BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00001835
         (1242 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...   257   e-102
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     257   e-102
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   262   e-101
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   257   e-101
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        256   e-101
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           253   e-101
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   252   e-101
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     256   e-101
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   249   e-100
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   249   2e-97
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   248   4e-94
emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera]   241   5e-93
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]          223   7e-92
emb|CAH66031.1| H0515C11.7 [Oryza sativa Indica Group]                228   7e-92
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   235   5e-91
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              234   7e-90
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              234   7e-90
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              233   1e-89
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              234   2e-89
gb|ABG22123.1| polyprotein [Prunus avium]                             268   4e-89

>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1138

 Score =  257 bits (657), Expect(2) = e-102
 Identities = 126/197 (63%), Positives = 160/197 (81%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            LIA     E+ KLKAQL+SEFEMKDLG AKKILG+EI ++R + KL+LSQ+ YI+KV+ R
Sbjct: 824  LIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGIEITKERHSGKLYLSQKGYIEKVLRR 883

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            F M  AK VSTPLAAHF+LS+ L PQ++ + EYMSR+PY+  VGSLMYAMVC+RPD++HA
Sbjct: 884  FNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSVVGSLMYAMVCSRPDLSHA 943

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            +SVVSRYMANPGKEHW+AV+WI RYL GT    L +GR+   +DG++GYVDSD+AGDLD+
Sbjct: 944  LSVVSRYMANPGKEHWKAVQWIFRYLCGTSSACLQFGRS---RDGLVGYVDSDFAGDLDR 1000

Query: 541  NRSITGYIFTLFGGVIS 591
             RS+ GY+FT+ G  +S
Sbjct: 1001 RRSLAGYVFTIGGCAVS 1017



 Score =  144 bits (362), Expect(2) = e-102
 Identities = 69/115 (60%), Positives = 91/115 (79%), Gaps = 1/115 (0%)
 Frame = +3

Query: 603  LQSTVSLSTAEVEYMALSETAKETLWMKGLVRSF-GLDDQTSIYCDSQSAIHLTENQMFH 779
            LQ+TV+LST E EYMA+SE  KET+W++GL     G+    +I+CDSQSAI LT++QMFH
Sbjct: 1022 LQATVALSTTEAEYMAISEACKETIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFH 1081

Query: 780  ERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGL 944
            ERTKHI+VRYHF+R  ++ GD+ V KI+T DNPADM+TKPV ++KF+ C  LVG+
Sbjct: 1082 ERTKHIDVRYHFIRSVITEGDVKVCKISTHDNPADMMTKPVPATKFELCSSLVGV 1136


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  257 bits (657), Expect(2) = e-102
 Identities = 126/197 (63%), Positives = 159/197 (80%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            LIA     E+ KLKAQL+SEFEMKDLG AKKILGMEI R+R + KL+LSQ+ YI+KV+ R
Sbjct: 897  LIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRR 956

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            F M  AK VSTPLAAHF+LS+ L PQ++ + EYMSR+PY   VGSLMYAMVC+R D++HA
Sbjct: 957  FNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYLSVVGSLMYAMVCSRLDLSHA 1016

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            +SVVSRYMANPGKEHW+ V+WI +YL+GT    L +GR+   +DG++GYVDSD+AGDLD+
Sbjct: 1017 LSVVSRYMANPGKEHWKVVQWIFKYLRGTSSACLQFGRS---RDGLVGYVDSDFAGDLDR 1073

Query: 541  NRSITGYIFTLFGGVIS 591
             RS+TGY+FT+ G  +S
Sbjct: 1074 RRSLTGYVFTIGGCAVS 1090



 Score =  141 bits (356), Expect(2) = e-102
 Identities = 68/115 (59%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
 Frame = +3

Query: 603  LQSTVSLSTAEVEYMALSETAKETLWMKGLVRSF-GLDDQTSIYCDSQSAIHLTENQMFH 779
            LQ+TV+LST EVEYMA+SE  KE +W++GL     G+    +I+CDSQSAI  T++QMFH
Sbjct: 1095 LQATVALSTTEVEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICFTKDQMFH 1154

Query: 780  ERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGL 944
            ERTKHI+VRYHF+R  ++ GD+ V KI+T DNPADM+TKPV ++KF+ C  LVG+
Sbjct: 1155 ERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPTTKFELCSSLVGV 1209


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  262 bits (669), Expect(2) = e-101
 Identities = 129/197 (65%), Positives = 161/197 (81%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            LIA     E+ KLKAQL+SEFEMKDLG AKKILGMEI R R + KL+LSQ+ YI+KV+ R
Sbjct: 1225 LIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRR 1284

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            F M  AK VSTPLAAHF+LS+ L PQ++ + EYMSR+PY+ AVGSLMYAMVC+RPD++HA
Sbjct: 1285 FNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHA 1344

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            +SVVSRYMANPGKEHW+AV+WI RYL+GT    L +GR+   +DG++GYVDSD+AGDLD+
Sbjct: 1345 LSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRS---RDGLVGYVDSDFAGDLDR 1401

Query: 541  NRSITGYIFTLFGGVIS 591
             RS+ GY+FT+ G  +S
Sbjct: 1402 GRSLAGYVFTIGGCAVS 1418



 Score =  135 bits (341), Expect(2) = e-101
 Identities = 76/154 (49%), Positives = 102/154 (66%), Gaps = 2/154 (1%)
 Frame = +3

Query: 603  LQSTVSLSTAEVEYMALSETAKETLWMKGLVRSF-GLDDQTSIYCDSQSAIHLTENQMFH 779
            LQ+TV+LST E EYMA+SE  KE +W++GL      +    +I+CDSQSAI LT++QMFH
Sbjct: 1423 LQATVALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFH 1482

Query: 780  ERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGLLDS*Y 959
            ERTKHI+VRYHF+R  ++ GD+ + KI+  DNPADM+TKPV ++KF+ C  LV L D+  
Sbjct: 1483 ERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPATKFELCSSLVILSDA-- 1540

Query: 960  TIWILFGEGGAS-MKMIEVFFGIQVKVENCRNCL 1058
                + GEG    M  I    G +    N R+CL
Sbjct: 1541 ---NVPGEGEHKIMSFIRAQRGREGYDPNTRHCL 1571


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  257 bits (657), Expect(2) = e-101
 Identities = 128/197 (64%), Positives = 156/197 (79%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            LIA     ++ KLK  L++EFEMKDLG A+KILGMEI RDR+ +KL LSQR YI+KV+ R
Sbjct: 994  LIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLAR 1053

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            FGM  +K + TP AA+  L+A  +PQ+EEE+EYMSR+PYA AVGSLMYAMVCTRPD+AHA
Sbjct: 1054 FGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHA 1113

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            VSVVSR+M  PG+EHWQAVK I RYL+GT D+GLIYG +   Q  + GY DSDYAGD+D 
Sbjct: 1114 VSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGD--TQCLVTGYSDSDYAGDVDT 1171

Query: 541  NRSITGYIFTLFGGVIS 591
             RS+TGY+FTL G V+S
Sbjct: 1172 RRSMTGYVFTLGGSVVS 1188



 Score =  140 bits (352), Expect(2) = e-101
 Identities = 71/118 (60%), Positives = 88/118 (74%), Gaps = 1/118 (0%)
 Frame = +3

Query: 594  RVVLQSTVSLSTAEVEYMALSETAKETLWMKGLVRSFGLD-DQTSIYCDSQSAIHLTENQ 770
            +  LQ TV+LST E EYMAL+E AKE +W+KGLV   GL  DQ ++YCDS SAI L ++Q
Sbjct: 1190 KATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQ 1249

Query: 771  MFHERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGL 944
            + HERTKHI+VRYHF+R   S   + VKK+ T DNPADM TKPV  SKF+HCLDL+ +
Sbjct: 1250 VHHERTKHIDVRYHFLR---SEKRIKVKKVGTADNPADMFTKPVPQSKFQHCLDLLNI 1304


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  256 bits (653), Expect(2) = e-101
 Identities = 124/187 (66%), Positives = 155/187 (82%)
 Frame = +1

Query: 31   NKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVERFGMDKAKHVS 210
            +KLKAQL+SEFEMKDLG AKKILGMEI R+R + KL+LSQ+ YI+KV  RF M  AK VS
Sbjct: 877  SKLKAQLSSEFEMKDLGVAKKILGMEITRERHSDKLYLSQKGYIEKVFRRFNMHDAKPVS 936

Query: 211  TPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHAVSVVSRYMAN 390
            TPLAAHF+LS+ L PQ++   EYMSR+PY+ AVGSLMYAM+C+RPD++HA+SVVSRYMAN
Sbjct: 937  TPLAAHFRLSSDLCPQSDYNIEYMSRVPYSSAVGSLMYAMICSRPDLSHALSVVSRYMAN 996

Query: 391  PGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDKNRSITGYIFT 570
            PGKEHW+ V+WI RYL GT    L +GR+   +DG++GYVDSD+AGDLD+ RS+TGY+FT
Sbjct: 997  PGKEHWKDVQWIFRYLHGTSSACLQFGRS---RDGLVGYVDSDFAGDLDRRRSLTGYVFT 1053

Query: 571  LFGGVIS 591
            + G  +S
Sbjct: 1054 IGGCAVS 1060



 Score =  141 bits (356), Expect(2) = e-101
 Identities = 68/115 (59%), Positives = 90/115 (78%), Gaps = 1/115 (0%)
 Frame = +3

Query: 603  LQSTVSLSTAEVEYMALSETAKETLWMKGLVRSF-GLDDQTSIYCDSQSAIHLTENQMFH 779
            LQ+TV+LST E EYMA+SE  KE +W++GL     G+    +I+CDSQSAI LT++QMFH
Sbjct: 1065 LQATVALSTTEAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFH 1124

Query: 780  ERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGL 944
            ERTKHI+VRYHF+R  ++ GD+ V KI+T DNPADM+TKPV ++KF+ C  LVG+
Sbjct: 1125 ERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPATKFELCSSLVGV 1179


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  253 bits (646), Expect(2) = e-101
 Identities = 125/197 (63%), Positives = 155/197 (78%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            LIA  S +E+ KLK  L+SEF+MKDLG+AKKILGMEI RDRK+  L LSQ  YIKKV++R
Sbjct: 1021 LIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQR 1080

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            F M  AK VSTP+A HFKLSA   P T+ E EYMSR+PY+ AVGSLMYAMVC+RPD+++A
Sbjct: 1081 FNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYA 1140

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            +S+VSRYM+NPGKEHW+A++WI RYL+GT    L +GR      G+IGYVDSDYA DLD+
Sbjct: 1141 MSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFGRT---DKGLIGYVDSDYAADLDR 1197

Query: 541  NRSITGYIFTLFGGVIS 591
             RS+TGY+FT+    +S
Sbjct: 1198 RRSLTGYVFTIGSCAVS 1214



 Score =  144 bits (362), Expect(2) = e-101
 Identities = 68/120 (56%), Positives = 90/120 (75%), Gaps = 1/120 (0%)
 Frame = +3

Query: 594  RVVLQSTVSLSTAEVEYMALSETAKETLWMKGLVRSF-GLDDQTSIYCDSQSAIHLTENQ 770
            R  LQS V+LST E EYMA+ E  KE +W+KGL     G++   S++CDSQSAI+LT++Q
Sbjct: 1216 RATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQ 1275

Query: 771  MFHERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGLLD 950
            MFHERTKHI+++YHFVRD +  G + V KI T DNPADM+TKP+  +KF+ C  LVGL++
Sbjct: 1276 MFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAKFELCSSLVGLIE 1335


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  252 bits (643), Expect(2) = e-101
 Identities = 125/197 (63%), Positives = 154/197 (78%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            LIA  S +E+ KLK  L+SEF+MKDLG+AKKILGMEI RDRK+  L LSQ  YIKKV++R
Sbjct: 1019 LIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQR 1078

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            F M  AK VSTP+A HFKLSA   P  + E EYMSR+PY+ AVGSLMYAMVC+RPD+++A
Sbjct: 1079 FNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYA 1138

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            +S+VSRYM+NPGKEHW+AV+WI RYL+GT    L +GR      G+IGYVDSDYA DLD+
Sbjct: 1139 MSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRT---DKGLIGYVDSDYAADLDR 1195

Query: 541  NRSITGYIFTLFGGVIS 591
             RS+TGY+FT+    +S
Sbjct: 1196 RRSLTGYVFTIGSCAVS 1212



 Score =  144 bits (364), Expect(2) = e-101
 Identities = 68/120 (56%), Positives = 91/120 (75%), Gaps = 1/120 (0%)
 Frame = +3

Query: 594  RVVLQSTVSLSTAEVEYMALSETAKETLWMKGLVRSF-GLDDQTSIYCDSQSAIHLTENQ 770
            R  LQS V+LST E EYMA+ E  KE +W+KGL     G++   S++CDSQSAI+LT++Q
Sbjct: 1214 RATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQ 1273

Query: 771  MFHERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGLLD 950
            MFHERTKHI+++YHFVRD +  G + V KI+T DNPADM+TKP+  +KF+ C  LVGL++
Sbjct: 1274 MFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGLIE 1333


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  256 bits (655), Expect(2) = e-101
 Identities = 128/197 (64%), Positives = 159/197 (80%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            LIA     E+ KLKAQL+SEFEMKDLG AKKILGMEI R+R + KL+LSQ+ YI+KV+ R
Sbjct: 927  LIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHR 986

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            F M  AK VST LAAHF+LS+ L PQ+  + EYMSR+PY+ AV SLMYAMVC+RPD++HA
Sbjct: 987  FNMHDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHA 1046

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            +SVVSRYMANPGKEHW+AV+WI RYL+GT    L +GR+    DG++GYVDSD+AGDLD+
Sbjct: 1047 LSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRS---SDGLVGYVDSDFAGDLDR 1103

Query: 541  NRSITGYIFTLFGGVIS 591
             RS+TGY+FT+ G  +S
Sbjct: 1104 RRSLTGYVFTVGGCAVS 1120



 Score =  139 bits (349), Expect(2) = e-101
 Identities = 66/115 (57%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
 Frame = +3

Query: 603  LQSTVSLSTAEVEYMALSETAKETLWMKGLVRSF-GLDDQTSIYCDSQSAIHLTENQMFH 779
            LQ+TV+LST E EYMA+SE  KE +W++GL     G+    +I+CDSQSAI LT++QMFH
Sbjct: 1125 LQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFH 1184

Query: 780  ERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGL 944
            ERTKHI++RYHF+R  ++ GD+ V KI+T DNP DM+TKPV ++KF+ C  LVG+
Sbjct: 1185 ERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKFELCSSLVGV 1239


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  249 bits (636), Expect(2) = e-100
 Identities = 124/197 (62%), Positives = 153/197 (77%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            LIA  S +E+ KLK  L+SEF+MKDLG+AKKIL MEI RDRK+  L LSQ  YIKKV++R
Sbjct: 1019 LIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQR 1078

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            F M  AK VSTP+A HFKLSA   P T+ E EYMSR+PY+ AVGSLMYAMVC+RPD+++A
Sbjct: 1079 FNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYA 1138

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            +S+VSRYM+NPGKEHW+ V+WI RYL+GT    L +GR      G+IGYVDSDYA DLD+
Sbjct: 1139 MSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKFGRT---DKGLIGYVDSDYAADLDR 1195

Query: 541  NRSITGYIFTLFGGVIS 591
             RS+TGY+FT+    +S
Sbjct: 1196 RRSLTGYVFTIGSCAVS 1212



 Score =  144 bits (364), Expect(2) = e-100
 Identities = 68/120 (56%), Positives = 91/120 (75%), Gaps = 1/120 (0%)
 Frame = +3

Query: 594  RVVLQSTVSLSTAEVEYMALSETAKETLWMKGLVRSF-GLDDQTSIYCDSQSAIHLTENQ 770
            R  LQS V+LST E EYMA+ E  KE +W+KGL     G++   S++CDSQSAI+LT++Q
Sbjct: 1214 RATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQ 1273

Query: 771  MFHERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGLLD 950
            MFHERTKHI+++YHFVRD +  G + V KI+T DNPADM+TKP+  +KF+ C  LVGL++
Sbjct: 1274 MFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGLIE 1333


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  249 bits (636), Expect(2) = 2e-97
 Identities = 124/197 (62%), Positives = 153/197 (77%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            LIA  S  ++  LK QL+SEF+MKDLG AKKILGMEI RDR +  L LSQ+ YIKKV++R
Sbjct: 1008 LIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQR 1067

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            F M  AK VSTP+A HFKLSA     T+E+ EYMSR+PY+ AVGSLMYAMVC+ PD++HA
Sbjct: 1068 FNMHDAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHA 1127

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            +S+VSRYMANPGKEHW+AV+WI RYL+GT D  L +GR      G++GYVDSD+A DLDK
Sbjct: 1128 MSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGR---IDKGLVGYVDSDFAADLDK 1184

Query: 541  NRSITGYIFTLFGGVIS 591
             RS+TGY+FT+    +S
Sbjct: 1185 RRSLTGYVFTIGSCAVS 1201



 Score =  135 bits (339), Expect(2) = 2e-97
 Identities = 63/119 (52%), Positives = 89/119 (74%), Gaps = 1/119 (0%)
 Frame = +3

Query: 594  RVVLQSTVSLSTAEVEYMALSETAKETLWMKGLVRSF-GLDDQTSIYCDSQSAIHLTENQ 770
            +  LQ  V+ ST E EYMA++E  KE++W+KGL     G+D   +++CDSQSAI LT++Q
Sbjct: 1203 KATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQ 1262

Query: 771  MFHERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGLL 947
            MFHERTKHI+++YH+VRD V+ G + V KI+  DNPADM+TKP+  +KF+ C  LVG++
Sbjct: 1263 MFHERTKHIDIKYHYVRDIVAQGKLKVCKISIHDNPADMMTKPIPVAKFELCSSLVGIV 1321


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  248 bits (633), Expect(2) = 4e-94
 Identities = 123/197 (62%), Positives = 152/197 (77%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            LIA  +  E+NKLK  L+SEFEMKDLG AKKILGMEI+RDR A  L++SQ++YI+K+++ 
Sbjct: 1318 LIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRDRDAGLLYVSQQKYIEKLMQA 1377

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            F MD +K VSTPLA HFK      P T+EE EYM  +PY+  VGSLMYAMVCTRPD+A A
Sbjct: 1378 FHMDHSKPVSTPLAQHFKFDHSTLPSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPDLAFA 1437

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            VSVVSR+M+NPGK HW+AVKWI+RYLKG+  + L+YG N     G++G+ DSD+ GDL K
Sbjct: 1438 VSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVYG-NGDVSSGLVGFTDSDHGGDLMK 1496

Query: 541  NRSITGYIFTLFGGVIS 591
             RS+T YIFTLFG  IS
Sbjct: 1497 RRSLTCYIFTLFGCAIS 1513



 Score =  125 bits (314), Expect(2) = 4e-94
 Identities = 62/121 (51%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
 Frame = +3

Query: 594  RVVLQSTVSLSTAEVEYMALSETAKETLWMKGLVRSFGLD-DQTSIYCDSQSAIHLTENQ 770
            R  LQ TV+LST E EYM+L+E  KE +W+ G + S GL+  +  IYCDSQSA+ L +N 
Sbjct: 1515 RASLQPTVALSTTEAEYMSLTEGVKEGMWLNGFLGSLGLNLSKPVIYCDSQSALCLAKNP 1574

Query: 771  MFHERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGLLD 950
            ++HERTKHI+VR +F+RD +     +++K+ T+ NPADMLTKP+++ KFKH L L   L 
Sbjct: 1575 VYHERTKHIDVRLNFIRDVIEEKLFSIEKVATEVNPADMLTKPITTEKFKHSLGLGECLQ 1634

Query: 951  S 953
            S
Sbjct: 1635 S 1635


>emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera]
          Length = 406

 Score =  241 bits (615), Expect(2) = 5e-93
 Identities = 118/196 (60%), Positives = 150/196 (76%)
 Frame = +1

Query: 1   LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
           LI   S+VEVNKLK+ L+ EF+MKDLG  KKI+G+EI+RDR   +L LSQ  Y+K+++ER
Sbjct: 94  LIVVKSMVEVNKLKSLLSKEFDMKDLGVTKKIIGIEIHRDRALGRLWLSQHNYVKRMLER 153

Query: 181 FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
           F MD AK VSTPLA HF+LS    P+T+ E   MS++PYA AVG LMYAMVCTR D+AHA
Sbjct: 154 FNMDNAKPVSTPLANHFRLSTSQCPKTDGEVNDMSKVPYASAVGCLMYAMVCTRLDLAHA 213

Query: 361 VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
           VSVVS++++NPG+ +W AVKWI RYL+GT D G+ + +  SD   + GYVD+DYAGDLD+
Sbjct: 214 VSVVSKFLSNPGRMNWDAVKWIFRYLRGTTDYGITFSKQQSD-PSVKGYVDADYAGDLDE 272

Query: 541 NRSITGYIFTLFGGVI 588
            RS  GY+FTL GG I
Sbjct: 273 RRSTIGYVFTLGGGPI 288



 Score =  128 bits (322), Expect(2) = 5e-93
 Identities = 59/113 (52%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
 Frame = +3

Query: 600 VLQSTVSLSTAEVEYMALSETAKETLWMKGLVRSFGLDDQ-TSIYCDSQSAIHLTENQMF 776
           ++QS V+L T + EYMA++ET KE+LW+ GLV+  G+      +Y D+QSAI+L +NQ++
Sbjct: 293 MIQSLVALYTTKSEYMAIAETTKESLWLTGLVKELGIQQGGVQLYFDNQSAIYLEKNQVY 352

Query: 777 HERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDL 935
           H RTKHI+VR+H + + VS G++ +KK+ T +N ADMLTKPV++ KFKHCL L
Sbjct: 353 HARTKHIDVRFHKISELVSSGELLLKKVHTSENAADMLTKPVTTEKFKHCLKL 405


>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
          Length = 297

 Score =  223 bits (569), Expect(2) = 7e-92
 Identities = 110/176 (62%), Positives = 139/176 (78%), Gaps = 1/176 (0%)
 Frame = +1

Query: 67  MKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVERFGMD-KAKHVSTPLAAHFKLSA 243
           MK LG A++ILGM+I RD+K + + L+Q+ Y+KKV+ERFGMD K K V TPLA HFKLS+
Sbjct: 1   MKGLGDAQRILGMKIRRDKKNESVWLTQKSYLKKVLERFGMDDKTKLVCTPLALHFKLSS 60

Query: 244 KLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHAVSVVSRYMANPGKEHWQAVKW 423
              P+++EE +YM+ +PYA  VGSL+YAMVCTRPDI+ AVS+VSRYM NPGK  W AVKW
Sbjct: 61  SSCPRSQEERDYMACVPYASVVGSLIYAMVCTRPDISQAVSMVSRYMHNPGKSQWLAVKW 120

Query: 424 ILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDKNRSITGYIFTLFGGVIS 591
           ILRYL GTVD+GL++ +N   Q   +GY DSD+AGDLDK RS +GY+FTL GG +S
Sbjct: 121 ILRYLYGTVDVGLLFKKNCGQQ--CVGYCDSDFAGDLDKQRSTSGYVFTLGGGSVS 174



 Score =  142 bits (358), Expect(2) = 7e-92
 Identities = 64/119 (53%), Positives = 91/119 (76%), Gaps = 1/119 (0%)
 Frame = +3

Query: 594 RVVLQSTVSLSTAEVEYMALSETAKETLWMKGLVRSFG-LDDQTSIYCDSQSAIHLTENQ 770
           R +LQST++LST E EY+A +E  KE +W+KGL+   G + +  +++CD+QSAI L +NQ
Sbjct: 176 RSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAIFLAKNQ 235

Query: 771 MFHERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGLL 947
            +H RTKHI+V+YH+VR+ +  GD+ +KKI TKDNP+DMLTK VS  KF+HCL L+ +L
Sbjct: 236 TYHARTKHIDVKYHYVREIIEGGDVLLKKIDTKDNPSDMLTKVVSEVKFQHCLKLIQIL 294


>emb|CAH66031.1| H0515C11.7 [Oryza sativa Indica Group]
          Length = 293

 Score =  228 bits (582), Expect(2) = 7e-92
 Identities = 111/175 (63%), Positives = 136/175 (77%)
 Frame = +1

Query: 67  MKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVERFGMDKAKHVSTPLAAHFKLSAK 246
           MKDLG AKKILGMEI RDR +  L LSQ+ YIKKV++RF M  AK VST +A HFKLSA 
Sbjct: 1   MKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPVSTSIAPHFKLSAL 60

Query: 247 LSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHAVSVVSRYMANPGKEHWQAVKWI 426
               T+E+ EYMSR+PY+ AVGSLMYAMVC+RPD++HA+S+VSRYM NPGKEHW+A+ WI
Sbjct: 61  QCASTDEDVEYMSRVPYSSAVGSLMYAMVCSRPDLSHAMSLVSRYMTNPGKEHWKAIHWI 120

Query: 427 LRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDKNRSITGYIFTLFGGVIS 591
            RYL+GT D  L +GR      G++GYVDSD+A DLDK RS+TGY+FT+    +S
Sbjct: 121 FRYLRGTTDACLKFGRT---DKGLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVS 172



 Score =  137 bits (345), Expect(2) = 7e-92
 Identities = 65/119 (54%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
 Frame = +3

Query: 594 RVVLQSTVSLSTAEVEYMALSETAKETLWMKGLVRSF-GLDDQTSIYCDSQSAIHLTENQ 770
           +  LQ  V+ ST E EYMA++E  KE++W+KGL     G+D   +++CDSQSAI LT++Q
Sbjct: 174 KATLQPIVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQ 233

Query: 771 MFHERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGLL 947
           MFHERTKHI+++YH+VRD V+ G + V KI+T DNPADM+TKPV  +KF+ C  LVG++
Sbjct: 234 MFHERTKHIDIKYHYVRDVVAQGKLKVCKISTHDNPADMMTKPVPVAKFELCSSLVGIV 292


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1175

 Score =  235 bits (600), Expect(2) = 5e-91
 Identities = 118/197 (59%), Positives = 148/197 (75%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            LIA  S  ++  LK QL+SEF+MKDL  AKKILGMEI RDR +  L LSQ+ YIKKV++R
Sbjct: 861  LIAAKSKEQITTLKKQLSSEFDMKDLDAAKKILGMEITRDRNSGWLFLSQQSYIKKVLQR 920

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            F M   K VST +A HFKLSA     T+E+ EYMSR+PY+  VGSLMYAMVC+R D++HA
Sbjct: 921  FNMHDTKPVSTHIAPHFKLSALQCASTDEDVEYMSRVPYSSVVGSLMYAMVCSRLDLSHA 980

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            +S+VSRYMANPGKEHW+A++WI RYL+ T +  L +GR      G+IGYVDSD+A DLDK
Sbjct: 981  MSLVSRYMANPGKEHWKAIQWIFRYLRDTANACLKFGRT---NKGLIGYVDSDFAADLDK 1037

Query: 541  NRSITGYIFTLFGGVIS 591
             RS+TGY+FT+    +S
Sbjct: 1038 RRSLTGYVFTIGSCAVS 1054



 Score =  127 bits (320), Expect(2) = 5e-91
 Identities = 61/119 (51%), Positives = 87/119 (73%), Gaps = 1/119 (0%)
 Frame = +3

Query: 594  RVVLQSTVSLSTAEVEYMALSETAKETLWMKGLVRSF-GLDDQTSIYCDSQSAIHLTENQ 770
            +  L+  V+ ST E EYMA++E  KE++W+KGL     G+    +++CDSQSAI LT++Q
Sbjct: 1056 KATLRHVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVYSCINLFCDSQSAICLTKDQ 1115

Query: 771  MFHERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGLL 947
            MFHERTKHI+++YH+VRD V+ G + V KI+T DNP DM+TK V  +KF+ C  LVG++
Sbjct: 1116 MFHERTKHIDIKYHYVRDVVAQGKLKVCKISTHDNPVDMMTKHVPVAKFELCSSLVGIV 1174


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  234 bits (597), Expect(2) = 7e-90
 Identities = 116/197 (58%), Positives = 147/197 (74%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            L+ G +   V +LKAQL  EF+MKDLG A KILGM+I+RDRK +K+ LSQ+ Y++KV+ R
Sbjct: 990  LVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRR 1049

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            F M   K +STPL  +FKLS+ +SP  E E   MSR+PYA AVGSLMYAM+CTRPDIA A
Sbjct: 1050 FNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQA 1109

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            V VVSR+MA+PGKEHW AVK I+RY+KGT  + + +G     +  + GYVDSD+AGD DK
Sbjct: 1110 VGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFG---GSELTVWGYVDSDFAGDHDK 1166

Query: 541  NRSITGYIFTLFGGVIS 591
             +S TGY+FTL GG +S
Sbjct: 1167 RKSTTGYVFTLAGGAVS 1183



 Score =  125 bits (313), Expect(2) = 7e-90
 Identities = 58/118 (49%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
 Frame = +3

Query: 603  LQSTVSLSTAEVEYMALSETAKETLWMKGLVRSFG-LDDQTSIYCDSQSAIHLTENQMFH 779
            LQ+ V+LST E EYMA ++  KE +WM+ L+   G   +Q ++YCDSQSA+H+  N  FH
Sbjct: 1188 LQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFH 1247

Query: 780  ERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGLLDS 953
             RTKHI V+YHFVR+ V  G + ++KI T DN AD++TKP+++ KF  C    GLL++
Sbjct: 1248 SRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINTDKFVWCRSSYGLLET 1305


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  234 bits (597), Expect(2) = 7e-90
 Identities = 116/197 (58%), Positives = 147/197 (74%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            L+ G +   V +LKAQL  EF+MKDLG A KILGM+I+RDRK +K+ LSQ+ Y++KV+ R
Sbjct: 990  LVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRR 1049

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            F M   K +STPL  +FKLS+ +SP  E E   MSR+PYA AVGSLMYAM+CTRPDIA A
Sbjct: 1050 FNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQA 1109

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            V VVSR+MA+PGKEHW AVK I+RY+KGT  + + +G     +  + GYVDSD+AGD DK
Sbjct: 1110 VGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFG---GSELTVRGYVDSDFAGDHDK 1166

Query: 541  NRSITGYIFTLFGGVIS 591
             +S TGY+FTL GG +S
Sbjct: 1167 RKSTTGYVFTLTGGAVS 1183



 Score =  125 bits (313), Expect(2) = 7e-90
 Identities = 58/118 (49%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
 Frame = +3

Query: 603  LQSTVSLSTAEVEYMALSETAKETLWMKGLVRSFG-LDDQTSIYCDSQSAIHLTENQMFH 779
            LQ+ V+LST E EYMA ++  KE +WM+ L+   G   +Q ++YCDSQSA+H+  N  FH
Sbjct: 1188 LQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFH 1247

Query: 780  ERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGLLDS 953
             RTKHI V+YHFVR+ V  G + ++KI T DN AD++TKP+++ KF  C    GLL++
Sbjct: 1248 SRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFVWCRSSYGLLET 1305


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  233 bits (594), Expect(2) = 1e-89
 Identities = 116/197 (58%), Positives = 146/197 (74%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            L+ G +   V +LKAQL  EF+MKDLG A KILGM+I+RDRK  K+ LSQ+ Y++KV+ R
Sbjct: 990  LVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYLRKVLRR 1049

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            F M   K +STPL  +FKLS+ +SP  E E   MSR+PYA AVGSLMYAM+CTRPDIA A
Sbjct: 1050 FNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQA 1109

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            V VVSR+MA+PGKEHW AVK I+RY+KGT  + + +G     +  + GYVDSD+AGD DK
Sbjct: 1110 VGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFG---GSELTVRGYVDSDFAGDHDK 1166

Query: 541  NRSITGYIFTLFGGVIS 591
             +S TGY+FTL GG +S
Sbjct: 1167 RKSTTGYVFTLAGGAVS 1183



 Score =  125 bits (313), Expect(2) = 1e-89
 Identities = 58/118 (49%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
 Frame = +3

Query: 603  LQSTVSLSTAEVEYMALSETAKETLWMKGLVRSFG-LDDQTSIYCDSQSAIHLTENQMFH 779
            LQ+ V+LST E EYMA ++  KE +WM+ L+   G   +Q ++YCDSQSA+H+  N  FH
Sbjct: 1188 LQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFH 1247

Query: 780  ERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGLLDS 953
             RTKHI V+YHFVR+ V  G + ++KI T DN AD++TKP+++ KF  C    GLL++
Sbjct: 1248 SRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFVWCRSSYGLLET 1305


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  234 bits (597), Expect(2) = 2e-89
 Identities = 116/197 (58%), Positives = 147/197 (74%)
 Frame = +1

Query: 1    LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
            L+ G +   V +LKAQL  EF+MKDLG A KILGM+I+RDRK +K+ LSQ+ Y++KV+ R
Sbjct: 990  LVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRR 1049

Query: 181  FGMDKAKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAHA 360
            F M   K +STPL  +FKLS+ +SP  E E   MSR+PYA AVGSLMYAM+CTRPDIA A
Sbjct: 1050 FNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQA 1109

Query: 361  VSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLDK 540
            V VVSR+MA+PGKEHW AVK I+RY+KGT  + + +G     +  + GYVDSD+AGD DK
Sbjct: 1110 VGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFG---GSELTVRGYVDSDFAGDHDK 1166

Query: 541  NRSITGYIFTLFGGVIS 591
             +S TGY+FTL GG +S
Sbjct: 1167 RKSTTGYVFTLAGGAVS 1183



 Score =  123 bits (308), Expect(2) = 2e-89
 Identities = 58/118 (49%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
 Frame = +3

Query: 603  LQSTVSLSTAEVEYMALSETAKETLWMKGLVRSFG-LDDQTSIYCDSQSAIHLTENQMFH 779
            LQ+ V+LST E EYMA ++  KE +WM+ L+   G   +Q ++YCDSQSA+H+  N  FH
Sbjct: 1188 LQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFH 1247

Query: 780  ERTKHINVRYHFVRDCVSCGDMAVKKITTKDNPADMLTKPVSSSKFKHCLDLVGLLDS 953
             RTKHI V+YHFVR+ V  G + ++KI T DN AD +TK +++ KF  C  L GLL++
Sbjct: 1248 SRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADAMTKSINTDKFIWCRSLYGLLET 1305


>gb|ABG22123.1| polyprotein [Prunus avium]
          Length = 276

 Score =  268 bits (685), Expect(2) = 4e-89
 Identities = 131/198 (66%), Positives = 162/198 (81%), Gaps = 1/198 (0%)
 Frame = +1

Query: 1   LIAGSSIVEVNKLKAQLNSEFEMKDLGTAKKILGMEIYRDRKAKKLHLSQRQYIKKVVER 180
           LI   S VE+ +LK QL++EFEMKDLG A+KILGMEI RDR   K+ L Q+QY+KKV++R
Sbjct: 6   LIVCKSKVEIERLKTQLSNEFEMKDLGEARKILGMEIERDRAKGKISLCQKQYLKKVLQR 65

Query: 181 FGMDK-AKHVSTPLAAHFKLSAKLSPQTEEEEEYMSRIPYARAVGSLMYAMVCTRPDIAH 357
           FGM++ +K VSTPLA HFKLSA +SP T+EE  YM++IPYA AVGSLMYAMVCTRPDI+ 
Sbjct: 66  FGMNENSKPVSTPLAPHFKLSASMSPNTDEESHYMAQIPYASAVGSLMYAMVCTRPDISQ 125

Query: 358 AVSVVSRYMANPGKEHWQAVKWILRYLKGTVDLGLIYGRNFSDQDGIIGYVDSDYAGDLD 537
           AVS+VSRYM NPGK HWQAVKWILRY+ GTVD+GL++ ++      ++GYVDSDYAGDLD
Sbjct: 126 AVSIVSRYMHNPGKGHWQAVKWILRYILGTVDVGLLFQQDKVSGQCVVGYVDSDYAGDLD 185

Query: 538 KNRSITGYIFTLFGGVIS 591
           K RS TG++FT+ GG +S
Sbjct: 186 KRRSTTGFVFTIAGGPVS 203



 Score = 88.6 bits (218), Expect(2) = 4e-89
 Identities = 41/72 (56%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
 Frame = +3

Query: 594 RVVLQSTVSLSTAEVEYMALSETAKETLWMKGLVRSFGL-DDQTSIYCDSQSAIHLTENQ 770
           R +LQSTV+LST E EYMA++E  KE +W++GL+   G+  D   +YCDSQSAI+L +NQ
Sbjct: 205 RSILQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDLGVQQDHVDVYCDSQSAIYLAKNQ 264

Query: 771 MFHERTKHINVR 806
           + H RTKHI+VR
Sbjct: 265 VHHARTKHIDVR 276