +E P  S+       WG ++R               KV   
Sbjct: 1390 FSGWATKKPEPHNGFATKVQEEPTTSNDWDAGAAWGRKDRDNKFAETNASKSWWGKVTDG 1449

Query: 3377 DFERESPLTAKSSGSWDLAADRARDTGAGKGLDSAWSSWANAEVGNE--GGFSKRLQEDS 3550
            D   ++    K     D+      D  +     S W+S    E   E  G  SK      
Sbjct: 1450 DESGQNKSKNKRPEDQDVGTHGWDDKMSQDQSISGWASKTTQEATTESLGWDSKGNSNPG 1509

Query: 3551 PSFCEWVAKEPQXXXXXXXXXXXXXXXVDSQRDSSS-------------------NAKS- 3670
             + C W A                     +Q D++S                   + KS 
Sbjct: 1510 DAACGWKAASTWGAENTDGDKLWGKEVSSNQADTASGWGKPKSPEISLGWGSTKESVKSD 1569

Query: 3671 -----SGTGDVADEKVENV-----------WAKATSKN-----SGWSK------------ 3751
                 S +G   D+K EN            W    + N     SGW K            
Sbjct: 1570 RGWGVSSSGGGRDKKTENQSLAGQGKESGGWGNKVTSNQADTASGWGKPKSSENSQGWGL 1629

Query: 3752 ----------WG-----------SNAVNKNDDLPER---AGVDSSNSGGDAVTLE-IEED 3856
                      WG           +N  N+N  L E+   +G D+  S     T     + 
Sbjct: 1630 SKESGKEVHEWGVPNSAGGNGSETNNNNENQSLVEQGKESGWDNKASSNQEGTASGWGKP 1689

Query: 3857 KKSAITKSRDFPKD--------------------LQPQWGARKRFSDNGDSNGSPRGWGS 3976
            K  A+++    P++                       QWG + R        GS RGWGS
Sbjct: 1690 KSPALSEGWGSPREPVKAVHGWGVPNSGGGNGSGRDQQWGQQSREFKKDRFEGS-RGWGS 1748

Query: 3977 SNNADWKNKRSRPPKPMDNSGGTGLFTKTRQRLDLFTAEEQDILADVEPIIETVTRIKNQ 4156
             NN DWKNKR+RP KP ++   +G+FT TRQRLD+FT++EQDIL+D+EP++ ++ RI +Q
Sbjct: 1749 -NNGDWKNKRNRPSKPHEDLNASGIFTTTRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQ 1807

Query: 4157 TGYNDGDPLSADDQSFIVDNVLNHHPDKDIKIGAGIDYIMISKHASFPDSRCFYVVSSDG 4336
            TGYNDGDPLSADDQS+++DNV ++HPDK +K+GAGID++ +S+H++F +SRCFY+VS+DG
Sbjct: 1808 TGYNDGDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQESRCFYIVSTDG 1867

Query: 4337 HKQDFSYRKSLENFIKGKYPDKAEAFVAKYLRKSQSRPGWNRDRASTPD 4483
             KQDFSYRK LENFIKGKYPD A+ F+AKY     +R G NR R   P+
Sbjct: 1868 CKQDFSYRKCLENFIKGKYPDLADEFIAKYF----ARRG-NRQRTPAPE 1911


>gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score = 1525 bits (3949), Expect = 0.0
 Identities = 825/1574 (52%), Positives = 1049/1574 (66%), Gaps = 82/1574 (5%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGD ++ VNE+G+P EIAQRITFEE+V+ HNI YLQ+LVD KLCLTY+DG
Sbjct: 322  GSGFSSRSVITGDAFRRVNEVGIPYEIAQRITFEEKVNDHNIRYLQELVDSKLCLTYKDG 381

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             STYSLREGSKGHTFLRPGQVVHRRIMDGD+VF+NRPPTTHKHSLQAL VY+HDDH VKI
Sbjct: 382  SSTYSLREGSKGHTFLRPGQVVHRRIMDGDLVFVNRPPTTHKHSLQALQVYVHDDHVVKI 441

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPLICGPLSADFDGDCIHLFYPQSL+A+AEVLELFSVEKQLLSSH+G  NLQLA D+LLS
Sbjct: 442  NPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHSGKPNLQLAADALLS 501

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            LK+MFKKYF  +  A+QLAMF  + LPR A++K++ + + WT  Q+LQTALP  FDCSGD
Sbjct: 502  LKMMFKKYFLDKAAAQQLAMFASSSLPRPALLKANSAHSYWTAFQILQTALPAHFDCSGD 561

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
             YL  KSE++ ++FS     ++  DI TS+ F KG ++V+KFFD L PLLMENL+ EGFS
Sbjct: 562  NYLVNKSEILNIDFSTSSVAAVMNDIATSVFFEKGGEDVLKFFDSLQPLLMENLFSEGFS 621

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            V LEDFY+ + +++D++ ++Q  S LLY L+ST +E V+ QL+N +R VK+P+S+F+L+S
Sbjct: 622  VGLEDFYMSRTSIQDIQKNIQDSSDLLYHLRSTYNEFVEFQLQNRIRSVKVPVSHFILES 681

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTGTYPS 1261
            SA+G L+DSKSDSA++K+VQQIGFLG+Q+SDKG+FY+K LV+DVA L H KYPS   YPS
Sbjct: 682  SALGDLIDSKSDSAINKIVQQIGFLGLQLSDKGRFYSKTLVEDVASLCHSKYPSDIDYPS 741

Query: 1262 EQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYDG 1441
             ++GLV+SC FHGLDPY+ +VHSI++REVIVRS+RGL+EPGTLFKNLMAILRDVVICYDG
Sbjct: 742  AEYGLVQSCFFHGLDPYEAIVHSIATREVIVRSSRGLSEPGTLFKNLMAILRDVVICYDG 801

Query: 1442 TVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXXXW 1621
            TVRNVCSNSIIQFEYGVN G      F AGEPVGVLAATAMSNPAYKAVLD        W
Sbjct: 802  TVRNVCSNSIIQFEYGVNIGSRPQHLFPAGEPVGVLAATAMSNPAYKAVLDSTPSSNSSW 861

Query: 1622 EMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAEEL 1801
            E+MKEILLC V+FKN+  DRRVILYLN+CGCGRKYCRE AA +VKN L+K+SLK+ A E 
Sbjct: 862  ELMKEILLCKVNFKNELIDRRVILYLNNCGCGRKYCRERAACLVKNQLKKVSLKDTAVEF 921

Query: 1802 LIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSFRKKKKD-- 1975
            +IEY    + + S   D GL+GH+HLNE +L+  NI ++D+L KC++ INSFR+KK    
Sbjct: 922  MIEYNNQLSGLGSLINDAGLVGHIHLNEDMLRELNIGVHDILQKCQETINSFRRKKVGKK 981

Query: 1976 ----GYLFKRILLAAXXXXXXXXXXXXXXXD--CLKFIWQDTSNYKLEEISHILVDTICP 2137
                GY FK  +L A               D  CL F  Q T + +         D ICP
Sbjct: 982  KFNIGYHFKNTVLFASEHCSFHHSCAEKRSDSPCLMFFLQATDDLETTTTLQYYADLICP 1041

Query: 2138 VLLGTIIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRV 2317
            VLL TIIKGDPR+ + +IIWI+PDT TWIRSP KS+KGE ALD+++EK  +KQ+GD WR 
Sbjct: 1042 VLLETIIKGDPRIGSANIIWIDPDTTTWIRSPNKSQKGEWALDIVLEKSVIKQSGDAWRT 1101

Query: 2318 VMDCCLPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVL 2497
            V+D CLPV+ LIDT+RSIPYAIKQ+QELLG+SCAF+QAVQRLST+VTMV KGVLK+HL+L
Sbjct: 1102 VLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAVQRLSTAVTMVAKGVLKEHLIL 1161

Query: 2498 LANSMTYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVV 2677
            LANSMT +GN +GFN  G KALSR+LN+QVPFTEATLF PRKCFERAAEKCH+D+L+S+V
Sbjct: 1162 LANSMTCAGNFVGFNSSGYKALSRALNIQVPFTEATLFTPRKCFERAAEKCHMDSLASIV 1221

Query: 2678 ASCAWGKQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAE 2857
            ASC+WGK VAVG+G  FD+L DTR++EL Q  G+DV++FLH+V S+ N EE  T  +GAE
Sbjct: 1222 ASCSWGKHVAVGTGVRFDVLWDTREVELTQEGGLDVFNFLHMV-STANVEEATTGALGAE 1280

Query: 2858 IDNLDLEDESIGNDMSPLRDS--EKPIFEDGMEFEDNQGEL----GWEKDSSLTAKSSAG 3019
            +D+L L DE   +  SP  +S  ++P+FED +EF+D  G+L     WEKDSS    S   
Sbjct: 1281 VDDLMLVDEMADSSFSPELNSSFDRPVFEDLVEFDDKLGDLPEKSNWEKDSSFHTDS--- 1337

Query: 3020 WGEAIDKAANGGWDQAIDKASGGGWDQAIDKASGGGWDQSVDKSSSGGWDQTINRVQNVD 3199
                     NGG D ++DK    G     D  S  G ++   + S+    Q  ++  +V 
Sbjct: 1338 ---------NGGKDWSVDK--NVGTVAVPDVWSSWGTEKGKTQDSNSAEAQLDSKKSSV- 1385

Query: 3200 AGPKVSDSAWPGWTNSDVGKESGFSKRAEESPGVSDWGSEERXXXXXXXXXXXXXXXKVD 3379
                 + SAW      +  KE+  S     +   +DW                     V 
Sbjct: 1386 ---LDTSSAW----GKNPAKENTTSTWGTTTASENDWCGRG-----------------VG 1421

Query: 3380 FERESPLTAKSSGSWDLAADRARDTGAGKGLDSAWSSWANAEVGNEGGFSKRLQEDSPSF 3559
             +  + L+ K SG  + ++  A +T A +   SAW +    E       + R  E+    
Sbjct: 1422 EDDSATLSGKKSGVLNTSSAWATNT-AREDAASAWGTNPAKENSTSTWGTTRANEN---- 1476

Query: 3560 CEWVAKEPQXXXXXXXXXXXXXXXVDSQRDSSSNAKSSGTGDVADEKVENVWAKATSKNS 3739
             +W  +E                 +  ++ S  +  S+   + A E   + W K  +K +
Sbjct: 1477 -DWCGRE---------VGQDDSASLSVKKSSVLDTSSAWATNTAREDAASAWGKHPAKEN 1526

Query: 3740 GWSKWGSNAVNKNDDLPERAGVDSS-----------NSGGDAVTLEIEEDKKSAITKS-- 3880
              S WG+   ++ND      G D S           N+     T    ED  SA  K+  
Sbjct: 1527 TTSTWGTTTASENDWCGRGVGHDDSASLSGKKSSVLNTSSVWATNTAREDATSAWGKNPA 1586

Query: 3881 ------------------------RDFPKDLQP--------------------------- 3907
                                    +  P DLQP                           
Sbjct: 1587 KENTTSTWGTTTASENDWCGREAGKVEPVDLQPTKPQDDSASLSGWDSPTGDGNSGERNH 1646

Query: 3908 QWGARKRFSDNGDSNGSPRGWGSSNNADWKNKRSRPPKP----MDNSGGTGLFTKTRQRL 4075
            QWG  +      +     R W SS   +WKNK +RPPK      DNS    L+T TRQRL
Sbjct: 1647 QWGQHRGDQTKKNRFEGARNWVSS-PGEWKNK-NRPPKSPGMVNDNSTMGALYTVTRQRL 1704

Query: 4076 DLFTAEEQDILADVEPIIETVTRIKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKDIKIG 4255
            D+FT+EEQD+L+++EP++ ++ RI +Q+GYNDGDPLS DDQSF++DNV N+HPDK  K+G
Sbjct: 1705 DMFTSEEQDVLSNIEPVMRSLRRIMHQSGYNDGDPLSGDDQSFVLDNVFNYHPDKAAKMG 1764

Query: 4256 AGIDYIMISKHASFPDSRCFYVVSSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAKYLRK 4435
             GID++ +++H SF DSRCF+VVS+DG  +DFSYRK L+N+I+ K+PD AE F+ KY   
Sbjct: 1765 CGIDHLTVNRHGSFQDSRCFFVVSTDGRTEDFSYRKCLDNYIREKFPDLAETFIGKYF-- 1822

Query: 4436 SQSRPGWNRDRAST 4477
              SR G NR+R  T
Sbjct: 1823 --SRRG-NRERNPT 1833


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score = 1524 bits (3947), Expect = 0.0
 Identities = 843/1637 (51%), Positives = 1073/1637 (65%), Gaps = 142/1637 (8%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGD YK VNEIG+P E+AQRITFEERVS HNI YLQ+LVDKKLCLTYRDG
Sbjct: 319  GSGFSSRSVITGDAYKLVNEIGVPFEVAQRITFEERVSVHNIRYLQELVDKKLCLTYRDG 378

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             S YSLREGS GHT+L+PGQ+VHRRIMDGD+VFINRPPTTHKHSLQAL VY+HDDH VKI
Sbjct: 379  SSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALRVYLHDDHVVKI 438

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPLICGPLSADFDGDCIHLFYPQS++A+AEVL LFSVEKQLLSSH+GN NLQLA DSLLS
Sbjct: 439  NPLICGPLSADFDGDCIHLFYPQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLS 498

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            LK+MF+KYF G+  A+QLAMFV + LP  A++        WT LQ+LQT LP SFDC GD
Sbjct: 499  LKMMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDCHGD 558

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
             YL   S  +K +F RD   S+  +I+TSI F KGP+EV+KFFD L PLLME+++ EGFS
Sbjct: 559  SYLIKNSNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFS 618

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            V L+D+ +P   L+ ++ ++Q++SPLLY L+ST +E V+LQLEN+LR VK+P +NF+LK 
Sbjct: 619  VGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENHLRSVKVPFTNFILKL 678

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTG-TYP 1258
            S++G L DSKS+SA++KVVQQIGFLG+Q+SDKG+FY+K L++DVA LFH +Y S    YP
Sbjct: 679  SSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNRYSSDKIDYP 738

Query: 1259 SEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYD 1438
            S +FGLV+ C FHGLDPY+EMVHSIS+REV+VRS+RGLTEPGTLFKNLMAILRDVVICYD
Sbjct: 739  SAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAILRDVVICYD 798

Query: 1439 GTVRNVCSNSIIQFEYGVNQG-MPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXX 1615
            GTVRNVCSNSIIQ EYG+  G M   S F  GEPVGVLAATAMS PAYKAVLD       
Sbjct: 799  GTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAATAMSTPAYKAVLDSTPSSNS 858

Query: 1616 XWEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAE 1795
             W+MMKEILLC VSFKN+  DRRVILYLN+C CGRKYC ENAAYVVK+HL+K++LK+AA 
Sbjct: 859  SWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVVKSHLKKVTLKDAAM 918

Query: 1796 ELLIEY--KPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSFRKKK 1969
            + +IEY  +PT      S L  GL+GH+HLN MLLK  NI M +VL +C++ ++SF+KKK
Sbjct: 919  DFMIEYNRQPT-----PSGLGPGLVGHVHLNRMLLKELNIDMTEVLRRCQETMSSFKKKK 973

Query: 1970 KDGYLFKRILLAAXXXXXXXXXXXXXXXDCLKFIWQDTSNYKLEEISHILVDTICPVLLG 2149
            K      R  ++                 CL F W  T +  LE  +HIL D + P+L  
Sbjct: 974  KKIAHALRFSISEHCAFHQWNGEESIDMPCLIF-WHQTRDVHLERTAHILADIVFPLLSE 1032

Query: 2150 TIIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVMDC 2329
            TIIKGDPR+ +  +IWI+PD+ +W ++P + + GELALDV +EK AVKQ GD WR V+DC
Sbjct: 1033 TIIKGDPRIKSASVIWISPDSTSWQKNPSRWQDGELALDVCLEKSAVKQNGDAWRNVLDC 1092

Query: 2330 CLPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLANS 2509
            CLPV+ LIDT+RS+PYAIKQVQELLGISCAF+Q +QRLS SV+MV+KGVL DHL+LLANS
Sbjct: 1093 CLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQMIQRLSKSVSMVSKGVLGDHLILLANS 1152

Query: 2510 MTYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVASCA 2689
            MT +GN+IGFN GG KALSR+LN+QVPFTEATLF PRKCFE+AAEKCH D+LSS+VASC+
Sbjct: 1153 MTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFTPRKCFEKAAEKCHKDSLSSIVASCS 1212

Query: 2690 WGKQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEIDNL 2869
            WGK VAVG+GS FDIL D +++   Q D VDVY+FLH+VRS    EE  ++C+G EI+++
Sbjct: 1213 WGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFLHMVRSG-KSEEPTSACLGEEIEDI 1271

Query: 2870 DLEDE--SIGNDMSPLRDSEKPIFEDGMEFE---DN-QGELGWEKDSSLTAKSSAG--W- 3022
             +EDE   +     P   SEKP+FED  EFE   DN  GE  WEK  SL A S+ G  W 
Sbjct: 1272 MVEDEYGELTLSPEPFSTSEKPVFEDSAEFEHCLDNYPGESKWEKAPSLGAVSTGGGQWE 1331

Query: 3023 ----GEAIDKAANGGWD-------------QAIDKASGGGWD-------QAIDKASGGGW 3130
                G+A + +    W               A +  S   WD       +A + ++   W
Sbjct: 1332 SNENGKATNSSDGNDWSGWGRKAEPDVTVTNAQENTSNSAWDTTSSWGNKATNSSNDNDW 1391

Query: 3131 DQ------------SVDKS-SSGGWD-------QTINRVQNVDAGPKVSDSAWPGWTNSD 3250
                          S++K+  SGGWD       +T +     +  PK S S W G     
Sbjct: 1392 SNCSTKEVERDSFTSMEKTPKSGGWDSASTWGTKTKDDSFKRETAPKKS-SQWSGLQKDK 1450

Query: 3251 VGKESGFSKRAEESPGVSDWGSEERXXXXXXXXXXXXXXXKVDFERES------PLTAKS 3412
               +  F K+AE +     W  E++               +V  + ES       +++K+
Sbjct: 1451 AETQDAFHKKAEMASKSGGW--EDKAWSRGTSKTEDNWSSQVKDKAESFQVQVQEVSSKT 1508

Query: 3413 SGSWDLAADRARDTGAGKGLDSAW-----------------------------SSWANAE 3505
            +G W       +++G     ++ W                             SSW +  
Sbjct: 1509 NG-WGSTGGWTKNSGGDHQSEAGWNDGQASMDREKVSDRWDRKATQKLESHQTSSWGSPT 1567

Query: 3506 VG-NEGGFSKRLQEDSPSFC--EW-VAKEPQXXXXXXXXXXXXXXXVDSQRDSSSNAKS- 3670
            VG ++  F  +  + S S     W   K P+                D  + S +N +S 
Sbjct: 1568 VGDSKDSFPSKAVDHSDSVVNHSWDRQKSPEASQGFGNDAWGQQKSRDVIKPSLANNESN 1627

Query: 3671 -SGTGDV---------------------------ADEKVENVWAKATSKNSGWSKWGSNA 3766
             SG G                             + EK +  W K  S  +  S WGS  
Sbjct: 1628 LSGWGSQIESNEGSDHGFDQVTNEQKSSDTRGWDSQEKTDKPWDKQKSLEASQS-WGS-- 1684

Query: 3767 VNKNDDL-----PERAGVDSSNSGGDAVTLEIEEDK--KSAITKSRDFPKDLQPQWGARK 3925
              +ND L     P+RA  + S    D  + +  + K  ++++   +    ++   WG+ K
Sbjct: 1685 --QNDSLGSWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGWEQQKSPEVSHGWGSHK 1742

Query: 3926 RFSDNGDSNG------SPRGWGSSNNADWKNKRSRPPK----PMDNSGGTGLFTKTRQRL 4075
              S+   S+G        +GWG  N  +WKN+++RPPK      D++    L+T + QRL
Sbjct: 1743 ESSEQTSSHGWDKKNQGSKGWG-GNAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRL 1801

Query: 4076 DLFTAEEQDILADVEPIIETVTRIKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKDIKIG 4255
            D+FT+EEQDILAD+EPI++++ ++ +Q+GYNDGDPLSA+DQSF++ +V N HPDK  K+G
Sbjct: 1802 DMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMG 1861

Query: 4256 AGIDYIMISKHASFPDSRCFYVVSSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAKYLRK 4435
            AGID+ M+S+H+SF +SRCFYVV++DGHK+DFSYRK L+NFIKGKYPD AE FVAKY RK
Sbjct: 1862 AGIDHFMVSRHSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRK 1921

Query: 4436 SQSRPGWNRDRASTPDE 4486
               RP  NRDR    +E
Sbjct: 1922 --PRPNRNRDRNPASEE 1936


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score = 1522 bits (3940), Expect = 0.0
 Identities = 845/1573 (53%), Positives = 1041/1573 (66%), Gaps = 80/1573 (5%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGD YK VNEIG+P EIAQRITFEERV+ HNI YLQ+LVD KLCLTY DG
Sbjct: 321  GSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDG 380

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             S+YSLREGSKGHTFLRPGQVVHRRIMDGD VFINRPPTTHKHSLQALSVY+HDDHTVKI
Sbjct: 381  SSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKI 440

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPLICGPLSADFDGDCIHLFYPQSL+A+AEVLELFSVEKQLLSSH GN NLQLATD+LLS
Sbjct: 441  NPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS 500

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            LK+MFKKYF  +   +QLAMF  + LPR A+ K+ +  A WT LQ+LQ+ LPP FD  GD
Sbjct: 501  LKVMFKKYFLDKAFTQQLAMFALSPLPRPALSKA-RCSARWTALQILQSVLPPGFDSCGD 559

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            RYL  KSE++K +F RD   S+  +IVTSI F KGP+EV++FFD L PLLMENL+ +GFS
Sbjct: 560  RYLIKKSEVLKGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 619

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            V LEDF + K AL +++  +Q +  LLY   STQ+E V LQ+EN++R VK+ ++ F+LKS
Sbjct: 620  VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKS 679

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTGTYPS 1261
            S +G L+DSKSDSA+SKVVQQ GFLG+Q+SD+GKFY+K LV+D+A  F   YP    YP+
Sbjct: 680  STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPT 739

Query: 1262 EQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYDG 1441
             ++GL++ C FHGLDPY+EM HSIS+REVIVRS+RGL+EPGTLFKNLMA+LRDVVICYDG
Sbjct: 740  AKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDG 799

Query: 1442 TVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXXXW 1621
            TVRNVCSNSIIQF+Y VN     +S F AGEPVGVLAATAMSNPAYKAVLD        W
Sbjct: 800  TVRNVCSNSIIQFDYAVN-ARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSW 858

Query: 1622 EMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAEEL 1801
            E+MKEILLC VSF ND  DRRVILYLNDCGCGRKYC+E AAY+VKN L+++SLK+AA E 
Sbjct: 859  ELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEF 918

Query: 1802 LIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSFRKKKKDGY 1981
            LIEYK    + +    D GL+GH+HLN++LL+   ISM+D+L KC++ + SF KKKK   
Sbjct: 919  LIEYKKPEIISD----DEGLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKK 974

Query: 1982 L---FKRILLAAXXXXXXXXXXXXXXXD--CLKFIWQDTSNYKLEEISHILVDTICPVLL 2146
            +   FK   L+                +  CL F+ +  S+  L+++S +L + I PVLL
Sbjct: 975  VVQFFKNTSLSVSECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLL 1034

Query: 2147 GTIIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVMD 2326
             TIIKGDPR+ + +IIWI+PDT  WIR+P K+RKGELALDV++EK  VKQ+GD WR V+D
Sbjct: 1035 ETIIKGDPRIYSANIIWISPDTTAWIRNPSKNRKGELALDVVLEKSVVKQSGDAWRTVLD 1094

Query: 2327 CCLPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLAN 2506
             CLPV  LIDT+RS+PYAIKQVQELLG+SCAFEQAVQRLS SVTMV KGVLK+HL+LLAN
Sbjct: 1095 SCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQAVQRLSASVTMVAKGVLKEHLILLAN 1154

Query: 2507 SMTYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVASC 2686
            SMT +G+L+GFN GG KALSRSLNVQVPFTEATLF PRKCFE+AAEKCH DNLSSVVA+C
Sbjct: 1155 SMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFTPRKCFEKAAEKCHTDNLSSVVAAC 1214

Query: 2687 AWGKQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEIDN 2866
            +WGK VAVG+GS FD+L  T   E NQ DGVDVYDFLH+VRSS   EE+DT C+G E+D 
Sbjct: 1215 SWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEESDTGCLGEEVDG 1274

Query: 2867 LDLEDESIGNDMSPLRD--SEKPIFEDGME----FEDNQGELGWEKDSSLTAKSSAGW-- 3022
            L  EDE     +SP  +  S+KP+FED +E     E+ Q    W+ ++     S   W  
Sbjct: 1275 L--EDE-FDWSLSPEHNLCSDKPVFEDLVEDQSWLENKQENANWDSEADCRKSSEDKWEK 1331

Query: 3023 -GEAIDKAANGGWDQAIDKASGGGWDQAIDKA-------SGGGWDQSVDKSSSGGWDQTI 3178
             G +++K ++G W    + A G   D  ++KA       SG G + S  +SS   W+   
Sbjct: 1332 LGTSLEKPSSG-W--RTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSCDKWE--- 1385

Query: 3179 NRVQNVDAGPKVSDSAW---PGWTNSDVGKESGFSKRAEESPGVSDWGSE---------- 3319
                NV +    S S W     W  S   K    S  A+ S G   WGSE          
Sbjct: 1386 ----NVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSG---WGSEASWGKSSGDR 1438

Query: 3320 --------ERXXXXXXXXXXXXXXXKVDFERESPLTAKSSGSWDLAA--DRARDTGAGK- 3466
                     +               +   E      AK S +W   A  D++ +    K 
Sbjct: 1439 QENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKV 1498

Query: 3467 ------------------GLDSAWSSW-----ANAEVGNEGGFSKRLQEDSPSFCEWVAK 3577
                              G  S WS W     A A  G  G       +   S   W  K
Sbjct: 1499 AAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKAS---WKTK 1555

Query: 3578 EPQXXXXXXXXXXXXXXXVDSQRDSSSNAKSSGTGDVADEK--VENV--WAKATSKNSGW 3745
                                ++ D S+      +   A+EK  V  +  W    +K +  
Sbjct: 1556 ALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDD 1615

Query: 3746 SKWGSNAVNKNDDLPERAGVDSSNSGGDAVTLEIEEDKKSAITKSRDFPKDLQPQWGARK 3925
            S WG   + +N       G D S+ G    T    E  + A + + D P       G+  
Sbjct: 1616 SCWGKQKLTEN-----AKGTDDSSWGKQKHTEN--ESPQPASSNAWDLP---DATGGSET 1665

Query: 3926 RFSDNGDSNGSP----RGWGSSNNADWKNKRSRPPKPM----DNSGGTGLFTKTRQRLDL 4081
                 G S   P    RGW SS+  +WK K++RPP+      D+S    ++T TRQRLD+
Sbjct: 1666 EMQVWGQSRKEPFKKNRGWASSSG-EWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDM 1724

Query: 4082 FTAEEQDILADVEPIIETVTRIKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKDIKIGAG 4261
            FT+EEQDIL+ VEPI+ ++ RI +Q+GYNDGD LSADD+SFI DNV N+HPDK +K+GAG
Sbjct: 1725 FTSEEQDILSHVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAG 1784

Query: 4262 IDYIMISKHASFPDSRCFYVVSSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAKYLRKSQ 4441
            ID+  + KH SF DSRC +VVS+DG +QDFSYRK LE+FI+GKYPD  + F+ KY R+ +
Sbjct: 1785 IDHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDEFIGKYFRRPR 1844

Query: 4442 SRPGWNRDRASTP 4480
            S  G NR+ +  P
Sbjct: 1845 S--GGNREPSLPP 1855


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score = 1521 bits (3937), Expect = 0.0
 Identities = 846/1573 (53%), Positives = 1040/1573 (66%), Gaps = 80/1573 (5%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGD YK VNEIG+P EIAQRITFEERV+ HNI YLQ+LVD KLCLTY DG
Sbjct: 321  GSGFSSRSVITGDAYKRVNEIGVPFEIAQRITFEERVNVHNINYLQELVDNKLCLTYSDG 380

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             S+YSLREGSKGHTFLRPGQVVHRRIMDGD VFINRPPTTHKHSLQALSVY+HDDHTVKI
Sbjct: 381  SSSYSLREGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKI 440

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPLICGPLSADFDGDCIHLFYPQSL+A+AEVLELFSVEKQLLSSH GN NLQLATD+LLS
Sbjct: 441  NPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHNGNLNLQLATDALLS 500

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            LK+MFKKYF  +  A+QLAMF  + LPR A+ K+  S   WT LQ+LQ+ LPP FD  GD
Sbjct: 501  LKVMFKKYFLDKAFAQQLAMFALSPLPRPALSKAHCSGPRWTALQILQSVLPPGFDSCGD 560

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            RYL  KSE++  +F RD   S+  +IVTSI F KGP+EV++FFD L PLLMENL+ +GFS
Sbjct: 561  RYLIKKSEVLNGDFDRDTIPSVINEIVTSIFFEKGPEEVLEFFDSLQPLLMENLFADGFS 620

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            V LEDF + K AL +++  +Q +  LLY   STQ+E V LQ+EN++R VK+ ++ F+LKS
Sbjct: 621  VSLEDFSLSKAALWNIQKEIQALYSLLYHRMSTQNELVDLQIENHIRHVKMLVAKFILKS 680

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTGTYPS 1261
            S +G L+DSKSDSA+SKVVQQ GFLG+Q+SD+GKFY+K LV+D+A  F   YP    YP+
Sbjct: 681  STLGYLIDSKSDSAVSKVVQQAGFLGLQLSDRGKFYSKTLVEDIASHFERIYPMDLNYPT 740

Query: 1262 EQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYDG 1441
             ++GL++ C FHGLDPY+EM HSIS+REVIVRS+RGL+EPGTLFKNLMA+LRDVVICYDG
Sbjct: 741  AKYGLIKGCFFHGLDPYEEMTHSISTREVIVRSSRGLSEPGTLFKNLMAVLRDVVICYDG 800

Query: 1442 TVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXXXW 1621
            TVRNVCSNSIIQF+Y VN     +S F AGEPVGVLAATAMSNPAYKAVLD        W
Sbjct: 801  TVRNVCSNSIIQFDYAVN-ARKSHSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNNSW 859

Query: 1622 EMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAEEL 1801
            E+MKEILLC VSF ND  DRRVILYLNDCGCGRKYC+E AAY+VKN L+++SLK+AA E 
Sbjct: 860  ELMKEILLCRVSFNNDPIDRRVILYLNDCGCGRKYCQERAAYMVKNQLKRVSLKDAAVEF 919

Query: 1802 LIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSFRKKKKDGY 1981
            LIEYK    + +    D GL+GH+HLN++LL+   ISM+D+L KC++ + SF KKKK   
Sbjct: 920  LIEYKKPEIISD----DEGLVGHIHLNKILLEDLRISMHDILPKCQETLKSFCKKKKMKK 975

Query: 1982 L---FKRILLAAXXXXXXXXXXXXXXXD--CLKFIWQDTSNYKLEEISHILVDTICPVLL 2146
            +   FK   L+                +  CL F+ +  S+  L+++S +L + I PVLL
Sbjct: 976  VVQFFKNTSLSISECCSFQQSCADKRSNMPCLMFVLRGASDSYLDKLSGVLANMIYPVLL 1035

Query: 2147 GTIIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVMD 2326
             TIIKGDPR+ + +IIWI+PDT  WIR+P K+RKGELALDV++EK  VKQ+GD WR V+D
Sbjct: 1036 ETIIKGDPRICSANIIWISPDTTAWIRNPSKNRKGELALDVVLEKSVVKQSGDAWRTVLD 1095

Query: 2327 CCLPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLAN 2506
             CLPV  LIDT+RS+PYAIKQVQELLG+SCAFEQAVQRLS SVTMV KGVLK+HL+LLAN
Sbjct: 1096 SCLPVFHLIDTRRSVPYAIKQVQELLGVSCAFEQAVQRLSASVTMVAKGVLKEHLILLAN 1155

Query: 2507 SMTYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVASC 2686
            SMT +G+L+GFN GG KALSRSLNVQVPFTEATLF PRKCFE+AAEK H DNLSSVVA+C
Sbjct: 1156 SMTCAGDLVGFNSGGYKALSRSLNVQVPFTEATLFMPRKCFEKAAEKRHTDNLSSVVAAC 1215

Query: 2687 AWGKQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEIDN 2866
            +WGK VAVG+GS FD+L  T   E NQ DGVDVYDFLH+VRSS   EE DT C+G E+D 
Sbjct: 1216 SWGKHVAVGTGSRFDLLWQTENEEFNQDDGVDVYDFLHMVRSSTGIEELDTGCLGEEVDG 1275

Query: 2867 LDLEDESIGNDMSPLRD--SEKPIFEDGME----FEDNQGELGWEKDSSLTAKSSAGW-- 3022
            L  EDE     +SP  +  S+KPIFED +E     E+ Q    W+ ++     S   W  
Sbjct: 1276 L--EDE-FDWSLSPEHNLCSDKPIFEDLVEDQSWLENKQENENWDSEADCRKSSEDKWEK 1332

Query: 3023 -GEAIDKAANGGWDQAIDKASGGGWDQAIDKA-------SGGGWDQSVDKSSSGGWDQTI 3178
             G +++K ++G W    + A G   D  ++KA       SG G + S  +SSS  W+   
Sbjct: 1333 LGTSLEKPSSG-W--RTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSSDKWE--- 1386

Query: 3179 NRVQNVDAGPKVSDSAWPGWTNSDVGKESGFSKRAEESPGV---SDWGSE---------- 3319
                NV +    S S W   T +  GK  G       SP     S WGSE          
Sbjct: 1387 ----NVGSPAAKSFSEWG--TEASWGKSFGDKPENVRSPAAKTSSGWGSEASWGKSPGDR 1440

Query: 3320 --------ERXXXXXXXXXXXXXXXKVDFERESPLTAKSSGSWDLAA--DRARDTGAGK- 3466
                     +               +   E      AK S +W   A  D++ +    K 
Sbjct: 1441 QENVGRSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKV 1500

Query: 3467 ------------------GLDSAWSSW-----ANAEVGNEGGFSKRLQEDSPSFCEWVAK 3577
                              G  S WS W     A A  G  G       +   S   W  K
Sbjct: 1501 AAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATASWGRNGSEENSGWDTKAS---WNTK 1557

Query: 3578 EPQXXXXXXXXXXXXXXXVDSQRDSSSNAKSSGTGDVADEK--VENV--WAKATSKNSGW 3745
                                ++ D S+      +   A+EK  V  +  W    +K +  
Sbjct: 1558 ALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTDD 1617

Query: 3746 SKWGSNAVNKNDDLPERAGVDSSNSGGDAVTLEIEEDKKSAITKSRDFPKDLQPQWGARK 3925
            S WG   + +N       G D S+ G    T    E  + A + + D P       G+  
Sbjct: 1618 SSWGKQKLTEN-----AKGTDDSSWGKQKHTEN--ESSQPASSNAWDLP---DATGGSET 1667

Query: 3926 RFSDNGDSNGSP----RGWGSSNNADWKNKRSRPPKPM----DNSGGTGLFTKTRQRLDL 4081
                 G S   P    RGW SS+  +WK K++RPP+      D+S    ++T TRQRLD+
Sbjct: 1668 EMQVWGQSRKEPFKKNRGWASSSG-EWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDM 1726

Query: 4082 FTAEEQDILADVEPIIETVTRIKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKDIKIGAG 4261
            FT+EEQDIL+DVEPI+ ++ RI +Q+GYNDGD LSADD+SFI DNV N+HPDK +K+GAG
Sbjct: 1727 FTSEEQDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAG 1786

Query: 4262 IDYIMISKHASFPDSRCFYVVSSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAKYLRKSQ 4441
            ID+  + KH SF DSRC +VVS+DG +QDFSYRK LE+FI+GKYP+  + F+ KY R+ +
Sbjct: 1787 IDHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPEFVDEFIGKYFRRPR 1846

Query: 4442 SRPGWNRDRASTP 4480
            S  G NR+ +  P
Sbjct: 1847 S--GGNREPSLPP 1857


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score = 1504 bits (3895), Expect = 0.0
 Identities = 843/1667 (50%), Positives = 1073/1667 (64%), Gaps = 172/1667 (10%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGD YK VNEIG+P E+AQRITFEERVS HNI YLQ+LVDKKLCLTYRDG
Sbjct: 349  GSGFSSRSVITGDAYKLVNEIGVPFEVAQRITFEERVSVHNIRYLQELVDKKLCLTYRDG 408

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             S YSLREGS GHT+L+PGQ+VHRRIMDGD+VFINRPPTTHKHSLQAL VY+HDDH VKI
Sbjct: 409  SSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALRVYLHDDHVVKI 468

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPLICGPLSADFDGDCIHLFYPQS++A+AEVL LFSVEKQLLSSH+GN NLQLA DSLLS
Sbjct: 469  NPLICGPLSADFDGDCIHLFYPQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLS 528

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            LK+MF+KYF G+  A+QLAMFV + LP  A++        WT LQ+LQT LP SFDC GD
Sbjct: 529  LKMMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDCHGD 588

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
             YL   S  +K +F RD   S+  +I+TSI F KGP+EV+KFFD L PLLME+++ EGFS
Sbjct: 589  SYLIKNSNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFS 648

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            V L+D+ +P   L+ ++ ++Q++SPLLY L+ST +E V+LQLEN+LR VK+P +NF+LK 
Sbjct: 649  VGLDDYSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENHLRSVKVPFTNFILKL 708

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTGT-YP 1258
            S++G L DSKS+SA++KVVQQIGFLG+Q+SDKG+FY+K L++DVA LFH +Y S    YP
Sbjct: 709  SSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNRYSSDKIDYP 768

Query: 1259 SEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYD 1438
            S +FGLV+ C FHGLDPY+EMVHSIS+REV+VRS+RGLTEPGTLFKNLMAILRDVVICYD
Sbjct: 769  SAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFKNLMAILRDVVICYD 828

Query: 1439 GTVRNVCSNSIIQFEYGVNQGMPDN-SEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXX 1615
            GTVRNVCSNSIIQ EYG+  GM    S F  GEPVGVLAATAMS PAYKAVLD       
Sbjct: 829  GTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVGVLAATAMSTPAYKAVLDSTPSSNS 888

Query: 1616 XWEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAE 1795
             W+MMKEILLC VSFKN+  DRRVILYLN+C CGRKYC ENAAYVVK+HL+K++LK+AA 
Sbjct: 889  SWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVVKSHLKKVTLKDAAM 948

Query: 1796 ELLIEY--KPTHAVVESSELDTGLIGHLHLNE--MLLKGSNISMNDVLAKCEDKINSFRK 1963
            + +IEY  +PT      S L  GL+GH+HLN   MLLK  NI M +VL +C++ ++SF+K
Sbjct: 949  DFMIEYNRQPT-----PSGLGPGLVGHVHLNRVRMLLKELNIDMTEVLRRCQETMSSFKK 1003

Query: 1964 KKKDGYLFKRILLAAXXXXXXXXXXXXXXXDCLKFIWQDTSNYKLEEISHILVDTICPVL 2143
            KKK      R  ++                 CL F W  T +  LE  +HIL D + P+L
Sbjct: 1004 KKKKIAHALRFSISEHCAFHQWNGEESIDMPCLIF-WHQTRDVHLERTAHILADIVFPLL 1062

Query: 2144 LGTIIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVM 2323
              TIIKGDPR+ +  +IWI+PD+ +W ++P + + GELALDV +EK AVKQ GD WR V+
Sbjct: 1063 SETIIKGDPRIKSASVIWISPDSTSWQKNPSRWQDGELALDVCLEKSAVKQNGDAWRNVL 1122

Query: 2324 DCCLPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLA 2503
            DCCLPV+ LIDT+RS+PYAIKQVQELLGISCAF+Q +QRLS SV+MV+KGVL DHL+LLA
Sbjct: 1123 DCCLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQMIQRLSKSVSMVSKGVLGDHLILLA 1182

Query: 2504 NSMTYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFA----------------------- 2614
            NSMT +GN+IGFN GG KALSR+LN+QVPFTEATLF                        
Sbjct: 1183 NSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFVSPFHSLVLSLYMKFNFFFLFFLN 1242

Query: 2615 -----PRKCFERAAEKCHVDNLSSVVASCAWGKQVAVGSGSAFDILLDTRKIELNQPDGV 2779
                 PRKCFE+AAEKCH D+LSS+VASC+WGK VAVG+GS FDIL D +++   Q D V
Sbjct: 1243 GXYTTPRKCFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVV 1302

Query: 2780 DVYDFLHLVRSSLNGEETDTSCIGAEIDNLDLEDE--SIGNDMSPLRDSEKPIFEDGMEF 2953
            DVY+FLH+VRS    EE  ++C+G EI+++ +EDE   +     P   SEKP+FED  EF
Sbjct: 1303 DVYNFLHMVRSG-KSEEPTSACLGEEIEDIMVEDEYGELTLSPEPFSTSEKPVFEDSAEF 1361

Query: 2954 E---DN-QGELGWEKDSSLTAKSSAG--W-----GEAIDKAANGGWD------------- 3061
            E   DN  GE  WEK  SL A S+ G  W     G+A + +    W              
Sbjct: 1362 EHCLDNYPGESKWEKAPSLGAVSTGGGQWESNENGKATNSSDGNDWSGWGRKAEPDVTVT 1421

Query: 3062 QAIDKASGGGWD-------QAIDKASGGGWDQ------------SVDKS-SSGGWD---- 3169
             A +  S   WD       +A + ++   W              S++K+  SGGWD    
Sbjct: 1422 NAQENTSNSAWDTTSSWGNKATNSSNDNDWSNCSTKEVERDSFTSMEKTPKSGGWDSAST 1481

Query: 3170 ---QTINRVQNVDAGPKVSDSAWPGWTNSDVGKESGFSKRAEESPGVSDWGSEERXXXXX 3340
               +T +     +  PK S S W G        +  F K+AE +     W  E++     
Sbjct: 1482 WGTKTKDDSFKRETAPKKS-SQWSGLQKDKAETQDAFHKKAEMASKSGGW--EDKAWSRG 1538

Query: 3341 XXXXXXXXXXKVDFERES------PLTAKSSGSWDLAADRARDTGAGKGLDSAW------ 3484
                      +V  + ES       +++K++G W       +++G     ++ W      
Sbjct: 1539 TSKTEDNWSSQVKDKAESFQVQVQEVSSKTNG-WGSTGGWTKNSGGDHQSEAGWNDGQAS 1597

Query: 3485 -----------------------SSWANAEVG-NEGGFSKRLQEDSPSFC--EW-VAKEP 3583
                                   SSW +  VG ++  F  +  + S S     W   K P
Sbjct: 1598 MDREKVSDRWDRKATQKLESHQTSSWGSPTVGDSKDSFPSKAVDHSDSVVNHSWDRQKSP 1657

Query: 3584 QXXXXXXXXXXXXXXXVDSQRDSSSNAKS--SGTGDV----------------------- 3688
            +                D  + S +N +S  SG G                         
Sbjct: 1658 EASQGFGNDAWGQQKSRDVIKPSLANNESNLSGWGSQIESNEGSDHGFDQVTNEQKSSDT 1717

Query: 3689 ----ADEKVENVWAKATSKNSGWSKWGSNAVNKNDDL-----PERAGVDSSNSGGDAVTL 3841
                + EK +  W K  S  +  S WGS    +ND L     P+RA  + S    D  + 
Sbjct: 1718 RGWDSQEKTDKPWDKQKSLEASQS-WGS----QNDSLGSWGQPQRASEECSRESQDDSST 1772

Query: 3842 EIEEDK--KSAITKSRDFPKDLQPQWGARKRFSDNGDSNG------SPRGWGSSNNADWK 3997
            +  + K  ++++   +    ++   WG+ K  S+   S+G        +GWG  N  +WK
Sbjct: 1773 QFSQLKPPETSLGWEQQKSPEVSHGWGSNKESSEQTSSHGWDKKNQGSKGWG-GNAGEWK 1831

Query: 3998 NKRSRPPK----PMDNSGGTGLFTKTRQRLDLFTAEEQDILADVEPIIETVTRIKNQTGY 4165
            N+++RPPK      D++    L+T + QRLD+FT+EEQDILAD+EPI++++ ++ +Q+GY
Sbjct: 1832 NRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGY 1891

Query: 4166 NDGDPLSADDQSFIVDNVLNHHPDKDIKIGAGIDYIMISKHASFPDSRCFYVVSSDGHKQ 4345
            NDGDPLSA+DQSF++ +V N HPDK  K+GAGID+ M+S+H+SF +SRCFYVV++DGHK+
Sbjct: 1892 NDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTDGHKE 1951

Query: 4346 DFSYRKSLENFIKGKYPDKAEAFVAKYLRKSQSRPGWNRDRASTPDE 4486
            DFSYRK L+NFIKGKYPD AE FVAKY RK   RP  NRDR    +E
Sbjct: 1952 DFSYRKCLDNFIKGKYPDLAEMFVAKYFRK--PRPNRNRDRNPASEE 1996


>ref|XP_004230024.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1 [Solanum lycopersicum]
          Length = 1632

 Score = 1417 bits (3669), Expect = 0.0
 Identities = 739/1124 (65%), Positives = 865/1124 (76%), Gaps = 19/1124 (1%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGDPYKGV EIGLPCEIAQ+ITFEERVSQHN+ YLQKLVD+KLCLTY+DG
Sbjct: 320  GSGFSSRSVITGDPYKGVGEIGLPCEIAQKITFEERVSQHNMAYLQKLVDEKLCLTYKDG 379

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             STYSLREGSKGHTFLRPGQ+VHRRIMDGD VFINRPPTTHKHSLQALSVY+HDDHTVKI
Sbjct: 380  SSTYSLREGSKGHTFLRPGQIVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKI 439

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPL+CGPLSADFDGDCIHLFYPQSLSA+AEVLELF+V KQLLSSHTGNFNLQLATDSLLS
Sbjct: 440  NPLMCGPLSADFDGDCIHLFYPQSLSAKAEVLELFAVGKQLLSSHTGNFNLQLATDSLLS 499

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            LKLMF  YFF +  A+QLAMF+P  LP SAV+   KS A WT LQ+L  ALP  FD  G+
Sbjct: 500  LKLMFSHYFFDKAAAQQLAMFLPMALPDSAVVDVRKSGAMWTTLQILGAALPDGFDSCGE 559

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
             +   KS+ + +++ RD+  SI  D++TSI F KGP +V+KFF+ L PLLMENL  EGFS
Sbjct: 560  THTIGKSQFLGIDYHRDLISSILNDVITSIYFMKGPNDVLKFFNSLQPLLMENLCTEGFS 619

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            + L DFY+ K     ++  +Q +S LL+ L+S+ +ESV++QLE++LR  KLP+ +FVLKS
Sbjct: 620  ISLRDFYMTKAVRDGIQERIQCMSKLLHHLRSSYNESVEVQLEHHLRNEKLPVIDFVLKS 679

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTGTYPS 1261
            S +G L+DSKS+SA +KVVQQIGFLG+QISD+GKFYTK LV D+A+LF  KYPS GT PS
Sbjct: 680  SGMGVLIDSKSESAFNKVVQQIGFLGLQISDRGKFYTKTLVHDMAQLFQKKYPSVGTNPS 739

Query: 1262 EQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYDG 1441
            E+FGLVRSCLF+GLDPYQ M+HSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYDG
Sbjct: 740  EEFGLVRSCLFYGLDPYQGMIHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYDG 799

Query: 1442 TVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXXXW 1621
            TVRNV SNSIIQFEYG + G    SEF AG+PVGVLAATAMSNPAYKAVLD        W
Sbjct: 800  TVRNVSSNSIIQFEYGSSGGSNLPSEFCAGDPVGVLAATAMSNPAYKAVLDSSPSSNSSW 859

Query: 1622 EMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAEEL 1801
            EMMKEILLCGVSFKND SDRRVILYLNDCGC R YCRE AAYVVKNHL K+ LK+AA+E 
Sbjct: 860  EMMKEILLCGVSFKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKNHLSKVCLKDAADEF 919

Query: 1802 LIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSFRKKKKDGY 1981
            LIEY    A  E+SE  TGLIGH+ LN+  L+   IS+ +V  +C++ I+SF+KKKK G 
Sbjct: 920  LIEYAGRQAGYENSETGTGLIGHIRLNQGQLENLGISVLEVHERCQENISSFQKKKKIGN 979

Query: 1982 LFKRILLAAXXXXXXXXXXXXXXXD--CLKFIWQDTSNYKLEEISHILVDTICPVLLGTI 2155
            LFKRI+L+                +  CL+F W D S+  LE +SHIL D ICP+LL T+
Sbjct: 980  LFKRIVLSVSEFCSFCHNSGSKCLNAPCLRFSWPDASDDHLERVSHILADMICPILLDTV 1039

Query: 2156 IKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVMDCCL 2335
            IKGDPRVS+ +I WI+PDT +WIRSP KS++GELALD+++EK+AVKQ GD WR++MD CL
Sbjct: 1040 IKGDPRVSSANIAWISPDTMSWIRSPSKSQRGELALDIVLEKEAVKQRGDAWRILMDSCL 1099

Query: 2336 PVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLANSMT 2515
            PVI LIDT RSIPYAIKQVQEL+GISCAFEQAV+RLSTSVTMVTKGVLKDHLVLLANSMT
Sbjct: 1100 PVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVKRLSTSVTMVTKGVLKDHLVLLANSMT 1159

Query: 2516 YSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVASCAWG 2695
             +GNL+GFN GGIKALSRSLNVQ+PFTEATLF PRKCFERAAEKCHVD+LSS+VASC+WG
Sbjct: 1160 CAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTPRKCFERAAEKCHVDSLSSIVASCSWG 1219

Query: 2696 KQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEIDNLDL 2875
            K VAVG+GS F++LL+TR +E N PD  DVY FLHLVR++   E   TSC+GAEID L+ 
Sbjct: 1220 KHVAVGTGSRFEVLLNTRNVEWNIPDTRDVYSFLHLVRNTSAQEVEGTSCLGAEIDELE- 1278

Query: 2876 EDESIGNDMSPLRD--SEKPIFEDGMEFEDNQ-------GELGWEKDSSLTAKSSAGWGE 3028
            EDE +G  +SP RD  SE P FED  EF+ N+           WEK SS + KS   W  
Sbjct: 1279 EDEDMGLYLSPNRDSGSEMPTFEDRAEFDYNENLDEGKPSGSAWEKASSGSVKSGGSWDM 1338

Query: 3029 AIDKAANGGWDQAIDKASGGGWDQAIDKASGGGWDQSVDKSSSGGWDQTINRVQNVDAG- 3205
            A  K  NG  +      S   W + +D+       QS     SG W     +V+  D G 
Sbjct: 1339 A-GKTQNGAEEGVNQSDSWSAWGKKVDEPENNR-QQSGSGEQSGSWSSWGKKVEK-DGGS 1395

Query: 3206 ---PKV--SDSAWPGWTN-SDVGKESG-FSKRAEESPGVSDWGS 3316
               PK   S+S+W    N   +G  +   +KR ++S  V+DW S
Sbjct: 1396 WDEPKQLNSESSWGKAPNGGGLGSATAEGNKRLDQS--VNDWSS 1437



 Score =  196 bits (498), Expect = 9e-47
 Identities = 117/304 (38%), Positives = 166/304 (54%), Gaps = 39/304 (12%)
 Frame = +2

Query: 3641 QRDSSSNAKSSGTGDVADEKVENVWAKATSKNSGWSKWGSNAVNKNDDLPERAGVDSSNS 3820
            ++ SS + KS G+ D+A  K +N   +  +++  WS WG   V++ ++  +++G    + 
Sbjct: 1323 EKASSGSVKSGGSWDMAG-KTQNGAEEGVNQSDSWSAWGKK-VDEPENNRQQSGSGEQSG 1380

Query: 3821 GGDAVTLEIEEDKKSAITKSRDFPKDLQPQ--WGARKRFSDNGDSNG--------SPRGW 3970
               +   ++E+D  S      D PK L  +  WG        G +          S   W
Sbjct: 1381 SWSSWGKKVEKDGGSW-----DEPKQLNSESSWGKAPNGGGLGSATAEGNKRLDQSVNDW 1435

Query: 3971 GSSNNAD-----------------------------WKNKRSRPPKPMDNSGGTGLFTKT 4063
             SS + D                             W+ K +RP +  D+S   G FT T
Sbjct: 1436 SSSVSRDGQKXTNTXXLYKKWWLEFFKRWWLELSEGWQWKNNRPARSADDSNRGGHFTAT 1495

Query: 4064 RQRLDLFTAEEQDILADVEPIIETVTRIKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKD 4243
            RQ++DLFTAEEQ+I++DV+PI+  V            DPLSADDQS+I+D VLN+HPDK 
Sbjct: 1496 RQKIDLFTAEEQEIISDVDPIMLKVR----------SDPLSADDQSYIIDTVLNYHPDKA 1545

Query: 4244 IKIGAGIDYIMISKHASFPDSRCFYVVSSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAK 4423
            +K+GAG+DYI +SKH +F D+RCFYVVS+DG KQDFS RK LENF++ KYPDKAE F  K
Sbjct: 1546 VKMGAGLDYITVSKHTNFQDTRCFYVVSTDGAKQDFSTRKCLENFVRSKYPDKAETFNEK 1605

Query: 4424 YLRK 4435
            Y +K
Sbjct: 1606 YFKK 1609


>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
            gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
            subunit [Medicago truncatula]
          Length = 2032

 Score = 1385 bits (3584), Expect = 0.0
 Identities = 766/1612 (47%), Positives = 999/1612 (61%), Gaps = 119/1612 (7%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSR+VITGD YK +NE+G+P E+AQRITFEERVS HNI YLQKLVD+ LCLTY++G
Sbjct: 405  GSGFSSRNVITGDGYKKINEVGIPLEVAQRITFEERVSIHNIHYLQKLVDENLCLTYKEG 464

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             STYSLREGSKGHT+L+PGQ+VHRRIMDGD VFINRPPTTHKHSLQAL VYIHDDHTVKI
Sbjct: 465  MSTYSLREGSKGHTYLKPGQIVHRRIMDGDTVFINRPPTTHKHSLQALVVYIHDDHTVKI 524

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPLICGPL ADFDGDC+HLFYPQSL+A+AEVLELFSVEKQLLSSH+GN NLQL+ DSLLS
Sbjct: 525  NPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLSADSLLS 584

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            LK++ K  F  R  A Q+AMF+   LP  A++K++   + WT +Q+LQ ALP SFDC+G 
Sbjct: 585  LKMLVKSCFLDRVAANQMAMFLLLPLPMPALLKATTGDSYWTSIQILQCALPFSFDCTGG 644

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            RYL  + E+++ +F+RD+  SI  +I  SI FSKGP+E + FFD + P LMEN++  GFS
Sbjct: 645  RYLIRQREILEFDFTRDILPSIINEIAASIFFSKGPQEALNFFDVIQPFLMENIFAHGFS 704

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            V L+DF I +   + +  S+  VSPLL  L+    E V  QLE  ++ ++LP+ NF LKS
Sbjct: 705  VGLQDFSISRAVKRVINRSIGKVSPLLRQLRGMYKELVAQQLEKVIQDIELPVINFALKS 764

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMK-YPSTGTYP 1258
            + +G L+DSKS SA+ KV+QQIGFLG Q+ ++GKFY+K LV+DVA  F +K +     YP
Sbjct: 765  TKLGDLIDSKSKSAVDKVIQQIGFLGQQLFERGKFYSKGLVEDVASHFQLKCFYDKDDYP 824

Query: 1259 SEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYD 1438
            S +FGL++ C FHGLDPY+E+VHSI++RE+I RS+RGL+EPGTLFKNLMAILRDVVICYD
Sbjct: 825  SAEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFKNLMAILRDVVICYD 884

Query: 1439 GTVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXXX 1618
            GTVRNVCSNSIIQFEYG+  G      F AGEPVGVLAAT+MSNPAYKAVLD        
Sbjct: 885  GTVRNVCSNSIIQFEYGIQSGDAAQHLFPAGEPVGVLAATSMSNPAYKAVLDASPSSNSS 944

Query: 1619 WEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAEE 1798
            W  MKEILLC V+F+N+ +DRRVILYLNDC CGR YCRENAAY+V+N LRK+SLK+AA +
Sbjct: 945  WGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRNYCRENAAYLVQNQLRKVSLKDAALD 1004

Query: 1799 LLIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSFRKKKKDG 1978
             ++EY+      + +E D GL+ H+ L E+ L+   I+M +V  KC++K+NSF +KKK  
Sbjct: 1005 FIVEYQQQRRRRDGTE-DAGLVCHIRLKEVKLEELKINMTEVYQKCQEKLNSFSRKKKLS 1063

Query: 1979 YLFKRILLAAXXXXXXXXXXXXXXXDCLKFIWQDTSNYKLEEISHILVDTICPVLLGTII 2158
              FKR  L                  C+ F+W D     L++ + +L D ICPVLL TII
Sbjct: 1064 PFFKRTEL---------IFSEFCSAPCVTFLWPD--GVDLDQTTKVLADMICPVLLETII 1112

Query: 2159 KGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVMDCCLP 2338
            +GDPR+S+  IIW+NP T TW+R+P KS  GELALDVI+EK+AVKQ+GD WR+V+D CLP
Sbjct: 1113 QGDPRISSASIIWVNPGTNTWVRNPSKSSNGELALDVILEKEAVKQSGDAWRIVLDSCLP 1172

Query: 2339 VIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLANSMTY 2518
            V+ LIDT+RSIPYAIKQ+QELLGI+C F+QA+QRL+ SV MV KGVL++HL+LLA+SMT 
Sbjct: 1173 VLHLIDTRRSIPYAIKQIQELLGIACTFDQAIQRLAASVRMVAKGVLREHLILLASSMTC 1232

Query: 2519 SGNLIGFNMGGIKALSRSLNVQVPFTEATLF--------------------------APR 2620
             GNL+GFN GG K L+R L++QVPFT+ATLF                           PR
Sbjct: 1233 GGNLVGFNTGGYKTLARQLDIQVPFTDATLFVSALVISKLQDVFCYYFSYFVNVIMQTPR 1292

Query: 2621 KCFERAAEKCHVDNLSSVVASCAWGKQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLH 2800
            KCFERAAEK H D+LSS+VASC+WGK VAVG+GS FDI+ D ++I+ N+ +G++VY FL+
Sbjct: 1293 KCFERAAEKHHSDSLSSIVASCSWGKHVAVGTGSKFDIVWDPKEIKTNEIEGMNVYKFLN 1352

Query: 2801 LVRSSLNGEETDTSCIGAEIDNLDLEDESIGNDMSPLRDSE-KPIFEDGMEFEDNQGELG 2977
            +V+   NGEE   +C+G +ID+L  +DE+   DMSP   S    +F++  E  +     G
Sbjct: 1353 MVKGLANGEEETNACLGEDIDDL-FDDENGDFDMSPQHASGFDAVFDETFELPNGSTSNG 1411

Query: 2978 WEKDS------SLTAKSSAGWGE----------AIDKAANGGWDQAIDK---ASGGGWDQ 3100
            W+ +       +  +   +GWG             D + +  W  A ++    S   W +
Sbjct: 1412 WDSNKDQIDQPNTNSNDWSGWGPNKSDLQVDVIQEDSSKSSAWGAATNQKSDQSASAWGK 1471

Query: 3101 AI---DKASGGGWDQSVDKSS-SGGWDQTINRV--QNVDAGPKV---SDSAWPG-WTNS- 3247
            A+   D +  G W  + +++S    W    N+   Q+  A  K     DS+  G W N+ 
Sbjct: 1472 AVVQEDSSKSGAWGTATNQNSEQPSWGAATNQKSDQSASAWGKAVVQEDSSKSGAWGNAK 1531

Query: 3248 ----DVGKESGFSKRAEESPGVSDWGSEERXXXXXXXXXXXXXXXKVDFERESPLTAKSS 3415
                +   +SG       S   S WG                   K D  +E    +   
Sbjct: 1532 SVVQEDSSKSGAPANTNHSSDQSCWGQITGGEERAQGESGGTKKWKADVSQEDSTNSGGW 1591

Query: 3416 GSWDLAADRARDTGAGKGLDSAWSS--WANAEVGNEGGFSKRLQEDSPSFCEWVAKEPQX 3589
             +W  +     +  + K  DS W+S  W   E  +        Q+DS     W A +P+ 
Sbjct: 1592 KAWGSSKPEVHEGESTKVQDS-WNSQKWKAGEDVS--------QKDSQKSSAWGATKPKS 1642

Query: 3590 XXXXXXXXXXXXXXVDSQRDSSSNAKSSGTGDVADEKVENVW-AKATSKNSGWSKWGSNA 3766
                               DSS     S   +   E V++ W AK    NS W K     
Sbjct: 1643 NDNRSSWGQKKDEIHVMPEDSS----RSNAWEQKPENVKDSWVAKVPVANSSWGK----- 1693

Query: 3767 VNKNDDLPERAGVDSSNSGGDAVTLEIEE-DKKSAITKSRDFPKDLQPQ----------- 3910
                ++ P  +  + +NS G   + E E  D K+    S   PK  + Q           
Sbjct: 1694 AKSPENRPWDSKNEPNNSFGKPNSQENEPWDSKNESDSSWGKPKSQESQPWDSKNESNSS 1753

Query: 3911 WGARKR-----FSDNGDSN--GSPRGW--------------------------------- 3970
            WG  K      +    +SN     RGW                                 
Sbjct: 1754 WGKPKSQENHPWDSKNESNQTAGSRGWDSQVASANSESDKSFQWGKQGRDSFKKNRFEGS 1813

Query: 3971 --GSSNNADWKNKRSRPPKPMDNSGGTGLFTKTRQRLDLFTAEEQDILADVEPIIETVTR 4144
              G  N  DWKN RSRP +P              QR +L+T EEQDI+ D+EPI++++ R
Sbjct: 1814 QSGGPNAGDWKN-RSRPVRP------------PGQRFELYTPEEQDIMKDIEPIVQSIRR 1860

Query: 4145 IKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKDIKIGAGIDYIMISKHASFPDSRCFYVV 4324
            I    GYNDGDPL+ +DQ ++++NV  HHPDK+ K+G G+D++M+SKH++F DSRC YVV
Sbjct: 1861 IMQLQGYNDGDPLANEDQKYVLENVFEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYVV 1920

Query: 4325 SSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAKYLRKSQSRPGWNRDRASTP 4480
              DG K+DFSYRK LEN ++ KYP+ AE+F  KY RK Q  P   RD+   P
Sbjct: 1921 LKDGKKEDFSYRKCLENLVRKKYPETAESFCGKYFRKPQ--PRVKRDQTPNP 1970


>gb|EOY19811.1| DNA-directed RNA polymerase E subunit 1, putative isoform 3
            [Theobroma cacao]
          Length = 1675

 Score = 1375 bits (3559), Expect = 0.0
 Identities = 758/1420 (53%), Positives = 944/1420 (66%), Gaps = 33/1420 (2%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSR VITGDPYK VNEIG+P EIAQRITFEERV+ HN+ YLQ LVD KLCLTYRDG
Sbjct: 320  GSGFSSRGVITGDPYKKVNEIGIPSEIAQRITFEERVNMHNMRYLQNLVDNKLCLTYRDG 379

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             STYSLREGSKGHTFLRPGQVVHRRIMDGD+VFINRPPTTHKHSLQALSVY+HDDHTVKI
Sbjct: 380  SSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKI 439

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPLICGPLSADFDGDCIHLFYPQSL+A+AEV ELFSVEKQLLSSH GN NLQLATDSLLS
Sbjct: 440  NPLICGPLSADFDGDCIHLFYPQSLAAKAEVFELFSVEKQLLSSHNGNLNLQLATDSLLS 499

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            L++M K   F +  A+QL+MF+ + LP+ A +K +    CWT LQ+LQTA P   DCSGD
Sbjct: 500  LRVMLKTLLFKKADAQQLSMFLSSALPQPAFLKGNSFGPCWTALQILQTAFPACLDCSGD 559

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            RYL  KS+++ V+FSRD+ QS+  ++VTSI F KGPKEV+ FFD L PLLMEN++ EGFS
Sbjct: 560  RYLISKSDILTVDFSRDLMQSVINEVVTSIFFEKGPKEVLNFFDSLQPLLMENVFAEGFS 619

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            V LEDF + +  +++++  +Q +SPLLY L+ST +E V LQ+EN++R  K P++NF+L S
Sbjct: 620  VSLEDFSVSREVIQNIQKDIQDISPLLYQLRSTYNELVGLQMENHIRVAKAPVANFILNS 679

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTGT-YP 1258
            SA+G L+DSKSDS ++KVVQQIGFLG+Q+S+KGKFY+K LV+DVA  F   YPS G  YP
Sbjct: 680  SALGDLIDSKSDSTVNKVVQQIGFLGLQLSNKGKFYSKTLVEDVAYQFQSIYPSDGVDYP 739

Query: 1259 SEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYD 1438
            S +FGL++SC FHGLDPY+ MVHSIS+REVIVRS+RGL+EPGTLFKNLMAILRDVVICYD
Sbjct: 740  SAEFGLIKSCFFHGLDPYEGMVHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICYD 799

Query: 1439 GTVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXXX 1618
            GTVRN+ SNSIIQF+YG+N       +F AGEPVGVLAATAMSNPAYKAVLD        
Sbjct: 800  GTVRNISSNSIIQFQYGLN--ARTKPQFPAGEPVGVLAATAMSNPAYKAVLDSTPSSNSS 857

Query: 1619 WEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAEE 1798
            WE+MKEILLC VS KND  DRRVILYL DC CGRKYC+ENAAY+VKNHLRK+ LK+ A E
Sbjct: 858  WELMKEILLCKVSLKNDLVDRRVILYLKDCDCGRKYCQENAAYLVKNHLRKVKLKDTAVE 917

Query: 1799 LLIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSFRKKKKDG 1978
            L+ EYK    V   SE + GL+GH+ LN+ +LK  NISM +V  KC++ I SFRKKKK  
Sbjct: 918  LIFEYKQQQTV---SESEAGLVGHILLNKAVLKELNISMQEVHMKCQETIISFRKKKKTA 974

Query: 1979 YLFKR--ILLAAXXXXXXXXXXXXXXXDCLKFIWQDTSNYKLEEISHILVDTICPVLLGT 2152
              FKR  +  +                 CL F  ++T +  L+     LVD I PVLL T
Sbjct: 975  DTFKRTDLFFSECCSIQQSCGGKWLDMSCLMFFCRNTKDDHLDCTLQDLVDIIYPVLLET 1034

Query: 2153 IIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVMDCC 2332
            +IKGDPR+ + +IIW++PDT TWIRSP K++KGELALDV++EK AVKQ GD WR V+DCC
Sbjct: 1035 VIKGDPRICSANIIWVSPDTTTWIRSPSKTQKGELALDVVLEKSAVKQNGDAWRTVIDCC 1094

Query: 2333 LPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLANSM 2512
            LPVI+LIDT+RSIPYAIKQVQELLGISCAFEQAVQRLSTSV+MV +GVLK+HL+LLANSM
Sbjct: 1095 LPVINLIDTQRSIPYAIKQVQELLGISCAFEQAVQRLSTSVSMVARGVLKEHLILLANSM 1154

Query: 2513 TYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVASCAW 2692
            T +GNLIGFN GG KALSRSLN+QVPF+EATLF PRKCFERAAEKCHVD+LSS+VASC+W
Sbjct: 1155 TCAGNLIGFNSGGYKALSRSLNIQVPFSEATLFTPRKCFERAAEKCHVDSLSSIVASCSW 1214

Query: 2693 GKQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEIDNLD 2872
            GK VAVG+GS FD+L D +++  +Q  G+DVY+FLH++ SS +G  + T+C+G E+D+L 
Sbjct: 1215 GKHVAVGTGSRFDVLWDRKEVGFDQKSGIDVYNFLHML-SSASGPSSTTTCLGEEVDDLM 1273

Query: 2873 LEDESIGNDMSPLRDS--EKPIFEDGMEFEDN----QGELGWEKDSSLTAKSSAGWGEAI 3034
              D      +SP   +  +KP+FED  +FE++      E  WEK  SL   SS     A 
Sbjct: 1274 DVDNMAEWSLSPEHSNGLDKPVFEDAADFENDLDFQPAESSWEKGVSLDKVSSWNVSSAW 1333

Query: 3035 DKAANGGWDQAIDKASGGGWDQAIDKASGGGWDQSVDKSSSGGWDQTINRVQNVDAG--P 3208
            +K A  G     DK +                  +  +S    W  + ++ Q+  A    
Sbjct: 1334 NKKAEDG-----DKFA-------------AALTSTTKQSDWCDWGTSKSKTQDAAAAATS 1375

Query: 3209 KVSDSAWPGWTNSDVGKESGFSKRAEESPGVSDWGSEERXXXXXXXXXXXXXXXKVDFER 3388
                + W  W         G SK   +    +  G+ E+               +V    
Sbjct: 1376 TTKKTEWCDW---------GTSKSKTQEVAATVTGTAEQ--NEWCDWRTSKSKIQVVAAA 1424

Query: 3389 ESPLTAKSS-GSWDLAADRARDTGAG--KGLDSAWSSWANAEVGNEGGFSKRLQEDSPSF 3559
             +  T +S  G W  +  + +D  A     +++ W  W        G    + Q+ SP  
Sbjct: 1425 VTSTTKQSEWGDWGTSKSKTQDVAAAVTGTMETEWGDW--------GKGKSKTQDVSPKV 1476

Query: 3560 CEWVAKEPQXXXXXXXXXXXXXXXVDSQRDSSSNAKSSGT--GDVADEKVENVWAKATSK 3733
                  E                    ++   SN   +GT  G +  E  +       + 
Sbjct: 1477 DGTCVNEQTKLSDWGLKKNDTQDVSMEEKTFKSNGADTGTSWGTMGKESEK----PDAND 1532

Query: 3734 NSGWSKWGSNAVNKNDDLPERAGVDSSNSGG---------DAVTLEIEEDKKSAITKSRD 3886
               WS WG+      D +P +   DSS S G               ++E  + A +   D
Sbjct: 1533 ALPWSGWGT-----QDVIPTKTLDDSSKSSGWEQQKSPECSQGWGSLDESNQPASSNGWD 1587

Query: 3887 FPKDL-------QPQWGARKRFSDNGDSNGSPRGWGSSNNADWKNKRSRPPKPM-DNSGG 4042
             P  L       Q QW         G S GS R W S  +A  KN   +  + M D+S  
Sbjct: 1588 TPNGLGSTQSEKQHQW---------GQSRGS-RRWAS--DASKKNHPVKSARVMNDDSSM 1635

Query: 4043 TGLFTKTRQRLDLFTAEEQDILADVEPIIETVTRIKNQTG 4162
              ++T TRQRLD+FT+EEQDIL+DVEP+++++ +I +Q+G
Sbjct: 1636 AAMYTATRQRLDMFTSEEQDILSDVEPLMQSIRKIMHQSG 1675


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score = 1342 bits (3474), Expect = 0.0
 Identities = 770/1643 (46%), Positives = 1005/1643 (61%), Gaps = 65/1643 (3%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGD Y+ VNE+G+PCEIAQ++TFEERV+ HNI+YLQ LVDK LCLT+RDG
Sbjct: 110  GSGFSSRSVITGDAYRAVNEVGVPCEIAQKMTFEERVNVHNIQYLQGLVDKNLCLTFRDG 169

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             STYSLREGSKGHTFLR GQ+VHRRIMDGD+VFINRPPTTHKHSLQAL VYIHDDH VKI
Sbjct: 170  LSTYSLREGSKGHTFLRLGQMVHRRIMDGDIVFINRPPTTHKHSLQALRVYIHDDHVVKI 229

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPL+CGPL+ADFDGDC+HLFYPQSLSARAEVLELFSVEKQLLSSH+GN NLQL+TDSLLS
Sbjct: 230  NPLMCGPLAADFDGDCVHLFYPQSLSARAEVLELFSVEKQLLSSHSGNLNLQLSTDSLLS 289

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQAC----------WTVLQLLQTA 691
            LK MF+ YF  R +A QLAM+  +LLP  A+ K+  S A           WT  Q+LQTA
Sbjct: 290  LKTMFEVYFLDRASANQLAMYASSLLPSPALWKACSSNAKKKKAHSSGPRWTAQQVLQTA 349

Query: 692  LPPSFDCSGDRYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLL 871
            LP  F+C GDR L + SE++K++F+RD+  S+  D++TS+ F+K PK+ + FFD L PLL
Sbjct: 350  LPSHFECHGDRLLIHDSEILKLDFNRDIVASVISDVLTSLFFNKSPKDALDFFDSLQPLL 409

Query: 872  MENLYMEGFSVCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVK 1051
            MENL+ EGFSV L DF+ PK+ L++++ ++Q +SPLL  L+S+ +E VQ+Q EN++R  K
Sbjct: 410  MENLFSEGFSVSLHDFFFPKSELQNIQRNIQDLSPLLLQLRSSFNELVQVQFENHIREFK 469

Query: 1052 LPISNFVLKSSAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHM 1231
             P+ NF+L SSA+G ++DS+SDSA+ K+VQQIGFLG+Q+SD+ KFY++ LV+DVA LFH 
Sbjct: 470  SPVGNFILISSALGSMIDSRSDSAIDKIVQQIGFLGLQLSDRRKFYSRGLVEDVASLFHQ 529

Query: 1232 KYPSTGTYPSEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAI 1411
            KYP    YPSE+FG V  C FHGLDPY+E+VHSI++REVIVRS++GL EPGTLFKNLMA+
Sbjct: 530  KYPFADVYPSEEFGFVSRCFFHGLDPYEEIVHSIATREVIVRSSKGLAEPGTLFKNLMAV 589

Query: 1412 LRDVVICYDGTVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVL 1591
            LRDVVICYDGTVRN+ SNS+IQFEYGV  GM   + F AG+PVGVLAATAMSNPAYKAVL
Sbjct: 590  LRDVVICYDGTVRNISSNSVIQFEYGVG-GMQSQNLFPAGDPVGVLAATAMSNPAYKAVL 648

Query: 1592 DXXXXXXXXWEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRK 1771
            D        W+MMKEIL C  +F+ND +DRRVILYLNDC CGRKYC+ENA+ +VKNHL+K
Sbjct: 649  DSSPNSNSSWDMMKEILFCRANFRNDINDRRVILYLNDCCCGRKYCQENASCLVKNHLKK 708

Query: 1772 ISLKEAAEELLIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKIN 1951
            +SL++AA EL IEYK      ES E+D GL+GH+HLN  LLK S I M+D+L KCE+++N
Sbjct: 709  VSLRDAAIELAIEYKRPKLEPESCEIDAGLVGHIHLNSGLLKASGIGMHDILQKCEEQVN 768

Query: 1952 SFRKKKKDGYLFKRILLA-AXXXXXXXXXXXXXXXDCLKFIWQDTSNYKLEEISHILVDT 2128
              RKKKK GY FKRILL+ +                CLKF WQD ++  LE   HI+ D 
Sbjct: 769  LLRKKKKYGYHFKRILLSVSDCCFFNHSDSKWTDMPCLKFFWQDMTDTDLERTKHIMADM 828

Query: 2129 ICPVLLGTIIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDP 2308
            ICPVLL TIIKGDPR+S V+IIWINP T TW++SPC S KGELA++V +EK+AV+ TGD 
Sbjct: 829  ICPVLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELAVEVALEKEAVRLTGDA 888

Query: 2309 WRVVMDCCLPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDH 2488
            WR+V+DCCLPV  LIDT+RSIPYAIKQ+Q+L GISCAF+QAVQRLSTSVTMVTKGVLK+H
Sbjct: 889  WRIVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQRLSTSVTMVTKGVLKEH 948

Query: 2489 LVLLANSMTYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLS 2668
            L+LLA+SMT +GNL+GFN  GIKAL R+LNVQVPFTEATL+ PRKCFERA+EKCHVD L+
Sbjct: 949  LLLLASSMTCAGNLVGFNTSGIKALCRALNVQVPFTEATLYTPRKCFERASEKCHVDTLA 1008

Query: 2669 SVVASCAWGKQVAVGSGSAFDILLDTRKIEL-NQPDGVDVYDFLHLVRSSLNGEETDTSC 2845
            S+V SC+WGK+V++G+G+ FD+L +T++IE+ ++P   DVY+FLHLV SS N EE D+  
Sbjct: 1009 SIVGSCSWGKRVSIGTGAKFDLLWETKEIEMADKP--TDVYNFLHLV-SSANEEEVDSGG 1065

Query: 2846 IGAEIDNLDLEDESIGNDMSPLRDSEKPIFEDGMEFEDNQGELGWEKDSSLTAKSSAGWG 3025
            +G +I++ + +D  +   +SP +++ K +FE+ +E            DS +T    + W 
Sbjct: 1066 LGEDIESFE-KDVYMEPALSPEQEN-KAVFEETLEI---------GVDSDITGADESSW- 1113

Query: 3026 EAIDKAANGGWDQAIDKASG---GGWDQAIDKASGGGWDQS--VDKSSSGGWDQTINRVQ 3190
            +A   +  G     ID  SG   GGW      + G   DQ+   D S +GGW    ++ +
Sbjct: 1114 DAFPSSGTGWNANKIDTGSGSAEGGW-----SSWGSKKDQANPEDSSKTGGWSSGGSKQK 1168

Query: 3191 NVDAGPKVSDSAWP-GWTNSDVGKESGFSKRAEESPGVSDWGSEERXXXXXXXXXXXXXX 3367
                 P+  DS+   GW   D  K  G S + + SP    WG   +              
Sbjct: 1169 -----PQPEDSSKSGGW---DASKSWGGSNQGDPSP---VWGQPVK------------AT 1205

Query: 3368 XKVDFERESPLTAKSSGSW-------DLAADRARDTGAGKGLDSAWSSWANAEVGNEGGF 3526
              +  E +    +   G W       DL+      T  G     +WS     +  +  G 
Sbjct: 1206 NDISIENDHGSGSAEGGGWANSGMKKDLSKQENSSTAGGWDASKSWSGSKPKDPSSAWGA 1265

Query: 3527 SKRLQEDSPSFCEWVAKEPQXXXXXXXXXXXXXXXVDSQRDSSSNAKSSGTGDVADEKVE 3706
             K+  +++     W   + +                  ++D      S+G         E
Sbjct: 1266 GKKTDDNN----GWKKSDSKKDLASGSVEDGGCSGWGPKKDLLQPEDSAG---------E 1312

Query: 3707 NVWAKATSKNSGWSKWGSNAVNKNDDLPERAGVDSSNSGGDAVTLEIEEDKKSAITK-SR 3883
            N W  + SK    SK  S+A  K     +  G   +N   D+  LE        + K ++
Sbjct: 1313 NGWGASKSK----SKEPSSAWGKPAQETDNIGWKKNNPQRDSENLEGTSGWNDKLQKENK 1368

Query: 3884 DFPKDLQP----QWGARKRFSDNGDSNGSPRG-----------------WGSSNNADWKN 4000
             F K  QP     W +    +      G  +G                 WG +    WK 
Sbjct: 1369 SFSKQSQPASSKDWDSTGNITAGSTGFGVEKGNEKPWDVASNVSVKKSTWGQTGGNSWK- 1427

Query: 4001 KRSRPPKPMDNSGGTGLFTKTRQRLDLFTAEEQDILADVEPIIETVTRIKNQTGYNDGDP 4180
            K  +  K  D  G    + K+ +  D +T+ +     +  P+ + V+  K  T  + G P
Sbjct: 1428 KNEQDEKDGDPQGLP--WGKSHKSSDSWTSGQ----GNQHPVSQGVSE-KQGTLSSWGQP 1480

Query: 4181 LSADDQSFIVDNVLNHHPDKDIKIGAGIDYIMISKHASFPDSRCFYVVSSDGHKQDFSYR 4360
              +  +    +N  N       + GAG                     S D  K++ + +
Sbjct: 1481 RDSSQK----NNNENGVSSNFNRQGAG--------------------KSWDSKKKESNVQ 1516

Query: 4361 KSLENFIKGKYPDKAEAFVAKYLRKSQSRPGWNRDRASTPDEGGTRRWAKDSEAGTPRWG 4540
             S        + D  EA  +     S +  GW+  +A    +G +  W    E       
Sbjct: 1517 SSWAQQGDSTWKDSKEARSSVKANNSTNSGGWSTGKALV--DGVSSSWGSQKEDRPQPKS 1574

Query: 4541 RDPGTPGWSKDSDAGTPGWS-------KDPETPGWGRDSEAE------TPQWGRD----P 4669
             D      + D DA   G S       +      WG+ SE++         WG D    P
Sbjct: 1575 NDRSVGDGNFDKDAKEEGLSSWDAKKVERKTQSSWGQPSESKNSAQSSADHWGSDKSNQP 1634

Query: 4670 G-TPGWGKESEAGTPGASRDHCW 4735
            G + GWG E       + +   W
Sbjct: 1635 GKSSGWGSEDTNAGKDSEKQDSW 1657



 Score =  219 bits (558), Expect = 1e-53
 Identities = 171/586 (29%), Positives = 268/586 (45%), Gaps = 84/586 (14%)
 Frame = +2

Query: 2936 EDGMEFEDNQGELGWEKDSSLTAKSSAGWGEAIDKAANGGWDQAIDKASG------GGWD 3097
            +D ++ ED+ GE GW    S + + S+ WG+   +  N GW +   +          GW+
Sbjct: 1301 KDLLQPEDSAGENGWGASKSKSKEPSSAWGKPAQETDNIGWKKNNPQRDSENLEGTSGWN 1360

Query: 3098 QAIDKASGGGWDQSVDKSSSGGWDQTIN---------------RVQNVDAGPKVSDSAWP 3232
              + K +     QS   +SS  WD T N               +  +V +   V  S W 
Sbjct: 1361 DKLQKENKSFSKQS-QPASSKDWDSTGNITAGSTGFGVEKGNEKPWDVASNVSVKKSTW- 1418

Query: 3233 GWTNSDVGKESGFSKRAEESPGVSDWGSEERXXXXXXXXXXXXXXXKVDF-ERESPLTAK 3409
            G T  +  K++   ++  +  G+  WG   +                    E++  L+  
Sbjct: 1419 GQTGGNSWKKNEQDEKDGDPQGLP-WGKSHKSSDSWTSGQGNQHPVSQGVSEKQGTLS-- 1475

Query: 3410 SSGSWDLAADRARDT-------------GAGKGLDS---------AW-----SSWANAEV 3508
               SW    D ++               GAGK  DS         +W     S+W +++ 
Sbjct: 1476 ---SWGQPRDSSQKNNNENGVSSNFNRQGAGKSWDSKKKESNVQSSWAQQGDSTWKDSKE 1532

Query: 3509 G----------NEGGFS--KRLQEDSPSFCEWVAKEPQXXXXXXXXXXXXXXXVDSQRDS 3652
                       N GG+S  K L +   S   W +++                  D  +D+
Sbjct: 1533 ARSSVKANNSTNSGGWSTGKALVDGVSS--SWGSQKEDRPQPKSNDRSVGDGNFD--KDA 1588

Query: 3653 SSNAKSSGTGDVADEKVENVWAKAT-SKNSGWSK---WGSNAVNKNDDLPERA---GVDS 3811
                 SS      + K ++ W + + SKNS  S    WGS+  N+    P ++   G + 
Sbjct: 1589 KEEGLSSWDAKKVERKTQSSWGQPSESKNSAQSSADHWGSDKSNQ----PGKSSGWGSED 1644

Query: 3812 SNSGGDAVTLEIEEDKKSAITKSRDFPK-----DLQPQWGARKRFSDNGDSNGSPRGWGS 3976
            +N+G D+   +       +  K     K     D Q  WG       N       RGWGS
Sbjct: 1645 TNAGKDSEKQDSWGKSNVSTWKKESGEKLHGSDDSQSPWGQPGGSGWNKKQPEGGRGWGS 1704

Query: 3977 SNNADWKNKRS----------RPPK-PMDNSGGTGLFTKTRQRLDLFTAEEQDILADVEP 4123
            SN  +WK++++          RPP+ P D+S    L T TR+R+D F  EE+D+L++VE 
Sbjct: 1705 SNTGEWKSRKNQNQNQNQNQNRPPRGPNDDSPRVAL-TATRKRMDEFPTEEKDVLSEVES 1763

Query: 4124 IIETVTRIKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKDIKIGAGIDYIMISKHASFPD 4303
            +++++ RI +Q+G  DG+PL  DDQ++++DN+LN+HPDK  KIGAG+D+I + KH++F +
Sbjct: 1764 LMQSIRRIMHQSGCVDGEPLLPDDQTYLIDNILNYHPDKAAKIGAGVDFITVKKHSNFQE 1823

Query: 4304 SRCFYVVSSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAKYLRKSQ 4441
            SRCFYVVS+DG   DFSY K +E F+KGKYP  AE+F +KY R+SQ
Sbjct: 1824 SRCFYVVSTDGKDTDFSYIKCIETFVKGKYPSVAESFTSKYFRRSQ 1869


>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
            gi|482562261|gb|EOA26451.1| hypothetical protein
            CARUB_v10022497mg [Capsella rubella]
          Length = 1959

 Score = 1331 bits (3444), Expect = 0.0
 Identities = 756/1670 (45%), Positives = 1027/1670 (61%), Gaps = 96/1670 (5%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGD Y+ VNE+G+P EIAQRITFE+RVS HNI YLQ+LVDKKLCL+Y  G
Sbjct: 319  GSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEDRVSVHNIRYLQELVDKKLCLSYTQG 378

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             +TYSLR+GSKGHT L+PGQVVHRR+MDGD+VFINRPPTTHKHSLQAL VY+H+D+TVKI
Sbjct: 379  STTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKI 438

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPL+C PLSADFDGDC+HLFYPQSLSA+AEV+ELFSV+KQLLSSHTG   LQ+  DSLLS
Sbjct: 439  NPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVDKQLLSSHTGQLILQMGCDSLLS 498

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            L++M ++ F  + TA+QLAM+    LP  A+ KSSKS   WTV Q+LQ A P    C GD
Sbjct: 499  LRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPAWTVFQILQLAFPERLSCKGD 558

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            R++   S++++ +F  DV  SI  +IVTSI   KGPKE + FFD L PLLME+L+ EGFS
Sbjct: 559  RFMVDGSDLLRFDFGVDVMASIISEIVTSIFLEKGPKEALGFFDSLQPLLMESLFAEGFS 618

Query: 902  VCLEDFYIPKNALKDV-EASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLK 1078
            + LED  + +  +  +    ++  SP++  L+ +  +  +LQLEN +  VK   +NF+LK
Sbjct: 619  LSLEDLSMSRADMAVIHNLIIRETSPMVSRLRLSYED--ELQLENSIHKVKEVAANFMLK 676

Query: 1079 SSAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTGTYP 1258
            S ++  L+D KS+SA++K+VQQ GFLG+Q+SDK KFYTK LV+D+A     KY    +  
Sbjct: 677  SYSMRNLIDMKSNSAINKLVQQTGFLGLQLSDKKKFYTKTLVEDMALFCKRKYGRISS-- 734

Query: 1259 SEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYD 1438
            S  FG+V+ C FHGLDPY+EM HSI++REVIVRS+RGL EPGTLFKNLMA+LRD+VI  D
Sbjct: 735  SGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITND 794

Query: 1439 GTVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXXX 1618
            GTVRN CSNS++QF+YGV+        F AGEPVGVLAATAMSNPAYKAVLD        
Sbjct: 795  GTVRNTCSNSVVQFKYGVDSERGHQGLFEAGEPVGVLAATAMSNPAYKAVLDSTANSNSS 854

Query: 1619 WEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAEE 1798
            WE+MKE+LLC V+F+N+T+DRRVILYLN+C CG+++C+ENAA  V+N L K+SLK  A E
Sbjct: 855  WELMKEVLLCKVNFQNNTNDRRVILYLNECRCGKRFCQENAACTVRNKLNKVSLKATAVE 914

Query: 1799 LLIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSF--RKKKK 1972
             L+EY+    + E   +D+ L GH+HLN+ LL+  NISM D+  KCED INS   +KKKK
Sbjct: 915  FLVEYRKQQTISEIFGIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKKK 974

Query: 1973 DGYLFKRILLAAXXXXXXXXXXXXXXXD--CLKFIWQDTSNYKLEEISHILVDTICPVLL 2146
                FKR  L+                D  CL F +  T N  LE    +L +TI PVLL
Sbjct: 975  ATDDFKRTSLSVSDCCSFRDPCGSKDSDMPCLMFSYNAT-NPDLERTLDVLCNTIYPVLL 1033

Query: 2147 GTIIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVMD 2326
             T+IKGDPR+ + +IIW + D  TWIR+   SR+GE  LDV +EK AVKQ+GD WRVV+D
Sbjct: 1034 ETVIKGDPRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWRVVID 1093

Query: 2327 CCLPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLAN 2506
             CL V+ LIDTKRSIPY+IKQVQELLG+SCAFEQAVQRLS SV MV+KGVLK+H++LLAN
Sbjct: 1094 SCLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVKMVSKGVLKEHIILLAN 1153

Query: 2507 SMTYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVASC 2686
            +MT SGN++GFN GG KAL+RSLN++ PFTEATL  PRKCFE+AAEKCH D+LS+VV SC
Sbjct: 1154 NMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRKCFEKAAEKCHTDSLSTVVGSC 1213

Query: 2687 AWGKQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEIDN 2866
            +WGK+V VG+GS F++L + ++  L+  +  DVY FL +VRS+ + +   +S        
Sbjct: 1214 SWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMVRSTTSSDAFVSS------PG 1267

Query: 2867 LDLEDESIGN-DMSPLRDSE--KPIFEDGMEFED-----NQGELGWEKDSSLTAKSSAGW 3022
             D+ +E +     SP RDS   +P FED  EF++      Q E  WEK SS        W
Sbjct: 1268 FDVTEEEMAEWAESPERDSALGEPKFEDSAEFQNLHDDGKQSESNWEKSSS--------W 1319

Query: 3023 GEAIDKAANGGWDQAIDKASGG------GWDQ--AIDKASG-GGWD-----QSVDKSSSG 3160
                D   +GG +  + K++GG       W++  +++K     GW+     Q   KS SG
Sbjct: 1320 ----DNGCSGGSEWGVSKSTGGESNTESNWEKTTSVEKEDAWSGWNTKKDAQESSKSDSG 1375

Query: 3161 G-W-----DQTINRVQNVDAGPKVSDSAWPGWTNSDVGKESGFSKRAEESPGVSDWGSEE 3322
            G W     D   N   N +  P   DS  P   N       G    +E+     +WG+E 
Sbjct: 1376 GAWGIKTKDDDANTTPNWETRPAQMDSIVPE-INEPTSDVWGLKSVSEKPWNKKNWGTES 1434

Query: 3323 RXXXXXXXXXXXXXXXKVDFERESPLTAKSSGSWDLAADRARDTGAGKGLDSAWSSWANA 3502
                                 +++  T   + +W     R  D G+G G+   W+  ++ 
Sbjct: 1435 APAAWGSTDADAWG----SSNKKNSETESDAAAWGSRDKRNSDIGSGAGVLGPWNKKSSE 1490

Query: 3503 EVGNEG--GFSKRLQEDSPSFCEWVAK--EPQXXXXXXXXXXXXXXXVDSQRDSSS---- 3658
               +    G S + + D+ ++  W     EP                 +++ + +S    
Sbjct: 1491 TESDAAAWGSSGKTKSDAATWSPWDKNNMEPDSEPAGWGSQGNMKSETETESNGASWGSS 1550

Query: 3659 --------------------NAKSSGTGDVADEKVE--------NVWAKATSK-NSGWSK 3751
                                N++ S  G    +K E          W K  S+  SG + 
Sbjct: 1551 GKTKSGAAAWGSCDKNNMETNSEPSAWGSQGKKKAETESGPASWGAWDKKISETESGLAG 1610

Query: 3752 WGS-NAVNKNDDLPERAGVDSSNSGGDAVTLEIEEDKKS-----AITKSRDFPKDLQPQW 3913
            WG+ + +N   +    A          A   +  ED  +       TKS +  +  + QW
Sbjct: 1611 WGNGDKINSETESGAAAWGSWGQPSPTAADKDTNEDDGNPWVSLKETKSGEKDEKEKSQW 1670

Query: 3914 G-ARKRFSDNGDSNGSPRGWGSSNNADWKNKRS---RPPKPMDNSGGTGLFTKTRQRLDL 4081
            G   K+F     S+GS  GW +   A+W+ KR+   RPP+  DN     +FT T+QRLD 
Sbjct: 1671 GNPAKKF----PSDGSYGGWSNGGGAEWRGKRNHTPRPPRSEDNL--APMFTATKQRLDS 1724

Query: 4082 FTAEEQDILADVEPIIETVTRIKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKDIKIGAG 4261
            FT+EEQ++L+DVEP++ T+ +I + +GY DG+P+S DD++F+++ +LN HP+K+ K+G+ 
Sbjct: 1725 FTSEEQELLSDVEPVMRTLRKIMHMSGYPDGEPISDDDKTFVLEKILNFHPEKERKLGSA 1784

Query: 4262 IDYIMISKHASFPDSRCFYVVSSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAKYLRKSQ 4441
            +D+I + KH +F D+RCF+VVS+DG KQDFSYRKSL N++  KYPD+AE F+ KY +K  
Sbjct: 1785 VDFITVDKHTTFTDTRCFFVVSTDGAKQDFSYRKSLNNYLMTKYPDRAEEFIDKYFKK-- 1842

Query: 4442 SRPGWNRDR----ASTPDE------------GGTRRWAKDSEAGTPRWGRDPGTPGWSKD 4573
             RP  NRDR    A+ P E            G    +   +++ +P   +          
Sbjct: 1843 PRPSGNRDRNNQDATPPGEEQSQPLTQSIGNGSEEDFQTQTQSQSPNQTQTQSPSQTQAP 1902

Query: 4574 SDAGTPGWSKDPETPGWGRDSEAETPQWGRDPGTPGWGKESEAGTPGASR 4723
            S   +P  ++ P        +++++P   + P       ++++ +P  ++
Sbjct: 1903 SQTQSPSQTQSPPQSQSPAQTQSQSPSQTQSPPQTQSPAQTQSQSPSQTQ 1952


>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
            NRPD1b [Arabidopsis lyrata subsp. lyrata]
          Length = 1947

 Score = 1330 bits (3442), Expect = 0.0
 Identities = 770/1588 (48%), Positives = 986/1588 (62%), Gaps = 99/1588 (6%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGD Y+ VNE+G+P EIAQRITFEERVS HNI YLQKLVD KLCL+Y  G
Sbjct: 319  GSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNIGYLQKLVDDKLCLSYTQG 378

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             +TYSLR+GSKGHT L+PGQVVHRR++DGD+VFINRPPTTHKHSLQAL VY+H+D+TVKI
Sbjct: 379  STTYSLRDGSKGHTVLKPGQVVHRRVIDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKI 438

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPL+C PLSADFDGDC+HLFYPQSLSA+AEV+ELFSVEKQLLSSHTG   LQ+  DSLLS
Sbjct: 439  NPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGCDSLLS 498

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            L++M +  F  + TA+QLAM+    LP  A+ KSSKS   WTV Q+LQ A P    C GD
Sbjct: 499  LRVMLEGVFLDKATAQQLAMYGSLTLPPPALRKSSKSGPAWTVFQILQLAFPERLSCKGD 558

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            R++   S+++K +F  D   SI  +IVTSI   KGPKE + FFD L PLLME+L+ EGFS
Sbjct: 559  RFMVDGSDLLKFDFGVDAMASIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFS 618

Query: 902  VCLEDFYIPKNALKDVEASLQI--VSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVL 1075
            V LED  + + A  DV  +L I  +SP++  L+ +  +  +LQLEN L  VK   +NF+L
Sbjct: 619  VSLEDLSMSR-ADMDVIHNLIIREISPMVSRLRLSYRD--ELQLENSLHKVKEVAANFML 675

Query: 1076 KSSAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTGTY 1255
            KS ++  L+D KS+SA++K+VQQ GFLG+Q+SDK KFYTK LV+D+A     KY    + 
Sbjct: 676  KSYSMRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKTLVEDMALFCKRKYGRISS- 734

Query: 1256 PSEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICY 1435
             S  FG+V+ C FHGLDPY+EM HSI++REVIVRS+RGL EPGTLFKNLMA+LRD+VI  
Sbjct: 735  -SGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITN 793

Query: 1436 DGTVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXX 1615
            DGTVRN CSNS++QF YGV+        F AGEPVGVLAATAMSNPAYKAVLD       
Sbjct: 794  DGTVRNTCSNSVVQFTYGVDSERGHQGLFEAGEPVGVLAATAMSNPAYKAVLDSTANSNS 853

Query: 1616 XWEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAE 1795
             WE MKE+LLC V+F+N T+DRRVILYLN+C CG+++C+ENAAY V+N L+K+SLK+ A 
Sbjct: 854  SWEQMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAAYTVRNKLKKVSLKDTAV 913

Query: 1796 ELLIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSF--RKKK 1969
            E L+EY+    + E   +D+ L GH+HL++ LL+  NISM D+L KCED INS   +KKK
Sbjct: 914  EFLVEYRKQQTISEIFGIDSCLHGHIHLDKTLLQDWNISMQDILQKCEDVINSLGQKKKK 973

Query: 1970 KDGYLFKRILLAAXXXXXXXXXXXXXXXD--CLKFIWQDTSNYKLEEISHILVDTICPVL 2143
            K    FKR  L+                D  CL F +  T +  LE    +L +TI PVL
Sbjct: 974  KATDDFKRTSLSVSECCSFQDPCGRKDSDMPCLMFSYSAT-DPDLERTLDVLCNTIYPVL 1032

Query: 2144 LGTIIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVM 2323
            L T+IKGDPR+ + +IIW + D  TWIR+   SR+GE  LDV +EK AVKQ+GD WRVV+
Sbjct: 1033 LETVIKGDPRICSANIIWNSSDMTTWIRNCHASRRGEWVLDVTVEKSAVKQSGDAWRVVI 1092

Query: 2324 DCCLPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLA 2503
            D CL V+ LIDTKRSIPY+IKQVQELLG+SCAFEQAVQRLS SV MV+KGVLK+H++LLA
Sbjct: 1093 DACLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLA 1152

Query: 2504 NSMTYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVAS 2683
            N+MT SGN++GFN GG KAL+RSLN++ PFTEATL  PR+CFE+AAEKCH D+LS+VV S
Sbjct: 1153 NNMTCSGNMLGFNSGGYKALTRSLNIKAPFTEATLITPRRCFEKAAEKCHTDSLSTVVGS 1212

Query: 2684 CAWGKQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEID 2863
            C+WGK+V VG+GS F++L + ++  L+  +  DVY FL +VRS+ N +   +S       
Sbjct: 1213 CSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMVRSTTNADAYVSS------P 1266

Query: 2864 NLDLEDESIGN-DMSPLRDSE--KPIFEDGMEF-----EDNQGELGWEKDSSLTAKSSAG 3019
              D+ +E +     SP RDS   +P FED  EF     E    E  WEK SS        
Sbjct: 1267 GFDVTEEEMAEWAESPERDSALGEPKFEDSAEFQNLHDEGKPSESNWEKSSS-------- 1318

Query: 3020 WGEAIDKAANGGWDQAIDKASGG------GWDQAIDKASGGGWD--------QSVDKSSS 3157
            W    D   +GG +  + K +GG       W++  +      W         Q   KS S
Sbjct: 1319 W----DNGCSGGSEWGVSKNTGGEANPESNWEKTTNVEKEDAWSSWNTKKDAQESSKSDS 1374

Query: 3158 G-GW-----DQTINRVQNVDAGPKVSDSAWP--GWTNSDV-GKESGFSKRAEESPGVSD- 3307
            G  W     D   +   N +  P  +DS  P      SDV G +SG  K  ++  G ++ 
Sbjct: 1375 GVAWGLKTKDDDADTTPNWETRPAQTDSIVPENNEPTSDVWGHKSGSDKSWDKKNGGTES 1434

Query: 3308 ----WGSEERXXXXXXXXXXXXXXXKVDFERESPLTAKSS---------------GSWDL 3430
                WGS +                K + E ES   A  S               G W+ 
Sbjct: 1435 APAAWGSTD--------AAVWGSSDKKNSETESDAAAWGSRDKKNSEVGSGAGVLGPWNK 1486

Query: 3431 AADRARDTGAGKGLD-------SAWSSW--ANAEVGNE----GGFSKRLQEDSPSFCEWV 3571
             + +    GA  G         +AWSSW   N E  +E    G  SK   E       W 
Sbjct: 1487 KSSKTESDGATWGSSDKTKSGAAAWSSWDKKNMETDSEPAAWGSQSKNKPETESGPSTWG 1546

Query: 3572 AKEPQXXXXXXXXXXXXXXXVDSQR-DSSSNAKSSGTGDVADEKVEN-----------VW 3715
            A + +               VD +  ++ S   + G  D      E+           VW
Sbjct: 1547 AWDTK--KSETESGPAGWGIVDKKNSETESGPAAMGNWDKKKSNTESGPAAWGSTDAAVW 1604

Query: 3716 AKATSKN----SGWSKWGSNAVNKNDDLPERAGVDSSNSGGDAVTLEIEEDKKS------ 3865
              +   N    S  + WGS     ++     +G  +  S G        ED         
Sbjct: 1605 GFSDKNNSETESDAAAWGSRDKKTSE---TESGAAAWGSWGQPTPTAANEDANEDDENPW 1661

Query: 3866 ---AITKSRDFPKDLQPQWG-ARKRFSDNGDSNGSPRGWGSSNNADWKNKRS---RPPKP 4024
                 TKSRD     + QWG   K+F  +G       GW +   ADWK KR+   RPP+ 
Sbjct: 1662 VSLKETKSRDKDDKERIQWGNPAKKFPSSG-------GWSNGGGADWKGKRNHTPRPPRS 1714

Query: 4025 MDNSGGTGLFTKTRQRLDLFTAEEQDILADVEPIIETVTRIKNQTGYNDGDPLSADDQSF 4204
             DN     +FT TRQRLD FT+EEQ++L+DVEP++ T+ +I + + Y DGDP+S DD++F
Sbjct: 1715 EDNL--APMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTF 1772

Query: 4205 IVDNVLNHHPDKDIKIGAGIDYIMISKHASFPDSRCFYVVSSDGHKQDFSYRKSLENFIK 4384
            +++ +LN HP K+ K+G+G+D+I + KH  F DSRCF+VVS+DG KQDFSYRKSL N++ 
Sbjct: 1773 VLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLM 1832

Query: 4385 GKYPDKAEAFVAKYLRKSQSRPGWNRDR 4468
             KYPD+AE F+ KY  K   RP  NRDR
Sbjct: 1833 MKYPDRAEEFIDKYFTK--PRPSGNRDR 1858


>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
            gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
            Full=DNA-directed RNA polymerase V subunit 1; AltName:
            Full=DNA-directed RNA polymerase D subunit 1b;
            Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
            AltName: Full=DNA-directed RNA polymerase E subunit 1;
            Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
            DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
            DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
            Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
            AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
            gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
            alpha subunit [Arabidopsis thaliana]
            gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
            large subunit [Arabidopsis thaliana]
            gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
            [Arabidopsis thaliana]
          Length = 1976

 Score = 1316 bits (3407), Expect = 0.0
 Identities = 752/1574 (47%), Positives = 984/1574 (62%), Gaps = 85/1574 (5%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGD Y+ VNE+G+P EIAQRITFEERVS HN  YLQKLVD KLCL+Y  G
Sbjct: 319  GSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCLSYTQG 378

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             +TYSLR+GSKGHT L+PGQVVHRR+MDGD+VFINRPPTTHKHSLQAL VY+H+D+TVKI
Sbjct: 379  STTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKI 438

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPL+C PLSADFDGDC+HLFYPQSLSA+AEV+ELFSVEKQLLSSHTG   LQ+ +DSLLS
Sbjct: 439  NPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLS 498

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            L++M ++ F  + TA+QLAM+    LP  A+ KSSKS   WTV Q+LQ A P    C GD
Sbjct: 499  LRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPAWTVFQILQLAFPERLSCKGD 558

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            R+L   S+++K +F  D   SI  +IVTSI   KGPKE + FFD L PLLME+L+ EGFS
Sbjct: 559  RFLVDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFS 618

Query: 902  VCLEDFYIPKNALKDVEASLQI--VSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVL 1075
            + LED  + + A  DV  +L I  +SP++  L+ +  +  +LQLEN +  VK   +NF+L
Sbjct: 619  LSLEDLSMSR-ADMDVIHNLIIREISPMVSRLRLSYRD--ELQLENSIHKVKEVAANFML 675

Query: 1076 KSSAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTGTY 1255
            KS +I  L+D KS+SA++K+VQQ GFLG+Q+SDK KFYTK LV+D+A     KY    + 
Sbjct: 676  KSYSIRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKTLVEDMAIFCKRKYGRISS- 734

Query: 1256 PSEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICY 1435
             S  FG+V+ C FHGLDPY+EM HSI++REVIVRS+RGL EPGTLFKNLMA+LRD+VI  
Sbjct: 735  -SGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITN 793

Query: 1436 DGTVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXX 1615
            DGTVRN CSNS+IQF+YGV+        F AGEPVGVLAATAMSNPAYKAVLD       
Sbjct: 794  DGTVRNTCSNSVIQFKYGVDSERGHQGLFEAGEPVGVLAATAMSNPAYKAVLDSSPNSNS 853

Query: 1616 XWEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAE 1795
             WE+MKE+LLC V+F+N T+DRRVILYLN+C CG+++C+ENAA  V+N L K+SLK+ A 
Sbjct: 854  SWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKDTAV 913

Query: 1796 ELLIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSF--RKKK 1969
            E L+EY+    + E   +D+ L GH+HLN+ LL+  NISM D+  KCED INS   +KKK
Sbjct: 914  EFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKK 973

Query: 1970 KDGYLFKRILLAAXXXXXXXXXXXXXXXD--CLKFIWQDTSNYKLEEISHILVDTICPVL 2143
            K    FKR  L+                D  CL F +  T +  LE    +L +T+ PVL
Sbjct: 974  KATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTFSYNAT-DPDLERTLDVLCNTVYPVL 1032

Query: 2144 LGTIIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVM 2323
            L  +IKGD R+ + +IIW + D  TWIR+   SR+GE  LDV +EK AVKQ+GD WRVV+
Sbjct: 1033 LEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWRVVI 1092

Query: 2324 DCCLPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLA 2503
            D CL V+ LIDTKRSIPY++KQVQELLG+SCAFEQAVQRLS SV MV+KGVLK+H++LLA
Sbjct: 1093 DSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLA 1152

Query: 2504 NSMTYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVAS 2683
            N+MT SG ++GFN GG KAL+RSLN++ PFTEATL APRKCFE+AAEKCH D+LS+VV S
Sbjct: 1153 NNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCHTDSLSTVVGS 1212

Query: 2684 CAWGKQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEID 2863
            C+WGK+V VG+GS F++L + ++  L+  +  DVY FL +V S+ N +   +S       
Sbjct: 1213 CSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMVISTTNADAFVSS------P 1266

Query: 2864 NLDLEDESIGN-DMSPLRDSE--KPIFEDGMEFEDNQGELGWEKDSSLTAKSSAGWGEAI 3034
              D+ +E +     SP RDS   +P FED  +F++   E    K S    + S+ W    
Sbjct: 1267 GFDVTEEEMAEWAESPERDSALGEPKFEDSADFQNLHDE---GKPSGANWEKSSSW---- 1319

Query: 3035 DKAANGGWDQAIDKASGG------GWDQAIDKASGGGWD--------QSVDKSSSGG-W- 3166
            D   +GG +  + K++GG       W++  +      W         Q   KS SGG W 
Sbjct: 1320 DNGCSGGSEWGVSKSTGGEANPESNWEKTTNVEKEDAWSSWNTRKDAQESSKSDSGGAWG 1379

Query: 3167 ----DQTINRVQNVDAGPKVSDSAWPGWTNSDVGKESGFSKRAEESPGVSDWGSEER-XX 3331
                D   +   N +  P   DS  P   N       G    +++S    +WG+E     
Sbjct: 1380 IKTKDADADTTPNWETSPAPKDSIVPE-NNEPTSDVWGHKSVSDKSWDKKNWGTESAPAA 1438

Query: 3332 XXXXXXXXXXXXXKVDFERESPLTAKSS---------------GSWDLAADRARDTGAGK 3466
                         K + E ES   A  S               G W+  +      GA  
Sbjct: 1439 WGSTDAAVWGSSDKKNSETESDAAAWGSRDKNNSDVGSGAGVLGPWNKKSSETESNGATW 1498

Query: 3467 GLD-------SAWSSW--ANAEVGNE----GGFSKRLQEDSPSFCEWVAKEPQXXXXXXX 3607
            G         +AW+SW   N E  +E    G   K+  E       W A + +       
Sbjct: 1499 GSSDKTKSGAAAWNSWDKKNIETDSEPAAWGSQGKKNSETESGPAAWGAWDKK---KSET 1555

Query: 3608 XXXXXXXXVDSQRDSSSNAKSSGTGDVADEKVENVWAKATSKNSGWSKWGSNAVNKNDDL 3787
                    +  +++S +    +  G+   +K +     A   ++  + WGS+  N ++  
Sbjct: 1556 EPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPAAWGSTDAAAWGSSDKNNSETE 1615

Query: 3788 PERAGVDSSNS---------------GGDAVTLE----IEEDKKSAI----TKSRDFPKD 3898
             + A   S N                G  + T E     E+D+   +    TKSR+    
Sbjct: 1616 SDAAAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDK 1675

Query: 3899 LQPQWG-ARKRFSDNGDSNGSPRGWGSSNNADWKNKRS---RPPKPMDNSGGTGLFTKTR 4066
             + QWG   K+F  +G       GW +   ADWK  R+   RPP+  DN     +FT TR
Sbjct: 1676 ERSQWGNPAKKFPSSG-------GWSNGGGADWKGNRNHTPRPPRSEDNL--APMFTATR 1726

Query: 4067 QRLDLFTAEEQDILADVEPIIETVTRIKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKDI 4246
            QRLD FT+EEQ++L+DVEP++ T+ +I + + Y DGDP+S DD++F+++ +LN HP K+ 
Sbjct: 1727 QRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKET 1786

Query: 4247 KIGAGIDYIMISKHASFPDSRCFYVVSSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAKY 4426
            K+G+G+D+I + KH  F DSRCF+VVS+DG KQDFSYRKSL N++  KYPD+AE F+ KY
Sbjct: 1787 KLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKY 1846

Query: 4427 LRKSQSRPGWNRDR 4468
              K   RP  NRDR
Sbjct: 1847 FTK--PRPSGNRDR 1858


>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
          Length = 1976

 Score = 1315 bits (3403), Expect = 0.0
 Identities = 752/1574 (47%), Positives = 983/1574 (62%), Gaps = 85/1574 (5%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGD Y+ VNE+G+P EIAQRITFEERVS HN  YLQKLVD KLCL+Y  G
Sbjct: 319  GSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCLSYTQG 378

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             +TYSLR+GSKGHT L+PGQVVHRR+MDGD+VFINRPPTTHKHSLQAL VY+H+D+TVKI
Sbjct: 379  STTYSLRDGSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKI 438

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPL+C PLSADFDGDC+HLFYPQSLSA+AEV+ELFSVEKQLLSSHTG   LQ+ +DSLLS
Sbjct: 439  NPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLS 498

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            L++M ++ F  + TA+QLAM+    LP  A+ KSSKS   WTV Q+LQ A P    C GD
Sbjct: 499  LRVMLERVFLDKATAQQLAMYGSLSLPPPALRKSSKSGPAWTVFQILQLAFPERLSCKGD 558

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            R+L   S+++K +F  D   SI  +IVTSI   KGPKE + FFD L PLLME+L+ EGFS
Sbjct: 559  RFLVDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFS 618

Query: 902  VCLEDFYIPKNALKDVEASLQI--VSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVL 1075
            + LED  + + A  DV  +L I  +SP++  L+ +  +  +LQLEN +  VK   +NF+L
Sbjct: 619  LSLEDLSMSR-ADMDVIHNLIIREISPMVSRLRLSYRD--ELQLENSIHKVKEVAANFML 675

Query: 1076 KSSAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTGTY 1255
            KS +I  L+D KS+SA++K+VQQ GFLG+Q+SDK KFYTK LV+D+A     KY    + 
Sbjct: 676  KSYSIRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKTLVEDMAIFCKRKYGRISS- 734

Query: 1256 PSEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICY 1435
             S  FG+V+ C FHGLDPY+EM HSI++REVIVRS+RGL EPGTLFKNLMA+LRD+VI  
Sbjct: 735  -SGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITN 793

Query: 1436 DGTVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXX 1615
            DGTVRN CSNS IQF+YGV+        F AGEPVGVLAATAMSNPAYKAVLD       
Sbjct: 794  DGTVRNTCSNSXIQFKYGVDSERGHQGLFEAGEPVGVLAATAMSNPAYKAVLDSSPNSNS 853

Query: 1616 XWEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAE 1795
             WE+MKE+LLC V+F+N T+DRRVILYLN+C CG+++C+ENAA  V+N L K+SLK+ A 
Sbjct: 854  SWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKDTAV 913

Query: 1796 ELLIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSF--RKKK 1969
            E L+EY+    + E   +D+ L GH+HLN+ LL+  NISM D+  KCED INS   +KKK
Sbjct: 914  EFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKK 973

Query: 1970 KDGYLFKRILLAAXXXXXXXXXXXXXXXD--CLKFIWQDTSNYKLEEISHILVDTICPVL 2143
            K    FKR  L+                D  CL F +  T +  LE    +L +T+ PVL
Sbjct: 974  KATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTFSYNAT-DPDLERTLDVLCNTVYPVL 1032

Query: 2144 LGTIIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVM 2323
            L  +IKGD R+ + +IIW + D  TWIR+   SR+GE  LDV +EK AVKQ+GD WRVV+
Sbjct: 1033 LEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWRVVI 1092

Query: 2324 DCCLPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLA 2503
            D CL V+ LIDTKRSIPY++KQVQELLG+SCAFEQAVQRLS SV MV+KGVLK+H++LLA
Sbjct: 1093 DSCLSVLHLIDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLA 1152

Query: 2504 NSMTYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVAS 2683
            N+MT SG ++GFN GG KAL+RSLN++ PFTEATL APRKCFE+AAEKCH D+LS+VV S
Sbjct: 1153 NNMTCSGTMLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCHTDSLSTVVGS 1212

Query: 2684 CAWGKQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEID 2863
            C+WGK+V VG+GS F++L + ++  L+  +  DVY FL +V S+ N +   +S       
Sbjct: 1213 CSWGKRVDVGTGSQFELLWNQKETGLDDKEETDVYSFLQMVISTTNADAFVSS------P 1266

Query: 2864 NLDLEDESIGN-DMSPLRDSE--KPIFEDGMEFEDNQGELGWEKDSSLTAKSSAGWGEAI 3034
              D+ +E +     SP RDS   +P FED  +F++   E    K S    + S+ W    
Sbjct: 1267 GFDVTEEEMAEWAESPERDSALGEPKFEDSADFQNLHDE---GKPSGANWEKSSSW---- 1319

Query: 3035 DKAANGGWDQAIDKASGG------GWDQAIDKASGGGWD--------QSVDKSSSGG-W- 3166
            D   +GG +  + K++GG       W++  +      W         Q   KS SGG W 
Sbjct: 1320 DNGCSGGSEWGVSKSTGGEANPESNWEKTTNVEKEDAWSSWNTRKDAQESSKSDSGGAWG 1379

Query: 3167 ----DQTINRVQNVDAGPKVSDSAWPGWTNSDVGKESGFSKRAEESPGVSDWGSEER-XX 3331
                D   +   N +  P   DS  P   N       G    +++S    +WG+E     
Sbjct: 1380 IKTKDADADTTPNWETSPAPKDSIVPE-NNEPTSDVWGHKSVSDKSWDKKNWGTESAPAA 1438

Query: 3332 XXXXXXXXXXXXXKVDFERESPLTAKSS---------------GSWDLAADRARDTGAGK 3466
                         K + E ES   A  S               G W+  +      GA  
Sbjct: 1439 WGSTDAAVWGSSDKKNSETESDAAAWGSRDKNNSDVGSGAGVLGPWNKKSSETESNGATW 1498

Query: 3467 GLD-------SAWSSW--ANAEVGNE----GGFSKRLQEDSPSFCEWVAKEPQXXXXXXX 3607
            G         +AW+SW   N E  +E    G   K+  E       W A + +       
Sbjct: 1499 GSSDKTKSGAAAWNSWDKKNIETDSEPAAWGSQGKKNSETESGPAAWGAWDKK---KSET 1555

Query: 3608 XXXXXXXXVDSQRDSSSNAKSSGTGDVADEKVENVWAKATSKNSGWSKWGSNAVNKNDDL 3787
                    +  +++S +    +  G+   +K +     A   ++  + WGS+  N ++  
Sbjct: 1556 EPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPAAWGSTDAAAWGSSDKNNSETE 1615

Query: 3788 PERAGVDSSNS---------------GGDAVTLE----IEEDKKSAI----TKSRDFPKD 3898
             + A   S N                G  + T E     E+D+   +    TKSR+    
Sbjct: 1616 SDAAAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDDRNPWVSLKETKSREKDDK 1675

Query: 3899 LQPQWG-ARKRFSDNGDSNGSPRGWGSSNNADWKNKRS---RPPKPMDNSGGTGLFTKTR 4066
             + QWG   K+F  +G       GW +   ADWK  R+   RPP+  DN     +FT TR
Sbjct: 1676 ERSQWGNPAKKFPSSG-------GWSNGGGADWKGNRNHTPRPPRSEDNL--APMFTATR 1726

Query: 4067 QRLDLFTAEEQDILADVEPIIETVTRIKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKDI 4246
            QRLD FT+EEQ++L+DVEP++ T+ +I + + Y DGDP+S DD++F+++ +LN HP K+ 
Sbjct: 1727 QRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKET 1786

Query: 4247 KIGAGIDYIMISKHASFPDSRCFYVVSSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAKY 4426
            K+G+G+D+I + KH  F DSRCF+VVS+DG KQDFSYRKSL N++  KYPD+AE F+ KY
Sbjct: 1787 KLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKY 1846

Query: 4427 LRKSQSRPGWNRDR 4468
              K   RP  NRDR
Sbjct: 1847 FTK--PRPSGNRDR 1858


>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
            vesca subsp. vesca]
          Length = 1991

 Score = 1307 bits (3383), Expect = 0.0
 Identities = 702/1298 (54%), Positives = 891/1298 (68%), Gaps = 32/1298 (2%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSR+VITGD Y+ VNE+G+P +IAQRITFEE+V+ HNI  LQ+LVD KLCLTY DG
Sbjct: 318  GSGFSSRTVITGDAYRRVNEVGIPYDIAQRITFEEKVNAHNIRRLQELVDSKLCLTYSDG 377

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             STYSLREGSKGHTFL+PGQVVHRRIMDGD+VF+NRPPTTHKHSLQAL VY+H+D  VKI
Sbjct: 378  SSTYSLREGSKGHTFLKPGQVVHRRIMDGDLVFVNRPPTTHKHSLQALQVYVHEDKVVKI 437

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPLICGPLSADFDGDCIHLFYPQSL+A+AEV+ELFSVEKQLLSSH+G  NLQLATDSLLS
Sbjct: 438  NPLICGPLSADFDGDCIHLFYPQSLAAKAEVMELFSVEKQLLSSHSGKPNLQLATDSLLS 497

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            LKLMFKKYFF +   +QLAMFV + LP+ A++K++ +  CWT LQ+LQTALP  F  SGD
Sbjct: 498  LKLMFKKYFFNKAAMQQLAMFVSSSLPQPALLKANSTVPCWTALQILQTALPAQFQSSGD 557

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            R+L   SE++ ++ S  +  S+  DI TSI F K  ++V+ FF+ + PLLMENL+ EGFS
Sbjct: 558  RHLVKDSEVLLLDCSTSLVPSLINDIGTSIFFEKSAEDVLSFFNSMQPLLMENLFSEGFS 617

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            V LEDF +P+ +++D++  L+ +SPLL+ +++  +E V++QLEN++R VK P+SNF+L S
Sbjct: 618  VGLEDFALPRASIQDIQKGLKEISPLLFHMRTVYNELVEMQLENHIRKVKEPVSNFILNS 677

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPS-TGTYP 1258
            SA+G L+DSKSDSA++KVVQQ+GFLG Q+ D+GK Y+K LV+DV+ L+  KYPS    YP
Sbjct: 678  SALGDLIDSKSDSAMNKVVQQVGFLGRQLYDQGKLYSKTLVEDVSSLYQNKYPSDIVDYP 737

Query: 1259 SEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYD 1438
            S +FGLV     HGLDP + M+HSI++REVIVRS+RGL+EPGTLFKNLMA LRDVVICYD
Sbjct: 738  SAEFGLVHRGFVHGLDPVEGMIHSIATREVIVRSSRGLSEPGTLFKNLMATLRDVVICYD 797

Query: 1439 GTVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXXX 1618
            GTVRNVCSNSIIQFEYGV  G    + F AGEPVGVLAATAMSNPAYKAVLD        
Sbjct: 798  GTVRNVCSNSIIQFEYGVKSGSGPENLFPAGEPVGVLAATAMSNPAYKAVLDSTPSSNSS 857

Query: 1619 WEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAEE 1798
            W++MKEILLC V+FKN+  DRRV+LYLNDCGCGRKYCRE+AAY+VKN L+K+SLK+ A E
Sbjct: 858  WDLMKEILLCKVNFKNELIDRRVVLYLNDCGCGRKYCREHAAYLVKNRLKKVSLKDTAVE 917

Query: 1799 LLIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSFRKKK--- 1969
             +IEY+   A   S E+D+GL+GH+HLNEMLL+  N+ M+++L KCE+ INSFR+KK   
Sbjct: 918  FMIEYQKERA-AGSMEIDSGLVGHVHLNEMLLRELNLGMSEILQKCEETINSFRRKKVGK 976

Query: 1970 --KDGYLFKRILL--AAXXXXXXXXXXXXXXXDCLKFIWQDTSNYKLEEISHILVDTICP 2137
                G +FKR +L  +                 CL F +QD +N +LE IS +L D ICP
Sbjct: 977  KMNIGEIFKRTILSYSECCSFHQSSADNRSGSPCLMFFYQDFNNSELEAISQMLADFICP 1036

Query: 2138 VLLGTIIKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRV 2317
            VLL T+IKGDPR+S+ +IIWIN ++ TWIRSP KS KGELALDV++EK  VKQ+GD WR+
Sbjct: 1037 VLLKTVIKGDPRISSANIIWINSESTTWIRSPNKSLKGELALDVVLEKSVVKQSGDAWRI 1096

Query: 2318 VMDCCLPVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVL 2497
             +DCCLPV+ LIDT+RSIPYAIKQVQELLG+SCAF+QAVQRL+ +V MV KGVLK+HL+L
Sbjct: 1097 ALDCCLPVLHLIDTRRSIPYAIKQVQELLGVSCAFDQAVQRLAKAVAMVAKGVLKEHLIL 1156

Query: 2498 LANSMTYSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVV 2677
            LANSMT +GN +GFN GG KALSR+LN+QVPFTEATLF P+KCFERAAEKCH+D+LSS+V
Sbjct: 1157 LANSMTCAGNFVGFNPGGYKALSRALNIQVPFTEATLFTPKKCFERAAEKCHMDSLSSIV 1216

Query: 2678 ASCAWGKQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAE 2857
            ASC+WGK VAVG+GS F+IL DT++  LN+  GVDV++FLH+V ++ NGEE  T+ +G E
Sbjct: 1217 ASCSWGKHVAVGTGSRFEILWDTKEGGLNEVGGVDVFNFLHMVNAA-NGEELTTAALGTE 1275

Query: 2858 IDNLDLEDESIGNDMSPLRD--SEKPIFEDGMEFEDN----QGELGWEKDSSLTAKSSA- 3016
            ID+L  + E+    +SP  +  S+KP+FED +EF DN     G+  W  DS  TA +   
Sbjct: 1276 IDDLVPDYENGDVSLSPEHNSSSDKPVFEDIVEFPDNFENVPGKSSW--DSIYTASTGGK 1333

Query: 3017 GWGEAIDKAANGGWDQAIDKASGGGW---DQAIDKASGGGWDQSVDKSSSGGW-DQTINR 3184
             WG A+      G        S   W       D  S  G  ++  + +   W  +T+  
Sbjct: 1334 DWG-AVKIGTQDGISAETQADSTSAWGIKTPREDDTSPWGTAKTATEDAPSAWGTKTVKE 1392

Query: 3185 VQNVDAGPKVS-DSAWPGWTNSDVGKESGFSKRAEESPGVSDWGSEERXXXXXXXXXXXX 3361
                  G K + + A   W  +    E   S  A E    S WG+ +             
Sbjct: 1393 DAPSAWGIKTAREDARSPWGTAKTATEDASSATARED-APSPWGTAKTATGDALSAWGTK 1451

Query: 3362 XXXKVDFERESPLTAK--SSGSWDLAADRARDTGAGKGLDSAWSS----WANAEVGNEGG 3523
               +         T +  +   W  A     D  A  G  SA       W  A+   E  
Sbjct: 1452 TLKEDAPSAWGTKTVREDAPSPWGTAKRATEDAPAAWGAKSATEDAPPPWGTAKTAAEDA 1511

Query: 3524 FS----KRLQEDSPSFCEW-VAKEPQXXXXXXXXXXXXXXXVDSQRDSSSNA-KSSGTGD 3685
             S    K +++D+ S  E   A E                  +   DS +    +SG G 
Sbjct: 1512 PSAWGVKAVKKDASSPWETKTATEDATTAWGRNNEKKHVLTAEVLEDSKAREDATSGWGT 1571

Query: 3686 VADEKVENVWAKATSKNSGWSKWGSNAVNKNDDLPERA 3799
               E  ++ W  +T   +GWS  G + V   D   ++A
Sbjct: 1572 ENAENAQSTWRTSTESENGWSGRGGSKVESTDVQSQKA 1609



 Score =  207 bits (526), Expect = 5e-50
 Identities = 159/543 (29%), Positives = 245/543 (45%), Gaps = 21/543 (3%)
 Frame = +2

Query: 2882 ESIGNDMSPLRDSEKPIFED-----GMEFEDNQGELGWEKDSSLTAKSSAGWGEAIDK-- 3040
            +S   D  P   + K   ED     G++         WE  ++ T  ++  WG   +K  
Sbjct: 1491 KSATEDAPPPWGTAKTAAEDAPSAWGVKAVKKDASSPWETKTA-TEDATTAWGRNNEKKH 1549

Query: 3041 --AANGGWDQAIDKASGGGWDQAIDKASGGGWDQSVDKSSSGGWD-QTINRVQNVDAGPK 3211
               A    D    + +  GW     + +   W  S +  S  GW  +  ++V++ D   +
Sbjct: 1550 VLTAEVLEDSKAREDATSGWGTENAENAQSTWRTSTE--SENGWSGRGGSKVESTDVQSQ 1607

Query: 3212 VSDSAWPGWTNSDVGKESGFSKRAEESPGVSDWGSEERXXXXXXXXXXXXXXXKVDFERE 3391
             +     GW +   G     ++ A    G+   GSE++               K     +
Sbjct: 1608 KAVENPKGWNDFSAGVRKPQTENAGSGWGMK--GSEKKGDIELEQDESTRHSWK-----Q 1660

Query: 3392 SPLTAKSSGSWDLAADRARDTGAGKGLDSAWSSWANAEVGNEGGFSKRLQEDSPSFCE-- 3565
                A S G+W+    ++ DT  G      W    +AE+ + G +    Q+ SP   +  
Sbjct: 1661 KSADASSQGAWE--RQKSPDTSKG-----TWEQPKSAEMSH-GAWG---QQKSPDVSQGV 1709

Query: 3566 WVAKEPQXXXXXXXXXXXXXXXVDSQRDSSSNAKSSGTGDVADEKVENVWAKATSKNSGW 3745
            W  ++P                      +S+N++ S     + E  +  W + TS +   
Sbjct: 1710 WGLEKP----------------------ASTNSQGSWGQQKSPEIPQGNWGQQTSPDISQ 1747

Query: 3746 SKWGSNAVNKNDDLPERAGVDSSNSGGDAVTLEIEEDKKSAITKSRDFPKDLQPQWGARK 3925
              WG     K+ ++ + +      S         + D +S     R        QWG   
Sbjct: 1748 GTWGQQ---KSPEMSQGSWGQQKPSDTSQPATVNQWDSQSEAAVER------HQQWG--- 1795

Query: 3926 RFSDNGDSNGSPR-----GWGSSNNADWKNKRSRPPKPM----DNSGGTGLFTKTRQRLD 4078
                NGDSN   R      WG  N  +WK K SRP K      D+S    ++T TRQRLD
Sbjct: 1796 ---HNGDSNKRKRFEGGRSWGP-NAGEWKGKNSRPAKSPGMVNDDSSVAAIYTATRQRLD 1851

Query: 4079 LFTAEEQDILADVEPIIETVTRIKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKDIKIGA 4258
            +FT+EEQD+L+ +EP + ++ RI +Q+GYNDGD LSA+D SFI+D V N HP+K+ K+G+
Sbjct: 1852 IFTSEEQDVLSHIEPTMLSIRRIMHQSGYNDGDQLSAEDHSFILDKVFNFHPEKEAKMGS 1911

Query: 4259 GIDYIMISKHASFPDSRCFYVVSSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAKYLRKS 4438
            GIDY  + +H SF +SRC +V+S+DG K+DFSYRK L+N IK KYP+ AEAF  KY  + 
Sbjct: 1912 GIDYFTVDRHGSFQESRCLFVISTDGRKEDFSYRKCLQNMIKEKYPELAEAFNDKYFSRP 1971

Query: 4439 QSR 4447
            + R
Sbjct: 1972 RPR 1974


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score = 1281 bits (3314), Expect = 0.0
 Identities = 723/1437 (50%), Positives = 924/1437 (64%), Gaps = 68/1437 (4%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSRSVITGD YK VNE+G+P EIA+ ITFEE+VS HN++YLQ+LVD KLCLTY+DG
Sbjct: 325  GSGFSSRSVITGDAYKAVNEVGIPYEIARWITFEEKVSSHNMKYLQELVDNKLCLTYKDG 384

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             STYSLREGSKGHTFL+ GQVVHRRIMDGD+VFINRPPTTHKHSLQAL VY+H+D+TVKI
Sbjct: 385  SSTYSLREGSKGHTFLKLGQVVHRRIMDGDIVFINRPPTTHKHSLQALRVYVHEDNTVKI 444

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPLICGPLSADFDGDC+HLFYPQS +A+AEVLELFS+EKQ+LSSH+G   LQLA DSLLS
Sbjct: 445  NPLICGPLSADFDGDCVHLFYPQSPAAKAEVLELFSLEKQILSSHSGGMILQLACDSLLS 504

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            LK+MFK YF  +  A+QL MF  + LP+ A   +      WT LQ+LQTALP S DC GD
Sbjct: 505  LKIMFKTYFMDKIAAQQLVMFASSSLPQPAFWLTHSGDPFWTALQVLQTALPTSLDCYGD 564

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            R+L   S+++ ++F+RDV  S+  DI  SI   KG +EV+KFF+ L PLLMEN++ +GFS
Sbjct: 565  RFLIKGSDILVLDFNRDV--SVINDIGASICSEKGSEEVLKFFNALQPLLMENIFAQGFS 622

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            V LEDF I +  +K++   +Q++SPLLY L+ST +E V+LQLEN +R  K P++NF+LKS
Sbjct: 623  VGLEDFSISQEVIKNITKDIQLISPLLYHLRSTYNELVELQLENQIRFAKAPVTNFILKS 682

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMKYPSTGTYPS 1261
            S++G L+D KSDSA++KVVQQIGFLG+QISD+GKFY+K LV+DV+ L+  KYP    YPS
Sbjct: 683  SSMGNLIDPKSDSAINKVVQQIGFLGLQISDRGKFYSKTLVEDVSCLYTRKYPENVDYPS 742

Query: 1262 EQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICYDG 1441
             + GL+RSC FHGLDPY+E+VHSIS+REVIVRS+RGLTEPGTLFKNLMAILRDVVICYDG
Sbjct: 743  AEHGLIRSCFFHGLDPYEEIVHSISTREVIVRSSRGLTEPGTLFKNLMAILRDVVICYDG 802

Query: 1442 TVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXXXW 1621
            TVRNVCSNSIIQFEYG  +G   N  + AGEPVGVLAATAMSNPAYKAVLD        W
Sbjct: 803  TVRNVCSNSIIQFEYG--RGSARNL-YPAGEPVGVLAATAMSNPAYKAVLDSSPSSNSSW 859

Query: 1622 EMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAEEL 1801
            E+MKEILLC   F+N+  DRRVILYLN CGCGRKYCRE A Y+V+N L+K+SLK+ A E 
Sbjct: 860  ELMKEILLCKAIFRNELIDRRVILYLNHCGCGRKYCREQATYLVQNQLKKVSLKDTAVEF 919

Query: 1802 LIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSFRKKKKDGY 1981
            +IEYK   +   + +++ GL+GH+HLNE+LLK  +I MN++L KCE+ INS RKKK   +
Sbjct: 920  MIEYK-NQSSFSAVDMNAGLVGHIHLNEVLLKEMDIGMNEILQKCEEAINSVRKKKLGKH 978

Query: 1982 LFKRIL-LAAXXXXXXXXXXXXXXXDCLKFIWQDTSNYKLEEISHILVDTICPVLLGTII 2158
            L K +L ++                 CL    ++  N  LEE S IL D+ICP LL TII
Sbjct: 979  LKKAVLSVSECCTFHKSGLDGTSEFPCLLISIRENMNDTLEESSKILADSICPFLLETII 1038

Query: 2159 KGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVMDCCLP 2338
            KGD R+S+  I W++ DT T IRSP  S  GELA+DV+++K A+K++GD WR+V+D CLP
Sbjct: 1039 KGDSRISSAKITWLSSDT-TSIRSPQNSDMGELAVDVVLDKSAIKRSGDAWRIVIDSCLP 1097

Query: 2339 VIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLANSMTY 2518
            V+ LIDT+RSIPY IKQ+QELLGISCAF+QAVQRLSTSV+MV+KGVLK+HL+LLANSMTY
Sbjct: 1098 VLHLIDTRRSIPYGIKQIQELLGISCAFDQAVQRLSTSVSMVSKGVLKEHLILLANSMTY 1157

Query: 2519 SGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVASCAWGK 2698
            +GNLIGFN GG KAL+RSLNVQVPFTEATL  P++CFERAAEKCHVD+L+S+VASC+WGK
Sbjct: 1158 AGNLIGFNSGGYKALTRSLNVQVPFTEATLITPKRCFERAAEKCHVDSLTSIVASCSWGK 1217

Query: 2699 QVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEIDNLDLE 2878
             VAVG+GS FDIL DTRK+E NQ  GVDV +FLH+V S+  GEE  T+C+G EID+L   
Sbjct: 1218 HVAVGTGSRFDILWDTRKVEFNQAGGVDVNNFLHMV-STAYGEEASTACLGEEIDDLMPG 1276

Query: 2879 DESIGNDMSPLR-DSEKPIFEDGMEFEDNQ-----GELGWEKDSSLTAKSSAG--WGE-- 3028
            D+     +SP   +S++P+FED  EF+D       G+  W+  SS  + SS+G  WG   
Sbjct: 1277 DDIAELCLSPENFNSDRPVFEDIDEFQDISEKDLPGKSSWDNLSSFRSGSSSGKEWGSNN 1336

Query: 3029 ----AIDKAANGGW----DQAIDKASG---GGWDQAIDKASGGGWDQSVDKSSSGG---- 3163
                  D  ++ G     +Q +  + G     W    +  + G  +    KS   G    
Sbjct: 1337 NVGTKYDVGSSWGTANKEEQEVIPSKGEPDNSWSNGWENKNSGRMELETMKSDWRGDADE 1396

Query: 3164 ------------------WDQTINRVQNVDAGPKVSDSAWPGWTNSDVGKESGFSKRAEE 3289
                              WD T     N  A  KVS S   GW + ++   +G+SK   +
Sbjct: 1397 RHNPFSSKPQESSKRSDVWDATPGWGTNT-ASEKVSSST--GWNSENISSGAGWSKADSD 1453

Query: 3290 SPGVSDWGSEERXXXXXXXXXXXXXXXKVDFERESPLTAKSSGSWDLAADRARDTGAGKG 3469
            +     W SE                    ++ E+     S   W  A     D    KG
Sbjct: 1454 NSHAKGWNSENISSGAGWSKAGSDNSHAKGWKSEN---ISSGAGWSKADS---DNSHAKG 1507

Query: 3470 LDSAWSSWANAEVGNEGGFSKRLQEDSPSFCEWVAKEPQXXXXXXXXXXXXXXXVDSQRD 3649
                   W +  + +  G+SK   ++S     W ++                    S+ D
Sbjct: 1508 -------WNSENISSGAGWSKAGSDNSSHAKGWNSENISSGAGW------------SKAD 1548

Query: 3650 S-SSNAKSSGTGDVADEKVENVWAKATSKNSGWSKWGSNAVNKNDDLPERAGVDSSNSGG 3826
            S +S+AK   + +++       W+KA S NS    W S  ++      +    +SS++ G
Sbjct: 1549 SDNSHAKGWNSENISSGA---GWSKAGSDNSHAKGWNSENISSGAGWSKAGSDNSSHAKG 1605

Query: 3827 DAVTLEIEEDKKSAITKSRDFPKDLQPQWGARK-----RFSDNGDSNGSPRGWGSSN--- 3982
                   E     A     D        W +        +S  G  N   +GW S N   
Sbjct: 1606 ----WNSENISSGAGWSKEDSDNSHAKGWNSENISSGAGWSKAGSDNSHAKGWNSENISS 1661

Query: 3983 ---------------NADWKNKRSRPPKPMDNSGGTGLFTKTRQRLDLFTAEEQDIL 4108
                           + DW N  S   K M  +  +G   +  ++ D+ + + Q  L
Sbjct: 1662 GARWSKADSDNTHAKSTDW-NTTSDRTKTMTKNTWSGWHGEKSEKEDILSTKSQQDL 1717



 Score =  257 bits (656), Expect = 4e-65
 Identities = 184/565 (32%), Positives = 280/565 (49%), Gaps = 35/565 (6%)
 Frame = +2

Query: 2942 GMEFEDNQGELGWEK---DSSLTAK--------SSAGWGEA-IDKAANGGWDQAIDKASG 3085
            G   E+     GW K   D+S  AK        S AGW +A  D +   GW+   + +SG
Sbjct: 1507 GWNSENISSGAGWSKAGSDNSSHAKGWNSENISSGAGWSKADSDNSHAKGWNSE-NISSG 1565

Query: 3086 GGWDQA-IDKASGGGWDQSVDKSSSGGWDQTIN---------RVQNVDAGPKVS-----D 3220
             GW +A  D +   GW+ S + SS  GW +  +           +N+ +G   S     +
Sbjct: 1566 AGWSKAGSDNSHAKGWN-SENISSGAGWSKAGSDNSSHAKGWNSENISSGAGWSKEDSDN 1624

Query: 3221 SAWPGWTNSDVGKESGFSKRAEESPGVSDWGSEERXXXXXXXXXXXXXXXKVDFERESPL 3400
            S   GW + ++   +G+SK   ++     W SE                     + +S  
Sbjct: 1625 SHAKGWNSENISSGAGWSKAGSDNSHAKGWNSENISSGARWS------------KADSDN 1672

Query: 3401 TAKSSGSWDLAADRARDTGAGKGLDSAWSSWANAEVGNEGGFSKRLQEDSPSFCEWVAKE 3580
            T   S  W+  +DR +         + WS W   +   E   S + Q+D P   +W A  
Sbjct: 1673 THAKSTDWNTTSDRTKTM-----TKNTWSGWHGEKSEKEDILSTKSQQDLPRNSDWGAVS 1727

Query: 3581 PQXXXXXXXXXXXXXXXVDSQRDSSSNAKSSGTGDVADEKVENVWAKATSKNSGWSKWGS 3760
             +                D       +        +  +K  + W   +S + GW+K  +
Sbjct: 1728 NRENNAERAYEFVSK---DQPLPDQVSEPCDWDNKLTPQKAVSGWL--SSNDEGWTKDAN 1782

Query: 3761 NAVNKNDDLPERAGVDSSNSGGDAVTLEIEEDKKSA-----ITKSRDFPKDLQPQWGARK 3925
            ++  K    P  + V   NS     + EI ++ +SA     + ++ D  +  +P    +K
Sbjct: 1783 SSERKE---PTDSPV-VYNSWEKRTSSEISQNVESASFNSWLPRAGDGGEVEKPNEWVKK 1838

Query: 3926 RFSDNGDSNGSPRGWGSSNNADWKNKRSRPPK-PMDNSGGTG--LFTKTRQRLDLFTAEE 4096
              S   +   +  GWGS ++ DWK K++ P K P  N+  T   LFT+TRQRLDLFT+EE
Sbjct: 1839 SGSFKKNHGETSGGWGS-DSGDWKIKKNHPGKFPRMNNDNTSVRLFTETRQRLDLFTSEE 1897

Query: 4097 QDILADVEPIIETVTRIKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKDIKIGAGIDYIM 4276
            QD L+ +EP ++++ RI +++GYNDGDP+  +DQSFI+DNV N+HPDK  K+G+GID++M
Sbjct: 1898 QDALSLIEPTMKSIRRIMHKSGYNDGDPIRPEDQSFIIDNVFNYHPDKAAKMGSGIDHLM 1957

Query: 4277 ISKHASFPDSRCFYVVSSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAKYLRKSQSRPGW 4456
            IS+H+SF DSRC YVVS+DG K+DFSYRK L N IK ++PD A+ F+ KY RK   +PG 
Sbjct: 1958 ISRHSSFQDSRCLYVVSTDGRKEDFSYRKCLGNLIKSRFPDVADEFLDKYFRK--PKPGG 2015

Query: 4457 NRDRASTPDEGGTRRWAKDSEAGTP 4531
            N+DR STP+      W  +++A TP
Sbjct: 2016 NQDRISTPEPA----W-NNTQAPTP 2035


>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
            arietinum]
          Length = 2263

 Score = 1277 bits (3304), Expect = 0.0
 Identities = 683/1354 (50%), Positives = 892/1354 (65%), Gaps = 22/1354 (1%)
 Frame = +2

Query: 2    GSGFSSRSVITGDPYKGVNEIGLPCEIAQRITFEERVSQHNIEYLQKLVDKKLCLTYRDG 181
            GSGFSSR+VITGD YK +NE+G+P E+AQRITFEERVS HNI YLQKLVD+ +CLTY++G
Sbjct: 323  GSGFSSRNVITGDGYKKINEVGIPLEVAQRITFEERVSIHNIRYLQKLVDENMCLTYKEG 382

Query: 182  FSTYSLREGSKGHTFLRPGQVVHRRIMDGDMVFINRPPTTHKHSLQALSVYIHDDHTVKI 361
             STYSLREGSKGHT+L+PGQ+VHRRIMDGD+VFINRPPTTHKHSLQAL VYIHDDHTVKI
Sbjct: 383  VSTYSLREGSKGHTYLKPGQIVHRRIMDGDVVFINRPPTTHKHSLQALVVYIHDDHTVKI 442

Query: 362  NPLICGPLSADFDGDCIHLFYPQSLSARAEVLELFSVEKQLLSSHTGNFNLQLATDSLLS 541
            NPLICGPL ADFDGDC+HLFYPQSL+A+AEVLELFSVEKQLLSSH+GN NLQL+TDSLLS
Sbjct: 443  NPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLSTDSLLS 502

Query: 542  LKLMFKKYFFGRETAEQLAMFVPALLPRSAVIKSSKSQACWTVLQLLQTALPPSFDCSGD 721
            LK++ K  F  R  A Q+AMF+   LP  A+ K+    + WT +Q+LQ ALP SFDC+G 
Sbjct: 503  LKMLVKSCFLDRAAANQMAMFLSLPLPMPALFKAGSGDSYWTSVQMLQCALPSSFDCTGG 562

Query: 722  RYLTYKSEMVKVEFSRDVAQSIFIDIVTSILFSKGPKEVIKFFDYLTPLLMENLYMEGFS 901
            RYL  + E+++ +F+RD+  SI  ++  SI FS+GPKE + FFD L P LMEN++  G+S
Sbjct: 563  RYLIRQREILEFDFTRDLLPSIINEVAASIFFSQGPKEALNFFDVLQPFLMENIFAHGYS 622

Query: 902  VCLEDFYIPKNALKDVEASLQIVSPLLYFLQSTQSESVQLQLENYLRGVKLPISNFVLKS 1081
            V L+DF I +   + +  S+  +SPLL+ L+    E V  QLE +++ ++LP+ NF LKS
Sbjct: 623  VGLQDFSISRAVKRVINRSIGKISPLLHQLRVVYKELVAQQLEKHMQDIELPVINFALKS 682

Query: 1082 SAIGCLVDSKSDSALSKVVQQIGFLGMQISDKGKFYTKMLVKDVAELFHMK--YPSTGTY 1255
            + +G L+DSKS SAL KVVQQIGFLG Q+ ++GKFY+K LV+DV   FH+K  Y   G Y
Sbjct: 683  TKLGDLIDSKSKSALDKVVQQIGFLGQQLFERGKFYSKGLVEDVGSHFHVKCFYDGDG-Y 741

Query: 1256 PSEQFGLVRSCLFHGLDPYQEMVHSISSREVIVRSTRGLTEPGTLFKNLMAILRDVVICY 1435
            PS +FGL++ C FHGLDPY+E+VHSI++RE+IVRS+RGL+EPGTLFKNLMAILRDVVICY
Sbjct: 742  PSAEFGLLKGCFFHGLDPYEELVHSIATREIIVRSSRGLSEPGTLFKNLMAILRDVVICY 801

Query: 1436 DGTVRNVCSNSIIQFEYGVNQGMPDNSEFGAGEPVGVLAATAMSNPAYKAVLDXXXXXXX 1615
            DGTVRNVCSNSIIQFEYG+  G      F AGEPVGVLAAT+MSNPAYKAVLD       
Sbjct: 802  DGTVRNVCSNSIIQFEYGIQSGDKSQPLFPAGEPVGVLAATSMSNPAYKAVLDASPSSNS 861

Query: 1616 XWEMMKEILLCGVSFKNDTSDRRVILYLNDCGCGRKYCRENAAYVVKNHLRKISLKEAAE 1795
             WE MKEILLC V+F+N+ +DRRVILYLNDC CGR YCRENAAY+VKN LRK+SLK+AA 
Sbjct: 862  SWEFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRSYCRENAAYLVKNQLRKVSLKDAAL 921

Query: 1796 ELLIEYKPTHAVVESSELDTGLIGHLHLNEMLLKGSNISMNDVLAKCEDKINSFRKKKKD 1975
            +  +EY+      + SE D GL+GH+HLNE +L+   I+M++V  KC++++NSF +KKK 
Sbjct: 922  DFTVEYQQQRRRNDGSE-DAGLVGHIHLNEAMLEKLKINMSEVYQKCQERLNSFSRKKKV 980

Query: 1976 GYLFKRILLAAXXXXXXXXXXXXXXXDCLKFIWQDTSNYKLEEISHILVDTICPVLLGTI 2155
             + F++  L                  C+  +W D  +  L++ + +L D ICPVLL TI
Sbjct: 981  FHFFRKTEL----FFSESCSSLNSSAPCVTILWPDGDD--LDQTTKVLADMICPVLLDTI 1034

Query: 2156 IKGDPRVSNVDIIWINPDTPTWIRSPCKSRKGELALDVIIEKDAVKQTGDPWRVVMDCCL 2335
            I+GDPR+S+ +IIW+NP T TW+R+P KS  GELALDVI+EK+AVKQ+GD WR+++D CL
Sbjct: 1035 IQGDPRISSANIIWVNPGTNTWVRNPSKSSNGELALDVILEKEAVKQSGDAWRIILDSCL 1094

Query: 2336 PVIDLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTSVTMVTKGVLKDHLVLLANSMT 2515
            PV+ LIDT+RS PYAIKQ+QELLGISC F+QA+QRL+ SV MV KGVL++HL+LLA+SMT
Sbjct: 1095 PVLHLIDTRRSTPYAIKQIQELLGISCTFDQAIQRLAASVRMVAKGVLREHLILLASSMT 1154

Query: 2516 YSGNLIGFNMGGIKALSRSLNVQVPFTEATLFAPRKCFERAAEKCHVDNLSSVVASCAWG 2695
              GNL+GFN GG K L+R LN+QVPFT+ATLF PRKCFERAAEK H D+LSS+VASC+WG
Sbjct: 1155 CGGNLVGFNTGGYKTLARQLNIQVPFTDATLFTPRKCFERAAEKRHADSLSSIVASCSWG 1214

Query: 2696 KQVAVGSGSAFDILLDTRKIELNQPDGVDVYDFLHLVRSSLNGEETDTSCIGAEIDNLDL 2875
            K VAVG+GS FDI+ D ++++ N+ +G+DVY+FL++V+   NG+E + +C+G +ID+L L
Sbjct: 1215 KHVAVGTGSRFDIVWDPKEVKSNEIEGMDVYNFLNMVKGLANGDEENNACLGEDIDDL-L 1273

Query: 2876 EDESIGNDMSPLRDSE-KPIFEDGMEFEDNQGELGWE--KDSSLTAKSS-AGWGE----- 3028
            +D+++   MSP   S    +F++  E  +     GW+  KD + T  +  +GWG+     
Sbjct: 1274 DDDNMDWGMSPEHTSGFDAVFDESFELLNGSTSNGWDSNKDQNKTTTNDWSGWGQNKSEI 1333

Query: 3029 AIDKAANGGWDQAIDKASGGGWDQAIDKASGGGWDQSVDKSSSGGWDQTINRVQNVDAGP 3208
             +D A    W       S   W   I K          D S SG W+   N  QN D   
Sbjct: 1334 QVDVAETDQW----GSGSTQKWKADITKE---------DSSKSGAWETGTN--QNSDQ-- 1376

Query: 3209 KVSDSAWPGWTNSDVG-KESGFSKRAEESPGVSDWGSEERXXXXXXXXXXXXXXXKVDFE 3385
                   P W  +  G ++ G  K   ES      GS ++               K D  
Sbjct: 1377 -------PSWGGNKTGVQDDGVVKTQWES------GSSQK--------------LKSDIN 1409

Query: 3386 RESPLTAKSSGSWDLAADRARDTGAGKGLDSAWSSWANAEVGNEGGFSKR-----LQEDS 3550
            ++S      SG+W+ + ++  D  +     S        +   E G S++     +QE+S
Sbjct: 1410 KDS----SKSGAWEASTNQNNDQPSWGRNKSGVQDDGAVKTQWESGSSQKWKTDVIQENS 1465

Query: 3551 PSFCEWVA----KEPQXXXXXXXXXXXXXXXVDSQRDSSSNAKSSGTGDVADEKVENVWA 3718
                 W A       Q               V +Q +S S+ K        D      W 
Sbjct: 1466 SKSGAWEANTNKNSDQPSWGKNKSGIQDDGAVKTQWESGSSQKWKTDVIQEDSSKSGAWE 1525

Query: 3719 KATSKNSGWSKWGSNAVNKNDDLPERAGVDSSNSGGDAVTLEIEEDKKSAITKSRDFPKD 3898
              T+KNS    WG N     DD   +   +S +S      +  E+  K    ++      
Sbjct: 1526 ANTNKNSDPPSWGKNKSGIQDDGAVKTQWESGSSQKWKTDVIQEDSSKPGAWEANTNKNS 1585

Query: 3899 LQPQWGARKRFSDNGDSNGSPRG-WGSSNNADWK 3997
             QP WG  K    +G  +G+ +  W S ++  WK
Sbjct: 1586 DQPSWGKNK----SGIQDGAEKAQWESGSSQKWK 1615



 Score =  237 bits (604), Expect = 5e-59
 Identities = 185/588 (31%), Positives = 269/588 (45%), Gaps = 11/588 (1%)
 Frame = +2

Query: 2864 NLDLEDESIGNDMSPLRD-SEKPIFEDGMEFEDNQGELGWEKDSSLTAKSSAGWGEAIDK 3040
            N + +  S G + S ++D +EK  +E G   +   G +  ++DSS +    A   +  D+
Sbjct: 1738 NQNSDQPSWGKNKSGIQDGAEKAQWESGSSQKWKAGVV--QEDSSKSGSWGANTNQNSDQ 1795

Query: 3041 AA---NGGWDQAIDKASGGGWDQAIDKASGGGWDQSVDKSSSGGWDQTINRVQNVDAGPK 3211
            ++   N   +Q  D A    W     + SG  W+ +  +  +    Q  +   N D   K
Sbjct: 1796 SSWGRNKSGEQ--DGAERSQWASGSSQKSGA-WEANPSQKWNADLVQEDSSRSNNDES-K 1851

Query: 3212 VSDSAWPGWTNSDVGKESGFSKRAEESPGVSDWGSEERXXXXXXXXXXXXXXXKVDFERE 3391
             +   W  W +S      G SK+ +E      W S++                  D  ++
Sbjct: 1852 TNSGGWKAWGSSKTEVHEGESKKVQED----SWKSQK-------------WKAGADVTQD 1894

Query: 3392 SPLTAKSSGSWDLAADRARDTGAGKGLDSAWSSWANAEVGNEGGFSKRLQEDSPSFCEWV 3571
            SP      GSW    D      A K   + WSSW   +     G S+++QEDS S  +  
Sbjct: 1895 SP----KMGSWGATKD------ATKPKSNDWSSWGKKKDEIHDGGSEKIQEDSWSSGKRK 1944

Query: 3572 AKEPQXXXXXXXXXXXXXXXVDSQRDSSSNAKSSGTGDVADEKVENVW-AKATSKNSGWS 3748
            A+                     Q DSS     S T +   + V++ W AK    NS W 
Sbjct: 1945 AESKSVADVM-------------QEDSSK----SNTWEHKSDDVKDSWDAKVPVANSSWG 1987

Query: 3749 KWGSNAVNKNDDLPERAGVDSSNSGGDAVTLEIEEDKKSAITKSRDFPKDLQPQWG--AR 3922
            K  S   N+  D    +   +S+ G D+       D             D   QWG   R
Sbjct: 1988 KPKSQE-NQPWDSKNESNPTASSRGWDSQVASANSDS------------DKNFQWGKPGR 2034

Query: 3923 KRFSDNG--DSNGSPRGWGSSNNADWKNKR--SRPPKPMDNSGGTGLFTKTRQRLDLFTA 4090
            + F  N    S GS +GWGS N  DWKNK   +RPP P               RLDL+++
Sbjct: 2035 ESFKKNRFEGSQGS-QGWGS-NAGDWKNKNRPARPPGP---------------RLDLYSS 2077

Query: 4091 EEQDILADVEPIIETVTRIKNQTGYNDGDPLSADDQSFIVDNVLNHHPDKDIKIGAGIDY 4270
            EEQDIL D+EPI++++ RI  Q GYNDGDPL+A+DQ ++++NV  HHPDK+ K+G GID+
Sbjct: 2078 EEQDILKDIEPIVQSIRRIMQQQGYNDGDPLAAEDQQYVLENVFEHHPDKETKMGVGIDH 2137

Query: 4271 IMISKHASFPDSRCFYVVSSDGHKQDFSYRKSLENFIKGKYPDKAEAFVAKYLRKSQSRP 4450
            +M+S+H++F +SRCFYVV  DG K+DFSYRK LE+F++ KY D AE+F  KY RK + + 
Sbjct: 2138 VMVSRHSNFQESRCFYVVLKDGKKEDFSYRKCLESFVRKKYADTAESFCGKYFRKPRPK- 2196

Query: 4451 GWNRDRASTPDEGGTRRWAKDSEAGTPRWGRDPGTPGWSKDSDAGTPG 4594
                 R    + GG +      E      G    TP   + +   TPG
Sbjct: 2197 -----RDQIANSGGEQTANPGGEQTATPGGEQTTTPNGGEQTATPTPG 2239