BLASTX nr result
ID: Rauwolfia21_contig00001542
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00001542
(1433 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theob... 538 e-150
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta... 536 e-150
ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citr... 533 e-149
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera] 533 e-149
ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II su... 532 e-148
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su... 531 e-148
ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, ... 531 e-148
ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II su... 528 e-147
gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus pe... 525 e-146
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, ... 520 e-145
gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus... 519 e-144
ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi... 518 e-144
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, ... 515 e-143
ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polype... 514 e-143
ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Caps... 514 e-143
ref|XP_006409557.1| hypothetical protein EUTSA_v10022739mg [Eutr... 514 e-143
ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II su... 513 e-143
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [... 513 e-143
ref|XP_006393120.1| hypothetical protein EUTSA_v10011661mg [Eutr... 510 e-142
gb|AAM65319.1| DNA-directed RNA polymerase II, third largest sub... 510 e-142
>gb|EOX98333.1| DNA-directed RNA polymerase family protein [Theobroma cacao]
Length = 318
Score = 538 bits (1386), Expect = e-150
Identities = 271/318 (85%), Positives = 295/318 (92%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
M+G SYQRFP+VKIRELKDD+ KFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFIAHRLGLIPLTS RAMSMRFSRDCDACDGDGQCE+CSVEF+LRAKC+ DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDQTLDV 120
Query: 979 TSRDLISSDPSVVLVDFSDSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKWS 800
TS+DL SSD +VV VDF+DS+G+D+SE RGIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121 TSKDLYSSDHTVVPVDFTDSAGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180
Query: 799 PAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTYD 620
PAATVTFMYEPEI INE+MME L+LE+K+S VESSPT+VFDID T + VVVD EAYTYD
Sbjct: 181 PAATVTFMYEPEIHINEDMMETLTLEEKQSFVESSPTRVFDIDPNTQQVVVVDPEAYTYD 240
Query: 619 DEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSDD 440
DEVLKK EAM PGL+EI+ KED FIFTVESTG IKASQLVLNAI++LKQKLDAVRLS+D
Sbjct: 241 DEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSED 300
Query: 439 TVEADDQFGELGAHMRGG 386
TVEADDQFGELGAHMRGG
Sbjct: 301 TVEADDQFGELGAHMRGG 318
>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 318
Score = 536 bits (1382), Expect = e-150
Identities = 270/318 (84%), Positives = 293/318 (92%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
M+G SYQRFPR+KIRELKDD+ KFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1 MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFIAHRLGLIPLTS RAMSMRFSRDCDACDGDGQC+YCSVEF+LRAKCI DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120
Query: 979 TSRDLISSDPSVVLVDFSDSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKWS 800
TS+DL SSD +VV VDFSDSSG+D+SE RGIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180
Query: 799 PAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTYD 620
PAATVTFMYEP+I INE++ME LSLE+K+S VESSPTKVFDID T + VVVD EAYTYD
Sbjct: 181 PAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYD 240
Query: 619 DEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSDD 440
+EV+KK E+M PGL+ I KED FIFTVESTG IKASQLVLNAI+ILKQKLDAVRLS+D
Sbjct: 241 EEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSED 300
Query: 439 TVEADDQFGELGAHMRGG 386
TVEADDQFGELGAHMRGG
Sbjct: 301 TVEADDQFGELGAHMRGG 318
>ref|XP_006422955.1| hypothetical protein CICLE_v10028849mg [Citrus clementina]
gi|568867393|ref|XP_006487022.1| PREDICTED: DNA-directed
RNA polymerases II, IV and V subunit 3-like [Citrus
sinensis] gi|557524889|gb|ESR36195.1| hypothetical
protein CICLE_v10028849mg [Citrus clementina]
Length = 319
Score = 533 bits (1373), Expect = e-149
Identities = 271/319 (84%), Positives = 294/319 (92%), Gaps = 1/319 (0%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
MDG SYQRFP+VKIRELKDD+ KFELRDTDAS+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MDGASYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFIAHRLGLIPLTS RAMSMRFSRDCDACDGDGQCE+CSVEF+LRAKC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 979 TSRDLISSDPSVVLVDFSDSSGFDNSEN-RGIIIVKLRRGQELNLRAIARKGIGKDHAKW 803
TS+DL SSD SVV VDF D +G+D+++ RGIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLYSSDHSVVPVDFVDPAGYDSTDQQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
Query: 802 SPAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTY 623
SPAATVTFMYEPEI INE++ME LSLE+K+S VESSPTKVFDID TG+ VVDAEAYTY
Sbjct: 181 SPAATVTFMYEPEIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTGQVYVVDAEAYTY 240
Query: 622 DDEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSD 443
DDEV+KK EAM PGL+EI+ KED FIFTVESTG IKASQLVLNAI++LKQKLDAVRLS+
Sbjct: 241 DDEVIKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEVLKQKLDAVRLSE 300
Query: 442 DTVEADDQFGELGAHMRGG 386
DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319
>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
Length = 318
Score = 533 bits (1372), Expect = e-149
Identities = 266/318 (83%), Positives = 295/318 (92%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
M+G SYQRFP++KIRE+KDD+ KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFIAHRLGLIPLTS RAMSMRFSRDCDACDGDGQCE+CSVEF+LRAKC+ D+TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
Query: 979 TSRDLISSDPSVVLVDFSDSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKWS 800
TS+DLISSD +VV VDFSDSSG+D+++ +GIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121 TSKDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180
Query: 799 PAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTYD 620
PAATVTFMYEPEI INE++ME L+LE+K S VESSPTKVFDID + + VV DAEAYTYD
Sbjct: 181 PAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYD 240
Query: 619 DEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSDD 440
DEVLKK EAM PGL+EI+ KED FIFTVESTG IKASQLVLNAID+LKQKLDAVRLS+D
Sbjct: 241 DEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSED 300
Query: 439 TVEADDQFGELGAHMRGG 386
TVEADDQFGELGAHMRGG
Sbjct: 301 TVEADDQFGELGAHMRGG 318
>ref|XP_004238992.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Solanum lycopersicum]
Length = 319
Score = 532 bits (1371), Expect = e-148
Identities = 264/319 (82%), Positives = 294/319 (92%), Gaps = 1/319 (0%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
M+G SYQRFP++K+RE+KDDF+KFELRDTDASIANALRR+MIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKVREVKDDFMKFELRDTDASIANALRRIMIAEVPTIAIDLVEIEVNSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFI+HRLGL+PLTS RAMSMRFSRDCDACDGDGQCEYCSVEFYLR KC++DQTLDV
Sbjct: 61 VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV 120
Query: 979 TSRDLISSDPSVVLVDFSD-SSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKW 803
TS+DL+SSD +VV VD+SD SS FDN+ N+GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLLSSDHTVVPVDYSDASSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
Query: 802 SPAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTY 623
SPAATVTFMYEPEI INE+MME L+LE+K +VESSPTKVF ID + + +VVD EAYTY
Sbjct: 181 SPAATVTFMYEPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTY 240
Query: 622 DDEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSD 443
DDEVLKK EAM PG++EIH KED FIFTVE+TG +KASQLVLNAI++LKQKLDAVRLSD
Sbjct: 241 DDEVLKKAEAMGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRLSD 300
Query: 442 DTVEADDQFGELGAHMRGG 386
DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319
>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
vinifera]
Length = 318
Score = 531 bits (1369), Expect = e-148
Identities = 265/318 (83%), Positives = 295/318 (92%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
M+G SYQRFP++KIRE+KDD+ KFELR+TDAS+ANALRRVMIAEVPT+AIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFIAHRLGLIPLTS RAM+MRFSRDCDACDGDGQCE+CSVEF+LRAKC+ D+TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
Query: 979 TSRDLISSDPSVVLVDFSDSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKWS 800
TS+DLISSD +VV VDFSDSSG+D+++ +GIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121 TSKDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180
Query: 799 PAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTYD 620
PAATVTFMYEPEI INE++ME L+LE+K S VESSPTKVFDID + + VV DAEAYTYD
Sbjct: 181 PAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYD 240
Query: 619 DEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSDD 440
DEVLKK EAM PGL+EI+ KED FIFTVESTG IKASQLVLNAID+LKQKLDAVRLS+D
Sbjct: 241 DEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSED 300
Query: 439 TVEADDQFGELGAHMRGG 386
TVEADDQFGELGAHMRGG
Sbjct: 301 TVEADDQFGELGAHMRGG 318
>ref|XP_006348609.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
[Solanum tuberosum]
Length = 319
Score = 531 bits (1368), Expect = e-148
Identities = 264/319 (82%), Positives = 294/319 (92%), Gaps = 1/319 (0%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
M+G SYQRFP++KIRE+KDDF+KFELR+TDASIANALRR+MIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDFMKFELRETDASIANALRRIMIAEVPTIAIDLVEIEVNSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFI+HRLGL+PLTS RAMSMRFSRDCDACDGDGQCEYCSVEFYLR KC++DQTLDV
Sbjct: 61 VLNDEFISHRLGLVPLTSERAMSMRFSRDCDACDGDGQCEYCSVEFYLRVKCLSDQTLDV 120
Query: 979 TSRDLISSDPSVVLVDFSD-SSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKW 803
TS+DL+SSD +VV VD+SD SS FDN+ N+GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLLSSDHTVVPVDYSDTSSSFDNTPNKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
Query: 802 SPAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTY 623
SPAATVTFMYEPEI INE+MME L+LE+K +VESSPTKVF ID + + +VVD EAYTY
Sbjct: 181 SPAATVTFMYEPEIYINEDMMESLTLEEKTELVESSPTKVFGIDPENKQVIVVDPEAYTY 240
Query: 622 DDEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSD 443
DDEVLKK EAM PG++EIH KED FIFTVE+TG +KASQLVLNAI++LKQKLDAVRLSD
Sbjct: 241 DDEVLKKAEAMGKPGVVEIHAKEDSFIFTVETTGAVKASQLVLNAIEVLKQKLDAVRLSD 300
Query: 442 DTVEADDQFGELGAHMRGG 386
DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319
>ref|XP_004304034.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Fragaria vesca subsp. vesca]
Length = 318
Score = 528 bits (1361), Expect = e-147
Identities = 264/318 (83%), Positives = 293/318 (92%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
M+G SYQRFPRVKIRE++ D+LKFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIE+NSS
Sbjct: 1 MEGKSYQRFPRVKIREMRHDYLKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFIAHRLGLIPLTS RAMSMRFSRDCDACDGDGQCEYCSVEF+LRA+C +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRARCHSDQTLDV 120
Query: 979 TSRDLISSDPSVVLVDFSDSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKWS 800
TS++L+SSD +VV VDFSD+SG++ SE RGIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121 TSKELLSSDHTVVPVDFSDASGYEASEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180
Query: 799 PAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTYD 620
PAATVTFMYEP+I INEEMM+ LSLE K + V+SSPTKVF+ID TG+ VVVD EAYTYD
Sbjct: 181 PAATVTFMYEPDIRINEEMMDTLSLEDKAAWVDSSPTKVFEIDPNTGKVVVVDPEAYTYD 240
Query: 619 DEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSDD 440
DEV+KK EAM PGL++I KED FIFTVESTG IKASQL+LNAI+ILKQKLDAVRLS+D
Sbjct: 241 DEVIKKAEAMGKPGLVDITAKEDSFIFTVESTGAIKASQLLLNAIEILKQKLDAVRLSED 300
Query: 439 TVEADDQFGELGAHMRGG 386
TVEADDQFGELGAHMRGG
Sbjct: 301 TVEADDQFGELGAHMRGG 318
>gb|EMJ03015.1| hypothetical protein PRUPE_ppa008812mg [Prunus persica]
Length = 318
Score = 525 bits (1351), Expect = e-146
Identities = 259/318 (81%), Positives = 294/318 (92%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
M+G SYQR PRVKIRE++DD++KFELRDTDAS+ANALRRVMIAEVPT+AIDLVEIE+NSS
Sbjct: 1 MEGKSYQRLPRVKIREMRDDYMKFELRDTDASVANALRRVMIAEVPTVAIDLVEIEINSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFIAHRLGLIPLTS RAMSMRFSRDCDACDGDGQCE+CSVEF+LRAKC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
Query: 979 TSRDLISSDPSVVLVDFSDSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKWS 800
TS+DL+SSD +VV VDFSDS+G ++SE +GIIIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121 TSKDLLSSDHTVVPVDFSDSAGMESSEQKGIIIVKLRRGQELRLRAIARKGIGKDHAKWS 180
Query: 799 PAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTYD 620
PAATVTFMYEP+I INEE+M+ L+L++K++ VESSPTKVFD D KT + +VVD EAYTYD
Sbjct: 181 PAATVTFMYEPDIRINEELMDMLTLDEKKAWVESSPTKVFDFDPKTEKVMVVDPEAYTYD 240
Query: 619 DEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSDD 440
DEV+KK EAM PGL++I KED FIFTVESTG +KASQL+LNAI+ILKQKLDAVRLS+D
Sbjct: 241 DEVIKKAEAMGKPGLVDIIAKEDSFIFTVESTGAVKASQLLLNAIEILKQKLDAVRLSED 300
Query: 439 TVEADDQFGELGAHMRGG 386
TVEADDQFGELGAHMRGG
Sbjct: 301 TVEADDQFGELGAHMRGG 318
>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3
[Glycine max]
Length = 319
Score = 520 bits (1338), Expect = e-145
Identities = 264/319 (82%), Positives = 288/319 (90%), Gaps = 1/319 (0%)
Frame = -2
Query: 1339 MDGG-SYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNS 1163
M+GG SY R PRVKIRELKDD+ KFELRDTDASIANALRRVMIAEVPT+AIDLVEIEVNS
Sbjct: 1 MEGGVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNS 60
Query: 1162 SVLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLD 983
SVLNDEFIAHRLGLIPLTS RAMSMRFSRDCDACDGDGQCE+CSVEF+LR KC+ DQTLD
Sbjct: 61 SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLD 120
Query: 982 VTSRDLISSDPSVVLVDFSDSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKW 803
VTS+DL SSDP+V VDFSD S D+ NRGIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121 VTSKDLYSSDPTVSPVDFSDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180
Query: 802 SPAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTY 623
SPAATVTFMYEPEI INE++ME L+LE+KR V+SSPT+VF+ID T + +VVDAEAYTY
Sbjct: 181 SPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTY 240
Query: 622 DDEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSD 443
DDEVLKK EAM PGL+EI ++D FIFTVESTG +KASQLVLNAI+ILKQKLDAVRLS+
Sbjct: 241 DDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSE 300
Query: 442 DTVEADDQFGELGAHMRGG 386
DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319
>gb|ESW29765.1| hypothetical protein PHAVU_002G097400g [Phaseolus vulgaris]
Length = 318
Score = 519 bits (1337), Expect = e-144
Identities = 260/318 (81%), Positives = 290/318 (91%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
M+G SY R PRVKIRELKDD+ KFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFIAHRLGLIPLTS RAMSMRFSRDCDACDGDGQCE+CSVEF+LR KC+ DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDV 120
Query: 979 TSRDLISSDPSVVLVDFSDSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKWS 800
+S+DL SSDPSVV VDFSD + D+SE+RG+IIVKLRRGQEL LRAIARKGIGKDHAKWS
Sbjct: 121 SSKDLYSSDPSVVPVDFSDPASTDSSESRGVIIVKLRRGQELRLRAIARKGIGKDHAKWS 180
Query: 799 PAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTYD 620
PAATVTFMYEPEI +NE++ME L+LE+KR V+SSPT+VF+ID T + +VVD+EAY+YD
Sbjct: 181 PAATVTFMYEPEIHLNEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDSEAYSYD 240
Query: 619 DEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSDD 440
DEV+KK EAM PGL+EI ++D FIFTVESTG IK+SQLVLNAI+ILKQKLDAVRLS+D
Sbjct: 241 DEVIKKAEAMGKPGLVEIIARQDSFIFTVESTGAIKSSQLVLNAIEILKQKLDAVRLSED 300
Query: 439 TVEADDQFGELGAHMRGG 386
TVEADDQFGELGAHMRGG
Sbjct: 301 TVEADDQFGELGAHMRGG 318
>ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata] gi|297329735|gb|EFH60154.1|
RBP36A [Arabidopsis lyrata subsp. lyrata]
Length = 319
Score = 518 bits (1334), Expect = e-144
Identities = 261/319 (81%), Positives = 287/319 (89%), Gaps = 1/319 (0%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
MDG +YQRFP++ IRELKDD+ KFELR+TD S+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKITIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFIAHRLGLIPLTS RAMSMRFSRDCDACDGDGQCE+CSVEF L AKC+ DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSAKCVTDQTLDV 120
Query: 979 TSRDLISSDPSVVLVDFS-DSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKW 803
TSRDL S+DP+V VDF+ DSS D+SE +GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSASDSSEQKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180
Query: 802 SPAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTY 623
SPAATVTFMYEP+I INE+MM+ LS E+K ++ESSPTKVF ID T + VVVD EAYTY
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGIDPVTRQVVVVDPEAYTY 240
Query: 622 DDEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSD 443
D+EV+KK EAM PGLIEIHPK+D FIFTVESTG +KASQLVLNAIDILKQKLDAVRLSD
Sbjct: 241 DEEVIKKAEAMGKPGLIEIHPKDDSFIFTVESTGAVKASQLVLNAIDILKQKLDAVRLSD 300
Query: 442 DTVEADDQFGELGAHMRGG 386
DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319
>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3-like
[Glycine max]
Length = 320
Score = 515 bits (1327), Expect = e-143
Identities = 264/320 (82%), Positives = 289/320 (90%), Gaps = 2/320 (0%)
Frame = -2
Query: 1339 MDGG-SYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNS 1163
M+GG SY R PRVKIRELKDD+ KFELRDTDASIANALRRVMIAEVPT+AIDLVEIEVNS
Sbjct: 1 MEGGVSYARMPRVKIRELKDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNS 60
Query: 1162 SVLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLD 983
SVLNDEFIAHRLGLIPLTS RAMSMRFSRDCDACDGDGQCE+CSVEF+LR KC+ DQTLD
Sbjct: 61 SVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLD 120
Query: 982 VTSRDLISSDPSVVLVDFSDSSGFDNSEN-RGIIIVKLRRGQELNLRAIARKGIGKDHAK 806
VTS+DL SSDP+V VDFSD S D+ +N RGIIIVKLRRGQEL LRAIARKGIGKDHAK
Sbjct: 121 VTSKDLYSSDPTVSPVDFSDPSATDSPDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAK 180
Query: 805 WSPAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYT 626
WSPAATVTFMYEPEI INE++ME L+LE+KR V+SSPT+VF+ID T + +VVDAEAYT
Sbjct: 181 WSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYT 240
Query: 625 YDDEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLS 446
YDDEVLKK EAM PGL+EI ++D FIFTVESTG +KASQLVLNAI+ILKQKLDAVRLS
Sbjct: 241 YDDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLS 300
Query: 445 DDTVEADDQFGELGAHMRGG 386
+DTVEADDQFGELGAHMRGG
Sbjct: 301 EDTVEADDQFGELGAHMRGG 320
>ref|XP_002313865.2| DNA-directed RNA polymerase II 36 kDa polypeptide B family protein
[Populus trichocarpa] gi|550331423|gb|EEE87820.2|
DNA-directed RNA polymerase II 36 kDa polypeptide B
family protein [Populus trichocarpa]
Length = 323
Score = 514 bits (1325), Expect = e-143
Identities = 265/323 (82%), Positives = 289/323 (89%), Gaps = 5/323 (1%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
M+ SYQRFP++KIRE+KDD+LKFELR+TDAS+ANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1 MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFIAHRLGLIPLTS RAM MRFSRDCDACDGDGQCEYCSVEF+LRAKCI DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120
Query: 979 TSRDLISSDPSVVLVDFSDSSG----FDNSEN-RGIIIVKLRRGQELNLRAIARKGIGKD 815
TS+DL SSD +V+ VDFSD S FD++E RGIIIVKLRRGQEL LRAIARKGIGKD
Sbjct: 121 TSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIGKD 180
Query: 814 HAKWSPAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAE 635
HAKWSPAATVTFMYEPEI INE++ME L+LE+K S +ESSPTKVFDID+ T + VVVD E
Sbjct: 181 HAKWSPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPE 240
Query: 634 AYTYDDEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAV 455
AYTYDDEV+KK EAM GLI+I KED FIFTVESTG +KASQLVLNAI+ILKQKLDAV
Sbjct: 241 AYTYDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAV 300
Query: 454 RLSDDTVEADDQFGELGAHMRGG 386
RLSDDTVEADDQFGELG HMRGG
Sbjct: 301 RLSDDTVEADDQFGELGVHMRGG 323
>ref|XP_006298158.1| hypothetical protein CARUB_v10014208mg [Capsella rubella]
gi|482566867|gb|EOA31056.1| hypothetical protein
CARUB_v10014208mg [Capsella rubella]
Length = 319
Score = 514 bits (1324), Expect = e-143
Identities = 258/319 (80%), Positives = 287/319 (89%), Gaps = 1/319 (0%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
MDG +YQRFP+VKIRELKDD+ KFELR+TD S+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFIAHRLGLIPLTS RAMSMRFSRDCDACDGDGQCE+CSVEF L +KC+ DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 979 TSRDLISSDPSVVLVDFS-DSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKW 803
TSRDL S+DP+V VDF+ DSS D+SE++GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSASDSSEHKGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
Query: 802 SPAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTY 623
SPAATVTFMYEP+I INE+MM+ L+ ++K ++ES PTKVF ID T + VVVD EAYTY
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLTEDEKIDLIESCPTKVFGIDPVTRQVVVVDPEAYTY 240
Query: 622 DDEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSD 443
D+EV+KK EAM PGLIEIHPK+D FIFTVESTG +KASQLVLNAIDILKQKLDAVRLSD
Sbjct: 241 DEEVIKKAEAMGKPGLIEIHPKDDSFIFTVESTGAVKASQLVLNAIDILKQKLDAVRLSD 300
Query: 442 DTVEADDQFGELGAHMRGG 386
DTVEADDQFGELGAHM GG
Sbjct: 301 DTVEADDQFGELGAHMHGG 319
>ref|XP_006409557.1| hypothetical protein EUTSA_v10022739mg [Eutrema salsugineum]
gi|557110719|gb|ESQ51010.1| hypothetical protein
EUTSA_v10022739mg [Eutrema salsugineum]
Length = 369
Score = 514 bits (1323), Expect = e-143
Identities = 256/317 (80%), Positives = 288/317 (90%), Gaps = 1/317 (0%)
Frame = -2
Query: 1333 GGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 1154
G SYQRFP+VKIRELKDD+ KFELR+TD S+ANALRRVMI+EVPT+AIDLVEI++NSSVL
Sbjct: 53 GASYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIDINSSVL 112
Query: 1153 NDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDVTS 974
NDEFIAHRLGLIPLTS RAMSMR SRDCD+CDGDGQCE+CSVEF L+AKC+ DQTLDVTS
Sbjct: 113 NDEFIAHRLGLIPLTSERAMSMRLSRDCDSCDGDGQCEFCSVEFRLQAKCVTDQTLDVTS 172
Query: 973 RDLISSDPSVVLVDFS-DSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKWSP 797
RDL S+DP+V VDF+ DSSG D+SE RGIIIVKLRRGQEL LRAIARKGIGKDHAKWSP
Sbjct: 173 RDLYSTDPTVTPVDFTLDSSGTDSSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSP 232
Query: 796 AATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTYDD 617
A+TVTFMYEP+I+INE+MM+ L+ ++K ++ESSPTKVF ID T + VVVD EAYTYD+
Sbjct: 233 ASTVTFMYEPDININEDMMDTLTEDEKIDLIESSPTKVFGIDPVTRQVVVVDPEAYTYDE 292
Query: 616 EVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSDDT 437
EV+KK EAM PGLIEIHPK+D FIFTVESTG +KASQLVLNAIDILKQKLDAVRLSDDT
Sbjct: 293 EVIKKAEAMGKPGLIEIHPKDDSFIFTVESTGAVKASQLVLNAIDILKQKLDAVRLSDDT 352
Query: 436 VEADDQFGELGAHMRGG 386
VEADDQFGELGAH+RGG
Sbjct: 353 VEADDQFGELGAHLRGG 369
>ref|XP_004505300.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like [Cicer
arietinum]
Length = 319
Score = 513 bits (1322), Expect = e-143
Identities = 259/319 (81%), Positives = 288/319 (90%), Gaps = 1/319 (0%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
M+G SY R PRVKIRELKDD++KFELRDTDAS+ANALRRVMI+EVPTIAIDLVEIEVNSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFIAHRLGLIPLTS RAM+MRFSRDCDACDGDGQCEYCSVEF+LR KCI DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120
Query: 979 TSRDLISSDPSVVLVDFS-DSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKW 803
TS+DL SSD +VV VDFS D S ++S+ RGIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLYSSDHTVVPVDFSADPSSLESSDGRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180
Query: 802 SPAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTY 623
SPAATVTFMYEP+I INE++ME L+LE+KR V+SSPT+VFDID T + +VVD EAY+Y
Sbjct: 181 SPAATVTFMYEPDIHINEDLMESLTLEEKREWVDSSPTRVFDIDPVTQQVMVVDPEAYSY 240
Query: 622 DDEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSD 443
DDEV+KK EAM PGL+EI K+D FIFTVESTG +KASQL+LNAI+ILKQKLDAVRLS+
Sbjct: 241 DDEVIKKAEAMGKPGLVEITAKQDSFIFTVESTGAVKASQLLLNAIEILKQKLDAVRLSE 300
Query: 442 DTVEADDQFGELGAHMRGG 386
DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319
>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis thaliana]
gi|11134646|sp|Q39211.1|NRPB3_ARATH RecName:
Full=DNA-directed RNA polymerases II, IV and V subunit 3;
AltName: Full=DNA-directed RNA polymerase II 36 kDa
polypeptide A; AltName: Full=DNA-directed RNA polymerase
II subunit RPB3-A; Short=RNA polymerase II subunit 3-A;
Short=RNA polymerase II subunit B3-A
gi|514318|gb|AAB03741.1| RNA polymerase II third largest
subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
putative DNA-directed RNA polymerase II third largest
subunit [Arabidopsis thaliana] gi|20465883|gb|AAM20046.1|
putative DNA-directed RNA polymerase II [Arabidopsis
thaliana] gi|330251306|gb|AEC06400.1| DNA-directed RNA
polymerase II subunit RPB3-A [Arabidopsis thaliana]
Length = 319
Score = 513 bits (1321), Expect = e-143
Identities = 258/319 (80%), Positives = 288/319 (90%), Gaps = 1/319 (0%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
MDG +YQRFP++KIRELKDD+ KFELR+TD S+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFIAHRLGLIPLTS RAMSMRFSRDCDACDGDGQCE+CSVEF L +KC+ DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 979 TSRDLISSDPSVVLVDFS-DSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKW 803
TSRDL S+DP+V VDF+ DSS D+SE++GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180
Query: 802 SPAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTY 623
SPAATVTFMYEP+I INE+MM+ LS E+K ++ESSPTKVF +D T + VVVD EAYTY
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240
Query: 622 DDEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSD 443
D+EV+KK EAM PGLIEI PK+D FIFTVESTG +KASQLVLNAID+LKQKLDAVRLSD
Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300
Query: 442 DTVEADDQFGELGAHMRGG 386
DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319
>ref|XP_006393120.1| hypothetical protein EUTSA_v10011661mg [Eutrema salsugineum]
gi|557089698|gb|ESQ30406.1| hypothetical protein
EUTSA_v10011661mg [Eutrema salsugineum]
Length = 320
Score = 510 bits (1313), Expect = e-142
Identities = 256/317 (80%), Positives = 285/317 (89%), Gaps = 1/317 (0%)
Frame = -2
Query: 1333 GGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSSVL 1154
G SYQRFP+VKIRELKDD+ KFELR+TD S+ANALRRVMI+EVPT+AIDLVEI +NSSVL
Sbjct: 4 GASYQRFPKVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIMINSSVL 63
Query: 1153 NDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDVTS 974
NDEFIAHRLGLIPLTS RAMSMRFSRDCDACDGDGQCE+CSVEF L AKC+ DQTLDVTS
Sbjct: 64 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFQLGAKCVTDQTLDVTS 123
Query: 973 RDLISSDPSVVLVDFS-DSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKWSP 797
RDL S+DP+V VDF+ D S D+SE RGIIIVKLRRGQEL LRAIARKGIGKDHAKWSP
Sbjct: 124 RDLYSADPTVTPVDFATDPSATDSSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSP 183
Query: 796 AATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTYDD 617
AATVTFMYEP+I+INE+M++ L+ E+K ++ESSPTKVF ID T + VVVD EAYTYD+
Sbjct: 184 AATVTFMYEPDININEDMVDTLTDEEKFDLIESSPTKVFGIDPVTRQVVVVDPEAYTYDE 243
Query: 616 EVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSDDT 437
EV+KK EA+ PGLIEIHPK+D FIFTVE+TG +KASQLVLNAIDILKQKLDAVRLSDDT
Sbjct: 244 EVIKKAEALGKPGLIEIHPKDDSFIFTVETTGAVKASQLVLNAIDILKQKLDAVRLSDDT 303
Query: 436 VEADDQFGELGAHMRGG 386
VEADDQFGELGAHMRGG
Sbjct: 304 VEADDQFGELGAHMRGG 320
>gb|AAM65319.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
Length = 319
Score = 510 bits (1313), Expect = e-142
Identities = 257/319 (80%), Positives = 287/319 (89%), Gaps = 1/319 (0%)
Frame = -2
Query: 1339 MDGGSYQRFPRVKIRELKDDFLKFELRDTDASIANALRRVMIAEVPTIAIDLVEIEVNSS 1160
MDG +YQRFP++KIRELKDD+ KFELR+TD S+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 1159 VLNDEFIAHRLGLIPLTSGRAMSMRFSRDCDACDGDGQCEYCSVEFYLRAKCINDQTLDV 980
VLNDEFIAHRLGLI LTS RAMSMRFSRDCDACDGDGQCE+CSVEF L +KC+ DQTLDV
Sbjct: 61 VLNDEFIAHRLGLISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 979 TSRDLISSDPSVVLVDFS-DSSGFDNSENRGIIIVKLRRGQELNLRAIARKGIGKDHAKW 803
TSRDL S+DP+V VDF+ DSS D+SE++GIIIVKLRRGQEL LRAIARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180
Query: 802 SPAATVTFMYEPEISINEEMMERLSLEQKRSIVESSPTKVFDIDEKTGRFVVVDAEAYTY 623
SPAATVTFMYEP+I INE+MM+ LS E+K ++ESSPTKVF +D T + VVVD EAYTY
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240
Query: 622 DDEVLKKCEAMNMPGLIEIHPKEDCFIFTVESTGGIKASQLVLNAIDILKQKLDAVRLSD 443
D+EV+KK EAM PGLIEI PK+D FIFTVESTG +KASQLVLNAID+LKQKLDAVRLSD
Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300
Query: 442 DTVEADDQFGELGAHMRGG 386
DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319