BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00005392
         (4521 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   530   e-173
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   512   e-167
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       493   e-152
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   473   e-147
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   452   e-138
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           452   e-137
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal...   462   e-136
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   444   e-130
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   444   e-130
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   412   e-129
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   424   e-127
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   460   e-126
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   365   e-123
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]              429   e-117
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   388   e-115
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   419   e-114
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   365   e-113
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694...   416   e-113
gb|EOY17513.1| Uncharacterized protein TCM_036737 [Theobroma cacao]   383   e-108
ref|XP_006576082.1| PREDICTED: uncharacterized protein LOC102659...   395   e-107

>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  530 bits (1365), Expect(2) = e-173
 Identities = 288/841 (34%), Positives = 454/841 (53%), Gaps = 10/841 (1%)
 Frame = -3

Query: 3043 MRIASWNIRGLNLPLKQNGVRHLIKEHRIDVLAVLETKINDVKCSRIMRNKFGG-WNHFH 2867
            M+I +WN+RGLN P+K   V+H +   +I + ++ ET++      +I + KFG  W+  +
Sbjct: 1    MKITTWNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQK-KFGNRWSWIN 59

Query: 2866 NFHLHNAGRILIIWDPSTTILEPIILDAQFILARAICKVTALSFHICFIYGFHTVVSRRP 2687
            N+     GRI + W  +   +  + +  Q I            F +  +YG HT+  R+ 
Sbjct: 60   NYACSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMAAVYGLHTIADRKV 119

Query: 2686 LWDTXXXXXXXXXXXXXL-GDFNCVMKASERLNGTEVSSYETRDLLQCCLSAGLSDLNSI 2510
            LW+              L GD+N V  A +RLNG +VS  ET DL    L A L +  + 
Sbjct: 120  LWEELYNFVSVCHEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSFVLKAQLLEAPTT 179

Query: 2509 GSFHTWTNNTV-----LCKLDRAMANEAWFSSNHAGMANFLPSGCLSDHSPCIVALFQHS 2345
            G F++W N ++       ++D++  N AW +     +  +  +G +SDHSP I  L    
Sbjct: 180  GLFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAG-ISDHSPLIFNLATQH 238

Query: 2344 RPTKKNFKFFNMWCDHADFEQLISEHWEEPIHGTKQFTLCKKLKRLKGPLKALNKKHFSH 2165
                + FKF N   D   F +++ E W    H  K   +  +L+ +K  LK+ + K FS 
Sbjct: 239  DEGGRPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWVRLQAVKRALKSFHSKKFSK 298

Query: 2164 ISSRAEKARNDFD--QALEEFHLQPANTALQLQIADLKLKARSLSEAERSFYFQQAKCKH 1991
               + E+ R      QAL E       + LQ +  DL  + R  S  + S   Q+++ + 
Sbjct: 299  AHCQVEELRRKLAAVQALPEVSQV---SELQEEEKDLIAQLRKWSTIDESILKQKSRIQW 355

Query: 1990 LTYSDRGTKFFHSLVKRNTKRNHIAAITKMDGTVTTSSCEVVKEFLDFYDNLLGTEGD-C 1814
            L+  D  +KFF + +K    RN I  +    G   T + E+  E  +FY  LLGT     
Sbjct: 356  LSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQL 415

Query: 1813 QPINLEICQDGPLITQNQSRDLLRPISIDEIKSALFSIGDDKSPGPDGYTAQFYKKAWNI 1634
            + I+L + + G  ++      L++PI+I EI  AL  I D K+PG DG+ + F+KK+W +
Sbjct: 416  EAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLV 475

Query: 1633 VGVQFSQAIMEFFTSGSLLRMINHTVIALVPKSDHASTVGDFRPIACCNVTYKVIAKILA 1454
            +  +  + I++FF +G + + IN T + L+PK D A    D+RPIACC+  YK+I+KIL 
Sbjct: 476  IKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILT 535

Query: 1453 DRLSVTLGTLIDKAQSAFVPGRSMLDNIHMVQELLKHYNRKRISPRCILKIDLKKAYDTI 1274
             RL   +  ++D AQ+ F+P R + DNI +  EL++ YNR+ +SPRC++K+D++KAYD++
Sbjct: 536  KRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSV 595

Query: 1273 CWDFLKDMLDGLNFPPKFVHWIMECVSTPSYSLRINGEMHGFFKGQRGLRQGDPLSPFLF 1094
             W FL+ ML  L FP  F+ WIM CV T SYS+ +NG     F  Q+GLRQGDPLSPFLF
Sbjct: 596  EWVFLESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLF 655

Query: 1093 VICVEYFSRSLNRAAKNAHFSYHPKCGGLKISHXXXXXXXXXXXXXXASSVGILLSTLTD 914
             + +EY SR +    K+  F++HPKC  +K++H              ASS+  +++    
Sbjct: 656  ALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNS 715

Query: 913  FGNKSGLRANALKSSIFTAGIQGREKQVVLEAANIPIGHMPFRYLGIPIVAEKLKVCQYG 734
            F   SGL+A+  KS I+  G+   E + + +   +PIG +PFRYLG+P+ ++KL   Q  
Sbjct: 716  FSKASGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCK 775

Query: 733  LLIDKIHSYLKTWTAKNLSHAGKLELIQAVLQGTECLWFSVLPVPCAVMDKIISICRSFL 554
             LIDKI +  + W A  LS+AG+L+L++ +L   +  W  + P+P  ++  + + CR FL
Sbjct: 776  PLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFL 835

Query: 553  W 551
            W
Sbjct: 836  W 836



 Score =  108 bits (269), Expect(2) = e-173
 Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 3/182 (1%)
 Frame = -2

Query: 539  APVAWKDLCLPKSEGGLGLRELKTWNNSLLAKVLWNINAKKDSLWIRWIDQVYLHGVSIW 360
            APVAW  L  PKS GGL +  +  WN + + K+LW I  K+D LW+RW++  Y+   +I 
Sbjct: 846  APVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNIE 905

Query: 359  DVQNKKDHSPLMKRILQIRNQLLQMEGSCTAAITRIESWMRLGNFSSSLAYEWLRPKGTK 180
            +V    + S ++++I + R +LL   G   A    +       NFS    Y+ L+     
Sbjct: 906  NVTVSSNTSWILRKIFESR-ELLTRTGGWEAVSNHM-------NFSIKKTYKLLQEDYEN 957

Query: 179  TIWIKQIWKEYIPPKYSFNLWLAAKSRLQTRDRLSFQD---NTECCLCNNATESHRHLFF 9
             +W + I      PK  F LWLA  +RL T +R+S  +   +  C +C N  E+ +HLFF
Sbjct: 958  VVWKRLICNNKATPKSQFILWLAMLNRLATAERVSRWNRDVSPLCKMCGNEIETIQHLFF 1017

Query: 8    QC 3
             C
Sbjct: 1018 NC 1019


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  512 bits (1318), Expect(2) = e-167
 Identities = 281/841 (33%), Positives = 443/841 (52%), Gaps = 10/841 (1%)
 Frame = -3

Query: 3043 MRIASWNIRGLNLPLKQNGVRHLIKEHRIDVLAVLETKINDVKCSRIMRNKFGGWNHFHN 2864
            M   SWN+RG+N P K   +++ +  H+I V A+LET++ +   S++       W   +N
Sbjct: 1    MLCVSWNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASKVQGKLGKDWKWLNN 60

Query: 2863 FHLHNAGRILIIWDPSTTILEPIILDAQFILARAICKVTALSFHICFI--YGFHTVVSRR 2690
            +      RI I W P+   +       Q +    +C +   S  +  +  YG HT+  R+
Sbjct: 61   YSHSARERIWIGWRPAWVNVTLTHTQEQLM----VCDIQDQSHKLKMVAVYGLHTIADRK 116

Query: 2689 PLWDTXXXXXXXXXXXXXLGDFNCVMKASERLNGTEVSSYETRDLLQCCLSAGLSDLNSI 2510
             LW               +GDFN V  +++RL GT V+  ET D  Q  L + L +  S 
Sbjct: 117  SLWSGLLQCVQQQDPMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFLLQSNLIESRST 176

Query: 2509 GSFHTWTNNT-----VLCKLDRAMANEAWFSSNHAGMANFLPSGCLSDHSPCIVALFQHS 2345
             S+++W+N++     VL ++D+A  N  W          +LP G +SDHSP +  L    
Sbjct: 177  WSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPG-ISDHSPLLFNLMTGR 235

Query: 2344 RPTKKNFKFFNMWCDHADFEQLISEHWEEPIHGTKQFTLCKKLKRLKGPLKALNKKHFSH 2165
                K FKF N+  +  +F + + + W       K   +   LK +K  LK +  +    
Sbjct: 236  PQGGKPFKFMNVMAEQGEFLETVEKAWNSVNGRFKLQAIWLNLKAVKRELKQMKTQKIGL 295

Query: 2164 ISSRAEKARNDFD--QALEEFHLQPANTALQLQIADLKLKARSLSEAERSFYFQQAKCKH 1991
               + +  R+     Q+ ++F     N  +Q     +    R  S  E S   Q+++   
Sbjct: 296  AHEKVKNLRHQLQDLQSQDDFD---HNDIMQTDAKSIMNDLRHWSHIEDSILQQKSRITW 352

Query: 1990 LTYSDRGTKFFHSLVKRNTKRNHIAAITKMDGTVTTSSCEVVKEFLDFYDNLLGTEGDC- 1814
            L   D  +K F + VK     N I  +   DG V   + EV +E L+FY  LLGT     
Sbjct: 353  LQQGDTNSKLFFTAVKARHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLLGTRASTL 412

Query: 1813 QPINLEICQDGPLITQNQSRDLLRPISIDEIKSALFSIGDDKSPGPDGYTAQFYKKAWNI 1634
              ++L   + G  ++      L+R ++  EI  AL  IG+DK+PG DG+ A F+KK+W  
Sbjct: 413  MGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGS 472

Query: 1633 VGVQFSQAIMEFFTSGSLLRMINHTVIALVPKSDHASTVGDFRPIACCNVTYKVIAKILA 1454
            +  +    I EFF +  + R IN  V+ L+PK  HA+ V +FRPIACC V YK+I+K+L 
Sbjct: 473  IKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLT 532

Query: 1453 DRLSVTLGTLIDKAQSAFVPGRSMLDNIHMVQELLKHYNRKRISPRCILKIDLKKAYDTI 1274
            +R+   +G ++++AQS F+PGR + DNI +  EL++ Y RK +SPRCI+K+D++KAYD++
Sbjct: 533  NRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSV 592

Query: 1273 CWDFLKDMLDGLNFPPKFVHWIMECVSTPSYSLRINGEMHGFFKGQRGLRQGDPLSPFLF 1094
             W FL+ +L    FP +FV WIMECVST SYS+ +NG     F+ ++GLRQGDP+SPFLF
Sbjct: 593  EWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLF 652

Query: 1093 VICVEYFSRSLNRAAKNAHFSYHPKCGGLKISHXXXXXXXXXXXXXXASSVGILLSTLTD 914
             +C+EY SR L     +  F++HPKC  L I+H               SS+  +      
Sbjct: 653  ALCMEYLSRCLEELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQK 712

Query: 913  FGNKSGLRANALKSSIFTAGIQGREKQVVLEAANIPIGHMPFRYLGIPIVAEKLKVCQYG 734
            F + SGL A+  KS+I+  G+     + + +  ++ +G +PFRYLG+P+ ++KL   Q  
Sbjct: 713  FSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCK 772

Query: 733  LLIDKIHSYLKTWTAKNLSHAGKLELIQAVLQGTECLWFSVLPVPCAVMDKIISICRSFL 554
             L++ I +  +TW AK LS+AG+L+LI+++L   +  W  + P+   V+  +  +CR FL
Sbjct: 773  PLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFL 832

Query: 553  W 551
            W
Sbjct: 833  W 833



 Score =  106 bits (265), Expect(2) = e-167
 Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 6/185 (3%)
 Frame = -2

Query: 539  APVAWKDLCLPKSEGGLGLRELKTWNNSLLAKVLWNINAKKDSLWIRWIDQVYLHGVSIW 360
            APVAW  +  PKS GG  +  +K WN + + K+LW I  K+D LW+RWI   Y+    I 
Sbjct: 843  APVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDIL 902

Query: 359  DVQNKKDHSPLMKRILQIRNQLLQMEGSCTAAITRIESWMRL---GNFSSSLAYEWLRPK 189
             V      + ++++I++ R+ L           + I  W  +     FS   AY+ +   
Sbjct: 903  TVNISNQTTWILRKIVKARDHL-----------SNIGDWDEICIGDKFSMKKAYKKISEN 951

Query: 188  GTKTIWIKQIWKEYIPPKYSFNLWLAAKSRLQTRDRLS---FQDNTECCLCNNATESHRH 18
            G +  W + I   Y  PK  F LW+    RL T DR+S    Q +    LC N  E+ +H
Sbjct: 952  GERVRWRRLICNNYATPKSKFILWMMLHERLPTVDRISRWGVQCDLNYRLCRNDGETIQH 1011

Query: 17   LFFQC 3
            LFF C
Sbjct: 1012 LFFSC 1016


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  493 bits (1270), Expect(2) = e-152
 Identities = 295/852 (34%), Positives = 459/852 (53%), Gaps = 17/852 (1%)
 Frame = -3

Query: 3028 WNIRGLNLPLKQNGVRHLIKEHRIDVLAVLETKINDVKCSRIMRNKFGGWNHFHNFHLHN 2849
            WNIRG N    ++G +  +K ++     V+ET +   K  + +     GW+   N+   +
Sbjct: 8    WNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENYAFSD 67

Query: 2848 AGRILIIWDPSTTILEPIILDAQFILARAICKVTALSFHICFIYGFHTVVSRRPLW---- 2681
             G+I ++WDPS  ++  +    Q I    +   +     +  +Y  + V SR+ LW    
Sbjct: 68   LGKIWVMWDPSVQVVV-VAKSLQMITCEVLLPGSPSWIIVSVVYAANEVASRKELWIEIV 126

Query: 2680 DTXXXXXXXXXXXXXLGDFNCVMKASERLNGTEVS-SYETRDLLQCCLSAGLSDLNSIGS 2504
            +              LGDFN V+   E  N   ++     RD   C L+A LSDL   G+
Sbjct: 127  NMVVSGIIGDRPWLVLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSDLRYKGN 186

Query: 2503 FHTWTNNT----VLCKLDRAMANEAWFSSNHAGMANFLPSGCLSDHSPCIVALFQHSRPT 2336
              TW N +    V  K+DR + N++W +   + +  F  S   SDH  C V L + S   
Sbjct: 187  TFTWWNKSHTTPVAKKIDRILVNDSWNALFPSSLGIF-GSLDFSDHVSCGVVLEETSIKA 245

Query: 2335 KKNFKFFNMWCDHADFEQLISEHWEE-PIHGTKQFTLCKKLKRLKGPLKALNKKHFSHIS 2159
            K+ FKFFN    + DF  L+ ++W    + G+  F + KKLK LK P+K  ++ ++S + 
Sbjct: 246  KRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNYSELE 305

Query: 2158 SRAEKARNDFDQALEEFHLQ---PANTALQLQIADLKLKARSLSEAERSFYFQQAKCKHL 1988
             R ++A +DF    ++  L    P N + +L+    + K   L+ AE SF+ Q+++    
Sbjct: 306  KRTKEA-HDFLIGCQDRTLADPTPINASFELEA---ERKWHILTAAEESFFRQKSRISWF 361

Query: 1987 TYSDRGTKFFHSLVKRNTKRNHIAAITKMDGTVTTSSCEVVKEFLDFYDNLLGTEGDCQP 1808
               D  TK+FH +       N I+A+   +G +  S   ++     ++ +LLG E D  P
Sbjct: 362  AEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEVD--P 419

Query: 1807 INLEICQDGPLITQN----QSRDLLRPISIDEIKSALFSIGDDKSPGPDGYTAQFYKKAW 1640
              +E      L++      Q  +L    S ++I++ALFS+  +KS GPDG+TA+F+  +W
Sbjct: 420  YLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSW 479

Query: 1639 NIVGVQFSQAIMEFFTSGSLLRMINHTVIALVPKSDHASTVGDFRPIACCNVTYKVIAKI 1460
            +IVG + + AI EFF+SG LL+  N T I L+PK  + +   DFRPI+C N  YKVIA++
Sbjct: 480  SIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARL 539

Query: 1459 LADRLSVTLGTLIDKAQSAFVPGRSMLDNIHMVQELLKHYNRKRISPRCILKIDLKKAYD 1280
            L DRL   L  +I  AQSAF+PGRS+ +N+ +  +L+  YN   ISPR +LK+DLKKA+D
Sbjct: 540  LTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFD 599

Query: 1279 TICWDFLKDMLDGLNFPPKFVHWIMECVSTPSYSLRINGEMHGFFKGQRGLRQGDPLSPF 1100
            ++ W+F+   L  L  P KF++WI +C+STP++++ ING   GFFK  +GLRQGDPLSP+
Sbjct: 600  SVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPY 659

Query: 1099 LFVICVEYFSRSLNRAAKNAHFSYHPKCGGLKISHXXXXXXXXXXXXXXASSVGILLSTL 920
            LFV+ +E FS  L+   ++    YHPK   L ISH              + S+  +  TL
Sbjct: 660  LFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETL 719

Query: 919  TDFGNKSGLRANALKSSIFTAGIQGREKQVVLEAANIPIGHMPFRYLGIPIVAEKLKVCQ 740
             DF + SGL+ N  KS ++ AG+   E      A   PIG +P RYLG+P++  KL++ +
Sbjct: 720  DDFASWSGLKVNKDKSHLYLAGLNQLESN-ANAAYGFPIGTLPIRYLGLPLMNRKLRIAE 778

Query: 739  YGLLIDKIHSYLKTWTAKNLSHAGKLELIQAVLQGTECLWFSVLPVPCAVMDKIISICRS 560
            Y  L++KI +  ++W  K LS AG+++LI +V+ G+   W S   +P   + +I S+C  
Sbjct: 779  YEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSR 838

Query: 559  FLWGVNKHQLLG 524
            FLW  N  Q  G
Sbjct: 839  FLWSGNIEQAKG 850



 Score = 75.5 bits (184), Expect(2) = e-152
 Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
 Frame = -2

Query: 533  VAWKDLCLPKSEGGLGLRELKTWNNSLLAKVLWNINAKKDSLWIRWIDQVYLHGVSIWDV 354
            V+W  LCLPKSEGGLGLR L  WN +L  +++W +   KDSLW  W    +L   S W V
Sbjct: 853  VSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAV 912

Query: 353  QNKKDHSPLMKRILQIR---NQLLQME-GSCTAAITRIESWMRLG 231
            +  +  S   KR+L +R   +Q L  + G+   A    ++W  LG
Sbjct: 913  EGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSLG 957



 Score = 63.5 bits (153), Expect = 8e-07
 Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
 Frame = -2

Query: 227  FSSSLAYEWLRPKGTKTIWIKQIWKEYIPPKYSFNLWLAAKSRLQTRDRLSFQDNTE--- 57
            FS++  +E +RPK T   W   IW +   PKY+FN+W++  +RL TR RL+   + +   
Sbjct: 1033 FSAAKTWEAIRPKATVKSWASSIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDA 1092

Query: 56   CCLCNNATESHRHLFFQC 3
            C LC+ A+ES  HL   C
Sbjct: 1093 CVLCSFASESRDHLLLIC 1110


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  473 bits (1216), Expect(2) = e-147
 Identities = 283/847 (33%), Positives = 432/847 (51%), Gaps = 19/847 (2%)
 Frame = -3

Query: 3031 SWNIRGLNLPLKQNGVRHLIKEHRIDVLAVLETKINDVKCSRIMRNKFGGWNHFHNFHLH 2852
            SWN+RG N  +++   R   K  +    ++LET++ + +  R + + F GW    N+   
Sbjct: 6    SWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVCNYEFA 65

Query: 2851 NAGRILIIWDPSTTILEPIILDAQFILARAICKVTALS--FHICFIYGFHTVVSRRPLWD 2678
              GRI ++WDP+   +E  +L           K+  +S  F + F+Y  +    RR LW 
Sbjct: 66   ALGRIWVVWDPA---VEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRRLWS 122

Query: 2677 TXXXXXXXXXXXXXL----GDFNCVMKASERLNGTEVSSYETRDLLQCCLSAGLSDLNSI 2510
                               GDFN  +   +   G    +    +  +C L++ +SDL   
Sbjct: 123  ELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNISDLPFR 182

Query: 2509 GSFHTW----TNNTVLCKLDRAMANEAWFSSNHAGMANFLPSGCLSDHSPCIVALFQHSR 2342
            G+ +TW     NN +  K+DR + N++W  ++     +F      SDH P  V +   S 
Sbjct: 183  GNHYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFCAME-FSDHCPSCVNISNQSG 241

Query: 2341 PTKKNFKFFNMWCDHADFEQLISEHWEEPIH-GTKQFTLCKKLKRLKGPLKALNKKHFSH 2165
               K FK  N    H +F + I   W+   + G+  FTL KK K LKG ++  N++H+S 
Sbjct: 242  GRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSG 301

Query: 2164 ISSRAEKARNDFDQALEEFHLQPANTALQLQIADLKLKARSLSE---AERSFYFQQAKCK 1994
            +  R  +A  +           P++    L+    K   RS +E   AE  F  Q+++  
Sbjct: 302  LEKRVVQAAQNLKTCQNNLLAAPSSYLAGLE----KEAHRSWAELALAEERFLCQKSRVL 357

Query: 1993 HLTYSDRGTKFFHSLVKRNTKRNHIAAITKMDGTVTTSSCEVVKEFLDFYDNLLGTEGDC 1814
             L   D  T FFH ++      N I  +    G    ++ E+    +DF+  L G+    
Sbjct: 358  WLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSSHL 417

Query: 1813 QPINLEICQDGPLITQ----NQSRDLLRP-ISIDEIKSALFSIGDDKSPGPDGYTAQFYK 1649
              I+ E       +T+      +R LL   +S  +IKS  F++  +KSPGPDGYT++F+K
Sbjct: 418  --ISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFK 475

Query: 1648 KAWNIVGVQFSQAIMEFFTSGSLLRMINHTVIALVPKSDHASTVGDFRPIACCNVTYKVI 1469
            K W+IVG     A+ EFF SG LL   N T + +VPK  +A  + +FRPI+CCN  YKVI
Sbjct: 476  KTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVI 535

Query: 1468 AKILADRLSVTLGTLIDKAQSAFVPGRSMLDNIHMVQELLKHYNRKRISPRCILKIDLKK 1289
            +K+LA RL   L   I  +QSAFV GR + +N+ +  EL++ + +  IS R +LK+DL+K
Sbjct: 536  SKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRK 595

Query: 1288 AYDTICWDFLKDMLDGLNFPPKFVHWIMECVSTPSYSLRINGEMHGFFKGQRGLRQGDPL 1109
            A+D++ W F+ + L   N PP+FV+WI +C+++ S+S+ ++G + G+FKG +GLRQGDPL
Sbjct: 596  AFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPL 655

Query: 1108 SPFLFVICVEYFSRSLNRAAKNAHFSYHPKCGGLKISHXXXXXXXXXXXXXXASSVGILL 929
            SP LFVI +E  SR L     +    YHPK   ++IS               ASS+  + 
Sbjct: 656  SPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIK 715

Query: 928  STLTDFGNKSGLRANALKSSIFTAGIQGREKQVVLEAANIPIGHMPFRYLGIPIVAEKLK 749
            S L  F N SGL  N  KS+++TAG++  +K+  L A     G  PFRYLG+P++  KL+
Sbjct: 716  SVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDTL-AFGFVNGTFPFRYLGLPLLHRKLR 774

Query: 748  VCQYGLLIDKIHSYLKTWTAKNLSHAGKLELIQAVLQGTECLWFSVLPVPCAVMDKIISI 569
               Y  LIDKI +    W  K LS AG+L+LI +V+  T   W S   +P   +  I  +
Sbjct: 775  RSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQM 834

Query: 568  CRSFLWG 548
            C  FLWG
Sbjct: 835  CNRFLWG 841



 Score = 79.3 bits (194), Expect(2) = e-147
 Identities = 66/259 (25%), Positives = 99/259 (38%), Gaps = 82/259 (31%)
 Frame = -2

Query: 533  VAWKDLCLPKSEGGLGLRELKTWNNSLLAKVLWNINAKKDSLWIRWIDQVYLHGVSIWDV 354
            V+W++ CLPK+EGGLGLR   TWN +L  +++W + A++DSLW+ W     L  V+ W+ 
Sbjct: 852  VSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNA 911

Query: 353  QNKKDHSPLMKRILQIR-------------NQLL----------------------QMEG 279
            +    HS + K IL +R              QLL                      Q+ G
Sbjct: 912  EAASHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHWSNLGPLIEAIGASGPQLTG 971

Query: 278  SCTAAITRIES----WM---------RLGNFSSSL-------------AYEWLRPKGTKT 177
               +A+    S    W+          L N  S+L              Y W     + T
Sbjct: 972  IHESAVVTEASSSTGWILPSARTRNASLANLRSTLLNSPAPSGDRGEDTYTWYIEGSSST 1031

Query: 176  IWIKQIWKEYIPPKYSFNLWLAA------------------KSRLQTRDRLSFQDNTE-- 57
             +  ++  E +  + +  LW AA                   +RL  R R +        
Sbjct: 1032 SFSSKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPS 1091

Query: 56   -CCLCNNATESHRHLFFQC 3
             CC+C   TE+  HLF  C
Sbjct: 1092 LCCVCQRETETRDHLFIHC 1110


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  452 bits (1162), Expect(2) = e-138
 Identities = 256/709 (36%), Positives = 398/709 (56%), Gaps = 15/709 (2%)
 Frame = -3

Query: 2632 GDFNCVMKASERLNGTEVS-SYETRDLLQCCLSAGLSDLNSIGSFHTWTNNT----VLCK 2468
            GDFN V+   E  N   ++     RD   C     LSDL   G+  TW N +    +  K
Sbjct: 3    GDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIAKK 62

Query: 2467 LDRAMANEAW---FSSNHAGMANFLPSGCLSDHSPCIVALFQHSRPTKKNFKFFNMWCDH 2297
            LDR +AN++W   + S+H    N       SDH  C V L  +    K+ FKFFN    +
Sbjct: 63   LDRILANDSWCNLYPSSHGLFGNL----DFSDHVSCGVVLEANGISAKRPFKFFNFLLKN 118

Query: 2296 ADFEQLISEHW-EEPIHGTKQFTLCKKLKRLKGPLKALNKKHFSHISSRAEKARNDFD-- 2126
             DF  ++ ++W    + G+  + + KKLK +K P+K  ++ ++S I  R ++A       
Sbjct: 119  EDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITC 178

Query: 2125 QALEEFHLQPANTALQLQIADLKLKARSLSEAERSFYFQQAKCKHLTYSDRGTKFFHSLV 1946
            Q L   +   +N AL+L+    + K   LS AE SF+ Q+++       D  T +FH +V
Sbjct: 179  QNLTLANPSVSNAALELEA---QRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMV 235

Query: 1945 KRNTKRNHIAAITKMDGTVTTSSCEVVKEFLDFYDNLLGTEGDCQPINLEICQDGPLIT- 1769
                  N I ++   +G +  S   ++   + +Y+ LLG+     P ++E      L+T 
Sbjct: 236  DSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIES--PFSMEQEDMNLLLTY 293

Query: 1768 ---QNQSRDLLRPISIDEIKSALFSIGDDKSPGPDGYTAQFYKKAWNIVGVQFSQAIMEF 1598
               Q+Q  +L +  + DEIK+A  S+  +K+ GPDGY+ +F++  W+I+G +   AI EF
Sbjct: 294  RCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEF 353

Query: 1597 FTSGSLLRMINHTVIALVPKSDHASTVGDFRPIACCNVTYKVIAKILADRLSVTLGTLID 1418
            F SG LL+  N T + L+PK+ +A T+ +FRPI+C N  YKVI+K+L  RL   L  +I 
Sbjct: 354  FDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIG 413

Query: 1417 KAQSAFVPGRSMLDNIHMVQELLKHYNRKRISPRCILKIDLKKAYDTICWDFLKDMLDGL 1238
             +QSAF+PGRS+ +N+ +  E++  YNR  ISPR +LK+DLKKA+D++ W+F+   L  L
Sbjct: 414  HSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRAL 473

Query: 1237 NFPPKFVHWIMECVSTPSYSLRINGEMHGFFKGQRGLRQGDPLSPFLFVICVEYFSRSLN 1058
              P ++++WI +C++TPS+++ +NG   GFF+  +GLRQGDPLSP+LFV+ +E FS+ L 
Sbjct: 474  AIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLY 533

Query: 1057 RAAKNAHFSYHPKCGGLKISHXXXXXXXXXXXXXXASSVGILLSTLTDFGNKSGLRANAL 878
                + +  YHPK G L ISH              +SS+  +  TL DF + SGL+ N  
Sbjct: 534  SRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKD 593

Query: 877  KSSIFTAGIQGREKQVVLEAANIPIGHMPFRYLGIPIVAEKLKVCQYGLLIDKIHSYLKT 698
            KS +F AG+   E+ +   A   P G  P RYLG+P++  KL++  YG L++K+ + L++
Sbjct: 594  KSQLFQAGLDLSER-ITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRS 652

Query: 697  WTAKNLSHAGKLELIQAVLQGTECLWFSVLPVPCAVMDKIISICRSFLW 551
            W +K LS AG+ +LI +V+ G    W S   +P   + KI S+C  FLW
Sbjct: 653  WVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLW 701



 Score = 69.7 bits (169), Expect(2) = e-138
 Identities = 64/263 (24%), Positives = 97/263 (36%), Gaps = 80/263 (30%)
 Frame = -2

Query: 551  GR**APVAWKDLCLPKSEGGLGL--------------------RELKTW-----NNSLLA 447
            GR  + V+W D CLPKSEGGLG                     R+   W     ++ L  
Sbjct: 707  GRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGH 766

Query: 446  KVLWNINAKKDSLW-------IRWIDQVYLHG-------VSIW---------------DV 354
               W +NA +   W       +R + + ++         VS W               DV
Sbjct: 767  ASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDV 826

Query: 353  QNKKDHSPLMKRILQ-------------------IRNQLLQMEGSCTAAITRIESW---- 243
             ++    P   ++                     I + L  +       ++   SW    
Sbjct: 827  GSRPLRIPFSAKVADAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDD 886

Query: 242  MRLGNFSSSLAYEWLRPKGTKTIWIKQIWKEYIPPKYSFNLWLAAKSRLQTRDRL---SF 72
            +    FS++  +E LRP+     W K +W +   PK++FN W A  +RL TR RL     
Sbjct: 887  VDCQGFSAAKTWEVLRPRRPVKRWAKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGL 946

Query: 71   QDNTECCLCNNATESHRHLFFQC 3
              + ECCLC+  TE+  HL   C
Sbjct: 947  VSSAECCLCSFDTETRDHLLLLC 969


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  452 bits (1162), Expect(2) = e-137
 Identities = 256/709 (36%), Positives = 398/709 (56%), Gaps = 15/709 (2%)
 Frame = -3

Query: 2632 GDFNCVMKASERLNGTEVS-SYETRDLLQCCLSAGLSDLNSIGSFHTWTNNT----VLCK 2468
            GDFN V+   E  N   ++     RD   C     LSDL   G+  TW N +    +  K
Sbjct: 3    GDFNQVLLPQEHSNPPSLNIDRRMRDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIAKK 62

Query: 2467 LDRAMANEAW---FSSNHAGMANFLPSGCLSDHSPCIVALFQHSRPTKKNFKFFNMWCDH 2297
            LDR +AN++W   + S+H    N       SDH  C V L  +    K+ FKFFN    +
Sbjct: 63   LDRILANDSWCNLYPSSHGLFGNL----DFSDHVSCGVVLEANGISAKRPFKFFNFLLKN 118

Query: 2296 ADFEQLISEHW-EEPIHGTKQFTLCKKLKRLKGPLKALNKKHFSHISSRAEKARNDFD-- 2126
             DF  ++ ++W    + G+  + + KKLK +K P+K  ++ ++S I  R ++A       
Sbjct: 119  EDFLNVVMDNWFSTNVVGSSMYRVSKKLKAMKKPIKDFSRLNYSGIELRTKEAHELLITC 178

Query: 2125 QALEEFHLQPANTALQLQIADLKLKARSLSEAERSFYFQQAKCKHLTYSDRGTKFFHSLV 1946
            Q L   +   +N AL+L+    + K   LS AE SF+ Q+++       D  T +FH +V
Sbjct: 179  QNLTLANPSVSNAALELEA---QRKWVLLSCAEESFFHQRSRVSWFAEGDSNTHYFHRMV 235

Query: 1945 KRNTKRNHIAAITKMDGTVTTSSCEVVKEFLDFYDNLLGTEGDCQPINLEICQDGPLIT- 1769
                  N I ++   +G +  S   ++   + +Y+ LLG+     P ++E      L+T 
Sbjct: 236  DSRKSFNTINSLVDSNGLLIDSQQGILDHCVTYYERLLGSIES--PFSMEQEDMNLLLTY 293

Query: 1768 ---QNQSRDLLRPISIDEIKSALFSIGDDKSPGPDGYTAQFYKKAWNIVGVQFSQAIMEF 1598
               Q+Q  +L +  + DEIK+A  S+  +K+ GPDGY+ +F++  W+I+G +   AI EF
Sbjct: 294  RCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEF 353

Query: 1597 FTSGSLLRMINHTVIALVPKSDHASTVGDFRPIACCNVTYKVIAKILADRLSVTLGTLID 1418
            F SG LL+  N T + L+PK+ +A T+ +FRPI+C N  YKVI+K+L  RL   L  +I 
Sbjct: 354  FDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIG 413

Query: 1417 KAQSAFVPGRSMLDNIHMVQELLKHYNRKRISPRCILKIDLKKAYDTICWDFLKDMLDGL 1238
             +QSAF+PGRS+ +N+ +  E++  YNR  ISPR +LK+DLKKA+D++ W+F+   L  L
Sbjct: 414  HSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRAL 473

Query: 1237 NFPPKFVHWIMECVSTPSYSLRINGEMHGFFKGQRGLRQGDPLSPFLFVICVEYFSRSLN 1058
              P ++++WI +C++TPS+++ +NG   GFF+  +GLRQGDPLSP+LFV+ +E FS+ L 
Sbjct: 474  AIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLY 533

Query: 1057 RAAKNAHFSYHPKCGGLKISHXXXXXXXXXXXXXXASSVGILLSTLTDFGNKSGLRANAL 878
                + +  YHPK G L ISH              +SS+  +  TL DF + SGL+ N  
Sbjct: 534  SRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKD 593

Query: 877  KSSIFTAGIQGREKQVVLEAANIPIGHMPFRYLGIPIVAEKLKVCQYGLLIDKIHSYLKT 698
            KS +F AG+   E+ +   A   P G  P RYLG+P++  KL++  YG L++K+ + L++
Sbjct: 594  KSQLFQAGLDLSER-ITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRS 652

Query: 697  WTAKNLSHAGKLELIQAVLQGTECLWFSVLPVPCAVMDKIISICRSFLW 551
            W +K LS AG+ +LI +V+ G    W S   +P   + KI S+C  FLW
Sbjct: 653  WVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLW 701



 Score = 68.6 bits (166), Expect(2) = e-137
 Identities = 63/263 (23%), Positives = 97/263 (36%), Gaps = 80/263 (30%)
 Frame = -2

Query: 551  GR**APVAWKDLCLPKSEGGLGL--------------------RELKTW-----NNSLLA 447
            GR  + V+W D CLPKSEGGLG                     R+   W     ++ L  
Sbjct: 707  GRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGH 766

Query: 446  KVLWNINAKKDSLW-------IRWIDQVYLHG-------VSIW---------------DV 354
               W +NA +   W       +R + + ++         VS W               DV
Sbjct: 767  ASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDV 826

Query: 353  QNKKDHSPLMKRILQ-------------------IRNQLLQMEGSCTAAITRIESW---- 243
             ++    P   ++                     I + L  +       ++   SW    
Sbjct: 827  GSRPLRIPFSAKVADAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDD 886

Query: 242  MRLGNFSSSLAYEWLRPKGTKTIWIKQIWKEYIPPKYSFNLWLAAKSRLQTRDRL---SF 72
            +    FS++  +E LRP+     W + +W +   PK++FN W A  +RL TR RL     
Sbjct: 887  VDCQGFSAAKTWEVLRPRRPVKRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGL 946

Query: 71   QDNTECCLCNNATESHRHLFFQC 3
              + ECCLC+  TE+  HL   C
Sbjct: 947  VSSAECCLCSFDTETRDHLLLLC 969


>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 910

 Score =  462 bits (1189), Expect(2) = e-136
 Identities = 284/847 (33%), Positives = 449/847 (53%), Gaps = 16/847 (1%)
 Frame = -3

Query: 3043 MRIASWNIRGLNLPLKQNGVRHLIKEHRIDVLAVLETKINDVKCSRIMRNKFGGWNHFHN 2864
            M++  WNIRGLN   +Q  VR  I  + + V   LET +     + ++ +   GW    N
Sbjct: 1    MKVFCWNIRGLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSN 60

Query: 2863 FHLHNAGRILIIWDPSTTILEPIILDAQFILARAICKVTAL--SFHICFIYGFHTVVSRR 2690
            +     GRI I+WDPS ++L  +      I+  +I K+ +L  SF + F+YG ++ + RR
Sbjct: 61   YCCSELGRIWIVWDPSISVL--VFKRTDQIMFCSI-KIPSLLQSFAVAFVYGRNSELDRR 117

Query: 2689 PLWDTXXXXXXXXXXXXXL----GDFNCVMKASERLN-GTEVSSYETRDLLQCCL-SAGL 2528
             LW+                   GDFN +  ASE  +    + +    + LQCCL  + L
Sbjct: 118  SLWEDILVLSRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQL 177

Query: 2527 SDLNSIGSFHTWTN----NTVLCKLDRAMANEAWFSSNHAGMANFLPSGCLSDHSPCIVA 2360
            SDL S G F TW+N    N +L KLDRA+AN  WF+   + +A F P G  SDH+PCI+ 
Sbjct: 178  SDLPSRGVFFTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGD-SDHAPCIIL 236

Query: 2359 LFQHSRPTKKNFKFFNMWCDHADFEQLISEHWE-EPIHGTKQFTLCKKLKRLKGPLKALN 2183
            +     P+KK+FK+F+    H  +   +S  WE   + G+  F+L + LK  K   + LN
Sbjct: 237  IDNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEANTLVGSHMFSLRQHLKVAKLCCRTLN 296

Query: 2182 KKHFSHISSRAEKARNDFDQALEEFHLQPANTALQLQIADLKLKARSLSEAERSFYFQQA 2003
            +  FS+I  R  ++    +    E    P++T  + +    K +    + A  SF+ Q++
Sbjct: 297  RLRFSNIQQRTAQSLTRLEDIQVELLTSPSDTLFRREHVARK-QWIFFAAALESFFRQKS 355

Query: 2002 KCKHLTYSDRGTKFFHSLVKRNTKRNHIAAITKMDGTVTTSSCEVVKEFLDFYDNLLGTE 1823
            + + L   D  T+FFH  V  +   N I  +   DG    +  ++    + +Y +LLG  
Sbjct: 356  RIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIP 415

Query: 1822 GD-CQPINLEICQDG-PLITQNQSRDLLRPI-SIDEIKSALFSIGDDKSPGPDGYTAQFY 1652
             +   P ++E  +   P    +     L  I S +EI   LFS+  +K+PGPDG+  +F+
Sbjct: 416  SENVTPFSVEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFF 475

Query: 1651 KKAWNIVGVQFSQAIMEFFTSGSLLRMINHTVIALVPKSDHASTVGDFRPIACCNVTYKV 1472
             +AW IV      AI EFF SG+L R  N T I L+PK   A  +  FRP+ACC   YKV
Sbjct: 476  IEAWAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKV 535

Query: 1471 IAKILADRLSVTLGTLIDKAQSAFVPGRSMLDNIHMVQELLKHYNRKRISPRCILKIDLK 1292
            I +I++ RL + +   +   Q  F+ GR + +N+ +  EL+ ++     + R  L++D+ 
Sbjct: 536  ITRIISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDIS 595

Query: 1291 KAYDTICWDFLKDMLDGLNFPPKFVHWIMECVSTPSYSLRINGEMHGFFKGQRGLRQGDP 1112
            KAYD + W+FL ++L  L+ P  F+HWI  C+S+ SYS+  NGE+ GFF+G++G+RQGDP
Sbjct: 596  KAYDNVNWEFLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDP 655

Query: 1111 LSPFLFVICVEYFSRSLNRAAKNAHFSYHPKCGGLKISHXXXXXXXXXXXXXXASSVGIL 932
            +S  LFV+ ++  S+SL+  A N  F+ HP C    I+H              ASS+  +
Sbjct: 656  MSSHLFVLVMDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGI 715

Query: 931  LSTLTDFGNKSGLRANALKSSIFTAGIQGREKQVVLEAANIPIGHMPFRYLGIPIVAEKL 752
            L+ L DF   SGL  N  K+ +   G      + + +   I  G +P RYLG+P++++K+
Sbjct: 716  LTILDDFRQGSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKM 775

Query: 751  KVCQYGLLIDKIHSYLKTWTAKNLSHAGKLELIQAVLQGTECLWFSVLPVPCAVMDKIIS 572
            +   Y  L+D+I+S   +WTA++LS AG+L+L+++V+  T   W SV   P   + K+  
Sbjct: 776  RRQDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINFWASVFIFPNQCLQKLEQ 835

Query: 571  ICRSFLW 551
            +C +FLW
Sbjct: 836  MCNAFLW 842



 Score = 55.5 bits (132), Expect(2) = e-136
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = -2

Query: 539 APVAWKDLCLPKSEGGLGLRELKTWNNSLLAKVLWNINAKKDSLWIRWI 393
           A ++W  +C PK  GGLGL+ L +WN  L  K++W +     SLW+ W+
Sbjct: 852 AKISWNIVCSPKEAGGLGLKRLSSWNRILALKLIWLLFTSAGSLWVSWV 900


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  444 bits (1142), Expect(2) = e-130
 Identities = 276/849 (32%), Positives = 431/849 (50%), Gaps = 19/849 (2%)
 Frame = -3

Query: 3040 RIASWNIRGLNLPLKQNGVRHLIKEHRIDVLAVLETKINDVKCSRIMRNKFGGWNHFHNF 2861
            ++  WN+RG N+   + G +     ++     ++ET +   K  + + N   GW+   N+
Sbjct: 4    KLFCWNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENY 63

Query: 2860 HLHNAGRILIIWDPSTTILEPIILDAQFILARAICKVTALSFHICFIYGFHTVVSRRPLW 2681
                 G+I ++WDPS  ++  I    Q I    +   +   F +  +Y  +   +R+ LW
Sbjct: 64   EFSVLGKIWVLWDPSVKVVV-IGRSLQMITCELLLPDSPSWFVVSIVYASNEEGTRKELW 122

Query: 2680 DTXXXXXXXXXXXXXL----GDFNCVMKASERLNGTEVSSYETRDLLQCCLSAGLSDLNS 2513
            +                   GDFN ++     +N       + R    C L + L DL  
Sbjct: 123  NELVQLALSPVVVGRSWIVLGDFNQILNPESAINAN--IGRKIRAFRSCLLDSDLYDLVY 180

Query: 2512 IGSFHTWTNNT----VLCKLDRAMANEAWFSSNHAGMANFLPSGCLSDHSPCIVALFQHS 2345
             GS +TW N      +  K+DR + N+ W +   +  ANF      SDHS C V L    
Sbjct: 181  KGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPD-FSDHSSCEVVLDPAV 239

Query: 2344 RPTKKNFKFFNMWCDHADFEQLISEHWEE-PIHGTKQFTLCKKLKRLKGPLKALNKKHFS 2168
               K+ F+FFN +  + DF QLI E+W    + G+  + + KKLK LK P+   +++++S
Sbjct: 240  LKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYS 299

Query: 2167 HISSRAEKARNDFDQALEEFHLQPANTALQLQIADLKLKARSLSEAERSFYFQQAKCKHL 1988
             I  R  +A              P+     L++   + K + L++AE SF+ Q++    L
Sbjct: 300  DIEKRVSEAHAIVLHRQRITLTNPSVVHATLELEATR-KWQILAKAEESFFCQKSSISWL 358

Query: 1987 TYSDRGTKFFHSLVKRNTKRNHIAAITKMDGTVTTSSC---EVVKEF-LDFYDNLL-GTE 1823
               D  T +FH +       N I  +    G    +     E +KE   +F+++LL G E
Sbjct: 359  YEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVE 418

Query: 1822 GDCQPINLEICQDGPLITQ-----NQSRDLLRPISIDEIKSALFSIGDDKSPGPDGYTAQ 1658
            G+    N     D  L+       +Q  DL R  S  +I+ A FS+  +K+ GPDGY+++
Sbjct: 419  GE----NSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSE 474

Query: 1657 FYKKAWNIVGVQFSQAIMEFFTSGSLLRMINHTVIALVPKSDHASTVGDFRPIACCNVTY 1478
            F+K  W +VG + ++A+ EFF SG LL+  N T + L+PK  ++S + DFRPI+C N  Y
Sbjct: 475  FFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLY 534

Query: 1477 KVIAKILADRLSVTLGTLIDKAQSAFVPGRSMLDNIHMVQELLKHYNRKRISPRCILKID 1298
            KVIAK+L  RL   L  +I  +QSAF+PGR + +N+ +  E++  YN K IS R +LK+D
Sbjct: 535  KVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVD 594

Query: 1297 LKKAYDTICWDFLKDMLDGLNFPPKFVHWIMECVSTPSYSLRINGEMHGFFKGQRGLRQG 1118
            L+KA+D++ WDF+      L  P KFV WI +C+STP +S+ +NG   GFFK  +GLRQG
Sbjct: 595  LRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQG 654

Query: 1117 DPLSPFLFVICVEYFSRSLNRAAKNAHFSYHPKCGGLKISHXXXXXXXXXXXXXXASSVG 938
            DPLSP+LFV+ +E FS  L       +  YHPK   L ISH              +SS+ 
Sbjct: 655  DPLSPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLH 714

Query: 937  ILLSTLTDFGNKSGLRANALKSSIFTAGIQGREKQVVLEAANIPIGHMPFRYLGIPIVAE 758
             +   L DF + SGL  N  K++++ AG    E  + +     PI  +P RYLG+P+++ 
Sbjct: 715  GISEALDDFASWSGLHVNKDKTNLYLAGTDEVE-ALAISHYGFPISTLPIRYLGLPLMSR 773

Query: 757  KLKVCQYGLLIDKIHSYLKTWTAKNLSHAGKLELIQAVLQGTECLWFSVLPVPCAVMDKI 578
            KLK+ +Y L+        ++W  K+LS AG+++LI +V+ G    W S   +    + KI
Sbjct: 774  KLKISEYELV-----KRFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKI 828

Query: 577  ISICRSFLW 551
             S+C  FLW
Sbjct: 829  ESLCSRFLW 837



 Score = 53.5 bits (127), Expect(2) = e-130
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = -2

Query: 539 APVAWKDLCLPKSEGGLGLRELKTWNNSLLAKVLWNINAKKDSLW 405
           A +AW  +CLPK+EGG+GLR    WN +   + +W + A  D LW
Sbjct: 847 AKIAWSGVCLPKNEGGVGLRRFTPWNKTFYLRFIWPLFADNDVLW 891


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  444 bits (1143), Expect(2) = e-130
 Identities = 276/849 (32%), Positives = 431/849 (50%), Gaps = 19/849 (2%)
 Frame = -3

Query: 3040 RIASWNIRGLNLPLKQNGVRHLIKEHRIDVLAVLETKINDVKCSRIMRNKFGGWNHFHNF 2861
            ++  WN+RG N+   + G +     ++     ++ET +   K  + + N   GW+   N+
Sbjct: 4    KLFCWNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENY 63

Query: 2860 HLHNAGRILIIWDPSTTILEPIILDAQFILARAICKVTALSFHICFIYGFHTVVSRRPLW 2681
                 G+I ++WDPS  ++  I    Q I    +   +   F +  +Y  +   +R+ LW
Sbjct: 64   EFSVLGKIWVLWDPSVKVVV-IGRSLQMITCELLLPDSPSWFVVSIVYASNEEGTRKELW 122

Query: 2680 DTXXXXXXXXXXXXXL----GDFNCVMKASERLNGTEVSSYETRDLLQCCLSAGLSDLNS 2513
            +                   GDFN ++     +N       + R    C L + L DL  
Sbjct: 123  NELVQLALSPVVVGRSWIVLGDFNQILNPESAINAN--IGRKIRAFRSCLLDSDLYDLVY 180

Query: 2512 IGSFHTWTNNT----VLCKLDRAMANEAWFSSNHAGMANFLPSGCLSDHSPCIVALFQHS 2345
             GS +TW N      +  K+DR + N+ W +   +  ANF      SDHS C V L    
Sbjct: 181  KGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAYANFGEPD-FSDHSSCEVVLDPAV 239

Query: 2344 RPTKKNFKFFNMWCDHADFEQLISEHWEE-PIHGTKQFTLCKKLKRLKGPLKALNKKHFS 2168
               K+ F+FFN +  + DF QLI E+W    + G+  + + KKLK LK P+   +++++S
Sbjct: 240  LKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMYRVSKKLKHLKLPICCFSRENYS 299

Query: 2167 HISSRAEKARNDFDQALEEFHLQPANTALQLQIADLKLKARSLSEAERSFYFQQAKCKHL 1988
             I  R  +A              P+     L++   + K + L++AE SF+ Q++    L
Sbjct: 300  DIEKRVSEAHAIVLHRQRITLTNPSVVHATLELEATR-KWQILAKAEESFFCQKSSISWL 358

Query: 1987 TYSDRGTKFFHSLVKRNTKRNHIAAITKMDGTVTTSSC---EVVKEF-LDFYDNLL-GTE 1823
               D  T +FH +       N I  +    G    +     E +KE   +F+++LL G E
Sbjct: 359  YEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFESLLCGVE 418

Query: 1822 GDCQPINLEICQDGPLITQ-----NQSRDLLRPISIDEIKSALFSIGDDKSPGPDGYTAQ 1658
            G+    N     D  L+       +Q  DL R  S  +I+ A FS+  +K+ GPDGY+++
Sbjct: 419  GE----NSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSE 474

Query: 1657 FYKKAWNIVGVQFSQAIMEFFTSGSLLRMINHTVIALVPKSDHASTVGDFRPIACCNVTY 1478
            F+K  W +VG + ++A+ EFF SG LL+  N T + L+PK  ++S + DFRPI+C N  Y
Sbjct: 475  FFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLY 534

Query: 1477 KVIAKILADRLSVTLGTLIDKAQSAFVPGRSMLDNIHMVQELLKHYNRKRISPRCILKID 1298
            KVIAK+L  RL   L  +I  +QSAF+PGR + +N+ +  E++  YN K IS R +LK+D
Sbjct: 535  KVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVD 594

Query: 1297 LKKAYDTICWDFLKDMLDGLNFPPKFVHWIMECVSTPSYSLRINGEMHGFFKGQRGLRQG 1118
            L+KA+D++ WDF+      L  P KFV WI +C+STP +S+ +NG   GFFK  +GLRQG
Sbjct: 595  LRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQG 654

Query: 1117 DPLSPFLFVICVEYFSRSLNRAAKNAHFSYHPKCGGLKISHXXXXXXXXXXXXXXASSVG 938
            DPLSP+LFV+ +E FS  L       +  YHPK   L ISH              +SS+ 
Sbjct: 655  DPLSPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLH 714

Query: 937  ILLSTLTDFGNKSGLRANALKSSIFTAGIQGREKQVVLEAANIPIGHMPFRYLGIPIVAE 758
             +   L DF + SGL  N  K++++ AG    E  + +     PI  +P RYLG+P+++ 
Sbjct: 715  GISEALDDFASWSGLHVNKDKTNLYLAGTDEVE-ALAISHYGFPISTLPIRYLGLPLMSR 773

Query: 757  KLKVCQYGLLIDKIHSYLKTWTAKNLSHAGKLELIQAVLQGTECLWFSVLPVPCAVMDKI 578
            KLK+ +Y L+        ++W  K+LS AG+++LI +V+ G    W S   +    + KI
Sbjct: 774  KLKISEYELV-----KRFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKI 828

Query: 577  ISICRSFLW 551
             S+C  FLW
Sbjct: 829  ESLCSRFLW 837



 Score = 51.2 bits (121), Expect(2) = e-130
 Identities = 19/45 (42%), Positives = 27/45 (60%)
 Frame = -2

Query: 539 APVAWKDLCLPKSEGGLGLRELKTWNNSLLAKVLWNINAKKDSLW 405
           A +AW  +CLPK+EGG+ LR    WN +   + +W + A  D LW
Sbjct: 847 AKIAWSGVCLPKNEGGVALRRFTPWNKTFYLRFIWPLFADNDVLW 891


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  412 bits (1058), Expect(2) = e-129
 Identities = 250/751 (33%), Positives = 395/751 (52%), Gaps = 21/751 (2%)
 Frame = -3

Query: 2731 ICFIYGFHTVVSRRPLWDTXXXXXXXXXXXXXL----GDFNCVMKASERLNGTEVSSYET 2564
            +  +Y  +  ++R+ LW+                   GDFN V+  +E    T ++    
Sbjct: 55   VSIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLNVNRR 114

Query: 2563 RDLLQCCL-SAGLSDLNSIGSFHTWTNNT----VLCKLDRAMANEAWFSSNHAGMANFLP 2399
              + + CL  A L DL   G+  TW N +    V  KLDR + NE+W S   +  A F  
Sbjct: 115  MKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPVAKKLDRILVNESWCSRFPSAYAVFGE 174

Query: 2398 SGCLSDHSPCIVALFQHSRPTKKNFKFFNMWCDHADFEQLISEHWEE-PIHGTKQFTLCK 2222
                SDH+ C V +       K+ F+F+N    + DF  L+ E W    + G+  F + K
Sbjct: 175  PD-FSDHASCGVIINPLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSK 233

Query: 2221 KLKRLKGPLKALNKKHFSHISSRAEKARNDFDQALEEFHLQPA--NTALQLQIADLKLKA 2048
            KLK LK P++  + ++FS++  R ++A N       +    P   N AL+++    + K 
Sbjct: 234  KLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAALEMEA---QRKW 290

Query: 2047 RSLSEAERSFYFQQAKCKHLTYSDRGTKFFHSLVKRNTKRNHIAAITKMDGTVTTSSCEV 1868
              L +AE SF+ Q+++   +   D  T +FH +       N I  I   +G    +   +
Sbjct: 291  LILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQLGI 350

Query: 1867 VKEFLDFYDNLLGTEGDCQPINLEICQDGPLI-----TQNQSRDLLRPISIDEIKSALFS 1703
             +  ++++ NLLG  G+  P  L I +D  L+     + +Q ++L    S  +IKSA FS
Sbjct: 351  KEHCIEYFSNLLG--GEVGPPML-IQEDFDLLLPFRCSHDQKKELAMSFSRQDIKSAFFS 407

Query: 1702 IGDDKSPGPDGYTAQFYKKAWNIVGVQFSQAIMEFFTSGSLLRMINHTVIALVPKSDHAS 1523
               +K+ GPDG+  +F+K+ W+++G + + A+ EFFTS  LL+  N T + L+PK  +AS
Sbjct: 408  FPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNAS 467

Query: 1522 TVGDFRPIACCN----VTYKVIAKILADRLSVTLGTLIDKAQSAFVPGRSMLDNIHMVQE 1355
             + DFRPI+C +      YKVIA++L +RL   L  +I   QSAF+PGR + +N+ +  E
Sbjct: 468  KMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATE 527

Query: 1354 LLKHYNRKRISPRCILKIDLKKAYDTICWDFLKDMLDGLNFPPKFVHWIMECVSTPSYSL 1175
            L++ YNR+ I PR +LK+DL+KA+D+I WDF+   L  +  P +FV+WI +C+STP++S+
Sbjct: 528  LVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSV 587

Query: 1174 RINGEMHGFFKGQRGLRQGDPLSPFLFVICVEYFSRSLNRAAKNAHFSYHPKCGGLKISH 995
             +NG   GFFK  RGLRQG+PLSPFLFV+ +E FS  LN   +  +  YHPK   L ISH
Sbjct: 588  CVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHPKTSPLSISH 647

Query: 994  XXXXXXXXXXXXXXASSVGILLSTLTDFGNKSGLRANALKSSIFTAGIQGREKQVVLEAA 815
                          +SS+  +   L DF   SGL  N  K+ ++ AG+        +EA+
Sbjct: 648  LMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGLDR------IEAS 701

Query: 814  NIPIGHMPFRYLGIPIVAEKLKVCQYGLLIDKIHSYLKTWTAKNLSHAGKLELIQAVLQG 635
             I               A KL++ +YG L++K+    ++W+ K LS AG+++LI +V+ G
Sbjct: 702  TI---------------ARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIASVISG 746

Query: 634  TECLWFSVLPVPCAVMDKIISICRSFLWGVN 542
                W S   +P   + +I ++C  FLW  N
Sbjct: 747  IINFWISTFILPKGCVKRIEALCARFLWSGN 777



 Score = 80.5 bits (197), Expect(2) = e-129
 Identities = 62/205 (30%), Positives = 93/205 (45%), Gaps = 26/205 (12%)
 Frame = -2

Query: 539  APVAWKDLCLPKSEGGLGLRELKTWNNSLLAKVLWNINAKKDSLWI-RW--IDQVY-LHG 372
            A VAW ++CLPK EGG+GLR     N +L     W+   KK S W   W  +  ++ L G
Sbjct: 784  AKVAWSEVCLPKEEGGVGLRRFTVLNTTL-----WD--GKKISFWFDNWSPLGPLFKLFG 836

Query: 371  VS-----IWDVQNKKDHS----------PLMKRILQIRNQLLQMEGSCTAAITRIESWM- 240
             S        +Q K   +          P   + L +   L  +   C  +      W+ 
Sbjct: 837  SSGPRALCIPIQAKVADACSDVGWLISPPRTDQALALLIHLTTIALPCFDSSPDTFVWIV 896

Query: 239  ---RLGNFSSSLAYEWLRPKGTKTIWIKQIWKEYIPPKYSFNLWLAAKSRLQTRDRLS-- 75
                   FS++  +E +RPK     W K +W +   PK++FN+W++  +RL TR RL+  
Sbjct: 897  DDFTCHGFSAARTWEAMRPKKPVKDWTKSVWFKGSVPKHAFNMWVSHLNRLPTRQRLAAW 956

Query: 74   -FQDNTECCLCNNATESHRHLFFQC 3
                 T+CCLC++  ES  HL   C
Sbjct: 957  GVTTTTDCCLCSSRPESRDHLLLYC 981


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  424 bits (1089), Expect(2) = e-127
 Identities = 254/752 (33%), Positives = 397/752 (52%), Gaps = 25/752 (3%)
 Frame = -3

Query: 2731 ICFIYGFHTVVSRRPLW----DTXXXXXXXXXXXXXLGDFNCVMKASERLNGTEVS-SYE 2567
            + F+Y     V+R+ LW    D              LGDFN ++  SE       +    
Sbjct: 3    LSFVYASTDEVTRQILWNEIVDFSNDPCVIDKPWTVLGDFNQILHPSEHSTSDGFNVDRP 62

Query: 2566 TRDLLQCCLSAGLSDLNSIGSFHTWTNNT----VLCKLDRAMANEAWFSSNHAGMANFLP 2399
            TR   +  L A L+DL+  G+  TW N      V  KLDR + N+ W ++  + +  F  
Sbjct: 63   TRIFRETILLASLTDLSFRGNTFTWWNKRSRAPVAKKLDRILVNDKWTTTFPSSLGLFGE 122

Query: 2398 SGCLSDHSPCIVALFQHSRPTKKNFKFFNMWCDHADFEQLISEHW-EEPIHGTKQFTLCK 2222
                SDHS C ++L   S  +KK F+F N      +F  LI   W    + G+  + +  
Sbjct: 123  PD-FSDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRVSV 181

Query: 2221 KLKRLKGPLKALNKKHFSHISSRAEKARNDFDQALEEFHLQP--ANTALQLQIADLKLKA 2048
            KLK LK  ++  ++ ++S I  R ++A +    A       P  +N A++   A+ + K 
Sbjct: 182  KLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQSVLLASPCPSNAAIE---AETQRKW 238

Query: 2047 RSLSEAERSFYFQQAKCKHLTYSDRGTKFFHSLVKRNTKRNHIAAITKMDGTVTTSSCEV 1868
            R L+EAE SF++Q+++   L   D  + +FH +       NHI  ++   G        +
Sbjct: 239  RILAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNL 298

Query: 1867 VKEFLDFYDNLLGTEGDCQPINLEICQDGPLITQNQSRDLLR-------------PISID 1727
                ++++ + LG+E           Q  PL  Q    +LL              P S +
Sbjct: 299  ENHCVEYFQSNLGSE-----------QGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSE 347

Query: 1726 EIKSALFSIGDDKSPGPDGYTAQFYKKAWNIVGVQFSQAIMEFFTSGSLLRMINHTVIAL 1547
            +IK+A FS+  +K+ GPDG++ +F+   W I+G + ++AI EFFTSG LL+  N T + L
Sbjct: 348  QIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVL 407

Query: 1546 VPKSDHASTVGDFRPIACCNVTYKVIAKILADRLSVTLGTLIDKAQSAFVPGRSMLDNIH 1367
            +PK  +AS++ DFRPI+C N  YKVI+K+L DRL   L   I  +QSAF+PGR  L+N+ 
Sbjct: 408  IPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVL 467

Query: 1366 MVQELLKHYNRKRISPRCILKIDLKKAYDTICWDFLKDMLDGLNFPPKFVHWIMECVSTP 1187
            +  EL+  YN+K I+P  +LK+DL+KA+D++ WDF+   L  LN P KF  WI+EC+ST 
Sbjct: 468  LATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTA 527

Query: 1186 SYSLRINGEMHGFFKGQRGLRQGDPLSPFLFVICVEYFSRSLNRAAKNAHFSYHPKCGGL 1007
            S+S+ +NG   G F   +GLRQGDP+SP+LFV+ +E FS  L     + + +YHPK   L
Sbjct: 528  SFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQL 587

Query: 1006 KISHXXXXXXXXXXXXXXASSVGILLSTLTDFGNKSGLRANALKSSIFTAGIQGREKQVV 827
            +ISH              +SS+  ++ +L DF   SGL  N  K+ ++ AG+   E    
Sbjct: 588  EISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESD-S 646

Query: 826  LEAANIPIGHMPFRYLGIPIVAEKLKVCQYGLLIDKIHSYLKTWTAKNLSHAGKLELIQA 647
            + +    +G +P RYLG+P+++ KL + +Y  LI+KI +   +W  + LS AG+++L+ +
Sbjct: 647  MASYGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLAS 706

Query: 646  VLQGTECLWFSVLPVPCAVMDKIISICRSFLW 551
            V+ G    W S   +P   + KI S+C  FLW
Sbjct: 707  VISGIVNFWISSFILPLGCIKKIESLCSRFLW 738



 Score = 60.8 bits (146), Expect(2) = e-127
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
 Frame = -2

Query: 539 APVAWKDLCLPKSEGGLGLRELKTWNNSLLAKVLWNINAKKDSLWIRWIDQVYL-HGVSI 363
           A VAW  +CLPK+EGG+GLR     N +L  +++W + +   SLW+ W  Q  L    S 
Sbjct: 748 AKVAWSQVCLPKAEGGIGLRRFAVSNRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSF 807

Query: 362 WDVQNKKDHSPLMKRILQIR 303
           W+   K   S   K +L++R
Sbjct: 808 WNQPEKPHDSWNWKCLLRLR 827


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  460 bits (1184), Expect = e-126
 Identities = 275/887 (31%), Positives = 450/887 (50%), Gaps = 25/887 (2%)
 Frame = -3

Query: 3028 WNIRGLNLPLKQNGVRHLIKEHRIDVLAVLETKINDVKCSRIMRNKFGGWNHFHNFHLHN 2849
            WN+RGLN   K + ++  I+E+      ++ET++ + K S+++   F  W+   N+  + 
Sbjct: 6    WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65

Query: 2848 AGRILIIWDPSTTILEPIILDAQFILARAICKVTALSFHICFIYGFHTVVSRRPLW---- 2681
             GRI ++W  +   L PI    Q +      +     F   F+Y  + V  R+ LW    
Sbjct: 66   RGRIWVLWRKNVR-LSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELK 124

Query: 2680 DTXXXXXXXXXXXXXLGDFNCVMKASERLNGT--EVSSYETRDLLQCCLSAGLSDLNSIG 2507
            D              LGDFN  +  +E        + +   RD  Q      L+D+ + G
Sbjct: 125  DHYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPMVTPGMRDFQQVINYCSLTDMAAQG 184

Query: 2506 SFHTWTNNT----VLCKLDRAMANEAWFSSNHAGMANFLPSGCLSDHSPCIVALFQHSRP 2339
               TW N      ++ KLDR + N+ W  +     + F   GC SDH  C ++L   +  
Sbjct: 185  PLFTWCNKREHGLIMKKLDRVLINDCWNQTFSQSYSVFEAGGC-SDHLRCRISLNSEAGN 243

Query: 2338 TK---KNFKFFNMWCDHADFEQLISEHWEEP----IHGTKQFTLCKKLKRLKGPLKALNK 2180
                 K FKF N   D  DF+ ++S +W++     +  +  F   K LK LK  ++++ +
Sbjct: 244  KVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLKPKIRSMAR 303

Query: 2179 KHFSHISSRAEKARNDFDQALEEFHLQPANTALQLQIADLKLKARSLSEAERSFYFQQAK 2000
                ++S +A +A              P++ A++ + A      R ++  E  +  Q++K
Sbjct: 304  DRLGNLSKKANEAYKILCAKQHVNLTNPSSMAMEEENAAYSRWDR-VAILEEKYLKQKSK 362

Query: 1999 CKHLTYSDRGTKFFHSLVKRNTKRNHIAAITKMDGTVTTSSCEVVKEFLDFYDNLLGT-E 1823
                   D+ TK FH         N I  I   DG V T   E+  E   F+   L    
Sbjct: 363  LHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREFLQLIP 422

Query: 1822 GDCQPINL-EICQDGPL-ITQNQSRDLLRPISIDEIKSALFSIGDDKSPGPDGYTAQFYK 1649
             D + + + E+ Q  P+  +    + L+RP++ +EI+  LF +  DKSPGPDGYT++F+K
Sbjct: 423  NDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFK 482

Query: 1648 KAWNIVGVQFSQAIMEFFTSGSLLRMINHTVIALVPKSDHASTVGDFRPIACCNVTYKVI 1469
              W I+G +F+ A+  FFT G L + IN T++AL+PK   A  + D+RPI+CCNV YKVI
Sbjct: 483  ATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVI 542

Query: 1468 AKILADRLSVTLGTLIDKAQSAFVPGRSMLDNIHMVQELLKHYNRKRISPRCILKIDLKK 1289
            +KI+A+RL + L   I   QSAFV  R +++N+ +  EL+K Y++  IS RC +KID+ K
Sbjct: 543  SKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISK 602

Query: 1288 AYDTICWDFLKDMLDGLNFPPKFVHWIMECVSTPSYSLRINGEMHGFFKGQRGLRQGDPL 1109
            A+D++ W FL ++   L FP +F+HWI  C++T S+S+++NGE+ G+F+  RGLRQG  L
Sbjct: 603  AFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCAL 662

Query: 1108 SPFLFVICVEYFSRSLNRAAKNAHFSYHPKCGGLKISHXXXXXXXXXXXXXXASSVGILL 929
            SP+LFVIC++  S+ L++AA   HF YHPKC  + ++H                S+  ++
Sbjct: 663  SPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERII 722

Query: 928  STLTDFGNKSGLRANALKSSIFTAGIQGREKQVVLEAANIPIGHMPFRYLGIPIVAEKLK 749
                +F   SGLR +  KS+++ AG+    +  V +      G +P RYLG+P++ ++L 
Sbjct: 723  KVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLS 782

Query: 748  VCQYGLLIDKIHSYLKTWTAKNLSHAGKLELIQAVLQGTECLWFSVLPVPCAVMDKIISI 569
                  L++++   + +WT++ LS+AG+L LI +VL      W +   +P   + ++  +
Sbjct: 783  TTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKM 842

Query: 568  CRSFLW-----GVNKHQLLGKIYACPNPREDLALES*KHGTTPSWLK 443
            C +FLW       NK ++   +   P     L L S K       LK
Sbjct: 843  CSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLK 889



 Score = 72.0 bits (175), Expect = 2e-09
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
 Frame = -2

Query: 539  APVAWKDLCLPKSEGGLGLRELKTWNNSLLAKVLWNINAKKDSLWIRWIDQVYLHGVSIW 360
            A ++W  +C PK EGGLGLR LK  N+    K++W I +  +SLW++W+DQ  L   S W
Sbjct: 858  AKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFW 917

Query: 359  DV-QNKKDHSPLMKRILQIR 303
            +V Q     S + K++L+ R
Sbjct: 918  EVKQTVSQGSWIWKKLLKYR 937


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  365 bits (938), Expect(2) = e-123
 Identities = 253/827 (30%), Positives = 400/827 (48%), Gaps = 23/827 (2%)
 Frame = -3

Query: 2944 VLETKINDVKCSRIMRNKFGGWNHFHNFHLHNAGRILIIWDPSTTILEPIILDAQFILAR 2765
            VLET++ + K   I    F  W    N+  +  GRI ++W  S   L+ I   +Q I+  
Sbjct: 336  VLETRVIESKVPVIFAKVFKDWQMVSNYEFNRLGRIWVVWSSSVQ-LQVIFKSSQMIVCL 394

Query: 2764 AICKVTALSFHICFIYGFHTVVSRRPLW----DTXXXXXXXXXXXXXLGDFNCVMKASER 2597
               +   + F   FIY  + V  R+ LW    +               GDFN  +K  E 
Sbjct: 395  VRVEHYDVEFICSFIYASNFVEERKKLWQDLHNLQNSVAFRNKPWLLFGDFNETLKMEEH 454

Query: 2596 LNGTEVSSYET---RDLLQCCLSAGLSDLNSIGSFHTWTNNT---VLCK-LDRAMANEAW 2438
             +   VS   T   RD         L D+ + G   TW N     ++CK LDR + N   
Sbjct: 455  -SSYAVSPMVTPGMRDFQIVVRYCSLEDMRTHGPLFTWGNKRNEGLICKKLDRVLLNPE- 512

Query: 2437 FSSNHAGMANFLPSGCLSDHSPCIVALFQHSRPTKKNFKFFNMWCDHADFEQLISEHWEE 2258
            ++S +      + SG  SDH      L    +  K  FKF N+   H +F   + + W+ 
Sbjct: 513  YNSAYPHSYCIMDSGGCSDHLRGRFHLRSAIQKPKGPFKFTNVIAAHPEFMPKVEDFWKN 572

Query: 2257 PIH----GTKQFTLCKKLKRLKGPLKALNKKHFSHISSRAEKARNDFDQALEEFHLQPAN 2090
                    +  F   KKLK LK  LK L++ + S ++ RA         A EE       
Sbjct: 573  TTELFPSTSTLFRFSKKLKELKPILKDLSRNNLSDLTRRAT-------YAYEELCRCQTK 625

Query: 2089 TALQLQIADLKLKARSLSEAERSFYFQQ-AKCKHLTYSDRGTKFFHSLVKRNTKRNHIAA 1913
            +   L   D+          + S  F++  K +HL                    N I  
Sbjct: 626  SLTTLNPHDI---------VDESLAFERWEKERHLL-------------------NAIHE 657

Query: 1912 ITKMDGTVTTSSCEVVKEFLDFYDNLLGTE-GDCQPINLEICQDGPL---ITQNQSRDLL 1745
            +    GT   +  ++  E + F+ +LL ++  D   I+++  + G L    + ++   L+
Sbjct: 658  VMDPQGTRPPNQDDIKIEAVRFFSDLLSSQPSDFTGISVDELK-GILQYRYSLHEQNLLV 716

Query: 1744 RPISIDEIKSALFSIGDDKSPGPDGYTAQFYKKAWNIVGVQFSQAIMEFFTSGSLLRMIN 1565
              I+  E+    FSI  +KSPGPDGYT +F+++ W+++G + + AI  FFT G L + +N
Sbjct: 717  AEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLN 776

Query: 1564 HTVIALVPKSDHASTVGDFRPIACCNVTYKVIAKILADRLSVTLGTLIDKAQSAFVPGRS 1385
             T++AL+PK  +A  + D+RPI+CCNV YK I+K+LA+RL   L   I   QSAF+  R 
Sbjct: 777  STILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRL 836

Query: 1384 MLDNIHMVQELLKHYNRKRISPRCILKIDLKKAYDTICWDFLKDMLDGLNFPPKFVHWIM 1205
            +++N+ +  EL+K Y++  +SPRC +KIDL KA+D++ W FL + L  L+ P KF+HWI 
Sbjct: 837  LMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWIN 896

Query: 1204 ECVSTPSYSLRINGEMHGFFKGQRGLRQGDPLSPFLFVICVEYFSRSLNRAAKNAHFSYH 1025
             C+ST S+S+++N           GLRQG  LSP+LFVIC+   S  L++ A    F YH
Sbjct: 897  LCISTASFSVQVN-----------GLRQGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYH 945

Query: 1024 PKCGGLKISHXXXXXXXXXXXXXXASSVGILLSTLTDFGNKSGLRANALKSSIFTAGIQG 845
            P+C  + ++H              A S+  +L+   DF   SGL  +  KS++F A I  
Sbjct: 946  PRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISS 1005

Query: 844  REKQVVLEAANIPIGHMPFRYLGIPIVAEKLKVCQYGLLIDKIHSYLKTWTAKNLSHAGK 665
                 +L       G +P RYLG+P++ +++ +     L++KI S + +W  + LS+AG+
Sbjct: 1006 ETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGR 1065

Query: 664  LELIQAVLQGTECLWFSVLPVPCAVMDKIISICRSFLWG---VNKHQ 533
            L+L+ +V+      W S   +P A + +I  I  +FLW    +N H+
Sbjct: 1066 LQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHK 1112



 Score =  106 bits (264), Expect(2) = e-123
 Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 7/186 (3%)
 Frame = -2

Query: 539  APVAWKDLCLPKSEGGLGLRELKTWNNSLLAKVLWNINAKKDSLWIRWIDQVYLHGVS-I 363
            A VAW D+C PKSEGGLGLR L   N     K++W + + K SLW+ WI    +  V+  
Sbjct: 1113 AKVAWHDVCKPKSEGGLGLRSLVDANKICCFKLIWRLVSAKHSLWVNWIQNNLIRTVAEA 1172

Query: 362  WDVQNKKDHSPLMKRILQIRNQLLQMEGSCT---AAITRIESWMRLGNFSSSLAYEWLRP 192
                 ++ H   +   ++   + L   G CT    ++ R         F S   +  +R 
Sbjct: 1173 LSSHRRRSHRDDILNDIEEELEKLLCRGICTEQDRSLCRSIGGQFKAKFFSPEIWHQIRE 1232

Query: 191  KGTKTIWIKQIWKEYIPPKYSFNLWLAAKSRLQTRDRLSFQD---NTECCLCNNATESHR 21
            +G    W K IW     PK++F  WLAA  RL T D+++  +   ++ C LCN + ES  
Sbjct: 1233 QGLVKQWHKAIWFSGATPKFTFISWLAAHDRLTTGDKMASWNRGISSVCVLCNISAESRD 1292

Query: 20   HLFFQC 3
            HLFF C
Sbjct: 1293 HLFFSC 1298


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score =  429 bits (1102), Expect = e-117
 Identities = 269/804 (33%), Positives = 425/804 (52%), Gaps = 16/804 (1%)
 Frame = -3

Query: 3016 GLNLPLKQNGVRHLIKEHRIDVLAVLETKINDVKCSRIMRNKFGGWNHFHNFHLHNAGRI 2837
            GLN   +Q  VR  I  + + V   LET +     + ++ +   GW    N+     GRI
Sbjct: 53   GLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSNYCCSELGRI 112

Query: 2836 LIIWDPSTTILEPIILDAQFILARAICKVTAL--SFHICFIYGFHTVVSRRPLWDTXXXX 2663
             I+WDPS ++L  +      I+  +I K+ +L  SF + F+YG ++ + RR LW+     
Sbjct: 113  WIVWDPSISVL--VFKRTDQIMFCSI-KIPSLLQSFAVAFVYGRNSELDRRSLWEDILVL 169

Query: 2662 XXXXXXXXXL----GDFNCVMKASERLN-GTEVSSYETRDLLQCCL-SAGLSDLNSIGSF 2501
                          GDFN +  ASE  +    + +    + LQCCL  + LSDL S G F
Sbjct: 170  SRTSPLSVTPWLLLGDFNQIAAASEHYSINQSLLNLRGMEDLQCCLRDSQLSDLPSRGVF 229

Query: 2500 HTWTN----NTVLCKLDRAMANEAWFSSNHAGMANFLPSGCLSDHSPCIVALFQHSRPTK 2333
             TW+N    N +L KLDRA+AN  WF+   + +A F P G  SDH+PCI+ +     P+K
Sbjct: 230  FTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPPGD-SDHAPCIILIDNQPPPSK 288

Query: 2332 KNFKFFNMWCDHADFEQLISEHWEE-PIHGTKQFTLCKKLKRLKGPLKALNKKHFSHISS 2156
            K+FK+F+    H  +   +S  WEE  + G+  F+L + LK  K   + LN+  FS+I  
Sbjct: 289  KSFKYFSFLSSHPSYLAALSTAWEENTLVGSHMFSLRQHLKVAKLCCRTLNRLRFSNIQQ 348

Query: 2155 RAEKARNDFDQALEEFHLQPANTALQLQIADLKLKARSLSEAERSFYFQQAKCKHLTYSD 1976
            R  ++    +    E    P++T  + +    K +    + A  SF+ Q+++ + L   D
Sbjct: 349  RTAQSLTRLEDIQVELLTSPSDTLFRREHVARK-QWIFFAAALESFFRQKSRIRWLHEGD 407

Query: 1975 RGTKFFHSLVKRNTKRNHIAAITKMDGTVTTSSCEVVKEFLDFYDNLLGTEGD-CQPINL 1799
              T+FFH  V  +   N I  +   DG    +  ++    + +Y +LLG   +   P ++
Sbjct: 408  ANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGMLIAYYSHLLGIPSENVTPFSV 467

Query: 1798 EICQDG-PLITQNQSRDLLRPI-SIDEIKSALFSIGDDKSPGPDGYTAQFYKKAWNIVGV 1625
            E  +   P    +     L  I S +EI   LFS+  +K+PGPDG+  +F+ +AW IV  
Sbjct: 468  EKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKS 527

Query: 1624 QFSQAIMEFFTSGSLLRMINHTVIALVPKSDHASTVGDFRPIACCNVTYKVIAKILADRL 1445
                AI EFF SG+L R  N T I L+PK   A  +  FRP+ACC   YKVI +I++ RL
Sbjct: 528  SVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRL 587

Query: 1444 SVTLGTLIDKAQSAFVPGRSMLDNIHMVQELLKHYNRKRISPRCILKIDLKKAYDTICWD 1265
             + +   +   Q  F+ GR + +N+ +  EL+ ++     + R  L++D+ KAYD + W+
Sbjct: 588  KLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWE 647

Query: 1264 FLKDMLDGLNFPPKFVHWIMECVSTPSYSLRINGEMHGFFKGQRGLRQGDPLSPFLFVIC 1085
            FL ++L  L+ P  F+HWI  C+S+ SYS+  NGE+ GFF+G++G+RQGDP+S  LFV+ 
Sbjct: 648  FLINILKALDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLV 707

Query: 1084 VEYFSRSLNRAAKNAHFSYHPKCGGLKISHXXXXXXXXXXXXXXASSVGILLSTLTDFGN 905
            ++  S+SL+  A N  F+ HP C    I+H              ASS+  +L+ L DF  
Sbjct: 708  MDVLSKSLDLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTILDDFRQ 767

Query: 904  KSGLRANALKSSIFTAGIQGREKQVVLEAANIPIGHMPFRYLGIPIVAEKLKVCQYGLLI 725
             SGL  N  K+ +   G      + + +   I  G +P RYLG+P++++K++   Y  L+
Sbjct: 768  GSGLGINREKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLV 827

Query: 724  DKIHSYLKTWTAKNLSHAGKLELI 653
            D+I+S   +WTA++LS AG+L+L+
Sbjct: 828  DRINSRFTSWTARHLSFAGRLQLL 851



 Score = 71.2 bits (173), Expect = 4e-09
 Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
 Frame = -2

Query: 362  WDVQNKKDHSP---LMKRILQIRNQLLQMEGSCTAAITRIESWMRLGNFSSSLAYEWLRP 192
            W + + +  +P   L++R+L     L+      T  + +I        FS++  + +L+P
Sbjct: 921  WRISSSRSRNPVITLLQRVLPSAASLIDCPHDDTY-LWKIGHHAPSNRFSTADTWSYLQP 979

Query: 191  KGTKTIWIKQIWKEYIPPKYSFNLWLAAKSRLQTRDRL---SFQDNTECCLCNNATESHR 21
              T  +W K +W +   PK +F  W+ A +RL TRDRL    F     C LCN+  ES  
Sbjct: 980  SSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRWGFSIPPTCVLCNDLDESRE 1039

Query: 20   HLFFQC 3
            HLFF+C
Sbjct: 1040 HLFFRC 1045


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  388 bits (996), Expect(2) = e-115
 Identities = 239/778 (30%), Positives = 381/778 (48%), Gaps = 13/778 (1%)
 Frame = -3

Query: 2845 GRILIIWDPSTTILEPIILDAQFILARAICKVTALSFHICFIYGFHTVVSRRPLWDTXXX 2666
            GRI ++W  +   L P+   +Q I    + +     F   FIY  + V  RR LW+    
Sbjct: 428  GRIWVVWRDNAR-LTPVFKSSQMITCSILLEGKEEEFFCSFIYASNFVEERRILWEDIRS 486

Query: 2665 XXXXXXXXXXL----GDFNCVMKASERLNGTEVSSYETRDLLQCCLSAGLSDLNSIGSFH 2498
                           GDFN      E L G E S+Y+           G+ D   IG   
Sbjct: 487  HHDSPLIRNKPWILCGDFN------EILEGGEHSNYDNSPYTP----PGMRDFQEIG--- 533

Query: 2497 TWTNNTVLCKLDRAMANEAWFSSNHAGMANFLPSGCLSDHSPCIVALFQHSRPTKKNFKF 2318
                        R M   A                               +   +K FKF
Sbjct: 534  ------------RLMLEAA-------------------------------ATGGRKPFKF 550

Query: 2317 FNMWCDHADFEQLISEHWEEP----IHGTKQFTLCKKLKRLKGPLKALNKKHFSHISSRA 2150
             N+      F  ++  HW       +  +  +   KKLK LK  L+ L K+    +  R 
Sbjct: 551  VNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKLGDLPKRT 610

Query: 2149 EKARNDFDQALEEFHLQPANTALQLQIADLKLKA--RSLSEAERSFYFQQAKCKHLTYSD 1976
             +A        E+     AN + +    +LK       LSE E  F  Q++K   +   D
Sbjct: 611  REAHI---LLCEKQATTLANPSQETIAEELKAYTDWTHLSELEEGFLKQKSKLHWMNVGD 667

Query: 1975 RGTKFFHSLVKRNTKRNHIAAITKMDGTVTTSSCEVVKEFLDFYDNLLGTE-GDCQPINL 1799
                +FH   +    RN I  I   +     +S E+  E   F++  L  + GD   I++
Sbjct: 668  GNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLNRQSGDFHGISV 727

Query: 1798 EICQD--GPLITQNQSRDLLRPISIDEIKSALFSIGDDKSPGPDGYTAQFYKKAWNIVGV 1625
            E  ++      +      L R ++ +EI+  LF++ ++KSPGPDGYT++F+K  W++ G 
Sbjct: 728  EDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGP 787

Query: 1624 QFSQAIMEFFTSGSLLRMINHTVIALVPKSDHASTVGDFRPIACCNVTYKVIAKILADRL 1445
             F  AI  FF  G L + +N T++AL+PK D A  + D+RPI+CCNV YKVI+KILA+RL
Sbjct: 788  DFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRL 847

Query: 1444 SVTLGTLIDKAQSAFVPGRSMLDNIHMVQELLKHYNRKRISPRCILKIDLKKAYDTICWD 1265
             + L + I + QSAFV  R +++N+ +  EL+K Y+++ ++PRC +KID+ KA+D++ W 
Sbjct: 848  KLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQ 907

Query: 1264 FLKDMLDGLNFPPKFVHWIMECVSTPSYSLRINGEMHGFFKGQRGLRQGDPLSPFLFVIC 1085
            FL + L+ LNFP  F HWI  C+ST ++S+++NGE+ GFF   RGLRQG  LSP+LFVIC
Sbjct: 908  FLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVIC 967

Query: 1084 VEYFSRSLNRAAKNAHFSYHPKCGGLKISHXXXXXXXXXXXXXXASSVGILLSTLTDFGN 905
            +   S  ++ AA + +  YHPKC  + ++H                S+  +++   +F  
Sbjct: 968  MNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAG 1027

Query: 904  KSGLRANALKSSIFTAGIQGREKQVVLEAANIPIGHMPFRYLGIPIVAEKLKVCQYGLLI 725
            +SGL+ +  KS+I+ AG+   ++   L +     G +P RYLG+P++ +++    Y  LI
Sbjct: 1028 RSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLI 1087

Query: 724  DKIHSYLKTWTAKNLSHAGKLELIQAVLQGTECLWFSVLPVPCAVMDKIISICRSFLW 551
            + + + + +WTA++LS+AG+L L+ +V+      W S   +P   + +I  +C +FLW
Sbjct: 1088 EAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLW 1145



 Score = 56.6 bits (135), Expect(2) = e-115
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = -2

Query: 539  APVAWKDLCLPKSEGGLGLRELKTWNNSLLAKVLWNINAKKDSLWIRWIDQVYLHGVSIW 360
            A +AW  +C PK EGGLG++ L   N     K++W + + + SLW+ WI    +   + W
Sbjct: 1155 AKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFW 1214

Query: 359  DVQNKKD-HSPLMKRILQIR 303
                +    S + K++L+ R
Sbjct: 1215 SANERSSLGSWMWKKLLKYR 1234



 Score = 67.4 bits (163), Expect = 6e-08
 Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 8/125 (6%)
 Frame = -2

Query: 353  QNKKDHSPLMKRILQIRNQLLQMEGSCTAAITRIESWMRLGN-----FSSSLAYEWLRPK 189
            Q+++  + +  RI     +L Q E     A   I  W  L N     F + + +  +R  
Sbjct: 1292 QHRQHRAAIYNRINAEIQRLQQQERE---AGPDISLWRSLKNDFNKRFITKVTWNNVRTH 1348

Query: 188  GTKTIWIKQIWKEYIPPKYSFNLWLAAKSRLQTRDRLSFQDNTE---CCLCNNATESHRH 18
              +  W K +W  Y  PKYSF LWL  ++RL T DR+   ++ +   C LCNNA E+  H
Sbjct: 1349 QPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDH 1408

Query: 17   LFFQC 3
            LFF C
Sbjct: 1409 LFFSC 1413



 Score = 63.5 bits (153), Expect = 8e-07
 Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 8/226 (3%)
 Frame = -1

Query: 4002 VKYKYYTHRSGWLVFKFENEEDKAKVLQGGPYFVFGRPLMIKSLPYCFQFDETDFHDVPV 3823
            VK   Y   +  + F+      +A+VL+ G + +   P+++       +  + +   +P+
Sbjct: 98   VKIDAYVVDTKTIKFRIRESSVRARVLRRGMWNIADMPMIVSKWSPVAEDAQPEIKTMPM 157

Query: 3822 WVTLPGLPLECWHPMALSKICSKVGKPISSDGLTASRDRLSYARVLVEVDASKPLVKSVP 3643
            W+T+  +P   +    LS + S +G+P      T   +    A+V VE D ++ + K   
Sbjct: 158  WITIKNVPRSMFTWKGLSFLASPIGEPKKLHPDTVLCNSFEEAKVFVEADLTQEMPKQFR 217

Query: 3642 IKLPNGQTRVQEIRFEHEPRFCTSCKMLGHDLENC---NGSHHMSTPSAALEKGNNQAST 3472
             K   G   + E ++   P  C+SC   GH  E C      + +STP+    +   +   
Sbjct: 218  FKSETGVDAMVEYKYPWLPPRCSSCSKWGHIQEVCLTRPSPNQLSTPTEIETEDKTEPPL 277

Query: 3471 RRGR-----SKEPSKHNQRDGKGLENATTSSMLPPTQKGSSATEVA 3349
             + +     SK PS    +   G  +     M  PT   +   EVA
Sbjct: 278  MKEKPLEILSKSPSATLTKTLNGDSHTQKVPMKNPTVLQNKGKEVA 323


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  419 bits (1077), Expect = e-114
 Identities = 244/716 (34%), Positives = 384/716 (53%), Gaps = 22/716 (3%)
 Frame = -3

Query: 2632 GDFNCVMKASERLNGTE--VSSYETRDLLQCCLSAGLSDLNSIGSFHTWTN----NTVLC 2471
            GDFN ++   E  N  E  V++   RD         ++DL   G   TW+N    + +  
Sbjct: 29   GDFNEILDMEEHSNSRENPVTTTGMRDFQMAVNHCSITDLAYHGPLFTWSNKRENDLIAK 88

Query: 2470 KLDRAMANEAWFSSNHAGMANFLPSGCLSDHSPCIVALFQHSRPT---KKNFKFFNMWCD 2300
            KLDR + N+ W  S     + F   GC SDH  C + L   +      K+ FKF N+  +
Sbjct: 89   KLDRVLVNDVWLQSFPRSYSVFEAGGC-SDHLRCRINLNVGAGAVVKGKRPFKFVNVITE 147

Query: 2299 HADFEQLISEHWEEP----IHGTKQFTLCKKLKRLKGPLKALNKKHFSHISSRAEKARND 2132
               F   +  +W E     +  +  F   KKLK LK  L+ L K+   ++  + ++A   
Sbjct: 148  MEHFIPTVESYWNETEAIFMSTSSLFRFSKKLKGLKPLLRNLGKERLGNLVKQTKEAFET 207

Query: 2131 FDQALEEFHLQPANTALQLQIADLKLKARSLSEAERSFYFQQAKCKHLTYSDRGTKFFHS 1952
              Q        P+ +++Q +  +   K   ++  E  F  Q++K   L   DR  K FH 
Sbjct: 208  LCQKQAMKMANPSPSSMQEE-NEAYAKWDHIAVLEEKFLKQRSKLHWLDIGDRNNKAFHR 266

Query: 1951 LVKRNTKRNHIAAITKMDGTVTTSSCEV-------VKEFLDFYDNLLGTEGDCQPINLEI 1793
             V     +N I  I   DG+V +   ++        +EFL    N      D + I +E 
Sbjct: 267  AVVAREAQNSIREIICHDGSVASQEEKIKTEAEHHFREFLQLIPN------DFEGIAVEE 320

Query: 1792 CQDG-PLITQNQSRDLL-RPISIDEIKSALFSIGDDKSPGPDGYTAQFYKKAWNIVGVQF 1619
             QD  P    +  +++L   +S +EI   +FS+ +DKSPGPDGYTA+FYK AWNI+G +F
Sbjct: 321  LQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEF 380

Query: 1618 SQAIMEFFTSGSLLRMINHTVIALVPKSDHASTVGDFRPIACCNVTYKVIAKILADRLSV 1439
              AI  FF  G L + IN T++AL+PK   A  + D+RPI+CCNV YKVI+KI+A+RL +
Sbjct: 381  ILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKL 440

Query: 1438 TLGTLIDKAQSAFVPGRSMLDNIHMVQELLKHYNRKRISPRCILKIDLKKAYDTICWDFL 1259
             L   I   QSAFV  R +++N+ +  E++K Y++  +S RC LKID+ KA+D++ W FL
Sbjct: 441  VLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFL 500

Query: 1258 KDMLDGLNFPPKFVHWIMECVSTPSYSLRINGEMHGFFKGQRGLRQGDPLSPFLFVICVE 1079
             ++L+ +NFPP+F HWI  C++T S+S+++NGE+ G F   R LRQG  LSP+LFVI ++
Sbjct: 501  INVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMD 560

Query: 1078 YFSRSLNRAAKNAHFSYHPKCGGLKISHXXXXXXXXXXXXXXASSVGILLSTLTDFGNKS 899
              S+ L++A     F YHPKC  + ++H                S+  ++  L +F   S
Sbjct: 561  VLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWS 620

Query: 898  GLRANALKSSIFTAGIQGREKQVVLEAANIPIGHMPFRYLGIPIVAEKLKVCQYGLLIDK 719
            GL+ +  KS+++ AG+Q    Q +++  +  +G +P RYLG+P+V+++L       LI++
Sbjct: 621  GLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQ 680

Query: 718  IHSYLKTWTAKNLSHAGKLELIQAVLQGTECLWFSVLPVPCAVMDKIISICRSFLW 551
            +   ++ WT++ LS AG+L LI + L      W +   +P A + +I  +C +FLW
Sbjct: 681  LRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRLPRACIREIDKLCSAFLW 736


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  365 bits (937), Expect(2) = e-113
 Identities = 224/699 (32%), Positives = 332/699 (47%), Gaps = 2/699 (0%)
 Frame = -3

Query: 2632 GDFNCVMKASERLNGTEVSSYETRDLLQCCLSAGLSDLNSIGSFHTWTNNTVLCKLDRAM 2453
            GDFN   +  E + G    +    +   C  ++ L DLN                     
Sbjct: 97   GDFNVTRRCEETIGGNSRFTNAMDEFNSCLHNSKLDDLNY-------------------- 136

Query: 2452 ANEAWFSSNHAGMANFLPSGCLSDHSPCIVALFQHSRPTKKNFKFFNMWCDHADFEQLIS 2273
                        + +FLP G +SDH+  +V +    R  K  FKFFN   D  DF  ++S
Sbjct: 137  -----------SVLSFLPPG-ISDHAAMVVKVGLPFRIRKAPFKFFNFLADREDFIPIVS 184

Query: 2272 EHWEEPIHGTKQFTLCKKLKRLKGPLKALNKKHFSHISSRAEKARNDFDQALEEFHLQPA 2093
              W   + G+KQF + +KLK +K   K LN                              
Sbjct: 185  AVWATNVWGSKQFQVWRKLKLVKNQFKLLN------------------------------ 214

Query: 2092 NTALQLQIADLKLKARSLSEAERSFYFQQAKCKHLTYSDRGTKFFHSLVKRNTKRNHIAA 1913
                   + +  LK +S             + + L   D+ + FF   + ++  RN IA 
Sbjct: 215  -----CNVVEKLLKKKS-------------RVQWLKKGDKNSTFFFKTMTKHRNRNRIAT 256

Query: 1912 ITKMDGTVTTSSCEVVKEFLDFYDNLLGTEGDCQPINLEICQDGPLITQNQSRDLLRPIS 1733
            I + DG                                           + ++ L    +
Sbjct: 257  INRSDGP------------------------------------------DLAKSLCNEFT 274

Query: 1732 IDEIKSALFSIGDDKSPGPDGYTAQFYKKAWNIVGVQF-SQAIMEFFTSGSLLRMINHTV 1556
             D+I++  FS+  +KSPGPDG+   F++KAW ++G    + A+ EFF+ GSLL  +N T+
Sbjct: 275  HDDIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNSTI 334

Query: 1555 IALVPKSDHASTVGDFRPIACCNVTYKVIAKILADRLSVTLGTLIDKAQSAFVPGRSMLD 1376
            I LVPK  + +T+ DFRPI+CCN  YK+IAK+LA+RL  TL  ++  +QS F+PGR + D
Sbjct: 335  ITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGD 394

Query: 1375 NIHMVQELLKHYNRKRISPRCILKIDLKKAYDTICWDFLKDMLDGLNFPPKFVHWIMECV 1196
            NI + QE++  Y++    PRC   +D+ KA DT+ WDF+   L   N P   + WI  C+
Sbjct: 395  NILLAQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCI 454

Query: 1195 STPSYSLRINGEMHGFFKGQRGLRQGDPLSPFLFVICVEYFSRSLNRAAK-NAHFSYHPK 1019
            S+  +S+ +NGE+ GFF  +RGLRQGDPLSP+LFVI +E  S  + R    +  F YH +
Sbjct: 455  SSAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWR 514

Query: 1018 CGGLKISHXXXXXXXXXXXXXXASSVGILLSTLTDFGNKSGLRANALKSSIFTAGIQGRE 839
            C  L +SH               +SV  L    ++F + S L+AN  +S IF AG+ G  
Sbjct: 515  CDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNS 574

Query: 838  KQVVLEAANIPIGHMPFRYLGIPIVAEKLKVCQYGLLIDKIHSYLKTWTAKNLSHAGKLE 659
               VL+  N  +G  P RYLGIP++  KL++     L+D+I + +K+W  K LS AG+L+
Sbjct: 575  SDSVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQ 634

Query: 658  LIQAVLQGTECLWFSVLPVPCAVMDKIISICRSFLWGVN 542
            LIQ+VL   +  W S L +P  V+  I    R FLW  N
Sbjct: 635  LIQSVLSSIQVYWASHLILPKKVLKDIEKRLRCFLWAGN 673



 Score = 75.5 bits (184), Expect(2) = e-113
 Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 18/201 (8%)
 Frame = -2

Query: 551  GR**APVAWKDLCLPKSEGGLGLRELKTWNNSLLAKVLWNINAKKDSLWIRWIDQVYLHG 372
            GR    VAW ++CLPK EGGLG+++L  WN +L+   +WN+ +   + W  W+    L G
Sbjct: 676  GRAATKVAWSEICLPKCEGGLGIKDLHCWNKALMISHIWNLVSSSSNFWTDWVKVYLLKG 735

Query: 371  VSIWDVQNKKDHSPLMKRILQIR----NQLLQMEGSCTAAITRIESWMRLG----NFSSS 216
             S W+       S   +++L+IR    +  + + G   A     ++W  LG     +SS+
Sbjct: 736  NSFWNAPLPSICSWNWRKLLKIRELCCSFFVNIIGDGRATSLWFDNWHPLGPLTLRWSSN 795

Query: 215  LAYE-------WLRPKG---TKTIWIKQIWKEYIPPKYSFNLWLAAKSRLQTRDRLSFQD 66
            +  E        L P G   T + W       +I P Y   +W  A              
Sbjct: 796  IIGESGLSKSAMLTPNGFYSTSSAWNTLRPSRFIVPWYRL-VWFVA-------------- 840

Query: 65   NTECCLCNNATESHRHLFFQC 3
                       E+H HLFF C
Sbjct: 841  -----------ETHNHLFFDC 850


>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
            putative protein [Arabidopsis thaliana]
          Length = 1141

 Score =  416 bits (1069), Expect = e-113
 Identities = 283/903 (31%), Positives = 439/903 (48%), Gaps = 29/903 (3%)
 Frame = -3

Query: 3016 GLNLPLKQNGVRHLIKEHRIDVLAVLETKINDVKCSRIMRNKFGGWNHFHNFHLHNAGRI 2837
            G N+P  +NG +   K +R     V+E  +   K  + +     GW    N+   + G+I
Sbjct: 4    GFNIPSHRNGFKKWFKVNRPIFGGVIEKHVKQPKDKKFINALLPGWFFDENYGFSDLGKI 63

Query: 2836 LIIWDPSTTILEPIILDAQFILARAICKVTALSFHICFIYGFHTVVSRRPLWDTXXXXXX 2657
             ++WDPS  ++  +    Q I    +   +     I  +Y  +    R+ LW        
Sbjct: 64   WVLWDPSVEVVI-VAKSLQMITCEVLFPNSRTWIVISVVYAANEDDKRKELWREITALVA 122

Query: 2656 XXXXXXXL----GDFNCVMKASERLNGTEVS-SYETRDLLQCCLSAGLSDLNSIGSFHTW 2492
                        GDFN V+   E      ++     RD  +C L A LSDL   GS  TW
Sbjct: 123  SPVTFNRPWILLGDFNQVLHPHEHSRHVSLNVDRRIRDFRECLLDAELSDLVYKGSSFTW 182

Query: 2491 TNNT----VLCKLDRAMANEAWFSSNHAGMANFLPSGCLSDHSPCIVALFQHSRPTKKNF 2324
             N +    V  K+DR + NE+W +   +    F P    SDH+ C V L       K+ F
Sbjct: 183  WNKSKTRPVAKKIDRILVNESWSNLFPSSFGLFGPPD-FSDHASCGVVLELDPIKAKRPF 241

Query: 2323 KFFNMWCDHADFEQLISEHWEEP-IHGTKQFTLCKKLKRLKGPLKALNKKHFSHISSRAE 2147
            KFFN    + +F  L+ + W    + G+  F + KKLK LK P+K  ++ ++S++  R E
Sbjct: 242  KFFNFLLKNPEFLNLVWDVWYSTNVVGSSMFRVSKKLKALKKPIKDFSRLNYSNLEKRTE 301

Query: 2146 KARNDFDQALEEFHLQPANTALQLQIADLKL--KARSLSEAERSFYFQQAKCKHLTYSDR 1973
            +A    +  L   +L   N +L+    +L+   K + L+ AE SF+ Q+++       D 
Sbjct: 302  EAH---ETLLSFQNLTLDNPSLENAAHELEAQRKWQILATAEESFFRQRSRVTWFAEGDG 358

Query: 1972 GTKFFHSLVKRNTKRNHIAAITKMDGTVTTSSCEVVKEFLDFYDNLLGTEGDCQPINLEI 1793
             T++FH +       N I  +    GT   S   +      +++NLL  + D  P +LE 
Sbjct: 359  NTRYFHRMADSRKSVNTITTLVDDSGTQIDSQQGIADHCALYFENLLSDDND--PYSLEQ 416

Query: 1792 CQDGPLITQ----NQSRDLLRPISIDEIKSALFSIGDDKSPGPDGYTAQFYKKAWNIVGV 1625
                 L+T     +Q  DL    S ++IK+A F +  +K+ GPDG+              
Sbjct: 417  DDMNLLLTYRCPYSQVADLEAMFSDEDIKAAFFGLPSNKACGPDGFPV------------ 464

Query: 1624 QFSQAIMEFFTSGSLLRMINHTVIALVPKSDHASTVGDFRPIACCNVTYKVIAKILADRL 1445
              + A+ EFF SG+LL+  N T I L+PK  +AS   DFRPI+C N  YKVIA++L DRL
Sbjct: 465  --TAAVREFFISGNLLKQWNATTIVLIPKFPNASCTSDFRPISCMNTLYKVIARLLTDRL 522

Query: 1444 SVTLGTLIDKAQSAFVPGRSMLDNIHMVQELLKHYNRKRISPRCILKIDLKKAYDTICWD 1265
               L  +I  +QSAF+PGR + +N+ +  E++  YN + IS R +LK+DL+KA+D++ W+
Sbjct: 523  QKLLSCVISPSQSAFLPGRLLAENVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSVRWE 582

Query: 1264 FLKDMLDGLNFPPKFVHWIMECVSTPSYSLRINGEMHGFFKGQRGLRQGDPLSPFLFVIC 1085
            F+   L  L  P KF++WI +C+STP++++ +NG   GFFK  +GLRQGDPLSP+LFV+ 
Sbjct: 583  FIIAALLALGVPTKFINWIHQCISTPTFTVSVNGCCGGFFKSAKGLRQGDPLSPYLFVLA 642

Query: 1084 VEYFSRSLNRAAKNAHFSYHPKCGGLKISHXXXXXXXXXXXXXXASSVGILLSTLTDFGN 905
            +E FS+ LN    + +  YHPK   L ISH              +SS+  +  TL DF +
Sbjct: 643  MEVFSKLLNSRFDSGYIRYHPKASDLSISHLMFADDVMIFFDGGSSSLHGICETLEDFAS 702

Query: 904  KSGLRANALKSSIFTAGIQGREKQVVLEAANIPIGHMPFRYLGIPIVAEKLKVCQYGLLI 725
             SGL+ N  KS  F AG++  E+   L A   P G +P RYLG+P++  KL++ +Y  L+
Sbjct: 703  WSGLKVNNDKSHFFCAGLEQAERN-SLAAYGFPQGCLPIRYLGLPLMCRKLRIAEYEPLL 761

Query: 724  DKIHSYLKTWTAKNLSHAGKLELIQAV---LQGTECLWFSVLPVPCAVMDKII------- 575
            +K        + KN  H  ++  +  V   L     +  S    P +   ++        
Sbjct: 762  EK--------SPKNSDHGQQIVYLTQVEFNLLLPLSMVSSTFGCPLSCCQRVALRRLKAF 813

Query: 574  ---SICRSFLWGVNKHQLLGKIYACPNPREDLALES*KHGTTPSWLKYYGTSMQRRTLFG 404
               S  R  L  V + + LG ++A    +  LALE    GT       +G S+  +  FG
Sbjct: 814  VLGSFERETLMVVEEQRSLGLLFASQKMKVGLALEDSPSGTKRFVCVLFGFSLIIKVRFG 873

Query: 403  YDG 395
            + G
Sbjct: 874  FLG 876


>gb|EOY17513.1| Uncharacterized protein TCM_036737 [Theobroma cacao]
          Length = 2215

 Score =  383 bits (983), Expect(2) = e-108
 Identities = 245/820 (29%), Positives = 395/820 (48%), Gaps = 4/820 (0%)
 Frame = -3

Query: 2995 QNGVRHLIKEHRIDVLAVLETKINDVKCSRIMRNKFGGWNHFHNFHLHNAGRILIIWDPS 2816
            Q  ++ L   HR+ +LA+LE  ++  K +   R K G    F    ++N+ +I +    S
Sbjct: 866  QRRIKKLQLMHRLKILAILEPMVDTSK-AEYFRRKMG----FEKVIVNNSQKIWLFH--S 918

Query: 2815 TTILEPIILD-AQFILARAICKVTALSFHICFIYGFHTVVSRRPLWDTXXXXXXXXXXXX 2639
               +  ++LD  Q +  R       L     F+Y   T   R PLW+             
Sbjct: 919  VEFICEVLLDHPQCLHVRVTIPWLDLPIFTTFVYAKCTRSERTPLWNCLRNLAADMEGPW 978

Query: 2638 XLG-DFNCVMKASERLNGTEVSSYETRDLLQCCLSAGLSDLNSIGSFHTWTNNTVLCKLD 2462
             +G DFN ++K  ERL G +       D     L  GL D    G+  TWTNN +  +LD
Sbjct: 979  IVGGDFNIILKREERLYGADPHEGSIEDFASVLLDCGLLDGGFEGNPFTWTNNRMFQRLD 1038

Query: 2461 RAMANEAWFSSNHAGMANFLPSGCLSDHSPCIVALFQHSRPTKKNFKFFNMWCDHADFEQ 2282
            R + N+ W +         L     SDH P +++    S     +F+F + W  H +F  
Sbjct: 1039 RMVYNQQWINKFPITRIQHLNRDG-SDHCPLLLSCSNSSEKAPSSFRFLHAWALHHNFNA 1097

Query: 2281 LISEHWEEPIHGTKQFTLCKKLKRLKGPLKALNKKHFSHISSRAEKARNDFDQALEEFHL 2102
             +  +W  PI+G+       K KRLK  LK  NK  F  I S  ++A    ++  E  H 
Sbjct: 1098 SVEGNWNLPINGSGLMAFWSKQKRLKQHLKWWNKTVFGDIFSNIKEAEKRVEEC-EILHQ 1156

Query: 2101 QPANTALQLQIADLKLKARSLSEAERSFYFQQAKCKHLTYSDRGTKFFHSLVKRNTKRNH 1922
            Q      ++Q+     +       E  F+ Q++  K +   +R TKFFH  +++   R+H
Sbjct: 1157 QEQTIGSRIQLNKSYAQLNKQLSMEEIFWKQKSGVKWVVEGERNTKFFHMRMQKKRIRSH 1216

Query: 1921 IAAITKMDGTVTTSSCEVVKEFLDFYDNLLGTEGDCQPINLEICQDGPLITQNQSRDLLR 1742
            I  I + DG       ++ +  +DF+ +LL  E  C     +      +I+   +  L  
Sbjct: 1217 IFKIQEQDGNWIEDPEQLQQSAIDFFSSLLKAES-CDDTRFQSSLCPSIISDTDNGFLCA 1275

Query: 1741 PISIDEIKSALFSIGDDKSPGPDGYTAQFYKKAWNIVGVQFSQAIMEFFTSGSLLRMINH 1562
              ++ E+K A+F I  + + GPDG+++ FY++ W+I+     +A+ EFF    + + +  
Sbjct: 1276 EPTLQEVKEAVFGIDPESAAGPDGFSSHFYQQCWDIIAHDLFEAVKEFFHGADIPQGMTS 1335

Query: 1561 TVIALVPKSDHASTVGDFRPIACCNVTYKVIAKILADRLSVTLGTLIDKAQSAFVPGRSM 1382
            T + L+PK+  AS   +FRPI+ C V  K+I KILA+RL+  L ++I + QS FV GR +
Sbjct: 1336 TTLVLIPKTTSASKWSEFRPISLCTVMNKIITKILANRLAKILPSIITENQSGFVGGRLI 1395

Query: 1381 LDNIHMVQELLKHYNRKRISPRCILKIDLKKAYDTICWDFLKDMLDGLNFPPKFVHWIME 1202
             DNI + QEL+   ++K       LK+D+ KAYD + W FL  +L  L F  +++  I +
Sbjct: 1396 SDNILLAQELIGKLDQKNRGGNVALKLDMMKAYDRLDWSFLFKVLQHLGFNAQWIGMIQK 1455

Query: 1201 CVSTPSYSLRINGEMHGFFKGQRGLRQGDPLSPFLFVICVEYFSRSLNRAAKNAHFSYHP 1022
            C+S   +SL +NG   G+FK +RGLRQGD +SP LF++  EY +R LN A  + + S H 
Sbjct: 1456 CISNCWFSLLLNGRTVGYFKSERGLRQGDSISPQLFILAAEYLARGLN-ALYDQYPSLHY 1514

Query: 1021 KCG-GLKISHXXXXXXXXXXXXXXASSVGILLSTLTDFGNKSGLRANALKSSIFT-AGIQ 848
              G  L +SH               S++  +++ L ++   SG R N  KS + T   + 
Sbjct: 1515 SSGCSLSVSHLAFADDVIIFANGSKSALQKIMAFLQEYEKLSGQRINPQKSCVVTHTNMA 1574

Query: 847  GREKQVVLEAANIPIGHMPFRYLGIPIVAEKLKVCQYGLLIDKIHSYLKTWTAKNLSHAG 668
               +Q++L+A       +P  YLG P+     KV  +  L+ KI   +  W  K LS  G
Sbjct: 1575 SSRRQIILQATGFSHRPLPITYLGAPLYKGHKKVMLFNDLVAKIEERITGWENKTLSPGG 1634

Query: 667  KLELIQAVLQGTECLWFSVLPVPCAVMDKIISICRSFLWG 548
            ++ L+++ L         VL  P  V+++I  +  +FLWG
Sbjct: 1635 RITLLRSTLSSLPIYLLQVLKPPVIVLERINRLLNNFLWG 1674



 Score = 39.3 bits (90), Expect(2) = e-108
 Identities = 23/75 (30%), Positives = 37/75 (49%)
 Frame = -2

Query: 530  AWKDLCLPKSEGGLGLRELKTWNNSLLAKVLWNINAKKDSLWIRWIDQVYLHGVSIWDVQ 351
            +W  + LP +EGGL +R ++    +   K+ W      +SLW +++   Y  G    DVQ
Sbjct: 1686 SWGKIALPIAEGGLDIRNVEDVCEAFSMKLWWRFRT-TNSLWTQFMRAKYCGGQLPTDVQ 1744

Query: 350  NKKDHSPLMKRILQI 306
             K   S   KR++ I
Sbjct: 1745 PKLHDSQTWKRMVTI 1759



 Score = 65.5 bits (158), Expect = 2e-07
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 6/163 (3%)
 Frame = -1

Query: 4008 WNVKYKYYTHRSGWLVFKFENEEDKAKVLQGGPYFVFGRPLMIKSLPYCFQFDETDFHDV 3829
            + V++  Y H    ++    NE+D  ++     +F+  + + +      F+  E +   V
Sbjct: 20   YEVRWLDYKH----VLIHLSNEQDFNRIWTKQNWFIATQKMRVFKWTPEFE-PEKESAVV 74

Query: 3828 PVWVTLPGLPLECWHPMALSKICSKVGKPISSDGLTASRDRLSYARVLVEVDASKPLVKS 3649
            PVW++ P L    +   AL  I   VGKP+  D  TA+  R S ARV VE D  K  V  
Sbjct: 75   PVWISFPNLKAHLFEKSALLLIAKTVGKPLFVDEATANGSRPSVARVCVEYDCRKSPVDQ 134

Query: 3648 VPIKLPNGQT------RVQEIRFEHEPRFCTSCKMLGHDLENC 3538
            V I + N +T        Q + F   P +C  C  +GH   +C
Sbjct: 135  VWIVVQNRKTGEVMNGYSQRVEFAQMPAYCDHCCHVGHKETDC 177


>ref|XP_006576082.1| PREDICTED: uncharacterized protein LOC102659506 [Glycine max]
          Length = 964

 Score =  395 bits (1016), Expect = e-107
 Identities = 202/506 (39%), Positives = 301/506 (59%), Gaps = 1/506 (0%)
 Frame = -3

Query: 2788 DAQFILARAICKVTALSFHICFIYGFHTVVSRRPLW-DTXXXXXXXXXXXXXLGDFNCVM 2612
            +AQ I     CK TA  F + FIYG H++++RR LW +              +GDFN ++
Sbjct: 458  NAQLIHCAIDCKTTAKRFQVSFIYGLHSIMARRSLWINLNSINANMNCPWLLIGDFNSIL 517

Query: 2611 KASERLNGTEVSSYETRDLLQCCLSAGLSDLNSIGSFHTWTNNTVLCKLDRAMANEAWFS 2432
              ++R NG E+++YE +D + C    GL  +N+ G  +TWTN+ V  KLDRA+ N+AWF+
Sbjct: 518  SPTDRFNGAELNAYELQDFVDCYSDLGLGSINTHGPLYTWTNSRVWSKLDRALCNQAWFN 577

Query: 2431 SNHAGMANFLPSGCLSDHSPCIVALFQHSRPTKKNFKFFNMWCDHADFEQLISEHWEEPI 2252
            S        +    +SDH+P +V            FKF N+  DH +F +++++ W++ I
Sbjct: 578  SFGNSACEVMEFISISDHTPLVVTTELVVPRGNSPFKFNNLIVDHPNFLRIVADGWKQNI 637

Query: 2251 HGTKQFTLCKKLKRLKGPLKALNKKHFSHISSRAEKARNDFDQALEEFHLQPANTALQLQ 2072
            HG   F +CKKLK LK PLK L K+ FS+IS+R E A  +++  L      P + +L   
Sbjct: 638  HGCSMFKVCKKLKALKAPLKNLFKQEFSNISNRVELAEAEYNSVLNSIKQNPQDPSLLAL 697

Query: 2071 IADLKLKARSLSEAERSFYFQQAKCKHLTYSDRGTKFFHSLVKRNTKRNHIAAITKMDGT 1892
                + +   L +AE   + Q  K K+L  +D+ +KFFH+L+KRN     IAAI   DG 
Sbjct: 698  ANRTRGQTIMLRKAESMKFAQLIKNKYLLQADKCSKFFHALIKRNKHSRFIAAIRLEDGH 757

Query: 1891 VTTSSCEVVKEFLDFYDNLLGTEGDCQPINLEICQDGPLITQNQSRDLLRPISIDEIKSA 1712
             T+S  E+   F++ + N        Q  ++ IC  GP +  +    LL P S  ++ + 
Sbjct: 758  NTSSQDEIALAFVNHFRNFFSAHELTQTPSISICNRGPKVPTDCFAALLCPTSKQKVWNI 817

Query: 1711 LFSIGDDKSPGPDGYTAQFYKKAWNIVGVQFSQAIMEFFTSGSLLRMINHTVIALVPKSD 1532
            +  + ++K+PGPDG+   F+KKAWNIVG     A+ EFFT+G +L+ +NH +I L+PK D
Sbjct: 818  ISVMANNKAPGPDGFNVLFFKKAWNIVGDDIFAAVNEFFTTGKILKQLNHAIIVLIPKHD 877

Query: 1531 HASTVGDFRPIACCNVTYKVIAKILADRLSVTLGTLIDKAQSAFVPGRSMLDNIHMVQEL 1352
             AS V  FRPI+CCN+ YK+++KILA+R++  L T+I + Q+AF+  R M+DNI +VQE+
Sbjct: 878  QASQVNHFRPISCCNLLYKIVSKILANRIAPVLETIIGETQTAFIKNRKMMDNIFLVQEI 937

Query: 1351 LKHYNRKRISPRCILKIDLKKAYDTI 1274
            L+ Y RKR SPRC+LKIDL KAYD I
Sbjct: 938  LRKYARKRPSPRCLLKIDLHKAYDFI 963



 Score =  254 bits (648), Expect = 3e-64
 Identities = 127/259 (49%), Positives = 162/259 (62%), Gaps = 5/259 (1%)
 Frame = -1

Query: 4299 SRTLGTEDTYTSDSDCSASQDRATKPP----QTTAPWADLFKTNRSPQMGLALT-EIKDQ 4135
            S TLG  D+ T+D D S S    + P     +   PW +LFK NRSP  G  +       
Sbjct: 100  SCTLGDNDS-TTDDDSSHSCGSKSSPQLDNNKALTPWVNLFKDNRSPSKGFGMKFSPPPS 158

Query: 4134 PEEVTIMSHESFDVHTAWGFCIVGYIAGRFPGKTALLRVCDEWNVKYKYYTHRSGWLVFK 3955
             +EV +   +   +  AWG  ++GY+AGRFPGK ALL  C +W VK+ Y  H SGWLVFK
Sbjct: 159  DDEVLLEETDLQPLEEAWGHSLIGYVAGRFPGKKALLDCCKKWGVKFSYSAHESGWLVFK 218

Query: 3954 FENEEDKAKVLQGGPYFVFGRPLMIKSLPYCFQFDETDFHDVPVWVTLPGLPLECWHPMA 3775
            FE+E+D  +VL  GPYF+F RPL++K +P  F F   +   +PVWV L  LPLE W+P A
Sbjct: 219  FESEDDLNQVLSAGPYFIFQRPLLLKVMPAFFDFGNEELSKIPVWVKLRNLPLELWNPQA 278

Query: 3774 LSKICSKVGKPISSDGLTASRDRLSYARVLVEVDASKPLVKSVPIKLPNGQTRVQEIRFE 3595
            L KI SK+G PI SD LTAS+  +S+AR LVEVDAS  L+  V  +LP G+T VQ+I +E
Sbjct: 279  LGKILSKIGSPIRSDHLTASKGSISFARALVEVDASLELIDEVRFRLPTGKTFVQKIEYE 338

Query: 3594 HEPRFCTSCKMLGHDLENC 3538
            + P FCT CKM GH L NC
Sbjct: 339  NRPSFCTHCKMTGHRLTNC 357