BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00002013
         (373 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   176   4e-42
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]    62   8e-08
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    62   1e-07
gb|ESW05652.1| hypothetical protein PHAVU_011G1981002g, partial ...    59   7e-07
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    57   2e-06
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...    57   2e-06
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...    56   4e-06
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...    56   4e-06
emb|CAN79540.1| hypothetical protein VITISV_016973 [Vitis vinifera]    56   4e-06
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...    56   4e-06
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      56   6e-06
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc...    55   7e-06
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...    55   7e-06

>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  176 bits (445), Expect = 4e-42
 Identities = 87/123 (70%), Positives = 98/123 (79%)
 Frame = +2

Query: 2    KGYRLWCLEAKKTIVSRDVTFDESAMLSKVNPEGASGTPQQVECIPKQVEFEQTVVTPAK 181
            KGYRLWCLEAKKTI+SRDVTFDESAML KVNPEGA  TPQQVEC  KQVEFE  VV P +
Sbjct: 671  KGYRLWCLEAKKTIISRDVTFDESAMLKKVNPEGADSTPQQVECARKQVEFEPKVVIPTR 730

Query: 182  STTNDSPVAXXXXXXXXVSTQKPLQQSEPIAVRRTKRQIQKPARFADMVAYALPVVDNVP 361
            +TT+DS +A        V TQ+  QQS PIAVRR +R IQKP+RF DMVAYALPVVD++P
Sbjct: 731  NTTSDSAMAEEESDEEEVPTQESQQQSAPIAVRRQRRDIQKPSRFMDMVAYALPVVDDIP 790

Query: 362  STF 370
            ST+
Sbjct: 791  STY 793


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
 Frame = +2

Query: 2    KGYRLWCLEAK--KTIVSRDVTFDESAMLSKVNPEG-ASGTPQQVECIPKQVEFEQTVVT 172
            KGYRLWC E +  K I+SRDVTFDESAM  +    G  +GT +      ++VEFE  V  
Sbjct: 791  KGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEFGDLAGTSKTDLGANQKVEFE--VDA 848

Query: 173  PAKSTTNDSPVAXXXXXXXXVSTQKPL---QQSEPIAVRRTKRQIQKPARFADM------ 325
            P ++  +D+            S ++P+     S+ IA  R +R+I++P R+ D       
Sbjct: 849  PMENGVDDT------------SEEQPVIDQNDSQSIAAHRPRREIRRPMRYVDCVSANIT 896

Query: 326  --VAYALPVVDNV 358
              VA+AL V + +
Sbjct: 897  NPVAFALAVAEEI 909


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
 Frame = +2

Query: 2    KGYRLWCLEAK--KTIVSRDVTFDESAMLSKVNPEG-ASGTPQQVECIPKQVEFEQTVVT 172
            KGYRLWC E +  K I+SRDVTFDESAM  +    G  +GT +      ++VEFE  V  
Sbjct: 1004 KGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEFGDLAGTSKTDLGANQKVEFE--VDA 1061

Query: 173  PAKSTTNDSPVAXXXXXXXXVSTQKPL---QQSEPIAVRRTKRQIQKPARFADM------ 325
            P ++  +D+            S ++P+     S+ IA  R +R+I++P R+ D       
Sbjct: 1062 PMENGVDDT------------SEEQPVIDQNDSQSIAAXRPRREIRRPMRYVDCVSANIT 1109

Query: 326  --VAYALPVVDNV 358
              VA+AL V + +
Sbjct: 1110 NPVAFALAVAEEI 1122


>gb|ESW05652.1| hypothetical protein PHAVU_011G1981002g, partial [Phaseolus
           vulgaris]
          Length = 33

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 28/33 (84%), Positives = 29/33 (87%)
 Frame = +2

Query: 29  AKKTIVSRDVTFDESAMLSKVNPEGASGTPQQV 127
           AKKTI+SRDVTFDE AML KVNPEGA  TPQQV
Sbjct: 1   AKKTIISRDVTFDEYAMLKKVNPEGADSTPQQV 33


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
 Frame = +2

Query: 2    KGYRLWCLEAKKTIVSRDVTFDESAMLSKVNPEGASGTPQQVECIPKQVEFEQTVVTPAK 181
            KGY+LWC E KK ++SR+V F ES ML          T   VE   K     + +++   
Sbjct: 899  KGYKLWCPETKKVVISRNVVFHESVML-----HDKPSTNVPVESQEKASVQVEHLISSGH 953

Query: 182  STTNDSPVAXXXXXXXXVSTQKPLQQS--EPIAVRRTKRQIQKPARF---ADMVAYALPV 346
            +   +             S    +QQS    IA  R KR I+ P R+   A++VAYAL V
Sbjct: 954  APEKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSV 1013

Query: 347  VDNV-----PSTFS 373
             + +     PST+S
Sbjct: 1014 AEEIEGNAEPSTYS 1027


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
 Frame = +2

Query: 2    KGYRLWCLEAKKTIVSRDVTFDESAMLSKVNPEGASGTPQQVECIPKQVEFEQTVVTPAK 181
            KGY+LWC E KK ++SR+V F ES ML          T   VE   K     + +++   
Sbjct: 692  KGYKLWCPETKKVVISRNVVFHESVML-----HDKPSTNVPVESQEKASVQVEHLISSGH 746

Query: 182  STTNDSPVAXXXXXXXXVSTQKPLQQS--EPIAVRRTKRQIQKPARF---ADMVAYALPV 346
            +   +             S    +QQS    IA  R KR I+ P R+   A++VAYAL V
Sbjct: 747  APEKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSV 806

Query: 347  VDNV-----PSTFS 373
             + +     PST+S
Sbjct: 807  AEEIEGNAEPSTYS 820


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 45/132 (34%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
 Frame = +2

Query: 2    KGYRLWCLEAKKTIVSRDVTFDESAML-----SKVNPEGASGTPQQVECIPKQVEFEQT- 163
            KGY+LW  E  KT +SR V F+ES M      + V P G+    Q V    + V+ ++T 
Sbjct: 685  KGYKLWNPETNKTFMSRSVVFNESVMFNDSLPTDVIPGGSDEEQQYVSVQVEHVDDQETE 744

Query: 164  -VVTPAKSTTNDSPVAXXXXXXXXVSTQKPLQQSEPIAVRRTKRQIQKPARF---ADMVA 331
             V      T   SP                  Q EPIA RRTKR    P R     DMV 
Sbjct: 745  IVGNDVNDTVQHSPPVLQ-------------PQDEPIAHRRTKRSCGAPVRLIEECDMVY 791

Query: 332  YALPVVDNVPST 367
            YA    + V +T
Sbjct: 792  YAFSCAEQVENT 803


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
            gi|20087076|gb|AAM10749.1|AC112514_2 Putative
            retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
 Frame = +2

Query: 2    KGYRLWCLEAKKTIVSRDVTFDESAMLSKVNPEGASGTPQQVECIPKQVEFEQTVVTPAK 181
            KGY+LWC E KK ++SR+V F ES ML          T   VE   K     + +++   
Sbjct: 653  KGYKLWCPETKKVVISRNVVFHESVML-----HDKPSTNVPVESQEKASVQVEHLISSGH 707

Query: 182  STTNDSPVAXXXXXXXXVSTQKPLQQS--EPIAVRRTKRQIQKPARF---ADMVAYALPV 346
            +   ++            S    +QQS    IA  + KR I+ P R+   A++VAYAL V
Sbjct: 708  APEKENVAINLDAPVIEDSDSSIVQQSPKHSIAKDKPKRNIKPPRRYIEEANIVAYALSV 767

Query: 347  VDNV-----PSTFS 373
             + +     PST+S
Sbjct: 768  AEEIEGNVEPSTYS 781


>emb|CAN79540.1| hypothetical protein VITISV_016973 [Vitis vinifera]
          Length = 699

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 44/119 (36%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
 Frame = +2

Query: 2   KGYRLWCLEAKKTIVSRDVTFDESAMLSKVNPEGASGTPQQVECIPKQVEFEQTVVTPAK 181
           KGY LWCLE KK IVSR+V F E+ ML   +   +    Q       QVEFE    +   
Sbjct: 266 KGYELWCLETKKVIVSRBVIFYETIMLHDSSFRDSCDKEQXKS--STQVEFEFGSRSIPB 323

Query: 182 STTNDSPVAXXXXXXXXVSTQKPLQQSEPIAVRRTKRQIQKPARF--ADMVAYALPVVD 352
           ST+  S            S   P      IA  + +R I+ P R+  AD+V YAL VV+
Sbjct: 324 STSQSS-------SEMKSSVVAPSPPQYFIAKNKPRRYIKPPHRYAEADLVVYALNVVE 375


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1262

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
 Frame = +2

Query: 2    KGYRLWCLEAKKTIVSRDVTFDESAMLSKVNPEGASGTPQQVECIPKQVEFEQTVVTPAK 181
            KGY+LWC E KK ++SR+V F ES ML          T   VE   K     + +++   
Sbjct: 690  KGYKLWCPETKKVVISRNVVFHESVML-----HDKPSTNVPVESQEKASVQVEHLISSGH 744

Query: 182  STTNDSPVAXXXXXXXXVSTQKPLQQS--EPIAVRRTKRQIQKPARF---ADMVAYALPV 346
            +   ++            S    +QQS    IA  + KR I+ P R+   A++VAYAL V
Sbjct: 745  APEKENVAINLDAPVIEDSDSSIVQQSPKHSIAKDKPKRNIKPPRRYIEEANIVAYALSV 804

Query: 347  VDNV-----PSTFS 373
             + +     PST+S
Sbjct: 805  AEEIEGNVEPSTYS 818


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 11/135 (8%)
 Frame = +2

Query: 2   KGYRLWCLEAKKTIVSRDVTFDESAMLSKVNPEGASGTP-QQVECIPKQVEFEQTVVTPA 178
           KGY+LWC E KK ++SR+V F ES ML   + + ++  P +  E +  QVE    +++  
Sbjct: 601 KGYKLWCPETKKVVISRNVVFHESIML---HDKPSTNVPVESQEKVSVQVEH---LISSG 654

Query: 179 KSTTNDSPVAXXXXXXXXVSTQKPLQQS--EPIAVRRTKRQIQKPARF---ADMVAYALP 343
            +   +             S    +QQS    IA  R KR  + P R+   A++VAYAL 
Sbjct: 655 HAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAKDRPKRNTKPPRRYIEEANIVAYALS 714

Query: 344 VVDNV-----PSTFS 373
           V + +     PST+S
Sbjct: 715 VAEEIEGNAEPSTYS 729


>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1156

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 45/129 (34%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
 Frame = +2

Query: 2   KGYRLWCLEAKKTIVSRDVTFDESAMLSKVNPEGA--SGTPQQVECIPKQVEFEQTVVTP 175
           KGY+LW  +  KT +SR V F+ES M +   P      G+ ++ + +  QVE      T 
Sbjct: 625 KGYKLWNPKTNKTFMSRSVVFNESVMFNDSLPTDVILGGSDEEQQYVSVQVEHVDDQET- 683

Query: 176 AKSTTNDSPVAXXXXXXXXVSTQKPL--QQSEPIAVRRTKRQIQKPARF---ADMVAYAL 340
            +   ND  V         V    P+   Q EPIA RRTKR    P RF    DMV YA 
Sbjct: 684 -EIVGNDVNVT--------VQHSPPVLQPQDEPIAHRRTKRSCGAPIRFIEECDMVYYAF 734

Query: 341 PVVDNVPST 367
              + V +T
Sbjct: 735 SCAEQVENT 743


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 46/132 (34%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
 Frame = +2

Query: 2    KGYRLWCLEAKKTIVSRDVTFDESAML-----SKVNPEGASGTPQQVECIPKQVEFEQT- 163
            KGY+LW  E  KT +SR+V F+E  M      + V P G+    Q V    + V+ ++T 
Sbjct: 685  KGYKLWNPETNKTFMSRNVIFNEFVMFNDSLPTDVIPGGSDEEQQYVSVQVEHVDDQETE 744

Query: 164  -VVTPAKSTTNDSPVAXXXXXXXXVSTQKPLQQSEPIAVRRTKRQIQKPARF---ADMVA 331
             V      T   SP           S  +P  Q EPIA RRTKR    P R     DMV 
Sbjct: 745  IVGNDVNDTVQHSP-----------SVLQP--QDEPIAHRRTKRSCGAPVRLIEECDMVY 791

Query: 332  YALPVVDNVPST 367
            YA    + V +T
Sbjct: 792  YAFSYAEQVENT 803