BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00001811
         (1130 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331171.1| predicted protein [Populus trichocarpa] gi|5...   355   2e-95
ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, I...   353   5e-95
gb|EOY30723.1| Eukaryotic rpb5 RNA polymerase subunit family pro...   352   2e-94
ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citr...   350   5e-94
ref|XP_004239999.1| PREDICTED: DNA-directed RNA polymerases I, I...   347   4e-93
ref|XP_006355533.1| PREDICTED: DNA-directed RNA polymerases II a...   343   6e-92
ref|XP_006353289.1| PREDICTED: DNA-directed RNA polymerases II a...   343   1e-91
ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, I...   340   6e-91
gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subun...   337   7e-90
ref|XP_006406183.1| hypothetical protein EUTSA_v10021534mg [Eutr...   336   9e-90
ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Caps...   336   9e-90
ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrat...   335   2e-89
gb|EMJ19617.1| hypothetical protein PRUPE_ppa011542mg [Prunus pe...   335   3e-89
ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, I...   335   3e-89
ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis ...   335   3e-89
ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III ...   332   2e-88
ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycin...   332   2e-88
ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycin...   330   5e-88
ref|XP_004511328.1| PREDICTED: DNA-directed RNA polymerases I, I...   328   2e-87
gb|AFK41303.1| unknown [Medicago truncatula]                          328   3e-87

>ref|XP_002331171.1| predicted protein [Populus trichocarpa]
           gi|566176743|ref|XP_006381734.1| DNA-directed RNA
           polymerase family protein [Populus trichocarpa]
           gi|550336487|gb|ERP59531.1| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 206

 Score =  355 bits (910), Expect = 2e-95
 Identities = 174/206 (84%), Positives = 191/206 (92%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           MTL++EEI RL RIRK V+QMLKDRGYFV D EI+M + +F  KYG NMKREDLVINKTK
Sbjct: 1   MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           R+DSSDQIYVFFP+E KVGVK MKTYTNRMK+ENVFRAILVVQQNLTPFARTC+NEISTK
Sbjct: 61  RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 525 FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYG 704
           FHLEVFQEAEL+VNIK HVLVPEHQ+LS EEKKTLLERYTVKETQLPRIQ+TDPIARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQITDPIARYYG 180

Query: 705 LKRGQVVRISRPSETAGRYITYRFVV 782
           LKRGQVV+I RPSETAGRY+TYR+V+
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVI 206


>ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 isoform 1 [Vitis vinifera]
           gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1 isoform 2
           [Vitis vinifera]
          Length = 206

 Score =  353 bits (907), Expect = 5e-95
 Identities = 175/206 (84%), Positives = 192/206 (93%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           M+ S+EEISRLFRIRK V+QMLKDRGYFV D EI M K +F+ K+GENMKREDLVINK K
Sbjct: 1   MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           R+DSSDQIYVFFP+E KVGVK MKTYTNRMK+ENVFRAILVVQQNLTPFARTC+NEISTK
Sbjct: 61  RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 525 FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYG 704
           FHLEVFQEAEL+VNIK HVLVPEHQ+L+ EEKKTLLERYTVKETQLPRIQV+DPIARY+G
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVSDPIARYFG 180

Query: 705 LKRGQVVRISRPSETAGRYITYRFVV 782
           LKRGQVV+I RPSETAGRYITYR+VV
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYVV 206


>gb|EOY30723.1| Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
           [Theobroma cacao]
          Length = 206

 Score =  352 bits (903), Expect = 2e-94
 Identities = 171/206 (83%), Positives = 191/206 (92%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           M LSD+EI RLFRIRK V+QMLKDRGYFV D EI M K +F+ KYGENMKREDLVINKTK
Sbjct: 1   MVLSDDEIKRLFRIRKTVMQMLKDRGYFVGDFEITMTKAQFISKYGENMKREDLVINKTK 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           R+D+SDQIYVFFPDE KVGVK MKTYTNRMK+ENVFRA+LVVQQNLTPFARTC+NEIS+K
Sbjct: 61  RNDNSDQIYVFFPDEAKVGVKTMKTYTNRMKSENVFRAVLVVQQNLTPFARTCINEISSK 120

Query: 525 FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYG 704
           FHLEVFQE+EL+VN+K H LVPEHQ+L+ EEKKTLL+RYTVKETQLPRIQV+DPIARYYG
Sbjct: 121 FHLEVFQESELLVNVKEHSLVPEHQVLTNEEKKTLLQRYTVKETQLPRIQVSDPIARYYG 180

Query: 705 LKRGQVVRISRPSETAGRYITYRFVV 782
           LKRGQVV+I RPSETAGRY+TYR+VV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206


>ref|XP_006451215.1| hypothetical protein CICLE_v10009504mg [Citrus clementina]
           gi|567918420|ref|XP_006451216.1| hypothetical protein
           CICLE_v10009504mg [Citrus clementina]
           gi|568843556|ref|XP_006475670.1| PREDICTED: DNA-directed
           RNA polymerases II and IV subunit 5A-like isoform X1
           [Citrus sinensis] gi|568843558|ref|XP_006475671.1|
           PREDICTED: DNA-directed RNA polymerases II and IV
           subunit 5A-like isoform X2 [Citrus sinensis]
           gi|568843560|ref|XP_006475672.1| PREDICTED: DNA-directed
           RNA polymerases II and IV subunit 5A-like isoform X3
           [Citrus sinensis] gi|557554441|gb|ESR64455.1|
           hypothetical protein CICLE_v10009504mg [Citrus
           clementina] gi|557554442|gb|ESR64456.1| hypothetical
           protein CICLE_v10009504mg [Citrus clementina]
          Length = 206

 Score =  350 bits (899), Expect = 5e-94
 Identities = 173/206 (83%), Positives = 189/206 (91%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           MTLSDEEI RLFRIR+ V+QML+DRGYFV D EI M K +F+ K+GENMKREDLVINK  
Sbjct: 1   MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           R+DSSDQIYVFFPDE KVGVK MKTYTNRMK+ENVFRAILVVQQNLTPFARTC+ EIS K
Sbjct: 61  RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120

Query: 525 FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYG 704
           FHLEVFQEAEL+VNIK HVLVPEHQ+L+ EEKKTLL+RYTVKETQLPRIQVTDPIARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLKRYTVKETQLPRIQVTDPIARYYG 180

Query: 705 LKRGQVVRISRPSETAGRYITYRFVV 782
           LKRGQVV+I RPSETAGRY+TYR+VV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206


>ref|XP_004239999.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like isoform 1 [Solanum lycopersicum]
           gi|460388693|ref|XP_004240000.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit RPABC1-like
           isoform 2 [Solanum lycopersicum]
          Length = 206

 Score =  347 bits (891), Expect = 4e-93
 Identities = 168/206 (81%), Positives = 190/206 (92%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           M LS+EE+S+LFR+RK +++ML DRGY V D EI M K +FLQKYGENMKREDLVI K K
Sbjct: 1   MALSEEELSKLFRVRKTLMEMLSDRGYLVGDFEINMSKHQFLQKYGENMKREDLVIQKAK 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           R++SSDQIYVFFP+E KVGVK MKTYT RMK E+VF+AIL+VQQNLTPFARTC++EISTK
Sbjct: 61  RNNSSDQIYVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISTK 120

Query: 525 FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYG 704
           FHLEVFQEAE++VNIKNHVL+PEHQLLSPEEKKTLLERYTVKETQLPRIQ+TDPIARYYG
Sbjct: 121 FHLEVFQEAEMLVNIKNHVLIPEHQLLSPEEKKTLLERYTVKETQLPRIQITDPIARYYG 180

Query: 705 LKRGQVVRISRPSETAGRYITYRFVV 782
           LKRGQVV+I RPSETAGRYITYR+VV
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYVV 206


>ref|XP_006355533.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Solanum tuberosum]
          Length = 206

 Score =  343 bits (881), Expect = 6e-92
 Identities = 166/206 (80%), Positives = 189/206 (91%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           M LS+EE+SRLFR+RK +++ML DRGY V D EI M K +FLQKYGENMKREDLV+ K K
Sbjct: 1   MALSEEELSRLFRVRKTLMEMLSDRGYLVGDFEINMSKHQFLQKYGENMKREDLVLQKAK 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           R++SSDQIYVFFP+E KVGVK MKTYT RMK E+VF+AIL+VQQNLTPFARTC++EISTK
Sbjct: 61  RNNSSDQIYVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISTK 120

Query: 525 FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYG 704
           FHLEVFQEAE++VNIKNHVL+PEH LLSPEEKK+LLERYTVKETQLPRIQ+TDPIARYYG
Sbjct: 121 FHLEVFQEAEMLVNIKNHVLIPEHLLLSPEEKKSLLERYTVKETQLPRIQITDPIARYYG 180

Query: 705 LKRGQVVRISRPSETAGRYITYRFVV 782
           LKRGQVV+I RPSETAGRYITYR+VV
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYVV 206


>ref|XP_006353289.1| PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like
           [Solanum tuberosum]
          Length = 206

 Score =  343 bits (879), Expect = 1e-91
 Identities = 165/206 (80%), Positives = 189/206 (91%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           MTLS+EE+SRLFR+RK +++ML DRGY V D EI M K EFLQKYGENMKREDLV+ K K
Sbjct: 1   MTLSEEELSRLFRVRKTLMEMLSDRGYLVGDFEINMSKYEFLQKYGENMKREDLVLQKAK 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           R++SSDQIYVFFP+E KVGVK MKTYT RMK E+VF+AIL+VQQNLTPFARTC++EIS K
Sbjct: 61  RNNSSDQIYVFFPEEPKVGVKTMKTYTERMKKEDVFQAILIVQQNLTPFARTCISEISIK 120

Query: 525 FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYG 704
           FHLEVFQEAE++VNIKNHVL+P+HQ L+PEEKKTLLERYTVKETQLPRIQ+TDPIARYYG
Sbjct: 121 FHLEVFQEAEMLVNIKNHVLIPKHQTLTPEEKKTLLERYTVKETQLPRIQITDPIARYYG 180

Query: 705 LKRGQVVRISRPSETAGRYITYRFVV 782
           LKRGQVV+I RPSETAGRY+TYR+VV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206


>ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
          Length = 207

 Score =  340 bits (872), Expect = 6e-91
 Identities = 167/207 (80%), Positives = 191/207 (92%), Gaps = 1/207 (0%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           M LS+EEI+RLFRIRK V QML+DRGYFV D EI+M + +F QKYGENMKRED+VINK+K
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           R+DSSDQIYVFFP+E KVG+K +KTYT RMK+ENVFRAILVVQQNLTPFAR C++E ++K
Sbjct: 61  RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120

Query: 525 -FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYY 701
            FHLEVFQEAEL+VNIK+HVLVPEHQLL+ EEKKTLLERYTVKETQLPRIQVTDP+ARYY
Sbjct: 121 SFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARYY 180

Query: 702 GLKRGQVVRISRPSETAGRYITYRFVV 782
           GLKRGQVV+I RPSETAGRY+TYR+VV
Sbjct: 181 GLKRGQVVKIIRPSETAGRYVTYRYVV 207


>gb|EXC15864.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Morus
           notabilis]
          Length = 253

 Score =  337 bits (863), Expect = 7e-90
 Identities = 164/205 (80%), Positives = 186/205 (90%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           M LS++EI+RLFRIR+ V+QML+DR Y V D E+ M K +F  KYGENMKREDL+INK++
Sbjct: 1   MVLSEDEITRLFRIRRTVMQMLRDRNYLVGDFELNMTKEQFRNKYGENMKREDLIINKSR 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           R+DS DQIYVFFP+E KVGVK MKTY NRMK+ENV RA+LVVQQNLTPFARTC++EISTK
Sbjct: 61  RNDSPDQIYVFFPEEQKVGVKTMKTYINRMKSENVLRAVLVVQQNLTPFARTCISEISTK 120

Query: 525 FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYG 704
           FHLEVFQEAEL+VNIK HVLVPEHQ+L+ EEKKTLLERYTVKETQLPRIQVTDPIARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180

Query: 705 LKRGQVVRISRPSETAGRYITYRFV 779
           LKRGQVV+I RPSETAGRYITYR+V
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYV 205


>ref|XP_006406183.1| hypothetical protein EUTSA_v10021534mg [Eutrema salsugineum]
           gi|557107329|gb|ESQ47636.1| hypothetical protein
           EUTSA_v10021534mg [Eutrema salsugineum]
          Length = 206

 Score =  336 bits (862), Expect = 9e-90
 Identities = 161/206 (78%), Positives = 190/206 (92%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           MTL++EEI RL+RI+K ++QMLKDRGYF+AD EI M   +F++K+G+NMKREDLV  K K
Sbjct: 1   MTLTEEEIKRLYRIQKTLMQMLKDRGYFIADSEITMTLGQFIRKHGDNMKREDLVTLKAK 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           R+D++DQ+Y+FFPDE KVGVK MK YTNRMK+ENVFRAILVVQQNLTPFARTC++EIS+K
Sbjct: 61  RNDNNDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 525 FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYG 704
           FHLEVFQEAE++VNIK HVLVPEHQ+L+ EEKKTLLERYTVKETQLPRIQVTDPIARY+G
Sbjct: 121 FHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFG 180

Query: 705 LKRGQVVRISRPSETAGRYITYRFVV 782
           LKRGQVV+I RPSETAGRY+TYR+VV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206


>ref|XP_006298572.1| hypothetical protein CARUB_v10014656mg [Capsella rubella]
           gi|482567281|gb|EOA31470.1| hypothetical protein
           CARUB_v10014656mg [Capsella rubella]
          Length = 205

 Score =  336 bits (862), Expect = 9e-90
 Identities = 160/204 (78%), Positives = 189/204 (92%)
 Frame = +3

Query: 171 LSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTKRS 350
           L++EEI RL+RI K ++QMLKDRGYF+AD EI + K++F++KYG+NMKREDLV  K KR+
Sbjct: 2   LTEEEIKRLYRIHKTLMQMLKDRGYFIADSEITITKQQFIRKYGDNMKREDLVTLKAKRN 61

Query: 351 DSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTKFH 530
           D+SDQ+Y+FFPDE KVGVK MK YTNRMK+ENV+RAILVVQQNLTPFARTC++EIS+KFH
Sbjct: 62  DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKFH 121

Query: 531 LEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYGLK 710
           LEVFQEAE++VNIK HVLVPEHQ+L+ EEKKTLLERYTVKETQLPRIQVTDPIARY+GLK
Sbjct: 122 LEVFQEAEMLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQVTDPIARYFGLK 181

Query: 711 RGQVVRISRPSETAGRYITYRFVV 782
           RGQVV+I RPSETAGRY+TYR+VV
Sbjct: 182 RGQVVKIIRPSETAGRYVTYRYVV 205


>ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
           gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 205

 Score =  335 bits (860), Expect = 2e-89
 Identities = 159/204 (77%), Positives = 190/204 (93%)
 Frame = +3

Query: 171 LSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTKRS 350
           L++EEI RL+RI+K ++QMLKDRGYF+AD E+ M K++F++K+G+NMKREDLV  K KR+
Sbjct: 2   LTEEEIKRLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKVKRN 61

Query: 351 DSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTKFH 530
           D+SDQ+Y+FFPDE KVGVK MK YTNRMK+ENV+RAILVVQQNLTPFARTC++EIS+KFH
Sbjct: 62  DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKFH 121

Query: 531 LEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYGLK 710
           LEVFQEAE++VNIK HVLVPEHQ+L+ EEKKTLLERYTVKETQLPRIQVTDPIARY+GLK
Sbjct: 122 LEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLK 181

Query: 711 RGQVVRISRPSETAGRYITYRFVV 782
           RGQVV+I RPSETAGRY+TYR+VV
Sbjct: 182 RGQVVKIIRPSETAGRYVTYRYVV 205


>gb|EMJ19617.1| hypothetical protein PRUPE_ppa011542mg [Prunus persica]
          Length = 206

 Score =  335 bits (858), Expect = 3e-89
 Identities = 163/206 (79%), Positives = 184/206 (89%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           M   +EEI+RL+R+RK V+QMLKDR Y V D EI M + +F  KYGENMKREDL INKTK
Sbjct: 1   MVYPEEEITRLYRVRKTVMQMLKDRNYLVGDFEINMTREQFKSKYGENMKREDLTINKTK 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           RSDSSDQIYVFFP+E KVGVK MKTYTNRMK+ENV RA+LV QQNLTPFA+TC++EIS+K
Sbjct: 61  RSDSSDQIYVFFPEEPKVGVKTMKTYTNRMKSENVLRAVLVTQQNLTPFAKTCISEISSK 120

Query: 525 FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYG 704
           FHLEVFQEAEL+VNIK HVLVPEH +L+ EEKKTLLERYTVKETQLPRIQVTDPIA+YYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHLVLTTEEKKTLLERYTVKETQLPRIQVTDPIAKYYG 180

Query: 705 LKRGQVVRISRPSETAGRYITYRFVV 782
           LKRGQVV+I RPSETAGRYITYR+V+
Sbjct: 181 LKRGQVVKIIRPSETAGRYITYRYVI 206


>ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cucumis sativus]
          Length = 208

 Score =  335 bits (858), Expect = 3e-89
 Identities = 165/208 (79%), Positives = 191/208 (91%), Gaps = 2/208 (0%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           M LS+EEI+RLFRIRK V QML+DRGYFV D EI+M + +F QKYGENMKRED+VINK+K
Sbjct: 1   MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60

Query: 345 RSDSSDQIYV-FFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEIST 521
           R+DSSDQ+Y+ FFP+E KVG+K +KTYT RMK+ENVFRAILVVQQNLTPFAR C++E ++
Sbjct: 61  RNDSSDQVYICFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATS 120

Query: 522 K-FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARY 698
           K FHLEVFQEAEL+VNIK+HVLVPEHQLL+ EEKKTLLERYTVKETQLPRIQVTDP+ARY
Sbjct: 121 KSFHLEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQLPRIQVTDPVARY 180

Query: 699 YGLKRGQVVRISRPSETAGRYITYRFVV 782
           YGLKRGQVV+I RPSETAGRY+TYR+VV
Sbjct: 181 YGLKRGQVVKIIRPSETAGRYVTYRYVV 208


>ref|NP_188871.1| DNA-directed RNA polymerase NRPB5 [Arabidopsis thaliana]
           gi|75275037|sp|O81098.1|RPB5A_ARATH RecName:
           Full=DNA-directed RNA polymerases II and IV subunit 5A;
           Short=RPB5a; AltName: Full=DNA-directed RNA polymerase
           II subunit E; AltName: Full=RNA polymerase I, II and III
           24.3 kDa subunit; Short=AtRPB24.3
           gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5
           [Arabidopsis thaliana] gi|3372233|gb|AAC28253.1| RNA
           polymerase I, II and III 24.3 kDa subunit [Arabidopsis
           thaliana] gi|9293866|dbj|BAB01769.1| RNA polymerase I,
           II and III 24.3 kDa subunit [Arabidopsis thaliana]
           gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III
           24.3 kDa subunit [Arabidopsis thaliana]
           gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase
           NRPB5 [Arabidopsis thaliana]
          Length = 205

 Score =  335 bits (858), Expect = 3e-89
 Identities = 158/204 (77%), Positives = 190/204 (93%)
 Frame = +3

Query: 171 LSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTKRS 350
           L++EE+ RL+RI+K ++QML+DRGYF+AD E+ M K++F++K+G+NMKREDLV  K KR+
Sbjct: 2   LTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRN 61

Query: 351 DSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTKFH 530
           D+SDQ+Y+FFPDE KVGVK MK YTNRMK+ENVFRAILVVQQNLTPFARTC++EIS+KFH
Sbjct: 62  DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFH 121

Query: 531 LEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYGLK 710
           LEVFQEAE++VNIK HVLVPEHQ+L+ EEKKTLLERYTVKETQLPRIQVTDPIARY+GLK
Sbjct: 122 LEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLK 181

Query: 711 RGQVVRISRPSETAGRYITYRFVV 782
           RGQVV+I RPSETAGRY+TYR+VV
Sbjct: 182 RGQVVKIIRPSETAGRYVTYRYVV 205


>ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
           [Medicago truncatula] gi|355511987|gb|AES93610.1|
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC1 [Medicago truncatula]
          Length = 410

 Score =  332 bits (851), Expect = 2e-88
 Identities = 162/209 (77%), Positives = 184/209 (88%)
 Frame = +3

Query: 156 KEKMTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVIN 335
           K+ M  S+EEI+RL+RIRK V+QMLKDR Y V D E+ M K +F  KYGENMKREDLVIN
Sbjct: 202 KKTMVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVIN 261

Query: 336 KTKRSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEI 515
           KTK+   SDQIYVFFP+E KVGVK MKTYTNRM +ENV+RAILV Q +LTPFA+TCV+EI
Sbjct: 262 KTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEI 321

Query: 516 STKFHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIAR 695
           ++KFHLEVFQEAEL+VNIK HVLVPEHQ+L+  EKKTLLERYTVKETQLPRIQVTDP+AR
Sbjct: 322 ASKFHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVAR 381

Query: 696 YYGLKRGQVVRISRPSETAGRYITYRFVV 782
           YYGLKRGQVV+I RPSETAGRY+TYRFVV
Sbjct: 382 YYGLKRGQVVKIIRPSETAGRYVTYRFVV 410


>ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
           gi|255625665|gb|ACU13177.1| unknown [Glycine max]
          Length = 206

 Score =  332 bits (850), Expect = 2e-88
 Identities = 162/206 (78%), Positives = 183/206 (88%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           M LS+EE+ RL+RIRK V+QML+DRG+ V D EI M K EF  KYGE+MKREDLVINK+K
Sbjct: 1   MVLSEEEMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           + +S DQIYVFFPDE KVGVK MKTYTNRM +ENV+RAILV Q NLTPFARTC++EIS+K
Sbjct: 61  KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120

Query: 525 FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYG 704
           FHLEVFQEAEL+VNIK H LVPEHQ+L+  EKKTLLERYTVKETQLPRIQVTDP+ARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 705 LKRGQVVRISRPSETAGRYITYRFVV 782
           LKRGQVV+I RPSETAGRY+TYRFVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRFVV 206


>ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycine max]
           gi|255627545|gb|ACU14117.1| unknown [Glycine max]
          Length = 206

 Score =  330 bits (847), Expect = 5e-88
 Identities = 162/206 (78%), Positives = 182/206 (88%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           M LS+EEI RL+RIRK V+QML+DR + V D EI M K EF  KYGE+MKREDLVINK+K
Sbjct: 1   MVLSEEEIGRLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           + +S DQIYVFFPDE KVGVK MKTYTNRM +ENV+RAILV Q NLTPFARTC++EIS+K
Sbjct: 61  KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120

Query: 525 FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYG 704
           FHLEVFQEAEL+VNIK H LVPEHQ+L+  EKKTLLERYTVKETQLPRIQVTDP+ARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 705 LKRGQVVRISRPSETAGRYITYRFVV 782
           LKRGQVV+I RPSETAGRY+TYRFVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRFVV 206


>ref|XP_004511328.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           RPABC1-like [Cicer arietinum]
          Length = 206

 Score =  328 bits (841), Expect = 2e-87
 Identities = 160/206 (77%), Positives = 181/206 (87%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           M   +EEI+RL+RIRK V+ ML+DR Y V D E+ M K EF +KYGENMKREDLVINKTK
Sbjct: 1   MVFPEEEITRLYRIRKTVMVMLRDRNYLVGDFEVNMSKHEFKEKYGENMKREDLVINKTK 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           +   SDQIYVFFP+EVKVGVK MKTYTNRM +ENV+RAILV Q +LTPFARTC+ E+S+K
Sbjct: 61  KDKPSDQIYVFFPEEVKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFARTCIAEVSSK 120

Query: 525 FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYG 704
           FHLEVFQEAEL+VNIK HVLVPEHQ+L+  EKKTLLERYTVKETQLPRIQVTDP+ARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTETEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 705 LKRGQVVRISRPSETAGRYITYRFVV 782
           LKRGQVV+I RPSETAGRY+TYRFVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRFVV 206


>gb|AFK41303.1| unknown [Medicago truncatula]
          Length = 206

 Score =  328 bits (840), Expect = 3e-87
 Identities = 160/206 (77%), Positives = 181/206 (87%)
 Frame = +3

Query: 165 MTLSDEEISRLFRIRKNVLQMLKDRGYFVADKEIEMEKREFLQKYGENMKREDLVINKTK 344
           M  S+EEI+RL+RIRK V+QMLKDR Y V D E+ M K +F  KYGENMKREDLVINKTK
Sbjct: 1   MVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTK 60

Query: 345 RSDSSDQIYVFFPDEVKVGVKQMKTYTNRMKTENVFRAILVVQQNLTPFARTCVNEISTK 524
           +   SDQIYVFFP+E KVGVK MKTYTNRM +ENV+RAILV Q +LTPFA+TCV+EI++K
Sbjct: 61  KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASK 120

Query: 525 FHLEVFQEAELMVNIKNHVLVPEHQLLSPEEKKTLLERYTVKETQLPRIQVTDPIARYYG 704
           FHLEVFQEAEL+VNIK HVLVPEHQ+L+  EKKTLLERYTVKETQLPRIQVTDP+ARYYG
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 705 LKRGQVVRISRPSETAGRYITYRFVV 782
           LKRGQVV+I RPSETAGRY+TYR VV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRLVV 206