BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Phellodendron21_contig00042220
         (607 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

JAV01726.1 Retrovirus-related Pol polyprotein from transposon TN...    93   2e-22
OAP05046.1 hypothetical protein AXX17_AT3G36250 [Arabidopsis tha...    90   1e-21
CAN65627.1 hypothetical protein VITISV_032735 [Vitis vinifera]         83   3e-21
BAA22288.1 polyprotein [Oryza australiensis]                           87   7e-21
CAN64055.1 hypothetical protein VITISV_044406 [Vitis vinifera]         84   7e-21
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r...    92   9e-21
ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]     85   1e-20
CAN77149.1 hypothetical protein VITISV_019364 [Vitis vinifera]         81   1e-20
OIT33734.1 retrovirus-related pol polyprotein from transposon tn...    79   2e-20
OIT19646.1 retrovirus-related pol polyprotein from transposon tn...    77   2e-20
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]     84   2e-20
KYP68473.1 Retrovirus-related Pol polyprotein from transposon TN...    89   2e-20
OIT35913.1 retrovirus-related pol polyprotein from transposon tn...    79   2e-20
OIT19108.1 retrovirus-related pol polyprotein from transposon tn...    79   2e-20
OIT02540.1 retrovirus-related pol polyprotein from transposon tn...    79   2e-20
OIT20449.1 retrovirus-related pol polyprotein from transposon tn...    79   3e-20
AAD17357.1 contains similarity to retrovirus-related polyprotein...    89   6e-20
CAE02400.1 OSJNBa0024J22.4 [Oryza sativa Japonica Group] CAD4052...    84   6e-20
OIT05907.1 retrovirus-related pol polyprotein from transposon tn...    77   6e-20
OIT21703.1 retrovirus-related pol polyprotein from transposon tn...    77   7e-20

>JAV01726.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Noccaea caerulescens]
          Length = 243

 Score = 92.8 bits (229), Expect(2) = 2e-22
 Identities = 42/70 (60%), Positives = 55/70 (78%)
 Frame = +2

Query: 281 EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
           EYIAA EA KEA WI+KFVT+LGV+ SI   + LYCDNN  I Q KE R+H+KSKH++R+
Sbjct: 133 EYIAASEAAKEAVWIRKFVTELGVIPSISGPVDLYCDNNGAIAQAKEPRSHQKSKHIERR 192

Query: 461 CHIIKEILTR 490
            H+I++I+ R
Sbjct: 193 YHLIRDIVDR 202



 Score = 40.4 bits (93), Expect(2) = 2e-22
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMGFRY 603
           GDV + RV T+ NVADPLTK L     + H  A+G R+
Sbjct: 203 GDVKISRVSTDANVADPLTKPLPRPKHESHTTAIGIRF 240


>OAP05046.1 hypothetical protein AXX17_AT3G36250 [Arabidopsis thaliana]
          Length = 224

 Score = 90.1 bits (222), Expect(2) = 1e-21
 Identities = 39/71 (54%), Positives = 54/71 (76%)
 Frame = +2

Query: 278 VEYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKR 457
           VEYI+A EA KE  WI+KF+ ++GV+ SI  L+ LYCDNN  I Q KE R+H+KSKH+ R
Sbjct: 113 VEYISASEAAKEVVWIRKFIAEIGVIPSISGLVDLYCDNNGAIAQAKEPRSHQKSKHILR 172

Query: 458 KCHIIKEILTR 490
           + H+I++I+ R
Sbjct: 173 RYHLIRDIVDR 183



 Score = 40.8 bits (94), Expect(2) = 1e-21
 Identities = 19/38 (50%), Positives = 23/38 (60%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMGFRY 603
           GDV + RV T  NV DPLTK L     + H+ A+G RY
Sbjct: 184 GDVKIRRVSTNANVVDPLTKPLPRPKHESHITAVGIRY 221


>CAN65627.1 hypothetical protein VITISV_032735 [Vitis vinifera]
          Length = 1285

 Score = 83.2 bits (204), Expect(2) = 3e-21
 Identities = 36/70 (51%), Positives = 51/70 (72%)
 Frame = +2

Query: 281  EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
            EY+AA EA KEA W++ F+ DLGVV S+   I LYCDN+  +   KE R+HK++KH+ RK
Sbjct: 1173 EYVAASEAAKEAVWLRNFLLDLGVVPSVQSPITLYCDNSGAVANSKEPRSHKRAKHIXRK 1232

Query: 461  CHIIKEILTR 490
             H+I++I+ R
Sbjct: 1233 YHLIRDIVQR 1242



 Score = 46.2 bits (108), Expect(2) = 3e-21
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = +1

Query: 490  GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMGFR 600
            GDV+V ++ +E N+ADP TK L+   F++HVE MG +
Sbjct: 1243 GDVVVMKIASENNLADPFTKSLSSTTFERHVEGMGVK 1279


>BAA22288.1 polyprotein [Oryza australiensis]
          Length = 1317

 Score = 86.7 bits (213), Expect(2) = 7e-21
 Identities = 40/70 (57%), Positives = 54/70 (77%)
 Frame = +2

Query: 281  EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
            EYIAA EA KEA WI+KFV++LGV++S    + LYCDN+  I Q KE R+H+KSKH+ R+
Sbjct: 1207 EYIAASEAAKEAVWIKKFVSELGVMTSTTGPMSLYCDNSGAIAQAKEPRSHQKSKHILRR 1266

Query: 461  CHIIKEILTR 490
             H+I+EI+ R
Sbjct: 1267 YHLIREIVDR 1276



 Score = 41.6 bits (96), Expect(2) = 7e-21
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +1

Query: 490  GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMGFRY 603
            GDV + +V T+ N+ADPLTK L     + H  AMG RY
Sbjct: 1277 GDVKICKVHTDLNIADPLTKPLPQPKHEAHTRAMGIRY 1314


>CAN64055.1 hypothetical protein VITISV_044406 [Vitis vinifera]
          Length = 633

 Score = 84.0 bits (206), Expect(2) = 7e-21
 Identities = 36/70 (51%), Positives = 52/70 (74%)
 Frame = +2

Query: 281 EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
           EY+AA EA KEA W++ F+ DLGVV S+   I LYCDN+  +   KE R+HK++KH++RK
Sbjct: 521 EYVAASEAAKEAVWLRNFLLDLGVVPSVQSPITLYCDNSGAVANSKEPRSHKRAKHIERK 580

Query: 461 CHIIKEILTR 490
            H+I++I+ R
Sbjct: 581 YHLIRDIVQR 590



 Score = 44.3 bits (103), Expect(2) = 7e-21
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMGFR 600
           GD +V ++ +E N+ADP TK L+   F++HVE MG +
Sbjct: 591 GDXVVMKIASENNLADPFTKSLSSXTFERHVEGMGVK 627


>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] CAB80804.1 putative
            retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score = 92.0 bits (227), Expect(2) = 9e-21
 Identities = 42/70 (60%), Positives = 54/70 (77%)
 Frame = +2

Query: 281  EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
            EYIAA EA KE  WI+KF+T+LGVV SI   I LYCDNN  I Q KE ++H+KSKH++R+
Sbjct: 854  EYIAASEAAKEVVWIRKFITELGVVPSISGPIDLYCDNNGAIAQAKEPKSHQKSKHIQRR 913

Query: 461  CHIIKEILTR 490
             H+I+EI+ R
Sbjct: 914  YHLIREIIDR 923



 Score = 35.8 bits (81), Expect(2) = 9e-21
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 490  GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMGFRY 603
            GDV + RV T+ NVAD  TK L     + H  A+G R+
Sbjct: 924  GDVKISRVSTDANVADHFTKPLPQPKHESHTTAIGIRF 961


>ADB85430.1 putative retrotransposon protein [Phyllostachys edulis]
          Length = 896

 Score = 85.1 bits (209), Expect(2) = 1e-20
 Identities = 38/70 (54%), Positives = 51/70 (72%)
 Frame = +2

Query: 281 EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
           EYIAA EA KE  WI+ F+T+LG+V S    + LYCDNN  I Q KE R+H+KSKH+ R+
Sbjct: 787 EYIAASEAAKEGVWIRNFITELGMVPSASSPMDLYCDNNGAIAQAKEPRSHQKSKHILRR 846

Query: 461 CHIIKEILTR 490
            H+I+E++ R
Sbjct: 847 YHLIRELVDR 856



 Score = 42.4 bits (98), Expect(2) = 1e-20
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMGFRY 603
           GDV + +V T+ N+ADPLTK LT    + H  A+G RY
Sbjct: 857 GDVKICKVHTDLNIADPLTKPLTQPKHEAHTRAIGIRY 894


>CAN77149.1 hypothetical protein VITISV_019364 [Vitis vinifera]
          Length = 1544

 Score = 80.9 bits (198), Expect(2) = 1e-20
 Identities = 34/70 (48%), Positives = 51/70 (72%)
 Frame = +2

Query: 281  EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
            +Y+AA EA KE  W++ F+ DLGVV S+   I LYCDN+  +   KE R+HK++KH++RK
Sbjct: 1432 KYVAASEAAKEVVWLRNFLLDLGVVPSVQSPITLYCDNSGAVANSKEPRSHKRAKHIERK 1491

Query: 461  CHIIKEILTR 490
             H+I++I+ R
Sbjct: 1492 YHLIRDIVQR 1501



 Score = 46.2 bits (108), Expect(2) = 1e-20
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = +1

Query: 490  GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMGFR 600
            GDV+V ++ +E N+ADP TK L+   F++HVE MG +
Sbjct: 1502 GDVVVMKIASENNLADPFTKSLSSTTFERHVEGMGVK 1538


>OIT33734.1 retrovirus-related pol polyprotein from transposon tnt 1-94,
           partial [Nicotiana attenuata]
          Length = 138

 Score = 79.0 bits (193), Expect(2) = 2e-20
 Identities = 35/70 (50%), Positives = 50/70 (71%)
 Frame = +2

Query: 281 EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
           EY+AA EA KEA W++ F+ +L VV S+   I LYCDN+ V+   KE R+HK+SKH++ K
Sbjct: 33  EYVAASEAAKEAVWLRNFLKELNVVPSVQAPIVLYCDNSGVVANSKEPRSHKRSKHIEHK 92

Query: 461 CHIIKEILTR 490
            H+I++I  R
Sbjct: 93  YHLIRDITQR 102



 Score = 48.1 bits (113), Expect(2) = 2e-20
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMG 594
           GD  V ++ +E+N+ADP TK LT K+F KHVE MG
Sbjct: 103 GDAKVLKIASEDNLADPFTKSLTQKIFDKHVEGMG 137


>OIT19646.1 retrovirus-related pol polyprotein from transposon tnt 1-94,
           partial [Nicotiana attenuata]
          Length = 133

 Score = 77.4 bits (189), Expect(2) = 2e-20
 Identities = 34/70 (48%), Positives = 48/70 (68%)
 Frame = +2

Query: 281 EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
           EY+ A EA KEA W++ F+ +L V  S+   I LYCDN+  +   KE R+HK+SKH+KRK
Sbjct: 28  EYVVASEAAKEAVWLRNFLKELNVFPSVQAPIVLYCDNSGAVANSKEPRSHKRSKHIKRK 87

Query: 461 CHIIKEILTR 490
            H+I++I  R
Sbjct: 88  YHLIRDITQR 97



 Score = 49.7 bits (117), Expect(2) = 2e-20
 Identities = 21/35 (60%), Positives = 27/35 (77%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMG 594
           GD  V ++ +E+N+ADPLTK LT K+F KHVE MG
Sbjct: 98  GDARVLKIASEDNLADPLTKSLTQKIFDKHVEGMG 132


>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score = 84.3 bits (207), Expect(2) = 2e-20
 Identities = 38/70 (54%), Positives = 50/70 (71%)
 Frame = +2

Query: 281  EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
            EYIAA EA KE  WI+ F+ +LGVV S    + LYCDNN  I Q KE R+H+KSKH+ R+
Sbjct: 1203 EYIAASEAAKEGVWIRNFIAELGVVPSASSPMDLYCDNNGAIAQAKEPRSHQKSKHILRR 1262

Query: 461  CHIIKEILTR 490
             H+I+E++ R
Sbjct: 1263 YHLIRELVDR 1272



 Score = 42.4 bits (98), Expect(2) = 2e-20
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = +1

Query: 490  GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMGFRY 603
            GDV + ++ T+ NVADPLTK LT    + H  A+G RY
Sbjct: 1273 GDVKICKIHTDLNVADPLTKPLTQPKHEAHTRAIGIRY 1310


>KYP68473.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 187

 Score = 89.4 bits (220), Expect(2) = 2e-20
 Identities = 41/70 (58%), Positives = 54/70 (77%)
 Frame = +2

Query: 281 EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
           EYIAA +A KEA W++KF+T+LGVV SI + I L CDNN  I Q KE R+H+KSKH+ R+
Sbjct: 75  EYIAASDAAKEAVWMKKFITELGVVPSIEEPISLLCDNNGAIAQAKEPRSHQKSKHILRR 134

Query: 461 CHIIKEILTR 490
            H+I+EI+ R
Sbjct: 135 YHLIREIIER 144



 Score = 37.4 bits (85), Expect(2) = 2e-20
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMGFRY 603
           GDV + +V  ++N ADP TK L  K F KH   +G +Y
Sbjct: 145 GDVKILKVDGKKNAADPFTKALGIKEFDKHKWEVGMKY 182


>OIT35913.1 retrovirus-related pol polyprotein from transposon tnt 1-94,
           partial [Nicotiana attenuata]
          Length = 138

 Score = 79.3 bits (194), Expect(2) = 2e-20
 Identities = 35/70 (50%), Positives = 50/70 (71%)
 Frame = +2

Query: 281 EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
           EY+AA EA KEA W++ F+ +L VV S+   I LYCDN+  +   KE R+HK+SKH++RK
Sbjct: 33  EYVAASEAAKEAVWLRNFLKELNVVPSVQAPIVLYCDNSGAVANSKEPRSHKRSKHIERK 92

Query: 461 CHIIKEILTR 490
            H+I++I  R
Sbjct: 93  YHLIRDITQR 102



 Score = 47.4 bits (111), Expect(2) = 2e-20
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMG 594
           GD  V ++ +E+N+ADP TK LT K+F KHVE MG
Sbjct: 103 GDARVLKIASEDNLADPFTKSLTRKIFHKHVERMG 137


>OIT19108.1 retrovirus-related pol polyprotein from transposon tnt 1-94,
           partial [Nicotiana attenuata]
          Length = 138

 Score = 78.6 bits (192), Expect(2) = 2e-20
 Identities = 35/70 (50%), Positives = 50/70 (71%)
 Frame = +2

Query: 281 EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
           EY+AA EAVKEA W++ F+ +L VV  +   I LYCDN+  +   KE R+HK+SKH++RK
Sbjct: 33  EYVAASEAVKEAVWLRNFLKELNVVPLVQAPIVLYCDNSGAVANSKEPRSHKRSKHIERK 92

Query: 461 CHIIKEILTR 490
            H+I++I  R
Sbjct: 93  YHLIRDITQR 102



 Score = 48.1 bits (113), Expect(2) = 2e-20
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMG 594
           GD  V ++ +E+N+ADP TK LT K+F KHVE MG
Sbjct: 103 GDARVLKIASEDNLADPFTKSLTQKIFDKHVEGMG 137


>OIT02540.1 retrovirus-related pol polyprotein from transposon tnt 1-94,
           partial [Nicotiana attenuata]
          Length = 129

 Score = 78.6 bits (192), Expect(2) = 2e-20
 Identities = 35/70 (50%), Positives = 50/70 (71%)
 Frame = +2

Query: 281 EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
           EY+AA EA KEA W++ F+ +L VV S+   I LYCDN+ V+   KE R+HK+SKH++ K
Sbjct: 24  EYVAASEAAKEAVWLRNFLKELNVVPSVQAAIVLYCDNSGVVANSKEPRSHKRSKHIECK 83

Query: 461 CHIIKEILTR 490
            H+I++I  R
Sbjct: 84  YHLIRDITQR 93



 Score = 48.1 bits (113), Expect(2) = 2e-20
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMG 594
           GD  V ++ +E+N+ADP TK LT K+F KHVE MG
Sbjct: 94  GDARVLKIASEDNLADPFTKSLTQKIFDKHVEGMG 128


>OIT20449.1 retrovirus-related pol polyprotein from transposon tnt 1-94,
           partial [Nicotiana attenuata]
          Length = 138

 Score = 79.3 bits (194), Expect(2) = 3e-20
 Identities = 35/70 (50%), Positives = 50/70 (71%)
 Frame = +2

Query: 281 EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
           EY+AA EA KEA W++ F+ +L VV S+   I LYCDN+  +   KE R+HK+SKH++RK
Sbjct: 33  EYVAASEAAKEAVWLRNFLKELNVVPSVQAPIVLYCDNSGAVANSKEPRSHKRSKHIERK 92

Query: 461 CHIIKEILTR 490
            H+I++I  R
Sbjct: 93  YHLIRDITQR 102



 Score = 47.0 bits (110), Expect(2) = 3e-20
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMG 594
           GD  V ++ +E+N+ADP TK LT K F KHVE MG
Sbjct: 103 GDARVLKIASEDNLADPFTKSLTQKTFDKHVEGMG 137


>AAD17357.1 contains similarity to retrovirus-related polyproteins [Arabidopsis
           thaliana] CAB77943.1 putative transposon protein
           [Arabidopsis thaliana]
          Length = 769

 Score = 89.0 bits (219), Expect(2) = 6e-20
 Identities = 40/68 (58%), Positives = 54/68 (79%)
 Frame = +2

Query: 287 IAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRKCH 466
           +AA +AVKEA WI+KF+T+L VV +I  LI LYCDNN  I Q KE R+H+KSKH++R+ H
Sbjct: 661 VAASKAVKEAVWIRKFITELSVVPNIPGLIDLYCDNNGAIAQTKERRSHQKSKHIQRRYH 720

Query: 467 IIKEILTR 490
           +I+EI+ R
Sbjct: 721 LIREIIDR 728



 Score = 36.2 bits (82), Expect(2) = 6e-20
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMGFRY 603
           GDV + RV T+ NV DP TK L     + H   +G R+
Sbjct: 729 GDVKISRVSTDANVTDPFTKPLPQPKHESHTTVIGIRF 766


>CAE02400.1 OSJNBa0024J22.4 [Oryza sativa Japonica Group] CAD40526.2
           OSJNBa0023J03.14 [Oryza sativa Japonica Group]
           CAH66059.1 OSIGBa0125J07.8 [Oryza sativa Indica Group]
           CAH66155.1 OSIGBa0113B06.1 [Oryza sativa Indica Group]
          Length = 704

 Score = 83.6 bits (205), Expect(2) = 6e-20
 Identities = 39/70 (55%), Positives = 52/70 (74%)
 Frame = +2

Query: 281 EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
           EYIAA EA KE  WI+KFV+ LGV++S    + LYCDN+  I Q KE R+H+KSKH+ R+
Sbjct: 594 EYIAASEAAKEVVWIKKFVSQLGVMTSTSRPMDLYCDNSGAIAQAKEPRSHQKSKHILRR 653

Query: 461 CHIIKEILTR 490
            H+I+EI+ R
Sbjct: 654 YHLIREIVGR 663



 Score = 41.6 bits (96), Expect(2) = 6e-20
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMGFRY 603
           GDV + ++ T+ NVADPLTK L     + H  AMG RY
Sbjct: 664 GDVKICKIHTDLNVADPLTKPLPQPKHEAHTRAMGIRY 701


>OIT05907.1 retrovirus-related pol polyprotein from transposon tnt 1-94,
           partial [Nicotiana attenuata]
          Length = 436

 Score = 77.0 bits (188), Expect(2) = 6e-20
 Identities = 33/70 (47%), Positives = 50/70 (71%)
 Frame = +2

Query: 281 EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
           EY+AA +  KEA W++ F+ +L VV S+   I LYCDN+  +   KE R+HK+SKH++RK
Sbjct: 331 EYVAASKPAKEAVWLKNFLKELNVVPSVQAPIVLYCDNSGAVANSKEPRSHKRSKHIERK 390

Query: 461 CHIIKEILTR 490
            H+I++I+ R
Sbjct: 391 YHLIRDIIQR 400



 Score = 48.1 bits (113), Expect(2) = 6e-20
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMG 594
           GD  V ++ +E+N+ADP TK LT K+F KHVE MG
Sbjct: 401 GDARVLKIASEDNLADPFTKSLTQKIFDKHVEGMG 435


>OIT21703.1 retrovirus-related pol polyprotein from transposon tnt 1-94,
           partial [Nicotiana attenuata]
          Length = 436

 Score = 77.4 bits (189), Expect(2) = 7e-20
 Identities = 34/70 (48%), Positives = 50/70 (71%)
 Frame = +2

Query: 281 EYIAALEAVKEATWIQKFVTDLGVVSSI*DLIPLYCDNNDVITQVKESRAHKKSKHVKRK 460
           EY+AA EA KEA W++ F+ +L VV S+   I LYC+N+  +   KE R+HK+SKH++RK
Sbjct: 331 EYVAASEAAKEAVWLRNFLKELNVVPSVKAPIVLYCNNSGAVANSKEPRSHKRSKHIERK 390

Query: 461 CHIIKEILTR 490
            H+I++I  R
Sbjct: 391 YHLIRDITQR 400



 Score = 47.4 bits (111), Expect(2) = 7e-20
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +1

Query: 490 GDVIVYRVQTEENVADPLTKGLTPKVFQKHVEAMG 594
           GD  V ++ +E+N+ADP TK LT K+F KHVE MG
Sbjct: 401 GDARVLKIASEDNLADPFTKRLTQKIFDKHVEGMG 435