BLASTX nr result
ID: Phellodendron21_contig00045374
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Phellodendron21_contig00045374
(774 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YP_004901701.1 polymerase [Blueberry necrotic ring blotch virus]... 82 5e-14
AGI44298.1 RNA dependent RNA polymerase [Blueberry necrotic ring... 80 3e-13
ALT31809.1 replication-associated protein 2 [Tobacco rattle virus] 76 6e-12
ALT31804.1 replication-associated protein 2 [Tobacco rattle virus] 76 6e-12
ACX54058.1 194 kDa readthrough protein [Tobacco rattle virus] 76 6e-12
CAO78189.1 putative 57-kDa polymerase, partial [Tobacco rattle v... 75 1e-11
ALV82083.1 replication-associated protein 1, partial [Tobacco ra... 75 1e-11
AKA63704.1 replication-associated protein 2 [Tobacco rattle virus] 75 1e-11
ALV82093.1 replication-associated protein 1, partial [Tobacco ra... 75 1e-11
ALV82088.1 replication-associated protein 1 [Tobacco rattle virus] 75 1e-11
CAE52518.1 replicase [Tobacco rattle virus] 75 1e-11
P05080.2 RecName: Full=Replicase large subunit; AltName: Full=19... 75 1e-11
AHG52750.1 RNA-dependent RNA polymerase [Tobacco rattle virus] 75 1e-11
AFN02871.1 194K replication-associated protein 2 [Tobacco rattle... 75 1e-11
AAC02066.2 RNA polymerase [Tobacco rattle virus] 75 1e-11
AAG46032.1 RNA-dependent RNA polymerase [Tobacco rattle virus] 75 1e-11
NP_620669.1 194 kDa protein [Tobacco rattle virus] Q9J942.2 RecN... 75 1e-11
AAM50509.1 putative replicase [Tobacco rattle virus] 75 1e-11
ADU05353.1 replication-associated protein 2 [Tobacco rattle virus] 74 2e-11
ALV82076.1 replication-associated protein 1 [Tobacco rattle virus] 74 4e-11
>YP_004901701.1 polymerase [Blueberry necrotic ring blotch virus] AEQ55300.1
polymerase [Blueberry necrotic ring blotch virus]
Length = 1144
Score = 82.0 bits (201), Expect = 5e-14
Identities = 64/238 (26%), Positives = 105/238 (44%)
Frame = +2
Query: 47 YRYHGDSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIV 226
Y Y D +D+S E + G+ E + W+ A L + I + V
Sbjct: 899 YSYEFDMSKYDKSQGQLVLDFECALMRRLGVPEYIVGCWRVAHTRTRARDLTNKISFETV 958
Query: 227 LQGLSGIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLAL 406
Q SG T F N ++ + A++D L + ++ GDD + + P D + L
Sbjct: 959 FQRKSGDASTYFGNTVILMIALLDV--LPDEDVVFGAFSGDDSLIFSTRPPDKIDFKI-L 1015
Query: 407 AWKYNLSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEK 586
+ +YN KLF+ +FC K + V+G W DP+K+ + A + N D + E
Sbjct: 1016 STRYNFEVKLFDFQYHYFCSKFVLNVNGRWVVTPDPLKRAVKLGRADLRN---FDHVEEY 1072
Query: 587 WISLRDDLRHYDNGVVMEAMGDAVYKRGGRSRPPMGLIGGLANLAENKNAFFAFYGPA 760
+S D+++ Y+N V+E + AV +R G P I + +L + KN FY A
Sbjct: 1073 RVSFIDNVKTYNNSAVVEKLSLAVMERYGSFHNPSLAIQCMYHLGKKKNFSSLFYHAA 1130
>AGI44298.1 RNA dependent RNA polymerase [Blueberry necrotic ring blotch virus]
Length = 1145
Score = 79.7 bits (195), Expect = 3e-13
Identities = 63/238 (26%), Positives = 105/238 (44%)
Frame = +2
Query: 47 YRYHGDSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIV 226
Y Y D +D+S E + G+ E + W+ A L + I + V
Sbjct: 900 YSYEFDMSKYDKSQGQLVLDFECALMRRLGVPEYIVGCWRVAHTRTRARDLTNKISFETV 959
Query: 227 LQGLSGIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLAL 406
Q SG T F N ++ + A++D L + ++ GDD + + P D + L
Sbjct: 960 FQRKSGDASTYFGNTVILMIALLDV--LPDEDVVFGAFSGDDSLIFSTRPPDKIDFKI-L 1016
Query: 407 AWKYNLSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEK 586
+ +YN KLF+ +FC K + V+G W DP+K+ + A + N + + E
Sbjct: 1017 STRYNFEVKLFDFQYHYFCSKFVLNVNGRWVVTPDPLKRAVKLGRADLRN---FEHVEEY 1073
Query: 587 WISLRDDLRHYDNGVVMEAMGDAVYKRGGRSRPPMGLIGGLANLAENKNAFFAFYGPA 760
+S D+++ Y+N V+E + AV +R G P I + +L + KN FY A
Sbjct: 1074 RVSFIDNVKTYNNSAVVEKLSLAVMERYGSYYNPSLAIQCMYHLGKKKNFSSLFYHAA 1131
>ALT31809.1 replication-associated protein 2 [Tobacco rattle virus]
Length = 1707
Score = 75.9 bits (185), Expect = 6e-12
Identities = 54/202 (26%), Positives = 90/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPRGTQFADPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + ++V R
Sbjct: 1630 DSNRALGNYMVISKLSESVSDR 1651
>ALT31804.1 replication-associated protein 2 [Tobacco rattle virus]
Length = 1707
Score = 75.9 bits (185), Expect = 6e-12
Identities = 54/202 (26%), Positives = 90/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPRGTQFADPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + ++V R
Sbjct: 1630 DSNRALGNYMVVSKLSESVSDR 1651
>ACX54058.1 194 kDa readthrough protein [Tobacco rattle virus]
Length = 1707
Score = 75.9 bits (185), Expect = 6e-12
Identities = 54/202 (26%), Positives = 91/202 (45%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + + + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALLSELPLKKAVMVTYG--GDDSLIAFPKGTQFTDPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + ++V R
Sbjct: 1630 DSNRALGNYMVVSKLSESVSDR 1651
>CAO78189.1 putative 57-kDa polymerase, partial [Tobacco rattle virus]
Length = 500
Score = 74.7 bits (182), Expect = 1e-11
Identities = 54/202 (26%), Positives = 89/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 248 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 307
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + LA K+N
Sbjct: 308 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPRGTQFVDPCPKLATKWN 365
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 366 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 422
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + ++V R
Sbjct: 423 DSNRALGNYMVVSKLSESVSDR 444
>ALV82083.1 replication-associated protein 1, partial [Tobacco rattle virus]
Length = 1614
Score = 75.1 bits (183), Expect = 1e-11
Identities = 54/202 (26%), Positives = 90/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1362 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1421
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + + LA K+N
Sbjct: 1422 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPKGTQFVDPCPKLATKWN 1479
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1480 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1536
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + ++V R
Sbjct: 1537 DSNRALGNYMVVSKLSESVSDR 1558
>AKA63704.1 replication-associated protein 2 [Tobacco rattle virus]
Length = 1707
Score = 75.1 bits (183), Expect = 1e-11
Identities = 54/202 (26%), Positives = 90/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPKGTQFVDPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + ++V R
Sbjct: 1630 DSNRALGNYMVVSKLSESVSDR 1651
>ALV82093.1 replication-associated protein 1, partial [Tobacco rattle virus]
Length = 1608
Score = 74.7 bits (182), Expect = 1e-11
Identities = 54/202 (26%), Positives = 89/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1356 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1415
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + LA K+N
Sbjct: 1416 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPRGTQFVDPCPKLATKWN 1473
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1474 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1530
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + ++V R
Sbjct: 1531 DSNRALGNYMVVSKLSESVSDR 1552
>ALV82088.1 replication-associated protein 1 [Tobacco rattle virus]
Length = 1707
Score = 74.7 bits (182), Expect = 1e-11
Identities = 54/202 (26%), Positives = 89/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPRGTQFVDPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + ++V R
Sbjct: 1630 DSNRALGNYMVVSKLSESVSDR 1651
>CAE52518.1 replicase [Tobacco rattle virus]
Length = 1707
Score = 74.7 bits (182), Expect = 1e-11
Identities = 54/202 (26%), Positives = 89/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPRGTQFVDPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + ++V R
Sbjct: 1630 DSNRALGNYMVVSKLSESVSDR 1651
>P05080.2 RecName: Full=Replicase large subunit; AltName: Full=194 kDa protein;
AltName: Full=RNA-directed RNA polymerase; Contains:
RecName: Full=Replicase small subunit; AltName: Full=134
kDa protein; AltName: Full=Methyltransferase/RNA helicase
BAA00110.1 194K protein [Tobacco rattle virus]
Length = 1707
Score = 74.7 bits (182), Expect = 1e-11
Identities = 54/202 (26%), Positives = 89/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPRGTQFVDPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + ++V R
Sbjct: 1630 DSNRALGNYMVVSKLSESVSDR 1651
>AHG52750.1 RNA-dependent RNA polymerase [Tobacco rattle virus]
Length = 1707
Score = 74.7 bits (182), Expect = 1e-11
Identities = 53/202 (26%), Positives = 89/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPRGTQFVDPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLETSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + +++ R
Sbjct: 1630 DSNRALGNYMVVSKLSESISDR 1651
>AFN02871.1 194K replication-associated protein 2 [Tobacco rattle virus]
AHG52746.1 RNA-dependent RNA polymerase [Tobacco rattle
virus] AHG52754.1 RNA-dependent RNA polymerase [Tobacco
rattle virus] AHG52758.1 RNA-dependent RNA polymerase
[Tobacco rattle virus]
Length = 1707
Score = 74.7 bits (182), Expect = 1e-11
Identities = 53/202 (26%), Positives = 89/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPRGTQFVDPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLETSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + +++ R
Sbjct: 1630 DSNRALGNYMVVSKLSESISDR 1651
>AAC02066.2 RNA polymerase [Tobacco rattle virus]
Length = 1707
Score = 74.7 bits (182), Expect = 1e-11
Identities = 54/202 (26%), Positives = 89/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPRGTQFVDPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + ++V R
Sbjct: 1630 DSNRALGNYMVVSKLSESVSDR 1651
>AAG46032.1 RNA-dependent RNA polymerase [Tobacco rattle virus]
Length = 1707
Score = 74.7 bits (182), Expect = 1e-11
Identities = 54/202 (26%), Positives = 89/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPRGTQFVDPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + ++V R
Sbjct: 1630 DSNRALGNYMVVSKLSESVSDR 1651
>NP_620669.1 194 kDa protein [Tobacco rattle virus] Q9J942.2 RecName:
Full=Replicase large subunit; AltName: Full=194 kDa
protein; AltName: Full=RNA-directed RNA polymerase;
Contains: RecName: Full=Replicase small subunit; AltName:
Full=134 kDa protein; AltName: Full=Methyltransferase/RNA
helicase AAD48027.2 194 kDa protein [Tobacco rattle
virus]
Length = 1707
Score = 74.7 bits (182), Expect = 1e-11
Identities = 54/202 (26%), Positives = 89/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPRGTQFVDPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + ++V R
Sbjct: 1630 DSNRALGNYMVVSKLSESVSDR 1651
>AAM50509.1 putative replicase [Tobacco rattle virus]
Length = 1707
Score = 74.7 bits (182), Expect = 1e-11
Identities = 54/202 (26%), Positives = 89/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPRGTQFVDPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + ++V R
Sbjct: 1630 DSNRALGNYMVVSKLSESVSDR 1651
>ADU05353.1 replication-associated protein 2 [Tobacco rattle virus]
Length = 1707
Score = 74.3 bits (181), Expect = 2e-11
Identities = 53/202 (26%), Positives = 89/202 (44%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ L++ +++ GDD + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALLSELPLEKAVMVTYG--GDDSLIAFPRGTQFVDPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + +++ R
Sbjct: 1630 DSNRALGNYMVVSKLSESISDR 1651
>ALV82076.1 replication-associated protein 1 [Tobacco rattle virus]
Length = 1707
Score = 73.6 bits (179), Expect = 4e-11
Identities = 54/202 (26%), Positives = 88/202 (43%)
Frame = +2
Query: 62 DSYNFDRSLELTAFTVELMFYKMHGLDEATLDRWKTTMGVKTAVSLMHGILMKIVLQGLS 241
D FD+S ++L Y++ GLDE W+ + T + +G++ I Q S
Sbjct: 1455 DMSKFDKSANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKS 1514
Query: 242 GIFKTLFRNGLVTLAAIVDSARLQRDTLISLDIKGDDYTVEVSEPIDVSRATLALAWKYN 421
G T N TL A++ + L D + + GDD + LA K+N
Sbjct: 1515 GDADTYNANSDRTLCALL--SELPLDKAVMVTYGGDDSLIAFPRGTQFVDPCPKLATKWN 1572
Query: 422 LSAKLFEDDVLWFCGKAWIQVDGWWYWVADPIKKYEAVSAAQVLNDKGDDALVEKWISLR 601
K+F+ DV FCGK ++ + +V DP+K + + K L E +ISL
Sbjct: 1573 FECKIFKYDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSI---KDVQHLAEIYISLN 1629
Query: 602 DDLRHYDNGVVMEAMGDAVYKR 667
D R N +V+ + +++ R
Sbjct: 1630 DSNRALGNYMVVSKLSESISDR 1651