BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Phellodendron21_contig00041156
         (823 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KYP48513.1 Retrovirus-related Pol polyprotein from transposon TN...   146   2e-61
KYP71220.1 Retrovirus-related Pol polyprotein from transposon TN...   146   2e-61
CAJ09951.2 putative gag-pol polyprotein [Citrus sinensis]             136   1e-56
OMO83367.1 Integrase, catalytic core [Corchorus capsularis]           137   4e-53
CAD41912.2 OSJNBa0033G05.13 [Oryza sativa Japonica Group]             131   1e-52
AAX92941.1 retrotransposon protein, putative, Ty1-copia sub-clas...   132   2e-52
BAF27642.2 Os11g0157000 [Oryza sativa Japonica Group]                 132   2e-52
BAH90873.1 Os01g0116166 [Oryza sativa Japonica Group]                 131   1e-51
KYP48029.1 Retrovirus-related Pol polyprotein from transposon TN...   149   2e-51
AAT85194.1 putative polyprotein [Oryza sativa Japonica Group]         129   2e-51
CAJ86151.1 H0413E07.4 [Oryza sativa Indica Group]                     127   1e-50
CAJ86192.1 H0306F03.15 [Oryza sativa Indica Group]                    127   1e-50
KYP37885.1 Retrovirus-related Pol polyprotein from transposon TN...   130   1e-50
KYP64657.1 Retrovirus-related Pol polyprotein from transposon TN...   127   1e-49
CAD40363.2 OSJNBa0093P23.9 [Oryza sativa Japonica Group]              132   1e-49
CAH66022.1 OSIGBa0105O19.1 [Oryza sativa Indica Group]                132   1e-49
ABA97637.1 retrotransposon protein, putative, Ty1-copia subclass...   126   3e-49
AAK52561.1 Putative retroelement pol polyprotein [Oryza sativa J...   125   9e-48
AAL31093.1 putative retrotransposon-related protein [Oryza sativ...   126   9e-48
AAT01387.1 putative polyprotein [Oryza sativa Japonica Group] AA...   127   2e-47

>KYP48513.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1032

 Score =  146 bits (369), Expect(3) = 2e-61
 Identities = 62/122 (50%), Positives = 88/122 (72%)
 Frame = -1

Query: 448 QNGVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNK 269
           + G+LG+  +  ++FCE C+ GKQ+RVSF T  H  K  L+Y+H DLWGP+KV ++GG +
Sbjct: 142 KQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGCR 201

Query: 268 YFISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFD 89
           Y ++I+D  SRK WV+ L+ +NE    FK+WKTL + Q  K+VK LRTDNGLEFC  +F+
Sbjct: 202 YMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFN 261

Query: 88  KF 83
           +F
Sbjct: 262 EF 263



 Score =  108 bits (269), Expect(3) = 2e-61
 Identities = 54/129 (41%), Positives = 80/129 (62%)
 Frame = -2

Query: 816 VYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQNG 637
           V MGN+  CK+ GIG I +K HD  ++ L++VRFIP LKRNLISL +L+ L   Y  + G
Sbjct: 19  VLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGG 78

Query: 636 KLNILKDKDIILTNIKRNGLYILNGSHTFSKLVNTTLVTTQNKTNLWHLRLCHIGKKGL* 457
            L + K   ++L   +   LYIL GS        ++ ++ ++ T LWH+RL H+ +KG+ 
Sbjct: 79  VLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMH 138

Query: 456 VLNKMGYLG 430
           +L+K G LG
Sbjct: 139 LLSKQGLLG 147



 Score = 31.6 bits (70), Expect(3) = 2e-61
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 72  HGIMRHKIVRNTT*QNGAAERMNK 1
           HGI RHK +     QNG AER+N+
Sbjct: 267 HGIARHKTIPGKPQQNGVAERLNR 290


>KYP71220.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 690

 Score =  146 bits (369), Expect(3) = 2e-61
 Identities = 62/122 (50%), Positives = 88/122 (72%)
 Frame = -1

Query: 448 QNGVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNK 269
           + G+LG+  +  ++FCE C+ GKQ+RVSF T  H  K  L+Y+H DLWGP+KV ++GG +
Sbjct: 438 KQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGGCR 497

Query: 268 YFISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFD 89
           Y ++I+D  SRK WV+ L+ +NE    FK+WKTL + Q  K+VK LRTDNGLEFC  +F+
Sbjct: 498 YMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFN 557

Query: 88  KF 83
           +F
Sbjct: 558 EF 559



 Score =  108 bits (269), Expect(3) = 2e-61
 Identities = 54/129 (41%), Positives = 80/129 (62%)
 Frame = -2

Query: 816 VYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQNG 637
           V MGN+  CK+ GIG I +K HD  ++ L++VRFIP LKRNLISL +L+ L   Y  + G
Sbjct: 315 VLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGG 374

Query: 636 KLNILKDKDIILTNIKRNGLYILNGSHTFSKLVNTTLVTTQNKTNLWHLRLCHIGKKGL* 457
            L + K   ++L   +   LYIL GS        ++ ++ ++ T LWH+RL H+ +KG+ 
Sbjct: 375 VLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMH 434

Query: 456 VLNKMGYLG 430
           +L+K G LG
Sbjct: 435 LLSKQGLLG 443



 Score = 31.6 bits (70), Expect(3) = 2e-61
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 72  HGIMRHKIVRNTT*QNGAAERMNK 1
           HGI RHK +     QNG AER+N+
Sbjct: 563 HGIARHKTIPGKPQQNGVAERLNR 586


>CAJ09951.2 putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  136 bits (343), Expect(3) = 1e-56
 Identities = 57/125 (45%), Positives = 90/125 (72%)
 Frame = -1

Query: 448 QNGVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNK 269
           + G+LG  ++  ++FCE CI GK  R  F    H++K  L+Y H D WGPA+V +  G +
Sbjct: 443 KQGLLGGDRIQQLEFCENCIFGKSHRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGR 502

Query: 268 YFISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFD 89
           YF+S++D +SRK W+++LK +++AL+KFK WK+L +NQ + ++K LRTDNGLEFC+  F+
Sbjct: 503 YFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFE 562

Query: 88  KFYKK 74
           ++ +K
Sbjct: 563 EYCQK 567



 Score = 94.7 bits (234), Expect(3) = 1e-56
 Identities = 54/130 (41%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
 Frame = -2

Query: 816 VYMGNNYICKVLGIGDITL-KLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQN 640
           V MGNN +C ++GI      +     LR L +VR  P LKRNLISL  LD L + +K++ 
Sbjct: 320 VLMGNNNVCNIVGIWFCKRSRCLMELLRSLHEVRHAPRLKRNLISLGMLDSLGYFFKSRI 379

Query: 639 GKLNILKDKDIILTNIKRNGLYILNGSHTFSKLVNTTLVTTQNKTNLWHLRLCHIGKKGL 460
           G L + K  +I++  +  NGLY+L GS +       + V+ +++T LWHLRL H+  KGL
Sbjct: 380 GGLEVRKGTEIVMKGVNENGLYVLQGS-SVPVQEGVSAVSEEDRTKLWHLRLGHMSIKGL 438

Query: 459 *VLNKMGYLG 430
             L+K G LG
Sbjct: 439 QELSKQGLLG 448



 Score = 38.9 bits (89), Expect(3) = 1e-56
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           +KHGI RHK VR T  QNG AERMN+
Sbjct: 566 QKHGIKRHKTVRFTPQQNGLAERMNR 591


>OMO83367.1 Integrase, catalytic core [Corchorus capsularis]
          Length = 785

 Score =  137 bits (346), Expect(3) = 4e-53
 Identities = 58/125 (46%), Positives = 86/125 (68%)
 Frame = -1

Query: 448 QNGVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNK 269
           + G+L   +   +  CETC++GKQR V F +  H +K  L+Y+H DLWGPA V +H   +
Sbjct: 419 KRGLLDGSECGKLKCCETCVLGKQRGVKFSSGKHTSKGILDYVHSDLWGPAPVESHSRCR 478

Query: 268 YFISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFD 89
           YF++ +D +S+K WV+ LKT++E  D FKEWK + +   ++++K LRTDNGLEFC  EF+
Sbjct: 479 YFVTFIDDYSKKVWVYFLKTKDELFDWFKEWKIMIEKHTSRQIKTLRTDNGLEFCGQEFN 538

Query: 88  KFYKK 74
           +F KK
Sbjct: 539 EFCKK 543



 Score = 83.2 bits (204), Expect(3) = 4e-53
 Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
 Frame = -2

Query: 819 TVYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQN 640
           +V +G+     V G G + +K HD  +R   D   +P L RNLISL +LDK  + Y  +N
Sbjct: 296 SVMLGDKTTLTVKGSGSVQIKTHDGTIRTF-DAWLVPEL-RNLISLGTLDKQGYKYSGEN 353

Query: 639 GKLNILKDKDIILTNIKRNGLYILNGSHTFSKL-VNTTLVTTQNKTNLWHLRLCHIGKKG 463
           G++ + K    IL    ++G+Y L G+    ++ V+ +L  + ++T LWHLRL H+ ++G
Sbjct: 354 GQIKVSKGAMTILKGKLQHGIYTLIGNSVIGEVAVSESLGDSNDRTELWHLRLGHMSEQG 413

Query: 462 L*VLNKMGYL 433
           L +L+K G L
Sbjct: 414 LSILSKRGLL 423



 Score = 37.4 bits (85), Expect(3) = 4e-53
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           KK GI+RH  VR T  QNG AERMN+
Sbjct: 542 KKEGILRHHTVRRTPQQNGVAERMNQ 567


>CAD41912.2 OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  131 bits (330), Expect(3) = 1e-52
 Identities = 57/124 (45%), Positives = 83/124 (66%)
 Frame = -1

Query: 448 QNGVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNK 269
           + G+L    +S + FCE CI GK +RV F T  H  +  L+Y+H DLWGPA+  + GG +
Sbjct: 453 KRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGAR 512

Query: 268 YFISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFD 89
           Y ++IVD +SRK W + LK + +A + FKEWKT+ + Q  ++VK+LRTDNG+EFC+  F 
Sbjct: 513 YMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFK 572

Query: 88  KFYK 77
            + K
Sbjct: 573 SYCK 576



 Score = 92.0 bits (227), Expect(3) = 1e-52
 Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 2/131 (1%)
 Frame = -2

Query: 819 TVYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQN 640
           TV MG++  C+V GIG + +K+ D  +R L+DVR IP LKR+LISL +LD+  + Y   +
Sbjct: 327 TVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGD 386

Query: 639 GKLNILKDKDIIL-TNIKRNGLYILNGSHTFSKLVNTT-LVTTQNKTNLWHLRLCHIGKK 466
           G L + K   +++  +IK   LY L G+     +   +  ++  + TNLWH+RL H+ + 
Sbjct: 387 GILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEI 446

Query: 465 GL*VLNKMGYL 433
           GL  L+K G L
Sbjct: 447 GLAELSKRGLL 457



 Score = 32.7 bits (73), Expect(3) = 1e-52
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           K  GI+RH  V +T  QNG AERMN+
Sbjct: 576 KSEGIVRHYTVPHTPQQNGVAERMNR 601


>AAX92941.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] ABA91548.1 retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 2340

 Score =  132 bits (333), Expect(3) = 2e-52
 Identities = 57/124 (45%), Positives = 82/124 (66%)
 Frame = -1

Query: 448  QNGVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNK 269
            + G+L    +  + FCE CI GK +RV F T  H  +  L+Y+H DLWGPA+  + GG +
Sbjct: 660  KRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTR 719

Query: 268  YFISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFD 89
            Y ++IVD +SRK W + LK + +A D FKEWKT+ + Q  ++VK+LRTDNG+EFC+  F 
Sbjct: 720  YMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFK 779

Query: 88   KFYK 77
             + K
Sbjct: 780  SYCK 783



 Score = 90.5 bits (223), Expect(3) = 2e-52
 Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 2/131 (1%)
 Frame = -2

Query: 819 TVYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQN 640
           TV MG++  C+V GIG + +K+ D  +R L+DVR IP LKR+LISL +LD+  + Y   +
Sbjct: 534 TVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGD 593

Query: 639 GKLNILKDKDIIL-TNIKRNGLYILNGSHTFSKLVNTT-LVTTQNKTNLWHLRLCHIGKK 466
           G L + K   +++  +IK   LY L G+     +   +  ++  + TNLWH+RL H+ + 
Sbjct: 594 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEI 653

Query: 465 GL*VLNKMGYL 433
           GL  L+K G L
Sbjct: 654 GLAELSKRGLL 664



 Score = 32.7 bits (73), Expect(3) = 2e-52
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           K  GI+RH  V +T  QNG AERMN+
Sbjct: 783 KSEGIVRHYTVPHTPQQNGVAERMNR 808


>BAF27642.2 Os11g0157000 [Oryza sativa Japonica Group]
          Length = 1601

 Score =  132 bits (333), Expect(3) = 2e-52
 Identities = 57/124 (45%), Positives = 82/124 (66%)
 Frame = -1

Query: 448 QNGVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNK 269
           + G+L    +  + FCE CI GK +RV F T  H  +  L+Y+H DLWGPA+  + GG +
Sbjct: 453 KRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTR 512

Query: 268 YFISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFD 89
           Y ++IVD +SRK W + LK + +A D FKEWKT+ + Q  ++VK+LRTDNG+EFC+  F 
Sbjct: 513 YMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFK 572

Query: 88  KFYK 77
            + K
Sbjct: 573 SYCK 576



 Score = 90.5 bits (223), Expect(3) = 2e-52
 Identities = 51/131 (38%), Positives = 79/131 (60%), Gaps = 2/131 (1%)
 Frame = -2

Query: 819 TVYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQN 640
           TV MG++  C+V GIG + +K+ D  +R L+DVR IP LKR+LISL +LD+  + Y   +
Sbjct: 327 TVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGD 386

Query: 639 GKLNILKDKDIIL-TNIKRNGLYILNGSHTFSKLVNTT-LVTTQNKTNLWHLRLCHIGKK 466
           G L + K   +++  +IK   LY L G+     +   +  ++  + TNLWH+RL H+ + 
Sbjct: 387 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEI 446

Query: 465 GL*VLNKMGYL 433
           GL  L+K G L
Sbjct: 447 GLAELSKRGLL 457



 Score = 32.7 bits (73), Expect(3) = 2e-52
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           K  GI+RH  V +T  QNG AERMN+
Sbjct: 576 KSEGIVRHYTVPHTPQQNGVAERMNR 601


>BAH90873.1 Os01g0116166 [Oryza sativa Japonica Group]
          Length = 778

 Score =  131 bits (329), Expect(3) = 1e-51
 Identities = 57/124 (45%), Positives = 82/124 (66%)
 Frame = -1

Query: 448 QNGVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNK 269
           + G+L    +  + FCE CI GK +RV F T  H  +  L+Y+H DLWGPA+  + GG +
Sbjct: 419 KRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGAR 478

Query: 268 YFISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFD 89
           Y ++IVD +SRK W + LK + +A D FKEWKT+ + Q  ++VK+LRTDNG+EFC+  F 
Sbjct: 479 YIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFK 538

Query: 88  KFYK 77
            + K
Sbjct: 539 SYCK 542



 Score = 89.7 bits (221), Expect(3) = 1e-51
 Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
 Frame = -2

Query: 819 TVYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQN 640
           TV MG++  C+V GIG + +K+ D  +R L+DVR IP LKR+LIS  +LD+  + Y   +
Sbjct: 293 TVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISFCTLDRKGYKYSGGD 352

Query: 639 GKLNILKDKDIIL-TNIKRNGLYILNGSHTFSKLVNTT-LVTTQNKTNLWHLRLCHIGKK 466
           G L + K   +++  +IK   LY L G+     +   +  ++  + TNLWH+RL H+ + 
Sbjct: 353 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEI 412

Query: 465 GL*VLNKMGYL 433
           GL  L+K G L
Sbjct: 413 GLAELSKRGLL 423



 Score = 32.3 bits (72), Expect(3) = 1e-51
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           K  GI+RH  + +T  QNG AERMN+
Sbjct: 542 KSEGIVRHYTIPHTPQQNGVAERMNR 567


>KYP48029.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 634

 Score =  149 bits (377), Expect(3) = 2e-51
 Identities = 62/125 (49%), Positives = 88/125 (70%)
 Frame = -1

Query: 448 QNGVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNK 269
           + GV G  K+  ++FCE C++GK  R+ F T  H +   L+Y+H DLWGP++  +HGG +
Sbjct: 99  KQGVFGRDKIEPLEFCEHCVMGKASRLKFSTSTHSSGGVLDYVHSDLWGPSRTESHGGAR 158

Query: 268 YFISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFD 89
           YF+SIVD  SRK WV+ LK +NE  D+FKEWK L + Q  + +K LRTDNGLEFC+++F 
Sbjct: 159 YFLSIVDDFSRKVWVYFLKQKNEVFDRFKEWKVLVETQTGRNLKKLRTDNGLEFCDEKFS 218

Query: 88  KFYKK 74
           KF ++
Sbjct: 219 KFCRE 223



 Score = 70.9 bits (172), Expect(3) = 2e-51
 Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
 Frame = -2

Query: 723 VRFIPALKRNLISLSSLDKLRFSYKTQNGKLNILKDKDIILTNIKRNGLYI-LNGSHTFS 547
           VR +P LKRNLISL +LD+  ++YK   G L + K   +IL  +++N LY  L G    +
Sbjct: 1   VRHVPELKRNLISLGTLDQGGYAYKCDQGSLRVFKGSLVILKGVRKNWLYYSLVGQTVVA 60

Query: 546 KLVN-----TTLVTTQNKTNLWHLRLCHIGKKGL*VLNKMGYLGTAK 421
           +  N        +T+   T LWH RL H+ ++GL  L K G  G  K
Sbjct: 61  RSSNVIGSSNATITSDVATKLWHHRLGHVSQRGLDELAKQGVFGRDK 107



 Score = 32.3 bits (72), Expect(3) = 2e-51
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           +++G+ RHK VR T  +NG AER N+
Sbjct: 222 RENGVARHKTVRGTPQKNGLAERFNR 247


>AAT85194.1 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  129 bits (325), Expect(3) = 2e-51
 Identities = 56/124 (45%), Positives = 81/124 (65%)
 Frame = -1

Query: 448 QNGVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNK 269
           + G+L    +  + FCE CI GK +RV F T  H  +  L+Y+H DLWGPA+  + GG +
Sbjct: 362 KRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGAR 421

Query: 268 YFISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFD 89
           Y ++IVD +SRK W + LK + +A D FKEWKT+ + Q  ++VK+LRTDNG+E C+  F 
Sbjct: 422 YMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFK 481

Query: 88  KFYK 77
            + K
Sbjct: 482 SYCK 485



 Score = 90.1 bits (222), Expect(3) = 2e-51
 Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
 Frame = -2

Query: 819 TVYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQN 640
           TV MG++  C+V GIG + +K+ D  +R L DVR IP LKR+LISL +LD+  + Y   +
Sbjct: 236 TVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGD 295

Query: 639 GKLNILKDKDIIL-TNIKRNGLYILNGSHTFSKLVNTT-LVTTQNKTNLWHLRLCHIGKK 466
           G L + K   +++  +IK   LY L G+     +   +  ++  + TNLWH+RL H+ + 
Sbjct: 296 GILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEI 355

Query: 465 GL*VLNKMGYL 433
           GL  L+K G L
Sbjct: 356 GLAELSKRGLL 366



 Score = 32.7 bits (73), Expect(3) = 2e-51
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           K  GI+RH  V +T  QNG AERMN+
Sbjct: 485 KSEGIVRHYTVPHTPQQNGVAERMNR 510


>CAJ86151.1 H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  127 bits (320), Expect(3) = 1e-50
 Identities = 55/122 (45%), Positives = 81/122 (66%)
 Frame = -1

Query: 442 GVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNKYF 263
           G+L    +  + FCE CI GK +RV F T  H  +  L+Y+H DLWGPA+  + GG +Y 
Sbjct: 440 GLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYM 499

Query: 262 ISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFDKF 83
           ++IV+ +SRK W + LK + +A + FKEWKT+ + Q  ++VK+LRTDNG+EFC+  F  +
Sbjct: 500 MTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSY 559

Query: 82  YK 77
            K
Sbjct: 560 CK 561



 Score = 87.8 bits (216), Expect(3) = 1e-50
 Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 2/131 (1%)
 Frame = -2

Query: 819 TVYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQN 640
           TV MG++  C+V GIG + +K+ D  +R L+DVR IP LKR+LISL +LD   + Y   +
Sbjct: 312 TVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGD 371

Query: 639 GKLNILKDKDIIL-TNIKRNGLYILNGSHTFSKLVNTT-LVTTQNKTNLWHLRLCHIGKK 466
           G L + K   +++  +IK   LY L G+     +   +  ++  + TNLWH+RL H+ + 
Sbjct: 372 GILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEI 431

Query: 465 GL*VLNKMGYL 433
           GL  L+  G L
Sbjct: 432 GLAELSMRGLL 442



 Score = 34.3 bits (77), Expect(3) = 1e-50
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           K  GIMRH  V +T  QNG AERMN+
Sbjct: 561 KSEGIMRHYTVPHTPQQNGVAERMNR 586


>CAJ86192.1 H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  127 bits (320), Expect(3) = 1e-50
 Identities = 55/122 (45%), Positives = 81/122 (66%)
 Frame = -1

Query: 442 GVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNKYF 263
           G+L    +  + FCE CI GK +RV F T  H  +  L+Y+H DLWGPA+  + GG +Y 
Sbjct: 272 GLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYM 331

Query: 262 ISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFDKF 83
           ++IV+ +SRK W + LK + +A + FKEWKT+ + Q  ++VK+LRTDNG+EFC+  F  +
Sbjct: 332 MTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSY 391

Query: 82  YK 77
            K
Sbjct: 392 CK 393



 Score = 87.8 bits (216), Expect(3) = 1e-50
 Identities = 50/131 (38%), Positives = 77/131 (58%), Gaps = 2/131 (1%)
 Frame = -2

Query: 819 TVYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQN 640
           TV MG++  C+V GIG + +K+ D  +R L+DVR IP LKR+LISL +LD   + Y   +
Sbjct: 144 TVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGD 203

Query: 639 GKLNILKDKDIIL-TNIKRNGLYILNGSHTFSKLVNTT-LVTTQNKTNLWHLRLCHIGKK 466
           G L + K   +++  +IK   LY L G+     +   +  ++  + TNLWH+RL H+ + 
Sbjct: 204 GILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEI 263

Query: 465 GL*VLNKMGYL 433
           GL  L+  G L
Sbjct: 264 GLAELSMRGLL 274



 Score = 34.3 bits (77), Expect(3) = 1e-50
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           K  GIMRH  V +T  QNG AERMN+
Sbjct: 393 KSEGIMRHYTVPHTPQQNGVAERMNR 418


>KYP37885.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 464

 Score =  130 bits (328), Expect(3) = 1e-50
 Identities = 57/124 (45%), Positives = 80/124 (64%)
 Frame = -1

Query: 448 QNGVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNK 269
           + G+L       +DFCE C+ GKQ R  FP   H  K  L+Y+H D+WGP K  + GG +
Sbjct: 108 KQGLLKGTNYEKLDFCEHCLYGKQERAKFPASTHNTKGILDYVHSDIWGPTKTQSIGGVR 167

Query: 268 YFISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFD 89
           Y+IS +D  S K W++LL  +N+A   FK+WK L + Q+ K+VKVL  DNGLE+ +DEF+
Sbjct: 168 YYISFIDDWSTKMWIYLLNHKNQAFKIFKQWKALVETQIGKQVKVLSIDNGLEYLSDEFN 227

Query: 88  KFYK 77
           +F K
Sbjct: 228 EFCK 231



 Score = 89.7 bits (221), Expect(3) = 1e-50
 Identities = 51/126 (40%), Positives = 71/126 (56%)
 Frame = -2

Query: 810 MGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQNGKL 631
           MGN+  CKV GIG + +K +D  ++V T VR +P LKRNLISL  L      +  ++  +
Sbjct: 1   MGNDIACKVAGIGTVRIKFNDGSVKVSTKVRHVPELKRNLISLGML-----VFNGESDAI 55

Query: 630 NILKDKDIILTNIKRNGLYILNGSHTFSKLVNTTLVTTQNKTNLWHLRLCHIGKKGL*VL 451
            I +    I+  I+++GLY L G          T+V + N   LWHLRL HI +KGL  L
Sbjct: 56  VIKRGSKQIMKGIRKDGLYRLQGK---------TIVNSANSIRLWHLRLSHISEKGLEEL 106

Query: 450 NKMGYL 433
           +K G L
Sbjct: 107 HKQGLL 112



 Score = 29.3 bits (64), Expect(3) = 1e-50
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           K +GI RHK +R    QNG AE MN+
Sbjct: 231 KDNGITRHKTIRVHPQQNGLAEIMNR 256


>KYP64657.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 259

 Score =  127 bits (319), Expect(2) = 1e-49
 Identities = 52/108 (48%), Positives = 79/108 (73%)
 Frame = -1

Query: 406 FCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNKYFISIVDYHSRKAW 227
           FCE C++GK  +V F T +H++    EY+H DLWGP++V T GG  YF++IVD  +R+ W
Sbjct: 149 FCEHCVLGKSHKVKFGTGIHVSSRPFEYVHADLWGPSRVKTPGGGSYFLTIVDDFTRRMW 208

Query: 226 VHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFDKF 83
           +++LK + E   KFK+W TL +NQ+  ++K+LRTDNGLEF +++F +F
Sbjct: 209 LYVLKDKTETYKKFKDWNTLIQNQLETKLKILRTDNGLEFLSEQFAEF 256



 Score = 98.6 bits (244), Expect(2) = 1e-49
 Identities = 52/123 (42%), Positives = 81/123 (65%), Gaps = 3/123 (2%)
 Frame = -2

Query: 819 TVYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQN 640
           TV +G+++ C+V GIG + LK+ D++  +L DVR++P LKRNLIS+S  D L ++ KTQ+
Sbjct: 26  TVLLGDDHPCQVQGIGTVRLKMFDNREYILKDVRYVPDLKRNLISISMFDSLGYATKTQH 85

Query: 639 GKLNILKDKDIIL--TNIKRNGLYILNGSHTFSKLVNTTLVTTQ-NKTNLWHLRLCHIGK 469
           G L IL    +I      K NGL++L+GS   + + + ++     +KT LWHLRL H+ +
Sbjct: 86  GVLKILNGSLVIAKGNKDKNNGLFVLDGS---TVMAHASIARNDIDKTKLWHLRLGHVSE 142

Query: 468 KGL 460
           +GL
Sbjct: 143 RGL 145


>CAD40363.2 OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  132 bits (331), Expect(3) = 1e-49
 Identities = 57/124 (45%), Positives = 82/124 (66%)
 Frame = -1

Query: 448 QNGVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNK 269
           + G+L    +  + FCE CI GK +RV F T  H  +  L+Y+H DLWGPA+  + GG +
Sbjct: 285 KRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGAR 344

Query: 268 YFISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFD 89
           Y ++IVD +SRK W + LK + +A D FKEWKT+ + Q  ++VK+LRTDNG+EFC+  F 
Sbjct: 345 YIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFK 404

Query: 88  KFYK 77
            + K
Sbjct: 405 SYCK 408



 Score = 88.2 bits (217), Expect(3) = 1e-49
 Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
 Frame = -2

Query: 819 TVYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQN 640
           TV MG++  C+V GIG + +K+ D  +  L+DVR IP LKR+LISL +LD+  + Y   +
Sbjct: 159 TVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGD 218

Query: 639 GKLNILKDKDIIL-TNIKRNGLYILNGSHTFSKLVNTT-LVTTQNKTNLWHLRLCHIGKK 466
           G L + K   +++  +IK   LY L G+     +   +  ++  + TNLWH+RL H+ + 
Sbjct: 219 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEI 278

Query: 465 GL*VLNKMGYL 433
           GL  L+K G L
Sbjct: 279 GLAELSKRGLL 289



 Score = 26.2 bits (56), Expect(3) = 1e-49
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           K  GI+RH     T  QNG AERMN+
Sbjct: 408 KSEGIVRHY----TPQQNGVAERMNR 429


>CAH66022.1 OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  132 bits (331), Expect(3) = 1e-49
 Identities = 57/124 (45%), Positives = 82/124 (66%)
 Frame = -1

Query: 448 QNGVLGHGKVSDIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNK 269
           + G+L    +  + FCE CI GK +RV F T  H  +  L+Y+H DLWGPA+  + GG +
Sbjct: 285 KRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGAR 344

Query: 268 YFISIVDYHSRKAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFD 89
           Y ++IVD +SRK W + LK + +A D FKEWKT+ + Q  ++VK+LRTDNG+EFC+  F 
Sbjct: 345 YIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFK 404

Query: 88  KFYK 77
            + K
Sbjct: 405 SYCK 408



 Score = 88.2 bits (217), Expect(3) = 1e-49
 Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
 Frame = -2

Query: 819 TVYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQN 640
           TV MG++  C+V GIG + +K+ D  +  L+DVR IP LKR+LISL +LD+  + Y   +
Sbjct: 159 TVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGD 218

Query: 639 GKLNILKDKDIIL-TNIKRNGLYILNGSHTFSKLVNTT-LVTTQNKTNLWHLRLCHIGKK 466
           G L + K   +++  +IK   LY L G+     +   +  ++  + TNLWH+RL H+ + 
Sbjct: 219 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEI 278

Query: 465 GL*VLNKMGYL 433
           GL  L+K G L
Sbjct: 279 GLAELSKRGLL 289



 Score = 26.2 bits (56), Expect(3) = 1e-49
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           K  GI+RH     T  QNG AERMN+
Sbjct: 408 KSEGIVRHY----TPQQNGVAERMNR 429


>ABA97637.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  126 bits (317), Expect(3) = 3e-49
 Identities = 54/114 (47%), Positives = 77/114 (67%)
 Frame = -1

Query: 415 DIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNKYFISIVDYHSR 236
           ++ FCE C+ GK +RV F T VH  K  L+Y+H DLWGP++  + GG +Y ++I+D +SR
Sbjct: 457 NMKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSR 516

Query: 235 KAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFDKFYKK 74
           K W + LK +++    FKEWK + + Q  K VKVLRTDN  EFC+D FD + +K
Sbjct: 517 KVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRK 570



 Score = 86.3 bits (212), Expect(3) = 3e-49
 Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
 Frame = -2

Query: 816 VYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQNG 637
           V MGN+   +++GIG + +K HD   R L DVR IP + RNLISLS+LD   + Y    G
Sbjct: 321 VRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGG 380

Query: 636 KLNILKDKDI-ILTNIKRNGLYILNGSHTFSKLVNTTLVTTQ--NKTNLWHLRLCHIGKK 466
            + + K   + ++ ++    LY+L GS T    V    VT    NKTNLWH+RL H+ + 
Sbjct: 381 VVKVSKGSLVYMIGDMNSANLYVLRGS-TLHGSVTAAAVTKDEPNKTNLWHMRLGHMSEL 439

Query: 465 GL*VLNKMGYL 433
           G+  L K   L
Sbjct: 440 GMAELMKRNLL 450



 Score = 32.3 bits (72), Expect(3) = 3e-49
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           +K GI+RH  +  T  QNG AERMN+
Sbjct: 569 RKEGIVRHHTIPYTPQQNGVAERMNR 594


>AAK52561.1 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
           ABF96427.1 retrotransposon protein, putative, Ty1-copia
           subclass [Oryza sativa Japonica Group]
          Length = 1326

 Score =  125 bits (314), Expect(3) = 9e-48
 Identities = 55/111 (49%), Positives = 74/111 (66%)
 Frame = -1

Query: 406 FCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNKYFISIVDYHSRKAW 227
           FCE C+ GK +RV F T VH  K  L+Y+H DLWGP++    GG +Y ++I+D +SRK W
Sbjct: 460 FCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVW 519

Query: 226 VHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFDKFYKK 74
            + LK +++    FKEWK   + Q  K VKVLRTDNG EFC+D FD + +K
Sbjct: 520 PYFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFDDYCRK 570



 Score = 82.4 bits (202), Expect(3) = 9e-48
 Identities = 49/131 (37%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
 Frame = -2

Query: 816 VYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQNG 637
           V MG++   +++GIG + +K HD   R L DVR IP + RNLISLS+LD   + Y +  G
Sbjct: 321 VRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGG 380

Query: 636 KLNILKDKDI-ILTNIKRNGLYILNGSHTFSKLVNTTLVTTQN--KTNLWHLRLCHIGKK 466
            + + K   + ++ ++    LY+L GS T    V    V+     KTNLWH+RL H+ + 
Sbjct: 381 VVKVSKGSLVYMIGDMNSANLYVLRGS-TLHGSVTAAAVSKDEPIKTNLWHMRLGHMSEL 439

Query: 465 GL*VLNKMGYL 433
           G+  L K   L
Sbjct: 440 GMAELMKRNLL 450



 Score = 32.3 bits (72), Expect(3) = 9e-48
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           +K GI+RH  +  T  QNG AERMN+
Sbjct: 569 RKEGIVRHHTIPYTPQQNGVAERMNR 594


>AAL31093.1 putative retrotransposon-related protein [Oryza sativa Japonica
           Group] AAN04164.1 Putative retrotransposon protein
           [Oryza sativa Japonica Group] AAP53029.1 retrotransposon
           protein, putative, Ty1-copia subclass, expressed [Oryza
           sativa Japonica Group]
          Length = 1229

 Score =  126 bits (317), Expect(3) = 9e-48
 Identities = 55/114 (48%), Positives = 77/114 (67%)
 Frame = -1

Query: 415 DIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNKYFISIVDYHSR 236
           ++ FCE C+ GK +RV F T VH  K  L+Y+H DLWGP++  + GG  Y ++I+D +SR
Sbjct: 454 NMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYSR 513

Query: 235 KAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFDKFYKK 74
           K W + LK +++    FKEWK + + Q  K VKVLRTDNG EFC+D FD + +K
Sbjct: 514 KVWPYFLKHKDDTFAAFKEWKVMIERQAEKEVKVLRTDNGGEFCSDAFDDYCRK 567



 Score = 85.1 bits (209), Expect(3) = 9e-48
 Identities = 48/130 (36%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
 Frame = -2

Query: 816 VYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQNG 637
           V MG+N   +++GIG + +K HD   R L DVR IP + RNLISLS+LD   + Y    G
Sbjct: 318 VRMGDNNPREIMGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGG 377

Query: 636 KLNILKDKDI-ILTNIKRNGLYILNGSHTFSKLVNTTLVTTQ-NKTNLWHLRLCHIGKKG 463
            + + K   + ++ ++    LY+L GS     L    +   + +KTNLWH+RL H+ + G
Sbjct: 378 VVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSLTAAAVSKDEPSKTNLWHMRLGHMSELG 437

Query: 462 L*VLNKMGYL 433
           +  L K   L
Sbjct: 438 MAELMKRNLL 447



 Score = 28.5 bits (62), Expect(3) = 9e-48
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           +K GI RH  +  T  QN  AERMN+
Sbjct: 566 RKEGIGRHHTIPYTPQQNSVAERMNR 591


>AAT01387.1 putative polyprotein [Oryza sativa Japonica Group] AAT44170.1
           putative polyprotein [Oryza sativa Japonica Group]
          Length = 1175

 Score =  127 bits (320), Expect(3) = 2e-47
 Identities = 57/121 (47%), Positives = 79/121 (65%), Gaps = 3/121 (2%)
 Frame = -1

Query: 415 DIDFCETCIIGKQRRVSFPTIVHLAKACLEYLHYDLWGPAKVHTHGGNKYFISIVDYHSR 236
           ++ FCE C+ GK +RV F T VH  K  L+Y+H DLWGP++  + GG +Y ++I+D +SR
Sbjct: 352 NMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSR 411

Query: 235 KAWVHLLKTENEALDKFKEWKTLAKNQVNKRVKVLRTDNGLEFCNDEFDKFYKK---TWH 65
           K W + LK +++    FKEWK + K Q  K VKVLRTDNG  FC+D FD + +K     H
Sbjct: 412 KVWPYFLKHKDDTFAAFKEWKVMIKRQTEKEVKVLRTDNGGGFCSDAFDDYCRKEGIVMH 471

Query: 64  H 62
           H
Sbjct: 472 H 472



 Score = 81.6 bits (200), Expect(3) = 2e-47
 Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 3/131 (2%)
 Frame = -2

Query: 816 VYMGNNYICKVLGIGDITLKLHDSKLRVLTDVRFIPALKRNLISLSSLDKLRFSYKTQNG 637
           V MG++   +++GIG + +K HD   R L DVR IP + RNLISLS+LD   + Y    G
Sbjct: 216 VRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGG 275

Query: 636 KLNILKDKDI-ILTNIKRNGLYILNGSHTFSKLVNTTLVTTQ--NKTNLWHLRLCHIGKK 466
            + + K   + ++ ++    LY+L GS T    V   +V+    +KTN+WH+RL H+ + 
Sbjct: 276 VVKVSKGSLVYMIGDMNSANLYVLRGS-TLHGYVTAAVVSKDEPSKTNMWHMRLGHMSEL 334

Query: 465 GL*VLNKMGYL 433
           G+  L K   L
Sbjct: 335 GMAELMKRNLL 345



 Score = 30.0 bits (66), Expect(3) = 2e-47
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 78  KKHGIMRHKIVRNTT*QNGAAERMNK 1
           +K GI+ H  +  T  QNG AERMN+
Sbjct: 464 RKEGIVMHHTIPYTPQQNGVAERMNR 489