BLASTX nr result
ID: Rauwolfia21_contig00000419
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00000419
(534 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY06826.1| 30S ribosomal protein S1, chloroplastic [Theobrom... 100 5e-27
ref|XP_004229034.1| PREDICTED: 30S ribosomal protein S1, chlorop... 96 4e-26
ref|XP_006337988.1| PREDICTED: 30S ribosomal protein S1, chlorop... 96 4e-26
gb|EXB94381.1| 30S ribosomal protein S1 [Morus notabilis] 94 1e-25
ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chlorop... 96 1e-25
ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chlorop... 94 2e-25
ref|XP_002316061.2| hypothetical protein POPTR_0010s16010g [Popu... 96 6e-25
ref|XP_004252935.1| PREDICTED: 30S ribosomal protein S1, chlorop... 94 6e-25
gb|ADW83720.1| ribosomal protein S4 [Musa acuminata AAA Group] 93 6e-25
ref|XP_006378555.1| hypothetical protein POPTR_0010s16010g [Popu... 96 6e-25
gb|AFY06648.1| ribosomal protein S, partial [Carica papaya] 93 1e-24
ref|XP_002311368.1| hypothetical protein POPTR_0008s10050g [Popu... 95 1e-24
ref|XP_002519282.1| tex protein-relatedtranscription accessory p... 96 2e-24
ref|XP_006349851.1| PREDICTED: 30S ribosomal protein S1, chlorop... 92 3e-24
sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, ch... 92 4e-24
ref|XP_006488790.1| PREDICTED: 30S ribosomal protein S1, chlorop... 91 7e-24
ref|XP_006419301.1| hypothetical protein CICLE_v10005364mg [Citr... 91 7e-24
ref|XP_006841606.1| hypothetical protein AMTR_s00003p00212290 [A... 87 4e-23
ref|XP_006279348.1| hypothetical protein CARUB_v10012686mg [Caps... 87 1e-22
ref|XP_002874473.1| hypothetical protein ARALYDRAFT_489681 [Arab... 87 1e-22
>gb|EOY06826.1| 30S ribosomal protein S1, chloroplastic [Theobroma cacao]
Length = 443
Score = 100 bits (250), Expect(2) = 5e-27
Identities = 56/91 (61%), Positives = 63/91 (69%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF+TDANGA VDITAK SAYLPV+EA IH IKH EEAGIVPGLREEFV+IGE++
Sbjct: 98 VKGTVFSTDANGALVDITAKSSAYLPVQEACIHKIKHVEEAGIVPGLREEFVIIGEIEAD 157
Query: 357 -------------------MTVQAEDVIVKG 322
+QAEDV+VKG
Sbjct: 158 DSLVLSLRSIQFELAWERCRQLQAEDVVVKG 188
Score = 45.8 bits (107), Expect(2) = 5e-27
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ +VVGANKGGVV +VEGL FVPFSQI + ++ + +P F
Sbjct: 186 VKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEELLDKEIPLKF 232
Score = 50.1 bits (118), Expect(2) = 5e-10
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 314 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 341
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDIA VLQ GDTLKV
Sbjct: 286 LHVSQISHDRVSDIATVLQPGDTLKV 311
>ref|XP_004229034.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Solanum
lycopersicum]
Length = 412
Score = 96.3 bits (238), Expect(2) = 4e-26
Identities = 52/91 (57%), Positives = 61/91 (67%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF+ DANGA VDITAK SAYLP+REAS+H I+H EEAGI PGLREEFVV+GE +
Sbjct: 100 VKGTVFSVDANGALVDITAKSSAYLPLREASLHTIRHVEEAGIFPGLREEFVVVGENEAD 159
Query: 357 -------------------MTVQAEDVIVKG 322
+QAEDV++KG
Sbjct: 160 DSLVLSLRSIQYDLAWERCRQLQAEDVVIKG 190
Score = 47.4 bits (111), Expect(2) = 4e-26
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ +VVGANKGGVV +VEGL FVPFSQI + ++ + LP F
Sbjct: 188 IKGKVVGANKGGVVALVEGLRGFVPFSQISTKSTAEELLEKELPLKF 234
Score = 50.1 bits (118), Expect(2) = 5e-10
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 316 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 343
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDIA VLQ GDTLKV
Sbjct: 288 LHVSQISHDRVSDIATVLQPGDTLKV 313
>ref|XP_006337988.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Solanum
tuberosum]
Length = 411
Score = 96.3 bits (238), Expect(2) = 4e-26
Identities = 52/91 (57%), Positives = 61/91 (67%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF+ DANGA VDITAK SAYLP+REAS+H I+H EEAGI PGLREEFVV+GE +
Sbjct: 99 VKGTVFSVDANGALVDITAKSSAYLPLREASLHTIRHVEEAGIFPGLREEFVVVGENEAD 158
Query: 357 -------------------MTVQAEDVIVKG 322
+QAEDV++KG
Sbjct: 159 DSLVLSLRSIQYDLAWERCRQLQAEDVVIKG 189
Score = 47.4 bits (111), Expect(2) = 4e-26
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ +VVGANKGGVV +VEGL FVPFSQI + ++ + LP F
Sbjct: 187 IKGKVVGANKGGVVALVEGLRGFVPFSQISTKSTAEELLEKELPLKF 233
Score = 50.1 bits (118), Expect(2) = 5e-10
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 315 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 342
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDIA VLQ GDTLKV
Sbjct: 287 LHVSQISHDRVSDIATVLQPGDTLKV 312
>gb|EXB94381.1| 30S ribosomal protein S1 [Morus notabilis]
Length = 424
Score = 94.4 bits (233), Expect(2) = 1e-25
Identities = 52/91 (57%), Positives = 60/91 (65%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF TD NGA VDITAK SAYLP++EASIH IKH EE GIVPGL+EEFV+IGE +
Sbjct: 109 VKGTVFCTDNNGALVDITAKSSAYLPLQEASIHRIKHVEEVGIVPGLKEEFVIIGEYEAD 168
Query: 357 -------------------MTVQAEDVIVKG 322
+QAEDV++KG
Sbjct: 169 DSLVLSLKSIQYDLAWERCRQLQAEDVVLKG 199
Score = 47.8 bits (112), Expect(2) = 1e-25
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
L +VVGANKGGVV +VEGL FVPFSQI + ++ + LP F
Sbjct: 197 LKGKVVGANKGGVVALVEGLRGFVPFSQISSKSTAEELLDKELPLKF 243
Score = 50.1 bits (118), Expect(2) = 5e-10
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 325 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 352
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDIA VLQ GDTLKV
Sbjct: 297 LHVSQISHDRVSDIATVLQPGDTLKV 322
>ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera]
gi|296083203|emb|CBI22839.3| unnamed protein product
[Vitis vinifera]
Length = 410
Score = 95.5 bits (236), Expect(2) = 1e-25
Identities = 54/91 (59%), Positives = 59/91 (64%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF TD NGA VDITAK SAYLPV EA IH IKH EEAGIVPG+REEFV+IGE +
Sbjct: 98 VKGTVFCTDTNGALVDITAKSSAYLPVYEACIHKIKHVEEAGIVPGVREEFVIIGENEAD 157
Query: 357 -------------------MTVQAEDVIVKG 322
+QAEDV+VKG
Sbjct: 158 DSLILSLRSIQYDLAWERCRQLQAEDVVVKG 188
Score = 46.6 bits (109), Expect(2) = 1e-25
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ +VVGANKGGVV +VEGL FVPFSQI + ++ + LP F
Sbjct: 186 VKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEELLDKELPVKF 232
Score = 50.1 bits (118), Expect(2) = 3e-09
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 314 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 341
Score = 37.0 bits (84), Expect(2) = 3e-09
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDIA VLQ GD LKV
Sbjct: 286 LHVSQISHDRVSDIATVLQPGDILKV 311
>ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
sativus] gi|449517357|ref|XP_004165712.1| PREDICTED: 30S
ribosomal protein S1, chloroplastic-like [Cucumis
sativus]
Length = 413
Score = 94.0 bits (232), Expect(2) = 2e-25
Identities = 52/91 (57%), Positives = 59/91 (64%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF TD NGA VDITAK SAYLP++EA IH IKH EEAG+ PGLREEFV+IGE +
Sbjct: 102 VKGTVFCTDNNGALVDITAKSSAYLPLQEACIHRIKHVEEAGVFPGLREEFVIIGENESD 161
Query: 357 -------------------MTVQAEDVIVKG 322
+QAEDV+VKG
Sbjct: 162 DSLILSLRSIQYDLAWERCRQLQAEDVVVKG 192
Score = 47.4 bits (111), Expect(2) = 2e-25
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ +VV ANKGGVV VVEGL FVPFSQI + ++S+ LP F
Sbjct: 190 VKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSNAEELLSKELPLKF 236
Score = 50.1 bits (118), Expect(2) = 1e-09
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 318 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 345
Score = 38.1 bits (87), Expect(2) = 1e-09
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD ISDIA VLQ GD+LKV
Sbjct: 290 LHVSQISHDRISDIATVLQPGDSLKV 315
>ref|XP_002316061.2| hypothetical protein POPTR_0010s16010g [Populus trichocarpa]
gi|550329911|gb|EEF02232.2| hypothetical protein
POPTR_0010s16010g [Populus trichocarpa]
Length = 423
Score = 95.9 bits (237), Expect(2) = 6e-25
Identities = 55/91 (60%), Positives = 60/91 (65%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF TD NGAFVDITAK SAYLPV+EASIH IK EEAGIVPG+REEFV+IGE +
Sbjct: 100 VKGTVFMTDNNGAFVDITAKSSAYLPVQEASIHKIKRVEEAGIVPGMREEFVIIGENEAD 159
Query: 357 -------------------MTVQAEDVIVKG 322
+QAED IVKG
Sbjct: 160 DSLILSLRSIQYELAWERCRQLQAEDAIVKG 190
Score = 43.9 bits (102), Expect(2) = 6e-25
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQI 249
+ +VVG N+GGVV VVEGL FVPFSQI
Sbjct: 188 VKGKVVGGNRGGVVAVVEGLQGFVPFSQI 216
Score = 50.1 bits (118), Expect(2) = 1e-09
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 316 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 343
Score = 38.1 bits (87), Expect(2) = 1e-09
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDI+ VLQ GDTLKV
Sbjct: 288 LHVSQISHDRVSDISTVLQPGDTLKV 313
>ref|XP_004252935.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Solanum
lycopersicum]
Length = 416
Score = 94.0 bits (232), Expect(2) = 6e-25
Identities = 52/91 (57%), Positives = 60/91 (65%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF+ DANGA V+ITAK SAYLPV+EASIH IKH EEAGI PG R+EFVV+GE +
Sbjct: 104 VKGTVFSVDANGALVEITAKSSAYLPVQEASIHSIKHVEEAGIFPGFRDEFVVVGENEAD 163
Query: 357 -------------------MTVQAEDVIVKG 322
+QAEDV+VKG
Sbjct: 164 DSVILSLRSIQYDLAWERCRQLQAEDVVVKG 194
Score = 45.8 bits (107), Expect(2) = 6e-25
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ +VV ANKGGVV +VEGL F+PFSQI+ + ++ + LP F
Sbjct: 192 VKGKVVSANKGGVVALVEGLRGFIPFSQIFSKSTAEELLEKELPLKF 238
Score = 50.1 bits (118), Expect(2) = 4e-09
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 320 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 347
Score = 36.2 bits (82), Expect(2) = 4e-09
Identities = 15/26 (57%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDI+ +LQ GD+LKV
Sbjct: 292 LHVSQISHDRVSDISTILQPGDSLKV 317
>gb|ADW83720.1| ribosomal protein S4 [Musa acuminata AAA Group]
Length = 415
Score = 92.8 bits (229), Expect(2) = 6e-25
Identities = 54/91 (59%), Positives = 58/91 (63%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEM--- 364
VKGTVF TD NGA VDITAK SAYLPV+EA IH IKH EAGI PGL EEFV+IGEM
Sbjct: 104 VKGTVFMTDMNGALVDITAKSSAYLPVQEACIHKIKHVSEAGIYPGLVEEFVIIGEMNAD 163
Query: 363 -----------------KQMTVQAEDVIVKG 322
+ +QAEDVIVKG
Sbjct: 164 DSLILSLRSIQYDLAWERCRQLQAEDVIVKG 194
Score = 47.0 bits (110), Expect(2) = 6e-25
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ +VVG NKGGVV +VEGL FVPFSQI + +I + LP F
Sbjct: 192 VKGKVVGGNKGGVVAIVEGLRGFVPFSQISAKSTAEELIDKELPLKF 238
Score = 50.1 bits (118), Expect(2) = 1e-09
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 320 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 347
Score = 38.1 bits (87), Expect(2) = 1e-09
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDI+ VLQ GDTLKV
Sbjct: 292 LHVSQISHDRVSDISTVLQPGDTLKV 317
>ref|XP_006378555.1| hypothetical protein POPTR_0010s16010g [Populus trichocarpa]
gi|550329912|gb|ERP56352.1| hypothetical protein
POPTR_0010s16010g [Populus trichocarpa]
Length = 404
Score = 95.9 bits (237), Expect(2) = 6e-25
Identities = 55/91 (60%), Positives = 60/91 (65%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF TD NGAFVDITAK SAYLPV+EASIH IK EEAGIVPG+REEFV+IGE +
Sbjct: 100 VKGTVFMTDNNGAFVDITAKSSAYLPVQEASIHKIKRVEEAGIVPGMREEFVIIGENEAD 159
Query: 357 -------------------MTVQAEDVIVKG 322
+QAED IVKG
Sbjct: 160 DSLILSLRSIQYELAWERCRQLQAEDAIVKG 190
Score = 43.9 bits (102), Expect(2) = 6e-25
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQI 249
+ +VVG N+GGVV VVEGL FVPFSQI
Sbjct: 188 VKGKVVGGNRGGVVAVVEGLQGFVPFSQI 216
Score = 50.1 bits (118), Expect(2) = 1e-09
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 316 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 343
Score = 38.1 bits (87), Expect(2) = 1e-09
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDI+ VLQ GDTLKV
Sbjct: 288 LHVSQISHDRVSDISTVLQPGDTLKV 313
>gb|AFY06648.1| ribosomal protein S, partial [Carica papaya]
Length = 324
Score = 92.8 bits (229), Expect(2) = 1e-24
Identities = 53/91 (58%), Positives = 59/91 (64%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGE---- 367
VKGTVF T+ANGA VDITAK SAYLPV+EA IH IKH EAGI PGLREEFV+IGE
Sbjct: 12 VKGTVFRTEANGALVDITAKSSAYLPVQEACIHRIKHVAEAGIFPGLREEFVIIGENDAD 71
Query: 366 ----------------MKQMTVQAEDVIVKG 322
+ +QAEDV+VKG
Sbjct: 72 DSLILSLRMIQYELSWERCRQLQAEDVVVKG 102
Score = 46.2 bits (108), Expect(2) = 1e-24
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ +VVGANKGGVV +VEG+ FVPFSQI + ++ + LP F
Sbjct: 100 VKGKVVGANKGGVVALVEGIRGFVPFSQISTKSTAEELLEKELPLKF 146
Score = 50.1 bits (118), Expect(2) = 5e-10
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 228 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 255
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDIA VLQ GDTLKV
Sbjct: 200 LHVSQISHDRVSDIATVLQPGDTLKV 225
>ref|XP_002311368.1| hypothetical protein POPTR_0008s10050g [Populus trichocarpa]
gi|118485696|gb|ABK94698.1| unknown [Populus
trichocarpa] gi|222851188|gb|EEE88735.1| hypothetical
protein POPTR_0008s10050g [Populus trichocarpa]
Length = 421
Score = 94.7 bits (234), Expect(2) = 1e-24
Identities = 55/91 (60%), Positives = 60/91 (65%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF TD NGA VDITAK SAYLPV+EASIH IK EEAGIVPG+REEFV+IGE +
Sbjct: 100 VKGTVFMTDNNGALVDITAKSSAYLPVQEASIHRIKRLEEAGIVPGMREEFVIIGENEAD 159
Query: 357 -------------------MTVQAEDVIVKG 322
+QAEDVIVKG
Sbjct: 160 DSLILSLRSIHYELAWERCRQLQAEDVIVKG 190
Score = 43.9 bits (102), Expect(2) = 1e-24
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQI 249
+ +VVG NKGG+V VVEGL FVPFSQI
Sbjct: 188 VKGKVVGGNKGGLVAVVEGLRGFVPFSQI 216
Score = 50.1 bits (118), Expect(2) = 5e-10
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 316 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 343
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDIA VLQ GDTLKV
Sbjct: 288 LHVSQISHDRVSDIATVLQPGDTLKV 313
>ref|XP_002519282.1| tex protein-relatedtranscription accessory protein, putative
[Ricinus communis] gi|223541597|gb|EEF43146.1| tex
protein-relatedtranscription accessory protein, putative
[Ricinus communis]
Length = 412
Score = 95.5 bits (236), Expect(2) = 2e-24
Identities = 55/91 (60%), Positives = 60/91 (65%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF TDANGA VDITAK SAYLPV+EA IH IKH EEAGIVPGL +EFV+IGE +
Sbjct: 100 VKGTVFMTDANGAVVDITAKSSAYLPVQEACIHKIKHVEEAGIVPGLTQEFVIIGENEAD 159
Query: 357 -------------------MTVQAEDVIVKG 322
+QAEDVIVKG
Sbjct: 160 DSLILSLRAIQYDLSWERCRQLQAEDVIVKG 190
Score = 42.7 bits (99), Expect(2) = 2e-24
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVE-GLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ +VVGANKGGVV +VE GL FVPFSQI + ++ + LP F
Sbjct: 188 VKGKVVGANKGGVVAIVEGGLRGFVPFSQISSKSTAEELLEKELPLKF 235
Score = 50.1 bits (118), Expect(2) = 5e-10
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 317 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 344
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDIA VLQ GDTLKV
Sbjct: 289 LHVSQISHDRVSDIATVLQPGDTLKV 314
>ref|XP_006349851.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Solanum
tuberosum]
Length = 415
Score = 91.7 bits (226), Expect(2) = 3e-24
Identities = 51/91 (56%), Positives = 60/91 (65%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF+ DANGA V+ITAK SAYLP++EASI+ IKH EEAGI PG R+EFVVIGE +
Sbjct: 103 VKGTVFSVDANGALVEITAKSSAYLPIQEASIYSIKHVEEAGIFPGFRDEFVVIGENEAD 162
Query: 357 -------------------MTVQAEDVIVKG 322
+QAEDV+VKG
Sbjct: 163 DSVILSLRSIQYDLAWERCRQLQAEDVVVKG 193
Score = 45.8 bits (107), Expect(2) = 3e-24
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ +VV ANKGGVV +VEGL F+PFSQI+ + ++ + LP F
Sbjct: 191 VKGKVVSANKGGVVALVEGLRGFIPFSQIFSKSTAEELLEKELPLKF 237
Score = 48.1 bits (113), Expect(2) = 5e-09
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEP PG DMIRNP
Sbjct: 319 LSHDRERGRVSLSTKKLEPAPG-DMIRNP 346
Score = 37.7 bits (86), Expect(2) = 5e-09
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDI VLQ GDTLKV
Sbjct: 291 LHVSQISHDRVSDIVTVLQPGDTLKV 316
>sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, chloroplastic; AltName:
Full=CS1; Flags: Precursor gi|18060|emb|CAA46927.1|
ribosomal protein S1 [Spinacia oleracea]
gi|170143|gb|AAA34045.1| chloroplast ribosomal protein
S1 [Spinacia oleracea]
Length = 411
Score = 91.7 bits (226), Expect(2) = 4e-24
Identities = 52/91 (57%), Positives = 63/91 (69%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGE---- 367
VKGTVF TDANGA VDITAK SAYLP+ EA I+ IK+ EEAGI+PG+REEFV+IGE
Sbjct: 99 VKGTVFCTDANGALVDITAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEAD 158
Query: 366 ------MKQM----------TVQAEDVIVKG 322
++Q+ +QAEDV+VKG
Sbjct: 159 DSLILSLRQIQYELAWERCRQLQAEDVVVKG 189
Score = 45.4 bits (106), Expect(2) = 4e-24
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ ++VGANKGGVV +VEGL FVPFSQI + ++ + +P F
Sbjct: 187 VKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKF 233
Score = 50.1 bits (118), Expect(2) = 5e-10
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 315 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 342
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDIA VLQ GDTLKV
Sbjct: 287 LHVSQISHDRVSDIATVLQPGDTLKV 312
>ref|XP_006488790.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Citrus
sinensis]
Length = 414
Score = 90.9 bits (224), Expect(2) = 7e-24
Identities = 51/91 (56%), Positives = 58/91 (63%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF TD GA VDITAK SAYLP +EA IH IKH EEAGIVPGL+EEFV+IGE +
Sbjct: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
Query: 357 -------------------MTVQAEDVIVKG 322
+Q+EDV+VKG
Sbjct: 163 DSLVLSLRMIQYELAWERCRQLQSEDVVVKG 193
Score = 45.4 bits (106), Expect(2) = 7e-24
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ +VVGANKGGVV VEGL FVPFSQI + ++ + LP F
Sbjct: 191 VKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKF 237
Score = 50.1 bits (118), Expect(2) = 1e-09
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 319 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 346
Score = 38.1 bits (87), Expect(2) = 1e-09
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD ++DIA VLQ GDTLKV
Sbjct: 291 LHVSQISHDRVADIATVLQPGDTLKV 316
>ref|XP_006419301.1| hypothetical protein CICLE_v10005364mg [Citrus clementina]
gi|557521174|gb|ESR32541.1| hypothetical protein
CICLE_v10005364mg [Citrus clementina]
Length = 339
Score = 90.9 bits (224), Expect(2) = 7e-24
Identities = 51/91 (56%), Positives = 58/91 (63%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF TD GA VDITAK SAYLP +EA IH IKH EEAGIVPGL+EEFV+IGE +
Sbjct: 28 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 87
Query: 357 -------------------MTVQAEDVIVKG 322
+Q+EDV+VKG
Sbjct: 88 DSLVLSLRMIQYELAWERCRQLQSEDVVVKG 118
Score = 45.4 bits (106), Expect(2) = 7e-24
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ +VVGANKGGVV VEGL FVPFSQI + ++ + LP F
Sbjct: 116 VKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKF 162
Score = 50.1 bits (118), Expect(2) = 1e-09
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 244 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 271
Score = 38.1 bits (87), Expect(2) = 1e-09
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD ++DIA VLQ GDTLKV
Sbjct: 216 LHVSQISHDRVADIATVLQPGDTLKV 241
>ref|XP_006841606.1| hypothetical protein AMTR_s00003p00212290 [Amborella trichopoda]
gi|548843627|gb|ERN03281.1| hypothetical protein
AMTR_s00003p00212290 [Amborella trichopoda]
Length = 423
Score = 87.4 bits (215), Expect(2) = 4e-23
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 20/91 (21%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKG+VF TDANGA +DITAK +AYLPV+EA I+ +KH EAGI PG++EEFV+IGE +
Sbjct: 110 VKGSVFRTDANGALIDITAKSTAYLPVQEACIYKVKHVAEAGIFPGMQEEFVIIGEREDD 169
Query: 357 -------------------MTVQAEDVIVKG 322
+QAEDV+VKG
Sbjct: 170 DSLILSLRSIQFDLAWERCRQLQAEDVVVKG 200
Score = 46.2 bits (108), Expect(2) = 4e-23
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ +++G NKGGVV VVEGL FVPFSQI + +I + LP F
Sbjct: 198 VKGKIIGGNKGGVVAVVEGLRGFVPFSQISTKTAAEDLIDKELPLKF 244
Score = 50.1 bits (118), Expect(2) = 5e-10
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD ERGRVSL TKKLEPTPG DMIRNP
Sbjct: 326 LSHDRERGRVSLSTKKLEPTPG-DMIRNP 353
Score = 39.3 bits (90), Expect(2) = 5e-10
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDIA VLQ GDTLKV
Sbjct: 298 LHVSQISHDRVSDIATVLQPGDTLKV 323
>ref|XP_006279348.1| hypothetical protein CARUB_v10012686mg [Capsella rubella]
gi|482548040|gb|EOA12246.1| hypothetical protein
CARUB_v10012686mg [Capsella rubella]
Length = 417
Score = 87.4 bits (215), Expect(2) = 1e-22
Identities = 51/90 (56%), Positives = 57/90 (63%), Gaps = 20/90 (22%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF TDANGA VDI+AK SAYL V +A IH IKH EEAGIVPG+ EEFV+IGE +
Sbjct: 103 VKGTVFKTDANGALVDISAKSSAYLTVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESD 162
Query: 357 -------------------MTVQAEDVIVK 325
+QAEDVIVK
Sbjct: 163 DSLLLSLRNIQYELAWERCRQLQAEDVIVK 192
Score = 44.7 bits (104), Expect(2) = 1e-22
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ ++V+GANKGG+V +VEGL FVPFSQI + ++ + +P F
Sbjct: 191 VKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKF 237
Score = 48.9 bits (115), Expect(2) = 1e-09
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD +RGRVSL TKKLEPTPG DMIRNP
Sbjct: 319 LSHDRDRGRVSLSTKKLEPTPG-DMIRNP 346
Score = 39.3 bits (90), Expect(2) = 1e-09
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDIA VLQ GDTLKV
Sbjct: 291 LHVSQISHDRVSDIATVLQPGDTLKV 316
>ref|XP_002874473.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
lyrata] gi|297320310|gb|EFH50732.1| hypothetical protein
ARALYDRAFT_489681 [Arabidopsis lyrata subsp. lyrata]
Length = 416
Score = 87.4 bits (215), Expect(2) = 1e-22
Identities = 51/90 (56%), Positives = 57/90 (63%), Gaps = 20/90 (22%)
Frame = -1
Query: 534 VKGTVFATDANGAFVDITAKPSAYLPVREASIHFIKHGEEAGIVPGLREEFVVIGEMKQ- 358
VKGTVF TDANGA VDI+AK SAYL V +A IH IKH EEAGIVPG+ EEFV+IGE +
Sbjct: 102 VKGTVFKTDANGALVDISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESD 161
Query: 357 -------------------MTVQAEDVIVK 325
+QAEDVIVK
Sbjct: 162 DSLLLSLRNIQYELAWERCRQLQAEDVIVK 191
Score = 44.7 bits (104), Expect(2) = 1e-22
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = -2
Query: 335 LSSRVVGANKGGVVTVVEGLHEFVPFSQIYIYFRSVMIISQILP*SF 195
+ ++V+GANKGG+V +VEGL FVPFSQI + ++ + +P F
Sbjct: 190 VKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKF 236
Score = 48.9 bits (115), Expect(2) = 1e-09
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = -2
Query: 89 VSHDCERGRVSLPTKKLEPTPGRDMIRNP 3
+SHD +RGRVSL TKKLEPTPG DMIRNP
Sbjct: 318 LSHDRDRGRVSLSTKKLEPTPG-DMIRNP 345
Score = 39.3 bits (90), Expect(2) = 1e-09
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -1
Query: 249 IYLLQISHDNISDIAIVLQLGDTLKV 172
+++ QISHD +SDIA VLQ GDTLKV
Sbjct: 290 LHVSQISHDRVSDIATVLQPGDTLKV 315