BLASTX nr result
ID: Rauwolfia21_contig00005211
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00005211
(967 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003630090.1| U6 snRNA-associated Sm-like protein LSm4 [Me... 153 6e-41
ref|XP_003625914.1| U6 snRNA-associated Sm-like protein LSm4 [Me... 170 9e-40
ref|XP_002874352.1| hypothetical protein ARALYDRAFT_326933 [Arab... 170 9e-40
ref|XP_006408062.1| hypothetical protein EUTSA_v10021732mg [Eutr... 169 2e-39
ref|XP_006288890.1| hypothetical protein CARUB_v10002252mg [Caps... 169 2e-39
ref|NP_198124.1| U6 snRNA-associated Sm-like protein LSm4 [Arab... 169 2e-39
gb|AAM13039.1| unknown protein [Arabidopsis thaliana] gi|2213652... 169 2e-39
gb|AAM65462.1| glycine rich protein-like [Arabidopsis thaliana] 169 2e-39
gb|EXB36416.1| hypothetical protein L484_001116 [Morus notabilis] 166 9e-39
ref|NP_001042629.1| Os01g0256900 [Oryza sativa Japonica Group] g... 166 9e-39
ref|XP_006645725.1| PREDICTED: probable U6 snRNA-associated Sm-l... 166 9e-39
ref|XP_006444300.1| hypothetical protein CICLE_v10022685mg [Citr... 166 9e-39
ref|XP_006432790.1| hypothetical protein CICLE_v10002769mg [Citr... 166 9e-39
ref|XP_006840544.1| hypothetical protein AMTR_s00045p00214370 [A... 166 9e-39
ref|XP_004967816.1| PREDICTED: probable U6 snRNA-associated Sm-l... 166 9e-39
gb|EMS64714.1| hypothetical protein TRIUR3_16831 [Triticum urartu] 166 9e-39
gb|EMJ01688.1| hypothetical protein PRUPE_ppa012867mg [Prunus pe... 166 9e-39
tpg|DAA53991.1| TPA: hypothetical protein ZEAMMB73_426325 [Zea m... 166 9e-39
tpg|DAA53989.1| TPA: hypothetical protein ZEAMMB73_426325, parti... 166 9e-39
ref|XP_003566534.1| PREDICTED: probable U6 snRNA-associated Sm-l... 166 9e-39
>ref|XP_003630090.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355524112|gb|AET04566.1| U6 snRNA-associated Sm-like
protein LSm4 [Medicago truncatula]
Length = 161
Score = 153 bits (386), Expect(2) = 6e-41
Identities = 69/72 (95%), Positives = 70/72 (97%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKV 543
YLRVPDEV + V
Sbjct: 68 YLRVPDEVCNGV 79
Score = 42.4 bits (98), Expect(2) = 6e-41
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Frame = -1
Query: 553 LTKFRKTRAVQIENHLGLVEEEAEVG-MMVLLADKEKELEGAWMMEVQKLEVEAREGLWA 377
LTKFRK RAVQI +HL EVG M+++L D +++ G +M V E EA GL A
Sbjct: 83 LTKFRKKRAVQIASHLVWDVVGVEVGRMLLVLVDAKQKALGVVLMMVVLEEPEAEAGL-A 141
Query: 376 SLVAAKEVDV 347
+ + +E +V
Sbjct: 142 KVESLEEAEV 151
>ref|XP_003625914.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|357516335|ref|XP_003628456.1| U6 snRNA-associated
Sm-like protein LSm4 [Medicago truncatula]
gi|355500929|gb|AES82132.1| U6 snRNA-associated Sm-like
protein LSm4 [Medicago truncatula]
gi|355522478|gb|AET02932.1| U6 snRNA-associated Sm-like
protein LSm4 [Medicago truncatula]
Length = 150
Score = 170 bits (430), Expect = 9e-40
Identities = 77/79 (97%), Positives = 79/79 (100%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+KSR+
Sbjct: 68 YLRVPDEVIDKVQEEKSRT 86
>ref|XP_002874352.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata] gi|297320189|gb|EFH50611.1| hypothetical protein
ARALYDRAFT_326933 [Arabidopsis lyrata subsp. lyrata]
Length = 143
Score = 170 bits (430), Expect = 9e-40
Identities = 77/79 (97%), Positives = 79/79 (100%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+KSR+
Sbjct: 68 YLRVPDEVIDKVQEEKSRT 86
>ref|XP_006408062.1| hypothetical protein EUTSA_v10021732mg [Eutrema salsugineum]
gi|557109208|gb|ESQ49515.1| hypothetical protein
EUTSA_v10021732mg [Eutrema salsugineum]
Length = 138
Score = 169 bits (427), Expect = 2e-39
Identities = 76/79 (96%), Positives = 79/79 (100%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+K+R+
Sbjct: 68 YLRVPDEVIDKVQEEKTRT 86
>ref|XP_006288890.1| hypothetical protein CARUB_v10002252mg [Capsella rubella]
gi|482557596|gb|EOA21788.1| hypothetical protein
CARUB_v10002252mg [Capsella rubella]
Length = 129
Score = 169 bits (427), Expect = 2e-39
Identities = 76/79 (96%), Positives = 79/79 (100%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+K+R+
Sbjct: 68 YLRVPDEVIDKVQEEKTRT 86
>ref|NP_198124.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
gi|332006335|gb|AED93718.1| U6 snRNA-associated Sm-like
protein LSm4 [Arabidopsis thaliana]
Length = 129
Score = 169 bits (427), Expect = 2e-39
Identities = 76/79 (96%), Positives = 79/79 (100%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+K+R+
Sbjct: 68 YLRVPDEVIDKVQEEKTRT 86
>gb|AAM13039.1| unknown protein [Arabidopsis thaliana] gi|22136528|gb|AAM91342.1|
unknown protein [Arabidopsis thaliana]
Length = 129
Score = 169 bits (427), Expect = 2e-39
Identities = 76/79 (96%), Positives = 79/79 (100%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+K+R+
Sbjct: 68 YLRVPDEVIDKVQEEKTRT 86
>gb|AAM65462.1| glycine rich protein-like [Arabidopsis thaliana]
Length = 129
Score = 169 bits (427), Expect = 2e-39
Identities = 76/79 (96%), Positives = 79/79 (100%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+K+R+
Sbjct: 68 YLRVPDEVIDKVQEEKTRT 86
>gb|EXB36416.1| hypothetical protein L484_001116 [Morus notabilis]
Length = 165
Score = 166 bits (421), Expect = 9e-39
Identities = 78/80 (97%), Positives = 79/80 (98%), Gaps = 1/80 (1%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK
Sbjct: 23 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 82
Query: 578 YLRVPDEVIDKVQED-KSRS 522
YLRVPDEVIDKVQE+ KSRS
Sbjct: 83 YLRVPDEVIDKVQEETKSRS 102
>ref|NP_001042629.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|12230291|sp|Q9LGE6.1|LSM4_ORYSJ RecName:
Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|9711887|dbj|BAB07978.1| putative glycine-rich protein
2 [Oryza sativa Japonica Group]
gi|108792648|dbj|BAE95809.1| putative glycine-rich
protein 2 [Oryza sativa Japonica Group]
gi|113532160|dbj|BAF04543.1| Os01g0256900 [Oryza sativa
Japonica Group] gi|215704752|dbj|BAG94780.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|222618133|gb|EEE54265.1| hypothetical protein
OsJ_01157 [Oryza sativa Japonica Group]
Length = 147
Score = 166 bits (421), Expect = 9e-39
Identities = 75/79 (94%), Positives = 78/79 (98%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+ S+S
Sbjct: 68 YLRVPDEVIDKVQEETSKS 86
>ref|XP_006645725.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Oryza brachyantha]
Length = 169
Score = 166 bits (421), Expect = 9e-39
Identities = 75/79 (94%), Positives = 78/79 (98%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECYIRGNTIK
Sbjct: 30 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIK 89
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+ S+S
Sbjct: 90 YLRVPDEVIDKVQEETSKS 108
>ref|XP_006444300.1| hypothetical protein CICLE_v10022685mg [Citrus clementina]
gi|568852536|ref|XP_006479931.1| PREDICTED: probable U6
snRNA-associated Sm-like protein LSm4-like isoform X1
[Citrus sinensis] gi|568852538|ref|XP_006479932.1|
PREDICTED: probable U6 snRNA-associated Sm-like protein
LSm4-like isoform X2 [Citrus sinensis]
gi|557546562|gb|ESR57540.1| hypothetical protein
CICLE_v10022685mg [Citrus clementina]
Length = 150
Score = 166 bits (421), Expect = 9e-39
Identities = 78/80 (97%), Positives = 79/80 (98%), Gaps = 1/80 (1%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQED-KSRS 522
YLRVPDEVIDKVQE+ KSRS
Sbjct: 68 YLRVPDEVIDKVQEETKSRS 87
>ref|XP_006432790.1| hypothetical protein CICLE_v10002769mg [Citrus clementina]
gi|567880465|ref|XP_006432791.1| hypothetical protein
CICLE_v10002769mg [Citrus clementina]
gi|568835042|ref|XP_006471593.1| PREDICTED: probable U6
snRNA-associated Sm-like protein LSm4-like [Citrus
sinensis] gi|557534912|gb|ESR46030.1| hypothetical
protein CICLE_v10002769mg [Citrus clementina]
gi|557534913|gb|ESR46031.1| hypothetical protein
CICLE_v10002769mg [Citrus clementina]
Length = 150
Score = 166 bits (421), Expect = 9e-39
Identities = 78/80 (97%), Positives = 79/80 (98%), Gaps = 1/80 (1%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQED-KSRS 522
YLRVPDEVIDKVQE+ KSRS
Sbjct: 68 YLRVPDEVIDKVQEETKSRS 87
>ref|XP_006840544.1| hypothetical protein AMTR_s00045p00214370 [Amborella trichopoda]
gi|548842262|gb|ERN02219.1| hypothetical protein
AMTR_s00045p00214370 [Amborella trichopoda]
Length = 146
Score = 166 bits (421), Expect = 9e-39
Identities = 75/79 (94%), Positives = 78/79 (98%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+ ++S
Sbjct: 68 YLRVPDEVIDKVQEETNKS 86
>ref|XP_004967816.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Setaria italica]
Length = 146
Score = 166 bits (421), Expect = 9e-39
Identities = 75/79 (94%), Positives = 78/79 (98%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+ S+S
Sbjct: 68 YLRVPDEVIDKVQEETSKS 86
>gb|EMS64714.1| hypothetical protein TRIUR3_16831 [Triticum urartu]
Length = 179
Score = 166 bits (421), Expect = 9e-39
Identities = 75/79 (94%), Positives = 78/79 (98%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECYIRGNTIK
Sbjct: 44 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIK 103
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+ S+S
Sbjct: 104 YLRVPDEVIDKVQEETSKS 122
>gb|EMJ01688.1| hypothetical protein PRUPE_ppa012867mg [Prunus persica]
Length = 151
Score = 166 bits (421), Expect = 9e-39
Identities = 78/80 (97%), Positives = 79/80 (98%), Gaps = 1/80 (1%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQED-KSRS 522
YLRVPDEVIDKVQE+ KSRS
Sbjct: 68 YLRVPDEVIDKVQEETKSRS 87
>tpg|DAA53991.1| TPA: hypothetical protein ZEAMMB73_426325 [Zea mays]
Length = 172
Score = 166 bits (421), Expect = 9e-39
Identities = 75/79 (94%), Positives = 78/79 (98%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+ S+S
Sbjct: 68 YLRVPDEVIDKVQEETSKS 86
>tpg|DAA53989.1| TPA: hypothetical protein ZEAMMB73_426325, partial [Zea mays]
Length = 112
Score = 166 bits (421), Expect = 9e-39
Identities = 75/79 (94%), Positives = 78/79 (98%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+ S+S
Sbjct: 68 YLRVPDEVIDKVQEETSKS 86
>ref|XP_003566534.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Brachypodium distachyon] gi|326528247|dbj|BAJ93305.1|
predicted protein [Hordeum vulgare subsp. vulgare]
Length = 142
Score = 166 bits (421), Expect = 9e-39
Identities = 75/79 (94%), Positives = 78/79 (98%)
Frame = -3
Query: 758 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIK 579
KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECYIRGNTIK
Sbjct: 8 KTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIK 67
Query: 578 YLRVPDEVIDKVQEDKSRS 522
YLRVPDEVIDKVQE+ S+S
Sbjct: 68 YLRVPDEVIDKVQEETSKS 86