BLASTX nr result
ID: Phellodendron21_contig00041875
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Phellodendron21_contig00041875
(357 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ADI49426.1 RNA-dependent RNA polymerase, partial [Grapevine leaf... 54 4e-06
AOS89854.1 polyprotein [Grapevine leafroll-associated virus 3] 54 4e-06
AOS89842.1 polyprotein [Grapevine leafroll-associated virus 3] 54 4e-06
AIW06637.1 replication associated protein 3 [Grapevine leafroll-... 54 4e-06
CDJ82925.1 RNA-dependent RNA polymerase domain containing protei... 54 5e-06
AAR31186.1 RNA-dependent RNA polymerase, partial [Grapevine leaf... 53 1e-05
AAC40705.3 RNA-dependent RNA polymerase, partial [Grapevine leaf... 53 1e-05
ADI49413.1 RNA-dependent RNA polymerase, partial [Grapevine leaf... 53 1e-05
>ADI49426.1 RNA-dependent RNA polymerase, partial [Grapevine
leafroll-associated virus 3]
Length = 541
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/108 (33%), Positives = 56/108 (51%)
Frame = +2
Query: 2 GDDSIVCTKQAGAYDKAVKILAEVFNLQAKTYITEAPYFASNFVVVNQSERSTALLPDPI 181
GDDS++ ++Q D +V L+E F K + APYF S F+V Q E S +PDP+
Sbjct: 366 GDDSLIFSRQPLDIDTSV--LSENFGFDVKIFNQAAPYFCSKFLV--QVEDSLFFVPDPL 421
Query: 182 KRIERWSMDVSTLDDTWEEKFISAVDVCSFYRYKMYTNPLSKLVIQRY 325
K ++ ++ D E F S VD+ + + L+KLV ++Y
Sbjct: 422 KLFVKFGASKTSDIDLLHEIFQSFVDLSKGFNREDVIQELAKLVTRKY 469
>AOS89854.1 polyprotein [Grapevine leafroll-associated virus 3]
Length = 2775
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/108 (33%), Positives = 56/108 (51%)
Frame = +2
Query: 2 GDDSIVCTKQAGAYDKAVKILAEVFNLQAKTYITEAPYFASNFVVVNQSERSTALLPDPI 181
GDDS++ ++Q D +V L+E F K + APYF S F+V Q E S +PDP+
Sbjct: 2600 GDDSLIFSRQPLDIDTSV--LSENFGFDVKIFNQAAPYFCSKFLV--QVEDSLFFVPDPL 2655
Query: 182 KRIERWSMDVSTLDDTWEEKFISAVDVCSFYRYKMYTNPLSKLVIQRY 325
K ++ ++ D E F S VD+ + + L+KLV ++Y
Sbjct: 2656 KLFVKFGASKTSDIDLLHEIFQSFVDLSKGFNREDVIQELAKLVTRKY 2703
>AOS89842.1 polyprotein [Grapevine leafroll-associated virus 3]
Length = 2775
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/108 (33%), Positives = 56/108 (51%)
Frame = +2
Query: 2 GDDSIVCTKQAGAYDKAVKILAEVFNLQAKTYITEAPYFASNFVVVNQSERSTALLPDPI 181
GDDS++ ++Q D +V L+E F K + APYF S F+V Q E S +PDP+
Sbjct: 2600 GDDSLIFSRQPLDIDTSV--LSENFGFDVKIFNQAAPYFCSKFLV--QVEDSLFFVPDPL 2655
Query: 182 KRIERWSMDVSTLDDTWEEKFISAVDVCSFYRYKMYTNPLSKLVIQRY 325
K ++ ++ D E F S VD+ + + L+KLV ++Y
Sbjct: 2656 KLFVKFGASKTSDIDLLHEIFQSFVDLSKGFNREDVIQELAKLVTRKY 2703
>AIW06637.1 replication associated protein 3 [Grapevine leafroll-associated virus
3]
Length = 2775
Score = 54.3 bits (129), Expect = 4e-06
Identities = 36/108 (33%), Positives = 56/108 (51%)
Frame = +2
Query: 2 GDDSIVCTKQAGAYDKAVKILAEVFNLQAKTYITEAPYFASNFVVVNQSERSTALLPDPI 181
GDDS++ ++Q D +V L+E F K + APYF S F+V Q E S +PDP+
Sbjct: 2600 GDDSLIFSRQPLDIDTSV--LSENFGFDVKIFNQAAPYFCSKFLV--QVEDSLFFVPDPL 2655
Query: 182 KRIERWSMDVSTLDDTWEEKFISAVDVCSFYRYKMYTNPLSKLVIQRY 325
K ++ ++ D E F S VD+ + + L+KLV ++Y
Sbjct: 2656 KLFVKFGASKTSDIDLLHEIFQSFVDLSKGFNREDVIQELAKLVTRKY 2703
>CDJ82925.1 RNA-dependent RNA polymerase domain containing protein [Haemonchus
contortus]
Length = 606
Score = 53.9 bits (128), Expect = 5e-06
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +2
Query: 2 GDDSIVCTKQAGAYDKAVKILAEVFNLQAKTYITEAPYFASNFVVVNQSERSTALLPDPI 181
GDDS++ + VK L+++FNL AK+ E YF S F++ ++ +PDP+
Sbjct: 509 GDDSLIFYADKRGDKQLVKNLSDIFNLSAKSIQKEVGYFCSTFII--ETADGYVPIPDPL 566
Query: 182 KRIERWSMDVSTLD-DTWEEKFISAVDVCS 268
KR+ER D+ +D +++FIS ++ S
Sbjct: 567 KRVERLGRDLCGVDKQGLKDRFISFAELIS 596
>AAR31186.1 RNA-dependent RNA polymerase, partial [Grapevine
leafroll-associated virus 3]
Length = 538
Score = 53.1 bits (126), Expect = 1e-05
Identities = 35/108 (32%), Positives = 56/108 (51%)
Frame = +2
Query: 2 GDDSIVCTKQAGAYDKAVKILAEVFNLQAKTYITEAPYFASNFVVVNQSERSTALLPDPI 181
GDDS++ ++Q D +V L++ F K + APYF S F+V Q E S +PDP+
Sbjct: 366 GDDSLIFSRQPLDIDTSV--LSDNFGFDVKIFNQAAPYFCSKFLV--QVEDSLFFVPDPL 421
Query: 182 KRIERWSMDVSTLDDTWEEKFISAVDVCSFYRYKMYTNPLSKLVIQRY 325
K ++ ++ D E F S VD+ + + L+KLV ++Y
Sbjct: 422 KLFVKFGASKTSDIDLLHEIFQSFVDLSKGFNREDVIQELAKLVTRKY 469
>AAC40705.3 RNA-dependent RNA polymerase, partial [Grapevine
leafroll-associated virus 3] ADM07405.1 RNA-dependent
RNA polymerase, partial [Grapevine leafroll-associated
virus 3] AFV73380.1 RNA-dependent RNA polymerase,
partial [Grapevine leafroll-associated virus 3]
Length = 538
Score = 53.1 bits (126), Expect = 1e-05
Identities = 35/108 (32%), Positives = 56/108 (51%)
Frame = +2
Query: 2 GDDSIVCTKQAGAYDKAVKILAEVFNLQAKTYITEAPYFASNFVVVNQSERSTALLPDPI 181
GDDS++ ++Q D +V L++ F K + APYF S F+V Q E S +PDP+
Sbjct: 366 GDDSLIFSRQPLDIDTSV--LSDNFGFDVKIFNQAAPYFCSKFLV--QVEDSLFFVPDPL 421
Query: 182 KRIERWSMDVSTLDDTWEEKFISAVDVCSFYRYKMYTNPLSKLVIQRY 325
K ++ ++ D E F S VD+ + + L+KLV ++Y
Sbjct: 422 KLFVKFGASKTSDIDLLHEIFQSFVDLSKGFNREDVIQELAKLVTRKY 469
>ADI49413.1 RNA-dependent RNA polymerase, partial [Grapevine
leafroll-associated virus 3]
Length = 541
Score = 53.1 bits (126), Expect = 1e-05
Identities = 35/108 (32%), Positives = 56/108 (51%)
Frame = +2
Query: 2 GDDSIVCTKQAGAYDKAVKILAEVFNLQAKTYITEAPYFASNFVVVNQSERSTALLPDPI 181
GDDS++ ++Q D +V L++ F K + APYF S F+V Q E S +PDP+
Sbjct: 366 GDDSLIFSRQPLDIDTSV--LSDNFGFDVKIFNQAAPYFCSKFLV--QVEDSLFFVPDPL 421
Query: 182 KRIERWSMDVSTLDDTWEEKFISAVDVCSFYRYKMYTNPLSKLVIQRY 325
K ++ ++ D E F S VD+ + + L+KLV ++Y
Sbjct: 422 KLFVKFGASKTSDIDLLHEIFQSFVDLSKGFNREDVIQELAKLVTRKY 469