BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00008094
         (960 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, ...   204   3e-50
ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, I...   204   4e-50
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...   202   1e-49
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi...   202   1e-49
ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, ...   202   2e-49
ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group] g...   201   3e-49
gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indi...   201   3e-49
ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, ...   201   4e-49
ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, I...   198   2e-48
gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subun...   198   3e-48
ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, I...   197   5e-48
gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 ...   196   1e-47
ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, I...   194   4e-47
ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF8...   194   4e-47
gb|EMJ13247.1| hypothetical protein PRUPE_ppa011397mg [Prunus pe...   192   2e-46
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I...   192   2e-46
gb|ABK26380.1| unknown [Picea sitchensis]                             191   5e-46
gb|EXB86762.1| DNA-directed RNA polymerases I, II, and III subun...   190   8e-46
ref|XP_004307064.1| PREDICTED: DNA-directed RNA polymerases I, I...   190   8e-46
ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [S...   189   1e-45

>ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like [Solanum tuberosum]
          Length = 145

 Score =  204 bits (520), Expect = 3e-50
 Identities = 100/145 (68%), Positives = 122/145 (84%), Gaps = 2/145 (1%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           M +TLFEDIFT+   DP GKKFD+VNRI A+SE+FDM+M LDINTEIYPM   +KFMM L
Sbjct: 1   MVETLFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDINTEIYPMRVKDKFMMVL 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITED--KRTGKADILASFCGLLM 359
           A TLN+DGTPD+GYF QGN+KSLADK+EYVMHGKLY+I+E+   +  KADI  SF GLLM
Sbjct: 61  ASTLNLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLM 120

Query: 358 WMKGDLTVAAKFELDQRLFILIRKV 284
            ++GD ++AAKFELDQ++F+LIRKV
Sbjct: 121 QLRGDPSIAAKFELDQKIFLLIRKV 145


>ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like isoform 1 [Solanum lycopersicum]
           gi|460377396|ref|XP_004234479.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3-like
           isoform 2 [Solanum lycopersicum]
          Length = 145

 Score =  204 bits (519), Expect = 4e-50
 Identities = 99/145 (68%), Positives = 122/145 (84%), Gaps = 2/145 (1%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           M +TLFEDIFT+   DP GKKFD+VNRI A+SE+FDM+M LD+NTEIYPM   +KFMM L
Sbjct: 1   MVETLFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDVNTEIYPMRVKDKFMMVL 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITED--KRTGKADILASFCGLLM 359
           A TLN+DGTPD+GYF QGN+KSLADK+EYVMHGKLY+I+E+   +  KADI  SF GLLM
Sbjct: 61  ASTLNLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLM 120

Query: 358 WMKGDLTVAAKFELDQRLFILIRKV 284
            ++GD ++AAKFELDQ++F+LIRKV
Sbjct: 121 QLRGDPSIAAKFELDQKIFLLIRKV 145


>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa Japonica Group]
          Length = 396

 Score =  202 bits (515), Expect = 1e-49
 Identities = 97/147 (65%), Positives = 122/147 (82%), Gaps = 3/147 (2%)
 Frame = -3

Query: 715 RMADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMME 536
           +M + LFEDIFT+  +DP GKKFD+V+RI A+SE+FDMYMQLD+ TE+YPM  G++F M 
Sbjct: 250 KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 309

Query: 535 LAPTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG---KADILASFCGL 365
           LAPTLN+DGTPD+G++TQ  RK+LADK++YVMHGKLYKI+ED  +G   K +I ASF GL
Sbjct: 310 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 369

Query: 364 LMWMKGDLTVAAKFELDQRLFILIRKV 284
           LM +KGD + AA FELDQRLF+LIRKV
Sbjct: 370 LMMLKGDPSSAASFELDQRLFLLIRKV 396


>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
           gi|125598367|gb|EAZ38147.1| hypothetical protein
           OsJ_22498 [Oryza sativa Japonica Group]
          Length = 191

 Score =  202 bits (515), Expect = 1e-49
 Identities = 97/147 (65%), Positives = 122/147 (82%), Gaps = 3/147 (2%)
 Frame = -3

Query: 715 RMADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMME 536
           +M + LFEDIFT+  +DP GKKFD+V+RI A+SE+FDMYMQLD+ TE+YPM  G++F M 
Sbjct: 45  KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 104

Query: 535 LAPTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG---KADILASFCGL 365
           LAPTLN+DGTPD+G++TQ  RK+LADK++YVMHGKLYKI+ED  +G   K +I ASF GL
Sbjct: 105 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 164

Query: 364 LMWMKGDLTVAAKFELDQRLFILIRKV 284
           LM +KGD + AA FELDQRLF+LIRKV
Sbjct: 165 LMMLKGDPSSAASFELDQRLFLLIRKV 191


>ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like isoform X1 [Oryza brachyantha]
           gi|573948243|ref|XP_006656428.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like isoform X2
           [Oryza brachyantha] gi|573948245|ref|XP_006656429.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 8B-like isoform X3 [Oryza brachyantha]
           gi|573948247|ref|XP_006656430.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like isoform X4
           [Oryza brachyantha] gi|573948249|ref|XP_006656431.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 8B-like isoform X5 [Oryza brachyantha]
          Length = 146

 Score =  202 bits (514), Expect = 2e-49
 Identities = 99/146 (67%), Positives = 119/146 (81%), Gaps = 3/146 (2%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           M + LFEDIFT+  +DP GKKFD+V+RI A+SE+FDMYMQLD+ TE+YPM  G+KF M L
Sbjct: 1   MVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRPGDKFTMVL 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG---KADILASFCGLL 362
           APTLN+DGTPD G++TQ  RK+LADKY+YVMHGKLYKI+ED   G   K +I ASF GLL
Sbjct: 61  APTLNLDGTPDIGFYTQAGRKTLADKYDYVMHGKLYKISEDGSGGQATKVEIYASFGGLL 120

Query: 361 MWMKGDLTVAAKFELDQRLFILIRKV 284
           M +KGD + AA FELDQRLF+LIRKV
Sbjct: 121 MMLKGDPSTAANFELDQRLFLLIRKV 146


>ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group]
           gi|29244685|gb|AAO73277.1| putative RNA polymerase
           [Oryza sativa Japonica Group] gi|41469638|gb|AAS07361.1|
           putative RNA polymerase [Oryza sativa Japonica Group]
           gi|108712076|gb|ABF99871.1| RNA polymerase Rpb8 family
           protein, expressed [Oryza sativa Japonica Group]
           gi|108712077|gb|ABF99872.1| RNA polymerase Rpb8 family
           protein, expressed [Oryza sativa Japonica Group]
           gi|113550351|dbj|BAF13794.1| Os03g0845700 [Oryza sativa
           Japonica Group] gi|125588624|gb|EAZ29288.1| hypothetical
           protein OsJ_13351 [Oryza sativa Japonica Group]
           gi|215692970|dbj|BAG88390.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 148

 Score =  201 bits (512), Expect = 3e-49
 Identities = 97/148 (65%), Positives = 121/148 (81%), Gaps = 5/148 (3%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           MA+ LFEDIFT+  +DP GKKFD+V+RI A+S++FDMYMQLD+ T++YPMH G++F M L
Sbjct: 1   MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG-----KADILASFCG 368
            PTLN+DGTPDS +FTQ  RK+LADKYEYVMHGKLYKI+EDK T      K ++ ASF G
Sbjct: 61  VPTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGG 120

Query: 367 LLMWMKGDLTVAAKFELDQRLFILIRKV 284
           LL+ +KGD + AA FELDQRLF+L+RKV
Sbjct: 121 LLVMLKGDPSSAANFELDQRLFLLMRKV 148


>gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indica Group]
          Length = 215

 Score =  201 bits (512), Expect = 3e-49
 Identities = 97/148 (65%), Positives = 121/148 (81%), Gaps = 5/148 (3%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           MA+ LFEDIFT+  +DP GKKFD+V+RI A+S++FDMYMQLD+ T++YPMH G++F M L
Sbjct: 68  MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 127

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG-----KADILASFCG 368
            PTLN+DGTPDS +FTQ  RK+LADKYEYVMHGKLYKI+EDK T      K ++ ASF G
Sbjct: 128 VPTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGG 187

Query: 367 LLMWMKGDLTVAAKFELDQRLFILIRKV 284
           LL+ +KGD + AA FELDQRLF+L+RKV
Sbjct: 188 LLVMLKGDPSSAANFELDQRLFLLMRKV 215


>ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like [Oryza brachyantha]
          Length = 147

 Score =  201 bits (510), Expect = 4e-49
 Identities = 96/147 (65%), Positives = 121/147 (82%), Gaps = 4/147 (2%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           MA+ LFEDIFT+  +DP GKKFD+V+RI A++E+ ++YMQLD+ T++YPMH G+KF M L
Sbjct: 1   MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARNEQLNVYMQLDVATDVYPMHPGDKFTMVL 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITEDKRT----GKADILASFCGL 365
            PTLN+DGTPD+G+FTQ  RK+LADKYEYVMHGKLYKI+EDK T     K ++ ASF GL
Sbjct: 61  VPTLNLDGTPDTGFFTQAGRKTLADKYEYVMHGKLYKISEDKETSGQNAKVEMYASFGGL 120

Query: 364 LMWMKGDLTVAAKFELDQRLFILIRKV 284
           LM +KGD + AA FELDQRLF+L+RKV
Sbjct: 121 LMMLKGDPSSAANFELDQRLFLLMRKV 147


>ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Cucumis sativus]
           gi|449484745|ref|XP_004156968.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3-like
           [Cucumis sativus]
          Length = 144

 Score =  198 bits (504), Expect = 2e-48
 Identities = 99/144 (68%), Positives = 119/144 (82%), Gaps = 1/144 (0%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           M + LF+DIF I  ++P GKKFDKV RI AKSE+FDM+M LDIN+EIYP+ +GEKF M L
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYPLKEGEKFSMAL 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITEDK-RTGKADILASFCGLLMW 356
           APTLN+DGTPD+GYF QGNRKSLAD+YEYVM GKL++I+E     GKA+I ASF GLLM 
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAEIDASFGGLLMM 120

Query: 355 MKGDLTVAAKFELDQRLFILIRKV 284
           +KGD +  +KFELDQRLF+LIRKV
Sbjct: 121 LKGDPSHCSKFELDQRLFLLIRKV 144


>gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subunit rpabc3
           [Aegilops tauschii]
          Length = 220

 Score =  198 bits (503), Expect = 3e-48
 Identities = 98/148 (66%), Positives = 119/148 (80%), Gaps = 5/148 (3%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           MA+ LFEDIF +  +DP GKKFD+VNRI A+SE+ +MYMQLDI T++YPMH G+KF M L
Sbjct: 1   MAEHLFEDIFHVTRIDPDGKKFDRVNRIEARSEQLEMYMQLDIATDVYPMHMGDKFTMVL 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITE-----DKRTGKADILASFCG 368
           APTLN+DGTPD+GY+TQ  RK+LADKY+YVMHGKLYKI+E     DK   K +I ASF G
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDNSSKDKGPTKVEIYASFGG 120

Query: 367 LLMWMKGDLTVAAKFELDQRLFILIRKV 284
           LLM +KGD + AA  ELDQ+LF+LIRKV
Sbjct: 121 LLMLLKGDPSSAANLELDQKLFLLIRKV 148


>ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 146

 Score =  197 bits (501), Expect = 5e-48
 Identities = 97/146 (66%), Positives = 117/146 (80%), Gaps = 3/146 (2%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           MA+ LFEDIF +  +DP GKKFD+VNRI A+SE+F MYMQLD+ T +YPMH G+KF M L
Sbjct: 1   MAEHLFEDIFVVNRIDPDGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVL 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG---KADILASFCGLL 362
           APTLN+DGTPD+GY+TQ  RK+LADKY+YVMHGKLYKI+ED   G   K +  ASF GLL
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVETYASFGGLL 120

Query: 361 MWMKGDLTVAAKFELDQRLFILIRKV 284
           M +KGD + AA  ELDQRLF+L+RKV
Sbjct: 121 MLLKGDPSSAANLELDQRLFLLMRKV 146


>gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
           [Zea mays]
          Length = 146

 Score =  196 bits (497), Expect = 1e-47
 Identities = 93/146 (63%), Positives = 117/146 (80%), Gaps = 3/146 (2%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           M+D LFED F +  +DP GKKFD+V+R+ A+SE+ DMYMQLD+ T++YPMH GEKF M +
Sbjct: 1   MSDHLFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVI 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITED---KRTGKADILASFCGLL 362
           APTLN+DGTPD+GY+TQ  RK+LAD YEYVM GKLYKI+ED    +  K ++ ASF GLL
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLL 120

Query: 361 MWMKGDLTVAAKFELDQRLFILIRKV 284
           M ++GD + AA FELDQRLF+LIRKV
Sbjct: 121 MLLRGDPSTAASFELDQRLFLLIRKV 146


>ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 144

 Score =  194 bits (493), Expect = 4e-47
 Identities = 97/146 (66%), Positives = 118/146 (80%), Gaps = 3/146 (2%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           MA+ LFEDIF +  +DP GKKFD+VNRI A+SE+  MYMQLD+ T++YPMH G+KF M L
Sbjct: 1   MAEHLFEDIFVVSRIDPDGKKFDRVNRIEARSEQ--MYMQLDVATDVYPMHAGDKFTMVL 58

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG---KADILASFCGLL 362
           APTLN+DGTPD+GY+TQ  RK+LADKY+YVMHGKLYKI+ED   G   K +I ASF GLL
Sbjct: 59  APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVEIYASFGGLL 118

Query: 361 MWMKGDLTVAAKFELDQRLFILIRKV 284
           M +KGD + AA  ELDQRLF+L+RKV
Sbjct: 119 MLLKGDPSSAANLELDQRLFLLMRKV 144


>ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF83949.1| unknown [Zea
           mays] gi|195607894|gb|ACG25777.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195608506|gb|ACG26083.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195611040|gb|ACG27350.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195649823|gb|ACG44379.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195653495|gb|ACG46215.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|238014148|gb|ACR38109.1| unknown [Zea mays]
           gi|413932441|gb|AFW66992.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 1 [Zea mays]
           gi|413932442|gb|AFW66993.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 2 [Zea mays]
           gi|413932443|gb|AFW66994.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 3 [Zea mays]
           gi|413932444|gb|AFW66995.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 4 [Zea mays]
          Length = 146

 Score =  194 bits (493), Expect = 4e-47
 Identities = 92/146 (63%), Positives = 117/146 (80%), Gaps = 3/146 (2%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           M++ LFED F +  +DP GKKFD+V+R+ A+SE+ DMYMQLD+ T++YPMH GEKF M +
Sbjct: 1   MSEHLFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVI 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITED---KRTGKADILASFCGLL 362
           APTLN+DGTPD+GY+TQ  RK+LAD YEYVM GKLYKI+ED    +  K ++ ASF GLL
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLL 120

Query: 361 MWMKGDLTVAAKFELDQRLFILIRKV 284
           M ++GD + AA FELDQRLF+LIRKV
Sbjct: 121 MLLRGDPSTAASFELDQRLFLLIRKV 146


>gb|EMJ13247.1| hypothetical protein PRUPE_ppa011397mg [Prunus persica]
          Length = 212

 Score =  192 bits (487), Expect = 2e-46
 Identities = 93/145 (64%), Positives = 117/145 (80%), Gaps = 1/145 (0%)
 Frame = -3

Query: 715 RMADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMME 536
           RM D LFEDIF I+ ++P GKKFDKV RI AKSE  +M+M LD+N+E+YPM +GEKF M 
Sbjct: 68  RMVDRLFEDIFQILRLNPDGKKFDKVTRIEAKSETCEMFMHLDVNSEVYPMREGEKFSMA 127

Query: 535 LAPTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITE-DKRTGKADILASFCGLLM 359
           L  T+N+DGTPD+GYFTQGNRK+LAD+YEYVM GKL+KI+E  KR  KA++ ASF GLLM
Sbjct: 128 LTSTINLDGTPDTGYFTQGNRKTLADEYEYVMQGKLFKISEGSKRDPKAEVNASFGGLLM 187

Query: 358 WMKGDLTVAAKFELDQRLFILIRKV 284
            +KG+ +    FELDQR+F+LIRK+
Sbjct: 188 MLKGEASQFKNFELDQRMFLLIRKL 212


>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3 isoform 1 [Vitis vinifera]
           gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3 isoform 2
           [Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
           protein product [Vitis vinifera]
          Length = 145

 Score =  192 bits (487), Expect = 2e-46
 Identities = 96/145 (66%), Positives = 114/145 (78%), Gaps = 2/145 (1%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           M +TLF DIF +I +DP GKKFDKV+RI A+SE+ DMYMQLD+NTEIYPMH GEKF M L
Sbjct: 1   MENTLFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSL 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITEDKR--TGKADILASFCGLLM 359
           A TL++DGTPD+GY+TQ  RKSLADK+EYVMHGKLYKI+E+      K  I  SF GLLM
Sbjct: 61  ASTLDLDGTPDTGYYTQAGRKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLM 120

Query: 358 WMKGDLTVAAKFELDQRLFILIRKV 284
            + GD    AK +LDQR+F+LIRKV
Sbjct: 121 MLSGDPANTAKLDLDQRVFLLIRKV 145


>gb|ABK26380.1| unknown [Picea sitchensis]
          Length = 145

 Score =  191 bits (484), Expect = 5e-46
 Identities = 94/145 (64%), Positives = 116/145 (80%), Gaps = 2/145 (1%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           M + LFEDIFT+  +DP GKKFDKV+RI A+SE+FDMYM LD+N ++YP+  GEKF + L
Sbjct: 1   MVELLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVAL 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG--KADILASFCGLLM 359
           APTLN+DGTPD+GYF QG RKSLADKYEYVM+GKLY ++E+      K +I ASF GLLM
Sbjct: 61  APTLNLDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEGSGANVKVEINASFGGLLM 120

Query: 358 WMKGDLTVAAKFELDQRLFILIRKV 284
            +KGD + A  FELDQRLF+L+RKV
Sbjct: 121 LLKGDPSNAGNFELDQRLFLLMRKV 145


>gb|EXB86762.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Morus
           notabilis]
          Length = 187

 Score =  190 bits (482), Expect = 8e-46
 Identities = 95/144 (65%), Positives = 115/144 (79%), Gaps = 1/144 (0%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           MA+ LFEDIF I  ++P GKKFDKV RI AKSE+FDM+M LD+ T++YPM++GEKF M L
Sbjct: 1   MAEFLFEDIFKIDRLNPDGKKFDKVTRIEAKSEKFDMFMHLDVGTDVYPMNEGEKFSMAL 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITEDK-RTGKADILASFCGLLMW 356
           + TLN DGTPD+GY+T GNRK+LAD YEYVM GKLY+I E     GKA+I ASF GLLM 
Sbjct: 61  SSTLNEDGTPDTGYYTPGNRKTLADNYEYVMQGKLYRIAEGSGHHGKAEIDASFGGLLMM 120

Query: 355 MKGDLTVAAKFELDQRLFILIRKV 284
           +KGD +   K+ELDQRLF+LIRKV
Sbjct: 121 LKGDPSYFKKYELDQRLFLLIRKV 144


>ref|XP_004307064.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC3-like isoform 2 [Fragaria vesca subsp. vesca]
          Length = 144

 Score =  190 bits (482), Expect = 8e-46
 Identities = 93/144 (64%), Positives = 114/144 (79%), Gaps = 1/144 (0%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           M D LFEDIF ++ ++P GKKFDKV R+ AKSE  DM+M LD+N+E+YP+ +GEKF M L
Sbjct: 1   MVDRLFEDIFEVLRLNPDGKKFDKVTRVEAKSETCDMFMHLDVNSEVYPIKEGEKFSMAL 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITE-DKRTGKADILASFCGLLMW 356
             TLN+DGTPDSGYFT GNRK+LAD+YEYVM GKLYKI+E  KR  KA++ ASF GLLM 
Sbjct: 61  TSTLNLDGTPDSGYFTPGNRKTLADEYEYVMQGKLYKISEGSKRDPKAEVNASFGGLLMM 120

Query: 355 MKGDLTVAAKFELDQRLFILIRKV 284
           +KG+      FELDQRLF+LIRK+
Sbjct: 121 LKGESAQFKNFELDQRLFLLIRKL 144


>ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [Sorghum bicolor]
           gi|241917379|gb|EER90523.1| hypothetical protein
           SORBIDRAFT_01g001420 [Sorghum bicolor]
          Length = 145

 Score =  189 bits (480), Expect = 1e-45
 Identities = 91/145 (62%), Positives = 115/145 (79%), Gaps = 2/145 (1%)
 Frame = -3

Query: 712 MADTLFEDIFTIIDMDPGGKKFDKVNRIVAKSERFDMYMQLDINTEIYPMHKGEKFMMEL 533
           M++ LFED F +  +DP GKKFD+V+R+ A+SE+  MYMQLD+ T++YPM   EKF M L
Sbjct: 1   MSEHLFEDTFVVNRLDPDGKKFDRVSRVEARSEQLAMYMQLDVATDVYPMQPNEKFNMVL 60

Query: 532 APTLNMDGTPDSGYFTQGNRKSLADKYEYVMHGKLYKITED--KRTGKADILASFCGLLM 359
           APTLN+DGTPD+GY+TQ  RK+LAD YEYVMHGKLYKI+ED   +  K +I ASF GLLM
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMHGKLYKISEDTSSQNAKVEIYASFGGLLM 120

Query: 358 WMKGDLTVAAKFELDQRLFILIRKV 284
            ++GD + AA FELDQRLF+L+RKV
Sbjct: 121 LLRGDPSTAASFELDQRLFLLMRKV 145