BLASTX nr result
ID: Phellodendron21_contig00040797
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Phellodendron21_contig00040797
(736 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KDO63582.1 hypothetical protein CISIN_1g0005254mg, partial [Citr... 397 e-136
XP_006477376.1 PREDICTED: DNA-directed RNA polymerase IV subunit... 398 e-126
XP_006440521.1 hypothetical protein CICLE_v10018489mg [Citrus cl... 398 e-126
KDP25521.1 hypothetical protein JCGZ_20677 [Jatropha curcas] 314 1e-97
GAV79426.1 RNA_pol_Rpb1_2 domain-containing protein/RNA_pol_Rpb1... 321 1e-97
XP_015871051.1 PREDICTED: DNA-directed RNA polymerase IV subunit... 304 2e-97
OAY56577.1 hypothetical protein MANES_02G028200 [Manihot esculen... 315 9e-96
XP_017973941.1 PREDICTED: DNA-directed RNA polymerase IV subunit... 314 1e-95
XP_016713422.1 PREDICTED: DNA-directed RNA polymerase IV subunit... 314 2e-95
XP_012476048.1 PREDICTED: DNA-directed RNA polymerase IV subunit... 314 2e-95
XP_012087018.1 PREDICTED: DNA-directed RNA polymerase IV subunit... 314 2e-95
XP_007040111.2 PREDICTED: DNA-directed RNA polymerase IV subunit... 314 3e-95
EOY24612.1 DNA-directed RNA polymerase II subunit RPB1-B, putati... 314 3e-95
KJB25756.1 hypothetical protein B456_004G207300 [Gossypium raimo... 314 4e-95
XP_017626687.1 PREDICTED: DNA-directed RNA polymerase IV subunit... 314 4e-95
XP_016713417.1 PREDICTED: DNA-directed RNA polymerase IV subunit... 314 4e-95
XP_012476045.1 PREDICTED: DNA-directed RNA polymerase IV subunit... 314 4e-95
XP_016717099.1 PREDICTED: DNA-directed RNA polymerase IV subunit... 313 4e-95
XP_016717097.1 PREDICTED: DNA-directed RNA polymerase IV subunit... 313 1e-94
XP_008348786.1 PREDICTED: DNA-directed RNA polymerase IV subunit... 293 1e-94
>KDO63582.1 hypothetical protein CISIN_1g0005254mg, partial [Citrus sinensis]
Length = 363
Score = 397 bits (1019), Expect = e-136
Identities = 195/229 (85%), Positives = 212/229 (92%), Gaps = 1/229 (0%)
Frame = +3
Query: 51 DCSSINMQKECNDTFCVTVMIVENSK-SSIELESIQKWVIPFLLRTVVKGFREIKKVDIL 227
DCSSINMQKECND FCVTVMIVEN K +SI+LE+IQ WV+PFLL+TVVKGFREIKKVDIL
Sbjct: 1 DCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDIL 60
Query: 228 WNDKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDNIRS 407
W DKQKA+ SH+DSFGELYLRVSMSG C TSLWSALMN C QIMDMI+WTRSHPDNIRS
Sbjct: 61 WKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRS 120
Query: 408 FCLAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQRE 587
FCLAYGIDAG++FFL NLESA+SDT KNILPEHL +VAN+LSATGEFVGLNAKGLA QR+
Sbjct: 121 FCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRK 180
Query: 588 HASVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
H+SVSSPFVQAFFS+PGASFIKAAKAGAVDNLQGS+DAL WGKVP VGT
Sbjct: 181 HSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGT 229
>XP_006477376.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Citrus sinensis]
XP_006477377.1 PREDICTED: DNA-directed RNA polymerase IV
subunit 1 [Citrus sinensis] XP_006477378.1 PREDICTED:
DNA-directed RNA polymerase IV subunit 1 [Citrus
sinensis] XP_015385387.1 PREDICTED: DNA-directed RNA
polymerase IV subunit 1 [Citrus sinensis]
Length = 1443
Score = 398 bits (1022), Expect = e-126
Identities = 195/233 (83%), Positives = 215/233 (92%), Gaps = 1/233 (0%)
Frame = +3
Query: 39 LNDTDCSSINMQKECNDTFCVTVMIVENSK-SSIELESIQKWVIPFLLRTVVKGFREIKK 215
+++ DCSSINMQKECND FCVTVMIVEN K +SI+LE+IQ WV+PFLL+TVVKGFREIKK
Sbjct: 1021 ISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKK 1080
Query: 216 VDILWNDKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPD 395
VDILW DKQKA+ SH+DSFGELYLRVSMSG C TSLWSALMN C QIMDMI+WTRSHPD
Sbjct: 1081 VDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPD 1140
Query: 396 NIRSFCLAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLA 575
NIRSFCLAYGIDAG++FFL NLESA+SDT KNILPEHL +VAN+LSATGEFVGLNAKGLA
Sbjct: 1141 NIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLA 1200
Query: 576 QQREHASVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
QR+H+SVSSPFVQAFFS+PGASFIKAAKAGAVDNLQGS+DAL WGKVP VGT
Sbjct: 1201 LQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGT 1253
>XP_006440521.1 hypothetical protein CICLE_v10018489mg [Citrus clementina] ESR53761.1
hypothetical protein CICLE_v10018489mg [Citrus
clementina]
Length = 1443
Score = 398 bits (1022), Expect = e-126
Identities = 195/233 (83%), Positives = 215/233 (92%), Gaps = 1/233 (0%)
Frame = +3
Query: 39 LNDTDCSSINMQKECNDTFCVTVMIVENSK-SSIELESIQKWVIPFLLRTVVKGFREIKK 215
+++ DCSSINMQKECND FCVTVMIVEN K +SI+LE+IQ WV+PFLL+TVVKGFREIKK
Sbjct: 1021 ISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKK 1080
Query: 216 VDILWNDKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPD 395
VDILW DKQKA+ SH+DSFGELYLRVSMSG C TSLWSALMN C QIMDMI+WTRSHPD
Sbjct: 1081 VDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPD 1140
Query: 396 NIRSFCLAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLA 575
NIRSFCLAYGIDAG++FFL NLESA+SDT KNILPEHL +VAN+LSATGEFVGLNAKGLA
Sbjct: 1141 NIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLA 1200
Query: 576 QQREHASVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
QR+H+SVSSPFVQAFFS+PGASFIKAAKAGAVDNLQGS+DAL WGKVP VGT
Sbjct: 1201 LQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGT 1253
>KDP25521.1 hypothetical protein JCGZ_20677 [Jatropha curcas]
Length = 942
Score = 314 bits (805), Expect = 1e-97
Identities = 153/229 (66%), Positives = 186/229 (81%), Gaps = 1/229 (0%)
Frame = +3
Query: 51 DCSSINMQKECNDTFCVTVMIVENSK-SSIELESIQKWVIPFLLRTVVKGFREIKKVDIL 227
DCS + +E DT C+TV ++E +K SSI+L++I+ +IPFLL TV+KG EI+KVDIL
Sbjct: 529 DCSVADNHREIEDTLCITVTVIEKAKNSSIKLDTIRDLIIPFLLETVLKGLMEIEKVDIL 588
Query: 228 WNDKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDNIRS 407
WN++ + SHN S+GELYLRVSMSG +T LW+ L++ CL IMDMI+WTRSH DNIR
Sbjct: 589 WNERPRIQKSHNRSYGELYLRVSMSGRSDKTRLWNLLVDHCLPIMDMIDWTRSHSDNIRD 648
Query: 408 FCLAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQRE 587
FCLAYGIDAG +FFLNNL+SA+SD K++LPEHL LVAN LS TGEFVGLNAKG +QRE
Sbjct: 649 FCLAYGIDAGWEFFLNNLKSAISDVGKSVLPEHLILVANCLSVTGEFVGLNAKGWKRQRE 708
Query: 588 HASVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
HASV SPFVQA FSSPG+ FIKAAK G +D+L+GS+DALAWGK PPVGT
Sbjct: 709 HASVLSPFVQACFSSPGSCFIKAAKGGVMDDLRGSLDALAWGKTPPVGT 757
>GAV79426.1 RNA_pol_Rpb1_2 domain-containing protein/RNA_pol_Rpb1_3
domain-containing protein/RNA_pol_Rpb1_1
domain-containing protein/RNA_pol_Rpb1_4
domain-containing protein/DUF3223 domain-containing
protein, partial [Cephalotus follicularis]
Length = 1513
Score = 321 bits (822), Expect = 1e-97
Identities = 159/232 (68%), Positives = 188/232 (81%)
Frame = +3
Query: 39 LNDTDCSSINMQKECNDTFCVTVMIVENSKSSIELESIQKWVIPFLLRTVVKGFREIKKV 218
+ TDCS+ + +E +DTFC+TV I+EN K+ ++L+ I+ +IPFLL TV+KGF EIKKV
Sbjct: 1094 IRSTDCSADDKTEE-DDTFCITVTIIENLKNPLQLDFIRDKIIPFLLGTVIKGFWEIKKV 1152
Query: 219 DILWNDKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDN 398
DI+WND+ K + S SFGELYLRVS SGD T WS LMN CL+I+DMI+WTRSHPDN
Sbjct: 1153 DIIWNDRPKVSKSQVGSFGELYLRVSTSGDYGGTKFWSRLMNDCLRIIDMIDWTRSHPDN 1212
Query: 399 IRSFCLAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQ 578
IRSFCLAYGIDAG KFFL+NLESA+SD K ILPEHL LVAN LSATG+FV LN+KGLAQ
Sbjct: 1213 IRSFCLAYGIDAGWKFFLSNLESAISDVGKTILPEHLLLVANCLSATGDFVSLNSKGLAQ 1272
Query: 579 QREHASVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
QREHASV SPF+QA F++P A F KAAKAG VD+L+GSIDAL WGK P VGT
Sbjct: 1273 QREHASVPSPFMQACFTNPSACFTKAAKAGVVDDLRGSIDALGWGKTPSVGT 1324
>XP_015871051.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Ziziphus
jujuba]
Length = 564
Score = 304 bits (778), Expect = 2e-97
Identities = 153/229 (66%), Positives = 182/229 (79%), Gaps = 1/229 (0%)
Frame = +3
Query: 51 DCSSINMQKECNDTFCVTVMIVENSK-SSIELESIQKWVIPFLLRTVVKGFREIKKVDIL 227
+CS + ++ D C+ V I ENSK SSIEL+ +Q VIP LL TV+KGFREIKKVDIL
Sbjct: 140 NCSEADTHEKDKDPCCIVVSIPENSKNSSIELDMVQNVVIPSLLGTVIKGFREIKKVDIL 199
Query: 228 WNDKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDNIRS 407
W D+ K + + + S GELYLRVSMSG RT WS L+N L IMDMI+W+RSHPDNI+
Sbjct: 200 WKDRPKISKAIHGSSGELYLRVSMSGSTSRTRAWSMLLNDSLPIMDMIDWSRSHPDNIKE 259
Query: 408 FCLAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQRE 587
FC++YGIDAG K+FLNNLESA+SD K ILPEHL LVA+SLS TG+FVGLNAKG+AQQ+E
Sbjct: 260 FCVSYGIDAGWKYFLNNLESAISDIGKTILPEHLLLVADSLSVTGQFVGLNAKGIAQQKE 319
Query: 588 HASVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
HAS SSPF++A FS+PGA FIKAAKAG D LQGS+DALAWGKVP +GT
Sbjct: 320 HASSSSPFMRACFSTPGAHFIKAAKAGVTDCLQGSLDALAWGKVPAMGT 368
>OAY56577.1 hypothetical protein MANES_02G028200 [Manihot esculenta] OAY56578.1
hypothetical protein MANES_02G028200 [Manihot esculenta]
Length = 1451
Score = 315 bits (808), Expect = 9e-96
Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 1/229 (0%)
Frame = +3
Query: 51 DCSSINMQKECNDTFCVTVMIVENSK-SSIELESIQKWVIPFLLRTVVKGFREIKKVDIL 227
DCS + Q+E DTFC+T+ I+E SK SS +LE+IQ +IPFLL+TV+KG EI+KVDIL
Sbjct: 1039 DCSVADNQREKEDTFCLTITIIEKSKNSSTQLETIQDLMIPFLLQTVLKGLMEIEKVDIL 1098
Query: 228 WNDKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDNIRS 407
WND+ + N H GELYLRVSMSG +T LWS L++ CL IMD+INWTRSHPDNIR
Sbjct: 1099 WNDRPRMPNLHKHPCGELYLRVSMSGSSDKTRLWSLLVDYCLPIMDVINWTRSHPDNIRD 1158
Query: 408 FCLAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQRE 587
FCLAYGIDAG +FFLNNLESA+SD K++LPEHL LVAN LS TGEFVGLNAKG +QRE
Sbjct: 1159 FCLAYGIDAGWRFFLNNLESAISDVGKSVLPEHLLLVANCLSVTGEFVGLNAKGWKRQRE 1218
Query: 588 HASVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
HASV SPFVQA FS+PG FIKAAK VD+LQGS+DAL+WGK+P +GT
Sbjct: 1219 HASVLSPFVQACFSNPGNCFIKAAKGEVVDDLQGSLDALSWGKIPSIGT 1267
>XP_017973941.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Theobroma cacao]
Length = 1343
Score = 314 bits (805), Expect = 1e-95
Identities = 160/232 (68%), Positives = 184/232 (79%), Gaps = 1/232 (0%)
Frame = +3
Query: 42 NDTDCSSINMQKECNDTFCVTVMIVENSKSS-IELESIQKWVIPFLLRTVVKGFREIKKV 218
N CS I+M E +DTFC+TV IVE SKSS +EL+ I+ VIP+LL V+KGF EIKKV
Sbjct: 920 NGRACSHIDMPNE-DDTFCITVTIVEYSKSSHMELDVIRDMVIPYLLEAVIKGFPEIKKV 978
Query: 219 DILWNDKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDN 398
DILW D+ K + H S GELYLRV +SGD T LW LMN CLQIMDMI+WTRSHPDN
Sbjct: 979 DILWKDRLKVSKPHRSSCGELYLRVFVSGDFGITKLWGVLMNDCLQIMDMIDWTRSHPDN 1038
Query: 399 IRSFCLAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQ 578
I CLAYGIDAG KFFLNNL+SA+SDT K IL EHL +VAN LSATGEFVGLN+KGL Q
Sbjct: 1039 INQLCLAYGIDAGWKFFLNNLKSAISDTGKTILNEHLLVVANCLSATGEFVGLNSKGLRQ 1098
Query: 579 QREHASVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
QREHA VSSPF+QA FS+P ASF+KAAK GA D+LQG+IDALAWG++P +GT
Sbjct: 1099 QREHAYVSSPFMQACFSNPSASFVKAAKTGASDDLQGTIDALAWGRIPHIGT 1150
>XP_016713422.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Gossypium hirsutum]
Length = 1340
Score = 314 bits (804), Expect = 2e-95
Identities = 155/227 (68%), Positives = 183/227 (80%)
Frame = +3
Query: 54 CSSINMQKECNDTFCVTVMIVENSKSSIELESIQKWVIPFLLRTVVKGFREIKKVDILWN 233
CS I+M+ E +DTFC+TV IVE S IEL+ I+ VIP LL VVKGF EIKKV+ILWN
Sbjct: 922 CSIIDMESE-DDTFCITVTIVECKTSRIELDVIEDMVIPSLLEAVVKGFPEIKKVEILWN 980
Query: 234 DKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDNIRSFC 413
++ + NSH + GELYLRVS+SGD T LWS LMN CLQ+MD+I+WTRSHPDNI FC
Sbjct: 981 EEIRVPNSHKSAPGELYLRVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFC 1040
Query: 414 LAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQREHA 593
LA+GIDAG +FFLNN++SA+SDT K+IL EHLHL AN LSATGEFVGLN+KGL QQREHA
Sbjct: 1041 LAFGIDAGWRFFLNNMKSAISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHA 1100
Query: 594 SVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
VSSPF+QA FS+P A F+KAAK G DNLQG+ID LAWG+VP +GT
Sbjct: 1101 FVSSPFMQACFSNPSACFVKAAKTGVADNLQGTIDLLAWGRVPHIGT 1147
>XP_012476048.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Gossypium raimondii]
Length = 1340
Score = 314 bits (804), Expect = 2e-95
Identities = 156/227 (68%), Positives = 182/227 (80%)
Frame = +3
Query: 54 CSSINMQKECNDTFCVTVMIVENSKSSIELESIQKWVIPFLLRTVVKGFREIKKVDILWN 233
CS I+M+ E +DTFC+TV IVE S IEL+ IQ VIP LL VVKGF EIKKV+ILWN
Sbjct: 922 CSVIDMENE-DDTFCITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWN 980
Query: 234 DKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDNIRSFC 413
+ + NSH + GELYLRVS+SGD T LWS LMN CLQ+MD+I+WTRSHPDNI FC
Sbjct: 981 EDFRVPNSHKPAPGELYLRVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFC 1040
Query: 414 LAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQREHA 593
LA+GIDAG +FFLNN++SA+SDT K+IL EHLHL AN LSATGEFVGLN+KGL QQREHA
Sbjct: 1041 LAFGIDAGWRFFLNNMKSAISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHA 1100
Query: 594 SVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
VSSPF+QA FS+P A F+KAAK G DNLQG+ID LAWG+VP +GT
Sbjct: 1101 FVSSPFMQACFSNPSACFVKAAKTGVADNLQGTIDLLAWGRVPRIGT 1147
>XP_012087018.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
Length = 1453
Score = 314 bits (805), Expect = 2e-95
Identities = 153/229 (66%), Positives = 186/229 (81%), Gaps = 1/229 (0%)
Frame = +3
Query: 51 DCSSINMQKECNDTFCVTVMIVENSK-SSIELESIQKWVIPFLLRTVVKGFREIKKVDIL 227
DCS + +E DT C+TV ++E +K SSI+L++I+ +IPFLL TV+KG EI+KVDIL
Sbjct: 1040 DCSVADNHREIEDTLCITVTVIEKAKNSSIKLDTIRDLIIPFLLETVLKGLMEIEKVDIL 1099
Query: 228 WNDKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDNIRS 407
WN++ + SHN S+GELYLRVSMSG +T LW+ L++ CL IMDMI+WTRSH DNIR
Sbjct: 1100 WNERPRIQKSHNRSYGELYLRVSMSGRSDKTRLWNLLVDHCLPIMDMIDWTRSHSDNIRD 1159
Query: 408 FCLAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQRE 587
FCLAYGIDAG +FFLNNL+SA+SD K++LPEHL LVAN LS TGEFVGLNAKG +QRE
Sbjct: 1160 FCLAYGIDAGWEFFLNNLKSAISDVGKSVLPEHLILVANCLSVTGEFVGLNAKGWKRQRE 1219
Query: 588 HASVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
HASV SPFVQA FSSPG+ FIKAAK G +D+L+GS+DALAWGK PPVGT
Sbjct: 1220 HASVLSPFVQACFSSPGSCFIKAAKGGVMDDLRGSLDALAWGKTPPVGT 1268
>XP_007040111.2 PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Theobroma cacao]
Length = 1484
Score = 314 bits (805), Expect = 3e-95
Identities = 160/232 (68%), Positives = 184/232 (79%), Gaps = 1/232 (0%)
Frame = +3
Query: 42 NDTDCSSINMQKECNDTFCVTVMIVENSKSS-IELESIQKWVIPFLLRTVVKGFREIKKV 218
N CS I+M E +DTFC+TV IVE SKSS +EL+ I+ VIP+LL V+KGF EIKKV
Sbjct: 1061 NGRACSHIDMPNE-DDTFCITVTIVEYSKSSHMELDVIRDMVIPYLLEAVIKGFPEIKKV 1119
Query: 219 DILWNDKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDN 398
DILW D+ K + H S GELYLRV +SGD T LW LMN CLQIMDMI+WTRSHPDN
Sbjct: 1120 DILWKDRLKVSKPHRSSCGELYLRVFVSGDFGITKLWGVLMNDCLQIMDMIDWTRSHPDN 1179
Query: 399 IRSFCLAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQ 578
I CLAYGIDAG KFFLNNL+SA+SDT K IL EHL +VAN LSATGEFVGLN+KGL Q
Sbjct: 1180 INQLCLAYGIDAGWKFFLNNLKSAISDTGKTILNEHLLVVANCLSATGEFVGLNSKGLRQ 1239
Query: 579 QREHASVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
QREHA VSSPF+QA FS+P ASF+KAAK GA D+LQG+IDALAWG++P +GT
Sbjct: 1240 QREHAYVSSPFMQACFSNPSASFVKAAKTGASDDLQGTIDALAWGRIPHIGT 1291
>EOY24612.1 DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao]
Length = 1484
Score = 314 bits (805), Expect = 3e-95
Identities = 160/232 (68%), Positives = 184/232 (79%), Gaps = 1/232 (0%)
Frame = +3
Query: 42 NDTDCSSINMQKECNDTFCVTVMIVENSKSS-IELESIQKWVIPFLLRTVVKGFREIKKV 218
N CS I+M E +DTFC+TV IVE SKSS +EL+ I+ VIP+LL V+KGF EIKKV
Sbjct: 1061 NGRACSHIDMPNE-DDTFCITVTIVEYSKSSHMELDVIRDMVIPYLLEAVIKGFPEIKKV 1119
Query: 219 DILWNDKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDN 398
DILW D+ K + H S GELYLRV +SGD T LW LMN CLQIMDMI+WTRSHPDN
Sbjct: 1120 DILWKDRLKVSKPHKSSCGELYLRVFVSGDFGITKLWGVLMNDCLQIMDMIDWTRSHPDN 1179
Query: 399 IRSFCLAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQ 578
I CLAYGIDAG KFFLNNL+SA+SDT K IL EHL +VAN LSATGEFVGLN+KGL Q
Sbjct: 1180 INQLCLAYGIDAGWKFFLNNLKSAISDTGKTILNEHLLVVANCLSATGEFVGLNSKGLRQ 1239
Query: 579 QREHASVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
QREHA VSSPF+QA FS+P ASF+KAAK GA D+LQG+IDALAWG++P +GT
Sbjct: 1240 QREHAYVSSPFMQACFSNPSASFVKAAKTGASDDLQGTIDALAWGRIPHIGT 1291
>KJB25756.1 hypothetical protein B456_004G207300 [Gossypium raimondii]
Length = 1478
Score = 314 bits (804), Expect = 4e-95
Identities = 156/227 (68%), Positives = 182/227 (80%)
Frame = +3
Query: 54 CSSINMQKECNDTFCVTVMIVENSKSSIELESIQKWVIPFLLRTVVKGFREIKKVDILWN 233
CS I+M+ E +DTFC+TV IVE S IEL+ IQ VIP LL VVKGF EIKKV+ILWN
Sbjct: 1060 CSVIDMENE-DDTFCITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWN 1118
Query: 234 DKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDNIRSFC 413
+ + NSH + GELYLRVS+SGD T LWS LMN CLQ+MD+I+WTRSHPDNI FC
Sbjct: 1119 EDFRVPNSHKPAPGELYLRVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFC 1178
Query: 414 LAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQREHA 593
LA+GIDAG +FFLNN++SA+SDT K+IL EHLHL AN LSATGEFVGLN+KGL QQREHA
Sbjct: 1179 LAFGIDAGWRFFLNNMKSAISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHA 1238
Query: 594 SVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
VSSPF+QA FS+P A F+KAAK G DNLQG+ID LAWG+VP +GT
Sbjct: 1239 FVSSPFMQACFSNPSACFVKAAKTGVADNLQGTIDLLAWGRVPRIGT 1285
>XP_017626687.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Gossypium
arboreum] XP_017626688.1 PREDICTED: DNA-directed RNA
polymerase IV subunit 1-like [Gossypium arboreum]
Length = 1481
Score = 314 bits (804), Expect = 4e-95
Identities = 155/227 (68%), Positives = 183/227 (80%)
Frame = +3
Query: 54 CSSINMQKECNDTFCVTVMIVENSKSSIELESIQKWVIPFLLRTVVKGFREIKKVDILWN 233
CS I+M+ E +DTFC+TV IVE S IEL+ I+ VIP LL VVKGF EIKKV+ILWN
Sbjct: 1063 CSIIDMENE-DDTFCITVTIVECKTSRIELDVIEDMVIPSLLEAVVKGFPEIKKVEILWN 1121
Query: 234 DKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDNIRSFC 413
++ + NSH + GELYLRVS+SGD T LWS LMN CLQ+MD+I+WTRSHPDNI FC
Sbjct: 1122 EEIRVPNSHKSAPGELYLRVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFC 1181
Query: 414 LAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQREHA 593
LA+GIDAG +FFLNN++SA+SDT K+IL EHLHL AN LSATGEFVGLN+KGL QQREHA
Sbjct: 1182 LAFGIDAGWRFFLNNMKSAISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHA 1241
Query: 594 SVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
VSSPF+QA FS+P A F+KAAK G DNLQG+ID LAWG+VP +GT
Sbjct: 1242 FVSSPFMQACFSNPSACFVKAAKTGVADNLQGTIDLLAWGRVPHIGT 1288
>XP_016713417.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Gossypium hirsutum] XP_016713418.1 PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Gossypium hirsutum] XP_016713420.1 PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Gossypium hirsutum] XP_016713421.1 PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Gossypium hirsutum]
Length = 1481
Score = 314 bits (804), Expect = 4e-95
Identities = 155/227 (68%), Positives = 183/227 (80%)
Frame = +3
Query: 54 CSSINMQKECNDTFCVTVMIVENSKSSIELESIQKWVIPFLLRTVVKGFREIKKVDILWN 233
CS I+M+ E +DTFC+TV IVE S IEL+ I+ VIP LL VVKGF EIKKV+ILWN
Sbjct: 1063 CSIIDMESE-DDTFCITVTIVECKTSRIELDVIEDMVIPSLLEAVVKGFPEIKKVEILWN 1121
Query: 234 DKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDNIRSFC 413
++ + NSH + GELYLRVS+SGD T LWS LMN CLQ+MD+I+WTRSHPDNI FC
Sbjct: 1122 EEIRVPNSHKSAPGELYLRVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFC 1181
Query: 414 LAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQREHA 593
LA+GIDAG +FFLNN++SA+SDT K+IL EHLHL AN LSATGEFVGLN+KGL QQREHA
Sbjct: 1182 LAFGIDAGWRFFLNNMKSAISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHA 1241
Query: 594 SVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
VSSPF+QA FS+P A F+KAAK G DNLQG+ID LAWG+VP +GT
Sbjct: 1242 FVSSPFMQACFSNPSACFVKAAKTGVADNLQGTIDLLAWGRVPHIGT 1288
>XP_012476045.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Gossypium raimondii] XP_012476046.1 PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Gossypium raimondii] KJB25755.1 hypothetical protein
B456_004G207300 [Gossypium raimondii] KJB25757.1
hypothetical protein B456_004G207300 [Gossypium
raimondii]
Length = 1481
Score = 314 bits (804), Expect = 4e-95
Identities = 156/227 (68%), Positives = 182/227 (80%)
Frame = +3
Query: 54 CSSINMQKECNDTFCVTVMIVENSKSSIELESIQKWVIPFLLRTVVKGFREIKKVDILWN 233
CS I+M+ E +DTFC+TV IVE S IEL+ IQ VIP LL VVKGF EIKKV+ILWN
Sbjct: 1063 CSVIDMENE-DDTFCITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWN 1121
Query: 234 DKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDNIRSFC 413
+ + NSH + GELYLRVS+SGD T LWS LMN CLQ+MD+I+WTRSHPDNI FC
Sbjct: 1122 EDFRVPNSHKPAPGELYLRVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFC 1181
Query: 414 LAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQREHA 593
LA+GIDAG +FFLNN++SA+SDT K+IL EHLHL AN LSATGEFVGLN+KGL QQREHA
Sbjct: 1182 LAFGIDAGWRFFLNNMKSAISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHA 1241
Query: 594 SVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
VSSPF+QA FS+P A F+KAAK G DNLQG+ID LAWG+VP +GT
Sbjct: 1242 FVSSPFMQACFSNPSACFVKAAKTGVADNLQGTIDLLAWGRVPRIGT 1288
>XP_016717099.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Gossypium hirsutum]
Length = 1340
Score = 313 bits (801), Expect = 4e-95
Identities = 155/227 (68%), Positives = 182/227 (80%)
Frame = +3
Query: 54 CSSINMQKECNDTFCVTVMIVENSKSSIELESIQKWVIPFLLRTVVKGFREIKKVDILWN 233
CS I+M+ E +DTFC+TV IVE S IEL+ IQ VIP LL VVKGF EIKKV+ILWN
Sbjct: 922 CSIIDMENE-DDTFCITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWN 980
Query: 234 DKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDNIRSFC 413
+ + NSH + GELYLRVS+SGD T LWS LMN CLQ+MD+I+WTRSHPDNI FC
Sbjct: 981 EDFRVPNSHKPAPGELYLRVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFC 1040
Query: 414 LAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQREHA 593
LA+GIDAG +FFLNN++SA+SDT K+IL EHLHL AN LSATGEFVGLN+KGL Q+REHA
Sbjct: 1041 LAFGIDAGWRFFLNNMKSAISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQEREHA 1100
Query: 594 SVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
VSSPF+QA FS+P A F+KAAK G DNLQG+ID LAWG+VP +GT
Sbjct: 1101 FVSSPFMQACFSNPSACFVKAAKTGVADNLQGTIDLLAWGRVPRIGT 1147
>XP_016717097.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Gossypium hirsutum] XP_016717098.1 PREDICTED:
DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Gossypium hirsutum]
Length = 1481
Score = 313 bits (801), Expect = 1e-94
Identities = 155/227 (68%), Positives = 182/227 (80%)
Frame = +3
Query: 54 CSSINMQKECNDTFCVTVMIVENSKSSIELESIQKWVIPFLLRTVVKGFREIKKVDILWN 233
CS I+M+ E +DTFC+TV IVE S IEL+ IQ VIP LL VVKGF EIKKV+ILWN
Sbjct: 1063 CSIIDMENE-DDTFCITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWN 1121
Query: 234 DKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPDNIRSFC 413
+ + NSH + GELYLRVS+SGD T LWS LMN CLQ+MD+I+WTRSHPDNI FC
Sbjct: 1122 EDFRVPNSHKPAPGELYLRVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFC 1181
Query: 414 LAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLAQQREHA 593
LA+GIDAG +FFLNN++SA+SDT K+IL EHLHL AN LSATGEFVGLN+KGL Q+REHA
Sbjct: 1182 LAFGIDAGWRFFLNNMKSAISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQEREHA 1241
Query: 594 SVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
VSSPF+QA FS+P A F+KAAK G DNLQG+ID LAWG+VP +GT
Sbjct: 1242 FVSSPFMQACFSNPSACFVKAAKTGVADNLQGTIDLLAWGRVPRIGT 1288
>XP_008348786.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Malus
domestica]
Length = 452
Score = 293 bits (751), Expect = 1e-94
Identities = 144/233 (61%), Positives = 178/233 (76%), Gaps = 1/233 (0%)
Frame = +3
Query: 39 LNDTDCSSINMQKECNDTFCVTVMIVENSKSSIE-LESIQKWVIPFLLRTVVKGFREIKK 215
+ DCS + K NDTFC+TV + EN KSS E L+ + VIPFLL TVVKG E+KK
Sbjct: 28 ITSKDCSEAHTCKGDNDTFCITVTMAENHKSSSEQLDKARDLVIPFLLETVVKGLLEVKK 87
Query: 216 VDILWNDKQKATNSHNDSFGELYLRVSMSGDCRRTSLWSALMNGCLQIMDMINWTRSHPD 395
VDILWND+ K + + S GELYL+VSM G + LWS L++ C+Q M++I+W+RSHPD
Sbjct: 88 VDILWNDQPKRSKVADGSSGELYLKVSMVGKSGKKRLWSMLLDSCIQXMNVIDWSRSHPD 147
Query: 396 NIRSFCLAYGIDAGIKFFLNNLESAVSDTSKNILPEHLHLVANSLSATGEFVGLNAKGLA 575
N+ +CLAYGID G +FLN+LES +D KNILPEHL LVA+ L+ TGEFVGLNAKG+A
Sbjct: 148 NVHEYCLAYGIDVGWNYFLNSLESTCNDIGKNILPEHLILVADCLTCTGEFVGLNAKGIA 207
Query: 576 QQREHASVSSPFVQAFFSSPGASFIKAAKAGAVDNLQGSIDALAWGKVPPVGT 734
QQ+EHASVSSPF+QA FS+PGA F+KAAKAGA+D L GS++ALAWGK PP GT
Sbjct: 208 QQQEHASVSSPFMQACFSTPGACFVKAAKAGAMDELPGSLEALAWGKXPPSGT 260