BLASTX nr result
ID: Rauwolfia21_contig00003320
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00003320
(675 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002307132.1| hypothetical protein POPTR_0005s08690g [Popu... 161 2e-53
ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II su... 160 4e-53
ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycin... 157 5e-53
gb|EOX92292.1| RNA polymerase II, Rpb4, core protein isoform 1 [... 162 5e-53
ref|XP_006579388.1| PREDICTED: uncharacterized protein LOC100527... 157 5e-53
ref|NP_001237937.1| uncharacterized protein LOC100499661 [Glycin... 157 5e-53
ref|XP_006428010.1| hypothetical protein CICLE_v10026735mg [Citr... 158 7e-53
gb|ESW06234.1| hypothetical protein PHAVU_010G030200g [Phaseolus... 157 7e-53
gb|AFK35928.1| unknown [Lotus japonicus] 157 7e-53
ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ri... 160 2e-52
ref|NP_001238073.1| uncharacterized protein LOC100527316 [Glycin... 157 2e-52
ref|XP_004509486.1| PREDICTED: DNA-directed RNA polymerase II su... 156 2e-52
ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II su... 159 3e-52
ref|XP_006361114.1| PREDICTED: DNA-directed RNA polymerase II su... 156 3e-52
gb|EPS68209.1| hypothetical protein M569_06563 [Genlisea aurea] 155 6e-52
ref|XP_004241362.1| PREDICTED: DNA-directed RNA polymerase II su... 155 6e-52
ref|XP_003626907.1| DNA-directed RNA polymerase II subunit RPB4 ... 154 6e-52
ref|XP_006288864.1| hypothetical protein CARUB_v10002229mg [Caps... 157 1e-51
ref|NP_196554.1| RNA polymerase II, Rpb4, core protein [Arabidop... 156 1e-51
ref|XP_002871392.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata] g... 156 1e-51
>ref|XP_002307132.1| hypothetical protein POPTR_0005s08690g [Populus trichocarpa]
gi|224096326|ref|XP_002310604.1| hypothetical protein
POPTR_0007s06660g [Populus trichocarpa]
gi|222853507|gb|EEE91054.1| hypothetical protein
POPTR_0007s06660g [Populus trichocarpa]
gi|222856581|gb|EEE94128.1| hypothetical protein
POPTR_0005s08690g [Populus trichocarpa]
Length = 138
Score = 161 bits (407), Expect(2) = 2e-53
Identities = 78/89 (87%), Positives = 85/89 (95%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGD+FLK KCLMNCEVALILEHKYE LQQM +DPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDDFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREILSR+QLAEFELC
Sbjct: 64 RFSRYKNPDAVRQVREILSRYQLAEFELC 92
Score = 75.1 bits (183), Expect(2) = 2e-53
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AIAMVPSIK +GRA DDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIEKMLNDLS 132
>ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis
vinifera] gi|147856183|emb|CAN80281.1| hypothetical
protein VITISV_017448 [Vitis vinifera]
gi|302143481|emb|CBI22042.3| unnamed protein product
[Vitis vinifera]
Length = 138
Score = 160 bits (404), Expect(2) = 4e-53
Identities = 77/89 (86%), Positives = 85/89 (95%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEVA+ILEHKYE LQQM +DP+NQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREILSR+QLAEFELC
Sbjct: 64 RFSRYKNPDAVRQVREILSRYQLAEFELC 92
Score = 75.1 bits (183), Expect(2) = 4e-53
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AIAMVPSIK +GRA DDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIEKMLNDLS 132
>ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycine max]
gi|255632992|gb|ACU16850.1| unknown [Glycine max]
Length = 195
Score = 157 bits (398), Expect(2) = 5e-53
Identities = 76/89 (85%), Positives = 84/89 (94%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEVALILEHKYE LQQ +DPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREIL+R++LAEFELC
Sbjct: 64 RFSRYKNPDAVRQVREILARYELAEFELC 92
Score = 77.0 bits (188), Expect(2) = 5e-53
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AIAMVPSIK+RGRA DDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAIAMVPSIKSRGRAQDDEAIEKMLNDLS 132
>gb|EOX92292.1| RNA polymerase II, Rpb4, core protein isoform 1 [Theobroma cacao]
gi|508700397|gb|EOX92293.1| RNA polymerase II, Rpb4,
core protein isoform 1 [Theobroma cacao]
Length = 138
Score = 162 bits (409), Expect(2) = 5e-53
Identities = 79/89 (88%), Positives = 85/89 (95%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIG+EFLK KCLMNCEVALILEHKYE LQQM EDPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGEEFLKAKCLMNCEVALILEHKYEQLQQMSEDPMNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREILSR+QLAEFELC
Sbjct: 64 RFSRYKNPDAVRQVREILSRYQLAEFELC 92
Score = 72.8 bits (177), Expect(2) = 5e-53
Identities = 35/41 (85%), Positives = 38/41 (92%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AIAMVPSIK +GRA DD+AIE+MLNDLS
Sbjct: 92 CVLGNLCPETVEEAIAMVPSIKTKGRAHDDDAIERMLNDLS 132
>ref|XP_006579388.1| PREDICTED: uncharacterized protein LOC100527704 isoform X1 [Glycine
max]
Length = 138
Score = 157 bits (398), Expect(2) = 5e-53
Identities = 76/89 (85%), Positives = 84/89 (94%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEVALILEHKYE LQQ +DPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREIL+R++LAEFELC
Sbjct: 64 RFSRYKNPDAVRQVREILARYELAEFELC 92
Score = 77.0 bits (188), Expect(2) = 5e-53
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AIAMVPSIK+RGRA DDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAIAMVPSIKSRGRAQDDEAIEKMLNDLS 132
>ref|NP_001237937.1| uncharacterized protein LOC100499661 [Glycine max]
gi|255625623|gb|ACU13156.1| unknown [Glycine max]
Length = 138
Score = 157 bits (398), Expect(2) = 5e-53
Identities = 76/89 (85%), Positives = 84/89 (94%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEV+LILEHKYE LQQ +DPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQISQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREIL+R+QLAEFELC
Sbjct: 64 RFSRYKNPDAVRQVREILARYQLAEFELC 92
Score = 77.0 bits (188), Expect(2) = 5e-53
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AIAMVPSIK+RGRA DDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAIAMVPSIKSRGRAQDDEAIEKMLNDLS 132
>ref|XP_006428010.1| hypothetical protein CICLE_v10026735mg [Citrus clementina]
gi|568884040|ref|XP_006494738.1| PREDICTED: DNA-directed
RNA polymerase II subunit 4-like isoform X2 [Citrus
sinensis] gi|557530000|gb|ESR41250.1| hypothetical
protein CICLE_v10026735mg [Citrus clementina]
Length = 138
Score = 158 bits (399), Expect(2) = 7e-53
Identities = 76/89 (85%), Positives = 84/89 (94%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEVA+IL+HKYE LQQ +DPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREILSR+QLAEFELC
Sbjct: 64 RFSRYKNPDAVRQVREILSRYQLAEFELC 92
Score = 76.3 bits (186), Expect(2) = 7e-53
Identities = 38/41 (92%), Positives = 38/41 (92%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AIAMVPSIK RGRA DDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLS 132
>gb|ESW06234.1| hypothetical protein PHAVU_010G030200g [Phaseolus vulgaris]
Length = 138
Score = 157 bits (398), Expect(2) = 7e-53
Identities = 76/89 (85%), Positives = 84/89 (94%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEV+LILEHKYE LQQ +DPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREIL+R+QLAEFELC
Sbjct: 64 RFSRYKNPDAVRQVREILARYQLAEFELC 92
Score = 76.6 bits (187), Expect(2) = 7e-53
Identities = 38/41 (92%), Positives = 38/41 (92%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AIAMVPSIK RGRA DDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLS 132
>gb|AFK35928.1| unknown [Lotus japonicus]
Length = 138
Score = 157 bits (398), Expect(2) = 7e-53
Identities = 76/89 (85%), Positives = 84/89 (94%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEV+LILEHKYE LQQ +DPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREIL+R+QLAEFELC
Sbjct: 64 RFSRYKNPDAVRQVREILARYQLAEFELC 92
Score = 76.6 bits (187), Expect(2) = 7e-53
Identities = 38/41 (92%), Positives = 38/41 (92%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AIAMVPSIK RGRA DDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLS 132
>ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223538818|gb|EEF40418.1| DNA-directed RNA polymerase
II, putative [Ricinus communis]
Length = 138
Score = 160 bits (405), Expect(2) = 2e-52
Identities = 78/89 (87%), Positives = 84/89 (94%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN ++LKIGDEFLK KCLMNCEVALILEHKYE LQQM DPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSNDPMNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREILSR+QLAEFELC
Sbjct: 64 RFSRYKNPDAVRQVREILSRYQLAEFELC 92
Score = 72.8 bits (177), Expect(2) = 2e-52
Identities = 36/41 (87%), Positives = 37/41 (90%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AIAMVPSIK +GRA DDEAIEKML DLS
Sbjct: 92 CVLGNLCPETVEEAIAMVPSIKTKGRAHDDEAIEKMLTDLS 132
>ref|NP_001238073.1| uncharacterized protein LOC100527316 [Glycine max]
gi|255632071|gb|ACU16388.1| unknown [Glycine max]
Length = 138
Score = 157 bits (398), Expect(2) = 2e-52
Identities = 76/89 (85%), Positives = 84/89 (94%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEV+LILEHKYE LQQ +DPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREIL+R+QLAEFELC
Sbjct: 64 RFSRYKNPDAVRQVREILARYQLAEFELC 92
Score = 75.5 bits (184), Expect(2) = 2e-52
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AIA+VPSIK+RGRA DDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAIAVVPSIKSRGRAQDDEAIEKMLNDLS 132
>ref|XP_004509486.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cicer
arietinum] gi|502155876|ref|XP_004510223.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB4-like [Cicer
arietinum]
Length = 138
Score = 156 bits (395), Expect(2) = 2e-52
Identities = 75/89 (84%), Positives = 84/89 (94%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEV+LIL+HKYE LQQ +DPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILDHKYEQLQQSSDDPMNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREIL+R+QLAEFELC
Sbjct: 64 RFSRYKNPDAVRQVREILARYQLAEFELC 92
Score = 76.6 bits (187), Expect(2) = 2e-52
Identities = 38/41 (92%), Positives = 38/41 (92%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AIAMVPSIK RGRA DDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLS 132
>ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus] gi|449526195|ref|XP_004170099.1|
PREDICTED: DNA-directed RNA polymerase II subunit
RPB4-like [Cucumis sativus]
Length = 138
Score = 159 bits (403), Expect(2) = 3e-52
Identities = 77/89 (86%), Positives = 84/89 (94%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEV+LILEHKYE LQQM EDP NQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVRE+LSR+QLAEFELC
Sbjct: 64 RFSRYKNPDAVRQVREVLSRYQLAEFELC 92
Score = 72.8 bits (177), Expect(2) = 3e-52
Identities = 35/41 (85%), Positives = 37/41 (90%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AIAMVPS+K +GR DDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDLS 132
>ref|XP_006361114.1| PREDICTED: DNA-directed RNA polymerase II subunit 4-like [Solanum
tuberosum]
Length = 138
Score = 156 bits (394), Expect(2) = 3e-52
Identities = 76/89 (85%), Positives = 82/89 (92%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEVALILEHKYE LQQM +DP NQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPTNQISQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQ REILSR+ LAEFELC
Sbjct: 64 RFSRYKNPDAVRQAREILSRYPLAEFELC 92
Score = 75.9 bits (185), Expect(2) = 3e-52
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE IAMVPSIKNRGRALD+EAIEKML DLS
Sbjct: 92 CVLGNLCPETVEEGIAMVPSIKNRGRALDEEAIEKMLTDLS 132
>gb|EPS68209.1| hypothetical protein M569_06563 [Genlisea aurea]
Length = 138
Score = 155 bits (392), Expect(2) = 6e-52
Identities = 77/88 (87%), Positives = 81/88 (92%)
Frame = +1
Query: 115 EEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVKR 294
EEEN A+LKI DEFLK KCLMNCEVALILEHKYE LQQ +DPMNQMSQVFEKS QYVKR
Sbjct: 5 EEENAAELKIPDEFLKAKCLMNCEVALILEHKYEQLQQTADDPMNQMSQVFEKSHQYVKR 64
Query: 295 FSRYKNPDSVRQVREILSRFQLAEFELC 378
FSRYKNPD+VRQVREILSR+QLAEFELC
Sbjct: 65 FSRYKNPDAVRQVREILSRYQLAEFELC 92
Score = 75.9 bits (185), Expect(2) = 6e-52
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AI+MVPSIK +GRALDDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAISMVPSIKAKGRALDDEAIEKMLNDLS 132
>ref|XP_004241362.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Solanum lycopersicum]
Length = 138
Score = 155 bits (392), Expect(2) = 6e-52
Identities = 75/89 (84%), Positives = 82/89 (92%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEVALILEHKYE +QQM +DP NQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQIQQMSDDPTNQISQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQ REILSR+ LAEFELC
Sbjct: 64 RFSRYKNPDAVRQAREILSRYPLAEFELC 92
Score = 75.9 bits (185), Expect(2) = 6e-52
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE IAMVPSIKNRGRALD+EAIEKML DLS
Sbjct: 92 CVLGNLCPETVEEGIAMVPSIKNRGRALDEEAIEKMLTDLS 132
>ref|XP_003626907.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520929|gb|AET01383.1| DNA-directed RNA polymerase
II subunit RPB4 [Medicago truncatula]
gi|388497296|gb|AFK36714.1| unknown [Medicago
truncatula]
Length = 138
Score = 154 bits (390), Expect(2) = 6e-52
Identities = 75/89 (84%), Positives = 83/89 (93%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEV+LILEHKYE LQQ +D MNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREIL+R+QLAEFELC
Sbjct: 64 RFSRYKNPDAVRQVREILARYQLAEFELC 92
Score = 76.6 bits (187), Expect(2) = 6e-52
Identities = 38/41 (92%), Positives = 38/41 (92%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE AIAMVPSIK RGRA DDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAIAMVPSIKTRGRAQDDEAIEKMLNDLS 132
>ref|XP_006288864.1| hypothetical protein CARUB_v10002229mg [Capsella rubella]
gi|482557570|gb|EOA21762.1| hypothetical protein
CARUB_v10002229mg [Capsella rubella]
Length = 138
Score = 157 bits (398), Expect(2) = 1e-51
Identities = 77/89 (86%), Positives = 83/89 (93%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEV+LILEHKYE LQQ+ EDPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREILSR QL EFELC
Sbjct: 64 RFSRYKNPDAVRQVREILSRHQLTEFELC 92
Score = 72.8 bits (177), Expect(2) = 1e-51
Identities = 34/41 (82%), Positives = 38/41 (92%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE A+AMVPS+K +GRA DD+AIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAVAMVPSLKTKGRAHDDDAIEKMLNDLS 132
>ref|NP_196554.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
gi|75098524|sp|O48890.1|NRPB4_ARATH RecName:
Full=DNA-directed RNA polymerase II subunit 4; AltName:
Full=15.9 kDa subunit of RNA polymerase II; AltName:
Full=DNA-directed RNA polymerase II subunit D
gi|2760362|gb|AAB95261.1| 15.9 kDa subunit of RNA
polymerase II [Arabidopsis thaliana]
gi|9758970|dbj|BAB09413.1| 15.9 kDa subunit of RNA
polymerase II [Arabidopsis thaliana]
gi|21554212|gb|AAM63291.1| 15.9 kDa subunit of RNA
polymerase II [Arabidopsis thaliana]
gi|98960869|gb|ABF58918.1| At5g09920 [Arabidopsis
thaliana] gi|222423668|dbj|BAH19801.1| AT5G09920
[Arabidopsis thaliana] gi|332004084|gb|AED91467.1| RNA
polymerase II, Rpb4, core protein [Arabidopsis thaliana]
Length = 138
Score = 156 bits (394), Expect(2) = 1e-51
Identities = 76/89 (85%), Positives = 83/89 (93%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEV+LILEHK+E LQQ+ EDPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREILSR QL EFELC
Sbjct: 64 RFSRYKNPDAVRQVREILSRHQLTEFELC 92
Score = 73.9 bits (180), Expect(2) = 1e-51
Identities = 35/41 (85%), Positives = 38/41 (92%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE A+AMVPS+K +GRA DDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAVAMVPSLKTKGRAHDDEAIEKMLNDLS 132
>ref|XP_002871392.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
gi|297317229|gb|EFH47651.1| RPB15.9 [Arabidopsis lyrata
subsp. lyrata]
Length = 138
Score = 156 bits (394), Expect(2) = 1e-51
Identities = 76/89 (85%), Positives = 83/89 (93%)
Frame = +1
Query: 112 KEEENVAKLKIGDEFLKVKCLMNCEVALILEHKYE*LQQMFEDPMNQMSQVFEKSLQYVK 291
+EEEN A+LKIGDEFLK KCLMNCEV+LILEHK+E LQQ+ EDPMNQ+SQVFEKSLQYVK
Sbjct: 4 EEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQVSEDPMNQVSQVFEKSLQYVK 63
Query: 292 RFSRYKNPDSVRQVREILSRFQLAEFELC 378
RFSRYKNPD+VRQVREILSR QL EFELC
Sbjct: 64 RFSRYKNPDAVRQVREILSRHQLTEFELC 92
Score = 73.9 bits (180), Expect(2) = 1e-51
Identities = 35/41 (85%), Positives = 38/41 (92%)
Frame = +2
Query: 374 CVLGNLCPETVE*AIAMVPSIKNRGRALDDEAIEKMLNDLS 496
CVLGNLCPETVE A+AMVPS+K +GRA DDEAIEKMLNDLS
Sbjct: 92 CVLGNLCPETVEEAVAMVPSLKTKGRAHDDEAIEKMLNDLS 132