BLASTX nr result
ID: Rauwolfia21_contig00010134
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00010134
(375 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 96 1e-25
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 102 6e-25
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 102 6e-25
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 97 8e-24
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 97 8e-24
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no... 83 6e-22
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe... 91 2e-21
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 80 5e-19
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 75 7e-19
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme... 80 2e-18
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 95 8e-18
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 95 8e-18
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 94 2e-17
ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [S... 71 1e-16
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 72 1e-16
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana] 72 1e-16
ref|XP_004288888.1| PREDICTED: probable RNA-dependent RNA polyme... 74 2e-16
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 90 3e-16
ref|XP_002883965.1| RNA-dependent RNA polymerase family protein ... 69 5e-16
ref|XP_002310028.1| hypothetical protein POPTRDRAFT_654879 [Popu... 88 1e-15
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 95.5 bits (236), Expect(2) = 1e-25
Identities = 40/89 (44%), Positives = 62/89 (69%)
Frame = +2
Query: 83 KVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLPA 262
K GK+V++P L A ++PHYM++ +CSYHSTSILG+IYD + + + EI KLP
Sbjct: 827 KSGKKVSIPHYLKANKFPHYMEKGNSCSYHSTSILGQIYDHVDSYPDEDLCITEISKLPC 886
Query: 263 FDAEVPERYLGKWRERYDKYRHEMVEALS 349
F+ E+P+R + WR RY++Y+ +M A++
Sbjct: 887 FEVEIPQRCMTLWRGRYEEYKKDMTRAMN 915
Score = 46.6 bits (109), Expect(2) = 1e-25
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +1
Query: 1 DCKNEKDSLKNKILQLIEIYYDALDAPKSGKK 96
D ++ SLK K+L LI+IYYDALDAPKSGKK
Sbjct: 800 DNVDDMHSLKGKMLHLIDIYYDALDAPKSGKK 831
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 102 bits (255), Expect(2) = 6e-25
Identities = 47/92 (51%), Positives = 64/92 (69%)
Frame = +2
Query: 80 RKVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLP 259
+K G +V VP DL E++P YM+RD + S+ STS+LG IY+ +K +++ SV EIWKLP
Sbjct: 829 KKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLP 888
Query: 260 AFDAEVPERYLGKWRERYDKYRHEMVEALSKC 355
FD VPE + KW+ YD+YR EM EA+ KC
Sbjct: 889 CFDDGVPEACMTKWKGYYDQYRWEMKEAIDKC 920
Score = 37.0 bits (84), Expect(2) = 6e-25
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 13 EKDSLKNKILQLIEIYYDALDAPK 84
EK ++K +L+LI IYYDALDAPK
Sbjct: 806 EKAAMKENMLRLINIYYDALDAPK 829
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 102 bits (255), Expect(2) = 6e-25
Identities = 47/92 (51%), Positives = 64/92 (69%)
Frame = +2
Query: 80 RKVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLP 259
+K G +V VP DL E++P YM+RD + S+ STS+LG IY+ +K +++ SV EIWKLP
Sbjct: 827 KKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSVTEIWKLP 886
Query: 260 AFDAEVPERYLGKWRERYDKYRHEMVEALSKC 355
FD VPE + KW+ YD+YR EM EA+ KC
Sbjct: 887 CFDDGVPEACMTKWKGYYDQYRWEMKEAIDKC 918
Score = 37.0 bits (84), Expect(2) = 6e-25
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 13 EKDSLKNKILQLIEIYYDALDAPK 84
EK ++K +L+LI IYYDALDAPK
Sbjct: 804 EKAAMKENMLRLINIYYDALDAPK 827
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 97.4 bits (241), Expect(2) = 8e-24
Identities = 46/97 (47%), Positives = 64/97 (65%)
Frame = +2
Query: 80 RKVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLP 259
+K G+R+ VP L AE +PH+M ++ +Y STSILG+IYDK+K ++ S ++WKLP
Sbjct: 714 KKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLP 773
Query: 260 AFDAEVPERYLGKWRERYDKYRHEMVEALSKCHDSKN 370
FD EV E YL KW+E Y +YR EM AL +S +
Sbjct: 774 CFDDEVHELYLVKWKELYGQYRKEMRNALKAGEESND 810
Score = 38.5 bits (88), Expect(2) = 8e-24
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +1
Query: 1 DCKNEKDSLKNKILQLIEIYYDALDAPKSG 90
DC E +K I LI+IYYDALDAPK G
Sbjct: 687 DCAEEIVCMKENINLLIDIYYDALDAPKKG 716
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 97.4 bits (241), Expect(2) = 8e-24
Identities = 46/97 (47%), Positives = 64/97 (65%)
Frame = +2
Query: 80 RKVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLP 259
+K G+R+ VP L AE +PH+M ++ +Y STSILG+IYDK+K ++ S ++WKLP
Sbjct: 692 KKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLP 751
Query: 260 AFDAEVPERYLGKWRERYDKYRHEMVEALSKCHDSKN 370
FD EV E YL KW+E Y +YR EM AL +S +
Sbjct: 752 CFDDEVHELYLVKWKELYGQYRKEMRNALKAGEESND 788
Score = 38.5 bits (88), Expect(2) = 8e-24
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +1
Query: 1 DCKNEKDSLKNKILQLIEIYYDALDAPKSG 90
DC E +K I LI+IYYDALDAPK G
Sbjct: 665 DCAEEIVCMKENINLLIDIYYDALDAPKKG 694
>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
Length = 521
Score = 83.2 bits (204), Expect(2) = 6e-22
Identities = 41/84 (48%), Positives = 55/84 (65%)
Frame = +2
Query: 95 RVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLPAFDAE 274
+V VP +L R+PHYM++ S+HS SILG IYD++ +Q HS EI+KLP F+ E
Sbjct: 342 QVEVPRELKPNRFPHYMEKQN--SFHSRSILGWIYDEVDAYQLEDHSNKEIFKLPHFEVE 399
Query: 275 VPERYLGKWRERYDKYRHEMVEAL 346
VPE L KW+ Y YR +M +AL
Sbjct: 400 VPEACLTKWKAHYKDYRDDMCDAL 423
Score = 46.6 bits (109), Expect(2) = 6e-22
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +1
Query: 1 DCKNEKDSLKNKILQLIEIYYDALDAPKSGKKGQ 102
DC EK+++K+ + +L++IYYDALDAPK G K Q
Sbjct: 292 DCVAEKNAVKDNLFELVDIYYDALDAPKQGGKQQ 325
>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 90.5 bits (223), Expect(2) = 2e-21
Identities = 50/98 (51%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Frame = +2
Query: 83 KVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLPA 262
K G +V VP +L + +PHYM+R SY STSILG IYD + +Q+ S+ E+ KLP
Sbjct: 614 KKGGKVVVPGELKSNLFPHYMERVN--SYKSTSILGLIYDTVNAYQAEDASIKEVKKLPM 671
Query: 263 FDAEVPERYLGKWRERYDKYRHEMVEAL-SKCHDSKNN 373
FD EVPE L KWRE Y YR EM A+ DSKNN
Sbjct: 672 FDVEVPEECLKKWREHYQHYRSEMSSAMQDDDRDSKNN 709
Score = 37.4 bits (85), Expect(2) = 2e-21
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +1
Query: 10 NEKDSLKNKILQLIEIYYDALDAPKSGKK 96
+EK +K +L+L+++YY+ALDAPK G K
Sbjct: 590 SEKTHVKANMLRLVDLYYEALDAPKKGGK 618
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 79.7 bits (195), Expect(2) = 5e-19
Identities = 44/89 (49%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Frame = +2
Query: 83 KVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLPA 262
K G +V+VP +L +PHYM + N SY STSILG IY+++ E Q+ S+ E+ KLPA
Sbjct: 1221 KKGVKVDVPKELKVSCFPHYMGK--NRSYPSTSILGSIYNRVDEHQTEDRSLKEVEKLPA 1278
Query: 263 FDA-EVPERYLGKWRERYDKYRHEMVEAL 346
FD EVP+ L KW E + +YR EM AL
Sbjct: 1279 FDENEVPDACLDKWAELHRQYRKEMASAL 1307
Score = 40.0 bits (92), Expect(2) = 5e-19
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +1
Query: 10 NEKDSLKNKILQLIEIYYDALDAPKSGKK 96
+EK+++K KILQL+++YY ALDA K G K
Sbjct: 1197 HEKNNVKEKILQLVDLYYTALDAAKKGVK 1225
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 75.5 bits (184), Expect(2) = 7e-19
Identities = 45/97 (46%), Positives = 56/97 (57%)
Frame = +2
Query: 83 KVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLPA 262
K GK+V VP DL ERYPH+M+R Y STSILG+IYD + Q V +I LP
Sbjct: 807 KSGKKVEVPKDLKPERYPHFMER--TYQYTSTSILGQIYDLVASAQMDV-PCEDIELLPC 863
Query: 263 FDAEVPERYLGKWRERYDKYRHEMVEALSKCHDSKNN 373
F EV + KW+ Y +YR EM +ALS K+N
Sbjct: 864 FLEEVEPSGMEKWKGLYAQYRDEMNKALSSTDQKKSN 900
Score = 43.9 bits (102), Expect(2) = 7e-19
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +1
Query: 1 DCKNEKDSLKNKILQLIEIYYDALDAPKSGKK 96
+C EK L K+L+L ++YY+A+DAPKSGKK
Sbjct: 780 ECAEEKGCLHQKMLKLADLYYEAVDAPKSGKK 811
>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
arietinum]
Length = 997
Score = 80.1 bits (196), Expect(2) = 2e-18
Identities = 40/85 (47%), Positives = 56/85 (65%)
Frame = +2
Query: 80 RKVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLP 259
+K G ++ VP DLT E +PHYM+RDG S+ STSILG IYD++ +Q++ S +I KLP
Sbjct: 813 KKGGGKIQVPEDLTVELFPHYMERDGK-SFTSTSILGLIYDEVCRWQTSDMSGTKIRKLP 871
Query: 260 AFDAEVPERYLGKWRERYDKYRHEM 334
D E+P + KW Y +YR +M
Sbjct: 872 CLDVEIPMHCVEKWETLYKEYRTDM 896
Score = 37.4 bits (85), Expect(2) = 2e-18
Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = +1
Query: 1 DCKNEKDSL--KNKILQLIEIYYDALDAPKSG 90
D EK+ L K IL+LI+IYY+ALDAPK G
Sbjct: 784 DITKEKEVLQVKENILKLIDIYYEALDAPKKG 815
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 95.1 bits (235), Expect = 8e-18
Identities = 47/97 (48%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Frame = +2
Query: 83 KVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLPA 262
K G +VNV +L AE++PH+M R+ SYHSTSILG+IYD ++ FQ S EIW+LP
Sbjct: 745 KSGMKVNVSKELKAEKFPHFMGRES--SYHSTSILGQIYDAVESFQPENQSTKEIWRLPL 802
Query: 263 FDAE-VPERYLGKWRERYDKYRHEMVEALSKCHDSKN 370
F+ + VP+ L W++RYD+YR EM AL ++K+
Sbjct: 803 FNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKD 839
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 95.1 bits (235), Expect = 8e-18
Identities = 47/97 (48%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Frame = +2
Query: 83 KVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLPA 262
K G +VNV +L AE++PH+M R+ SYHSTSILG+IYD ++ FQ S EIW+LP
Sbjct: 759 KSGMKVNVSKELKAEKFPHFMGRES--SYHSTSILGQIYDAVESFQPENQSTKEIWRLPL 816
Query: 263 FDAE-VPERYLGKWRERYDKYRHEMVEALSKCHDSKN 370
F+ + VP+ L W++RYD+YR EM AL ++K+
Sbjct: 817 FNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKD 853
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 94.0 bits (232), Expect = 2e-17
Identities = 49/97 (50%), Positives = 66/97 (68%)
Frame = +2
Query: 83 KVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLPA 262
K G++V VP DL AE +PHYM++D S+ STSILG IYD++ E VGEIWKLP
Sbjct: 803 KSGRKVQVPNDLIAELFPHYMEKDK--SFTSTSILGLIYDEV-EIWLENDMVGEIWKLPC 859
Query: 263 FDAEVPERYLGKWRERYDKYRHEMVEALSKCHDSKNN 373
FD EVP L KW+ +Y++YR +M +AL+ SK++
Sbjct: 860 FDVEVPPSCLEKWKTKYEEYRKDMTDALNLKDKSKSH 896
>ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
gi|241926977|gb|EES00122.1| hypothetical protein
SORBIDRAFT_03g002800 [Sorghum bicolor]
Length = 1127
Score = 70.9 bits (172), Expect(2) = 1e-16
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Frame = +2
Query: 83 KVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLPA 262
K G ++ VP +L ++YPH+M+RD SY STS+LG+IYD++ +S + +I L
Sbjct: 936 KEGNKITVPGELKVKKYPHFMERDEKKSYTSTSVLGKIYDEVMLKESEIDPEIKIVPLSC 995
Query: 263 F-DAEVPERYLGKWRERYDKYRHEMVEALSKCHD--SKNN 373
F + +V E Y G+WR Y +Y E + L K D KNN
Sbjct: 996 FTEVKVSEDYKGRWRSLYYQYLRESTD-LCKLEDKAEKNN 1034
Score = 41.2 bits (95), Expect(2) = 1e-16
Identities = 17/30 (56%), Positives = 24/30 (80%)
Frame = +1
Query: 7 KNEKDSLKNKILQLIEIYYDALDAPKSGKK 96
K+E+ ++K K+L L++IYY ALDAPK G K
Sbjct: 911 KSERQAIKKKMLDLVDIYYLALDAPKEGNK 940
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 71.6 bits (174), Expect(2) = 1e-16
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +2
Query: 83 KVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLPA 262
K G +V++PPDL + +PHYM+RD + STSILG I+D + + EI KL
Sbjct: 806 KKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWY 865
Query: 263 FDAE-VPERYLGKWRERYDKYRHEMVEALSKCHDSKNN 373
F+ E VP+ ++ K+ Y+ YR EM +A+ + K N
Sbjct: 866 FEDEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRN 903
Score = 40.4 bits (93), Expect(2) = 1e-16
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = +1
Query: 13 EKDSLKNKILQLIEIYYDALDAPKSGKK 96
EK K IL+LI+IYYDALDAPK G K
Sbjct: 783 EKYERKKNILKLIDIYYDALDAPKKGAK 810
>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 71.6 bits (174), Expect(2) = 1e-16
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +2
Query: 83 KVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLPA 262
K G +V++PPDL + +PHYM+RD + STSILG I+D + + EI KL
Sbjct: 780 KKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWY 839
Query: 263 FDAE-VPERYLGKWRERYDKYRHEMVEALSKCHDSKNN 373
F+ E VP+ ++ K+ Y+ YR EM +A+ + K N
Sbjct: 840 FEDEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRN 877
Score = 40.4 bits (93), Expect(2) = 1e-16
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = +1
Query: 13 EKDSLKNKILQLIEIYYDALDAPKSGKK 96
EK K IL+LI+IYYDALDAPK G K
Sbjct: 757 EKYERKKNILKLIDIYYDALDAPKKGAK 784
>ref|XP_004288888.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1068
Score = 73.6 bits (179), Expect(2) = 2e-16
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Frame = +2
Query: 83 KVGKRVNVPPDLTAERYPHYMQR-DGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLP 259
K G +V VP DL R+PHYM + + S+SILGEIYD + + Q+ + + EI KLP
Sbjct: 874 KKGVKVEVPKDLKVPRFPHYMDKLKEEKTETSSSILGEIYDGVGKCQAKLAFLTEIKKLP 933
Query: 260 AFDA-EVPERYLGKWRERYDKYRHEMVEALSKCH 358
FD +VPE L WR+ Y++YR EM A+ +
Sbjct: 934 IFDINQVPEHCLNNWRKLYEQYRGEMSSAMKNAN 967
Score = 37.4 bits (85), Expect(2) = 2e-16
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +1
Query: 13 EKDSLKNKILQLIEIYYDALDAPKSGKK 96
EK + NKIL+L++IYY ALDA K G K
Sbjct: 851 EKKDIMNKILRLVDIYYIALDAAKKGVK 878
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 89.7 bits (221), Expect = 3e-16
Identities = 43/97 (44%), Positives = 65/97 (67%)
Frame = +2
Query: 83 KVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLPA 262
K G +V +P L +++PH++Q+ SYHSTS+LGEIYD++++F++ + EI KL A
Sbjct: 915 KSGNKVYIPKRLKVDKFPHFLQKKE--SYHSTSVLGEIYDRVEKFKAEEPAAVEIKKLSA 972
Query: 263 FDAEVPERYLGKWRERYDKYRHEMVEALSKCHDSKNN 373
F+ +P+ L W ERY YR EM EAL+ +SKN+
Sbjct: 973 FEVGIPDTCLRLWEERYRNYRFEMKEALNTSSESKND 1009
>ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329805|gb|EFH60224.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 934
Score = 69.3 bits (168), Expect(2) = 5e-16
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Frame = +2
Query: 83 KVGKRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLPA 262
K G +V++PPDL + +PHYM+RD + STSILG I+D + + EI KL
Sbjct: 748 KKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWY 807
Query: 263 FDAE-VPERYLGKWRERYDKYRHEMVEALSK 352
F+ E VP+ ++ K+ Y+ YR EM +A+ +
Sbjct: 808 FEDEPVPKSHMDKFTSWYENYRAEMSQAMEE 838
Score = 40.4 bits (93), Expect(2) = 5e-16
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = +1
Query: 13 EKDSLKNKILQLIEIYYDALDAPKSGKK 96
EK K IL+LI+IYYDALDAPK G K
Sbjct: 725 EKYERKKNILKLIDIYYDALDAPKKGAK 752
>ref|XP_002310028.1| hypothetical protein POPTRDRAFT_654879 [Populus trichocarpa]
Length = 189
Score = 87.8 bits (216), Expect = 1e-15
Identities = 42/93 (45%), Positives = 58/93 (62%)
Frame = +2
Query: 92 KRVNVPPDLTAERYPHYMQRDGNCSYHSTSILGEIYDKLKEFQSAVHSVGEIWKLPAFDA 271
K++ VP L AE +PH+M ++ +Y STSILG+IYDK+K ++ S ++WKLP FD
Sbjct: 8 KQIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDG 67
Query: 272 EVPERYLGKWRERYDKYRHEMVEALSKCHDSKN 370
EV E L KW+ Y +YR EM AL + N
Sbjct: 68 EVHESCLVKWKGLYGQYRTEMRNALQAGKEKNN 100