BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Phellodendron21_contig00037987
         (1048 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_006422925.1 hypothetical protein CICLE_v10028283mg [Citrus cl...   504   e-175
XP_002313876.2 hypothetical protein POPTR_0009s09860g [Populus t...   408   e-137
GAV62308.1 PseudoU_synth_2 domain-containing protein [Cephalotus...   404   e-136
ONH91759.1 hypothetical protein PRUPE_8G135400 [Prunus persica]       400   e-136
XP_011001179.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   402   e-135
XP_007199809.1 hypothetical protein PRUPE_ppa004969mg [Prunus pe...   400   e-134
XP_007199810.1 hypothetical protein PRUPE_ppa004969mg [Prunus pe...   400   e-134
XP_008236380.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   397   e-133
XP_011001172.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   396   e-133
XP_010096290.1 RNA pseudourine synthase 4 [Morus notabilis] EXB6...   388   e-129
EOX98365.1 Ribosomal pseudouridine synthase, putative [Theobroma...   384   e-128
XP_012075891.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   381   e-127
XP_007042534.2 PREDICTED: RNA pseudouridine synthase 4, mitochon...   380   e-127
XP_015892750.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   378   e-125
XP_018827853.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   377   e-125
OMO73995.1 Pseudouridine synthase, RsuA/RluB/C/D/E/F [Corchorus ...   375   e-125
XP_006486999.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   370   e-124
XP_002282614.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   373   e-123
XP_012450617.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   373   e-123
XP_016715765.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   371   e-123

>XP_006422925.1 hypothetical protein CICLE_v10028283mg [Citrus clementina] ESR36165.1
            hypothetical protein CICLE_v10028283mg [Citrus
            clementina]
          Length = 494

 Score =  504 bits (1297), Expect = e-175
 Identities = 260/340 (76%), Positives = 288/340 (84%), Gaps = 19/340 (5%)
 Frame = -3

Query: 965  LTKMXXXXXXXXLQTPPYSALYSGSRLSM----SSFHHHQSHYSTKT-------HINN-- 825
            LT+M        L++ P+SAL+  +R ++    SSFHHHQS Y+TKT       HINN  
Sbjct: 9    LTEMLFCRKLPLLRSRPFSALHGVARQAILSPSSSFHHHQSCYATKTLTRNNKTHINNCD 68

Query: 824  -----NDERRGKWFTLPPFTSTINGSALGRQLAGRSKSPTPETKALKWVLQCCPGLPRNL 660
                 +DERRGKWFTLPPFTSTI+GSALGRQLA  SKSP  ET ALKWVLQCCPGLPRN 
Sbjct: 69   DNNNGDDERRGKWFTLPPFTSTIDGSALGRQLACPSKSPISETTALKWVLQCCPGLPRNF 128

Query: 659  IQKIFRLRQVRRKSPGMESSDN-GQGQEIKLKRVAAKDSLNLGDQIFLPISVQESPSRKE 483
            +QK+FRL QVRR+SP ++SS N G  QEIKLKRVAAKDSL LGD+IFLPIS+QESPSRKE
Sbjct: 129  VQKLFRLSQVRRESPSLDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPISIQESPSRKE 188

Query: 482  DCPCTEDEVKYIQSLELYKDPAIIVVNKPPGMPVQGGIGIKRSIDELAATCLTYDYSEPP 303
             CPCTE+EV +IQSLELYKD AIIV+NKP GMPVQGGIGI+RSIDELAATCLTYDYSEPP
Sbjct: 189  KCPCTEEEVGFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPP 248

Query: 302  RLVHRLDRDSSGILVLGRNQTSATVLHSIFREKTFRASKDDNDNEKRILQRWYWALVIGT 123
            RLVHRLDRDSSGILV+GR QTSATVLHSIFREKTF ASK+DNDNEKRILQRWYWALV+GT
Sbjct: 249  RLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGT 308

Query: 122  PRCSQGVISAPLGKVVVDNGKSDRITVVNNDQFISSQHAV 3
            PRCS+GVISAPL KVVVDNGKSDRITVVNNDQ +S+QHAV
Sbjct: 309  PRCSKGVISAPLRKVVVDNGKSDRITVVNNDQIMSAQHAV 348


>XP_002313876.2 hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
           EEE87831.2 hypothetical protein POPTR_0009s09860g
           [Populus trichocarpa]
          Length = 471

 Score =  408 bits (1048), Expect = e-137
 Identities = 208/298 (69%), Positives = 248/298 (83%), Gaps = 4/298 (1%)
 Frame = -3

Query: 884 SMSSFHHHQSHYSTKTHINNN--DERRGKWFTLPPFTSTINGSALGRQLAGRSKSPTP-E 714
           S+S+    QS Y+T T   N+  +++RGKWFTLPP+TSTINGS LG  L+ R  + +  E
Sbjct: 29  SISTVRVLQSRYTTNTKSQNHYENDKRGKWFTLPPYTSTINGSVLGIALSARIPAKSASE 88

Query: 713 TKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESSDNG-QGQEIKLKRVAAKDSLNL 537
           T ALKWVL+CCP LPRNL+QK+FRLRQVRR+SP MES + G QGQE +LKRVAAKDS+++
Sbjct: 89  TTALKWVLRCCPELPRNLVQKLFRLRQVRRESPVMESCNLGDQGQEHRLKRVAAKDSMDV 148

Query: 536 GDQIFLPISVQESPSRKEDCPCTEDEVKYIQSLELYKDPAIIVVNKPPGMPVQGGIGIKR 357
           GD+IFLPISV+  P+ K+DC C E+E+ +I+ LELYKD AIIVVNKPPGMPVQGGIGIKR
Sbjct: 149 GDRIFLPISVKVLPAEKQDCHCNEEEINFIRGLELYKDAAIIVVNKPPGMPVQGGIGIKR 208

Query: 356 SIDELAATCLTYDYSEPPRLVHRLDRDSSGILVLGRNQTSATVLHSIFREKTFRASKDDN 177
           S+DEL+A+C + DYSEPPRLVHRLDRD SGILV+GR QTSATVLH+IFREKT  AS DD 
Sbjct: 209 SLDELSASCFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDV 268

Query: 176 DNEKRILQRWYWALVIGTPRCSQGVISAPLGKVVVDNGKSDRITVVNNDQFISSQHAV 3
            N++RILQR YWALVIG+PR  +G+ISAPLGKVVVDNGKSDRITVV N Q +SSQHAV
Sbjct: 269 GNKRRILQRKYWALVIGSPRRPKGLISAPLGKVVVDNGKSDRITVVENSQNLSSQHAV 326


>GAV62308.1 PseudoU_synth_2 domain-containing protein [Cephalotus follicularis]
          Length = 467

 Score =  404 bits (1039), Expect = e-136
 Identities = 211/312 (67%), Positives = 248/312 (79%), Gaps = 7/312 (2%)
 Frame = -3

Query: 917 PYSALYSGSRLSMSSFHHHQSHYSTKTHINNNDERRGKWFTLPPFTSTINGSALGRQLA- 741
           PY+A   G    +++FH +QS  ST+        R GKWF +PPFT  INGSALG +LA 
Sbjct: 18  PYTAAPGGYEHILAAFHQYQSFSSTQ-------RRGGKWFPVPPFTHAINGSALGSELAR 70

Query: 740 -----GRSKSPTPETKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESSDNG-QGQE 579
                  SK+   ET A+KWVL+CCP LPR+L+QK+FRLRQVRR S    SSD G QGQ 
Sbjct: 71  GGGGASASKAAASETTAIKWVLKCCPELPRSLVQKLFRLRQVRRGSADGGSSDLGAQGQA 130

Query: 578 IKLKRVAAKDSLNLGDQIFLPISVQESPSRKEDCPCTEDEVKYIQSLELYKDPAIIVVNK 399
            +LKRVAAKD LNLGDQIFLPISVQE PS K++C C E+EV +++SLELYKDPAIIVVNK
Sbjct: 131 PQLKRVAAKDLLNLGDQIFLPISVQELPSEKQECHCCEEEVNFVRSLELYKDPAIIVVNK 190

Query: 398 PPGMPVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVLGRNQTSATVLHS 219
           P GMPVQGG+GIKRS+DELAATCL+YDYSEPPRLVHRLDRD SGILV+GR Q SATVLHS
Sbjct: 191 PSGMPVQGGVGIKRSLDELAATCLSYDYSEPPRLVHRLDRDCSGILVMGRTQLSATVLHS 250

Query: 218 IFREKTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVISAPLGKVVVDNGKSDRITVV 39
           IFREKT  ASK + +N+KRILQR YWALVIG+PR ++G+++APLGKVV+DNGKSDRITVV
Sbjct: 251 IFREKTVDASKCEINNKKRILQRRYWALVIGSPRRTKGLVAAPLGKVVLDNGKSDRITVV 310

Query: 38  NNDQFISSQHAV 3
           +  Q +SSQHAV
Sbjct: 311 DCAQMMSSQHAV 322


>ONH91759.1 hypothetical protein PRUPE_8G135400 [Prunus persica]
          Length = 370

 Score =  400 bits (1029), Expect = e-136
 Identities = 210/327 (64%), Positives = 259/327 (79%), Gaps = 21/327 (6%)
 Frame = -3

Query: 920 PPYSALYSGSRLSMSSFHHHQSHYSTKTHINNNDERRGKWFTLPPFTSTINGSALGRQLA 741
           PP S   S +RL +S+FH+ +S+ +T+T   + ++R  KWFTLPPFT+TINGSALG++L+
Sbjct: 14  PPPS---STARLCISAFHNWRSYATTETFHEDREKRGEKWFTLPPFTATINGSALGKELS 70

Query: 740 -----GR--------SKSPTPETKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESS 600
                GR        + + +  T ALKWV +CCP LPR+L+QK+FRLRQVRR+S  ME S
Sbjct: 71  RNRSYGRDVITKTATASTTSTTTTALKWVTRCCPELPRSLVQKLFRLRQVRRESCDMECS 130

Query: 599 DNG-QGQEIKLKRVAAKDSLNLGDQIFLPISVQESPSRKEDCP-------CTEDEVKYIQ 444
             G +  E  LKRVAAKDS+N+GD+I LP+SVQE P+ K++ P       C+E+EV +I+
Sbjct: 131 GEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIR 190

Query: 443 SLELYKDPAIIVVNKPPGMPVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDSSGI 264
           SLELYKDPAIIV+NKPPGMPVQGGIGIKRS+DELAA CL+YD+SEPPRLVHRLDRDSSGI
Sbjct: 191 SLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGI 250

Query: 263 LVLGRNQTSATVLHSIFREKTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVISAPLG 84
           LV+GR QTSATVLHSIFREKTF AS D+ D+ KRILQR YWALVIG+PR  +G+ISAPLG
Sbjct: 251 LVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLG 310

Query: 83  KVVVDNGKSDRITVVNNDQFISSQHAV 3
           KVVVDNGKSDRIT+VN+ Q + SQHA+
Sbjct: 311 KVVVDNGKSDRITIVNDSQTLPSQHAI 337


>XP_011001179.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
           [Populus euphratica]
          Length = 471

 Score =  402 bits (1033), Expect = e-135
 Identities = 204/290 (70%), Positives = 244/290 (84%), Gaps = 4/290 (1%)
 Frame = -3

Query: 860 QSHYSTKTHINNN--DERRGKWFTLPPFTSTINGSALGRQLAGRSKSPTP-ETKALKWVL 690
           QS Y+T T   N+  +++RGKWFTLPP+TSTINGS LG+ L+ R  + +  ET ALKWVL
Sbjct: 37  QSQYNTSTKGQNHYENDKRGKWFTLPPYTSTINGSVLGKALSTRIPAKSASETTALKWVL 96

Query: 689 QCCPGLPRNLIQKIFRLRQVRRKSPGMESSDNG-QGQEIKLKRVAAKDSLNLGDQIFLPI 513
           +CCP LPRNL+QK+FRLRQVRR+S  MES + G QGQE +LKRVAAKDS+++GD+IFLPI
Sbjct: 97  RCCPELPRNLVQKLFRLRQVRRESSVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPI 156

Query: 512 SVQESPSRKEDCPCTEDEVKYIQSLELYKDPAIIVVNKPPGMPVQGGIGIKRSIDELAAT 333
           SV+  P+ K+DC C+E+E  +I+ LELYKD AIIVVNKPPGMPVQGGIGIKRS+DEL+A+
Sbjct: 157 SVKALPAEKQDCHCSEEETNFIRGLELYKDDAIIVVNKPPGMPVQGGIGIKRSLDELSAS 216

Query: 332 CLTYDYSEPPRLVHRLDRDSSGILVLGRNQTSATVLHSIFREKTFRASKDDNDNEKRILQ 153
           C + DYSEPPRLVHRLDRD SGILV+GR QTSATVLH+IFREKT  AS DD  +++RILQ
Sbjct: 217 CFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGDKRRILQ 276

Query: 152 RWYWALVIGTPRCSQGVISAPLGKVVVDNGKSDRITVVNNDQFISSQHAV 3
           R YWALVIG+PR  +G+ISAPLGKVVVDNGKSDRITVV N Q +SSQHAV
Sbjct: 277 RKYWALVIGSPRRQKGLISAPLGKVVVDNGKSDRITVVENSQNLSSQHAV 326


>XP_007199809.1 hypothetical protein PRUPE_ppa004969mg [Prunus persica] ONH91757.1
           hypothetical protein PRUPE_8G135400 [Prunus persica]
          Length = 481

 Score =  400 bits (1029), Expect = e-134
 Identities = 210/327 (64%), Positives = 259/327 (79%), Gaps = 21/327 (6%)
 Frame = -3

Query: 920 PPYSALYSGSRLSMSSFHHHQSHYSTKTHINNNDERRGKWFTLPPFTSTINGSALGRQLA 741
           PP S   S +RL +S+FH+ +S+ +T+T   + ++R  KWFTLPPFT+TINGSALG++L+
Sbjct: 14  PPPS---STARLCISAFHNWRSYATTETFHEDREKRGEKWFTLPPFTATINGSALGKELS 70

Query: 740 -----GR--------SKSPTPETKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESS 600
                GR        + + +  T ALKWV +CCP LPR+L+QK+FRLRQVRR+S  ME S
Sbjct: 71  RNRSYGRDVITKTATASTTSTTTTALKWVTRCCPELPRSLVQKLFRLRQVRRESCDMECS 130

Query: 599 DNG-QGQEIKLKRVAAKDSLNLGDQIFLPISVQESPSRKEDCP-------CTEDEVKYIQ 444
             G +  E  LKRVAAKDS+N+GD+I LP+SVQE P+ K++ P       C+E+EV +I+
Sbjct: 131 GEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIR 190

Query: 443 SLELYKDPAIIVVNKPPGMPVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDSSGI 264
           SLELYKDPAIIV+NKPPGMPVQGGIGIKRS+DELAA CL+YD+SEPPRLVHRLDRDSSGI
Sbjct: 191 SLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGI 250

Query: 263 LVLGRNQTSATVLHSIFREKTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVISAPLG 84
           LV+GR QTSATVLHSIFREKTF AS D+ D+ KRILQR YWALVIG+PR  +G+ISAPLG
Sbjct: 251 LVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLG 310

Query: 83  KVVVDNGKSDRITVVNNDQFISSQHAV 3
           KVVVDNGKSDRIT+VN+ Q + SQHA+
Sbjct: 311 KVVVDNGKSDRITIVNDSQTLPSQHAI 337


>XP_007199810.1 hypothetical protein PRUPE_ppa004969mg [Prunus persica] ONH91758.1
           hypothetical protein PRUPE_8G135400 [Prunus persica]
          Length = 483

 Score =  400 bits (1029), Expect = e-134
 Identities = 210/327 (64%), Positives = 259/327 (79%), Gaps = 21/327 (6%)
 Frame = -3

Query: 920 PPYSALYSGSRLSMSSFHHHQSHYSTKTHINNNDERRGKWFTLPPFTSTINGSALGRQLA 741
           PP S   S +RL +S+FH+ +S+ +T+T   + ++R  KWFTLPPFT+TINGSALG++L+
Sbjct: 14  PPPS---STARLCISAFHNWRSYATTETFHEDREKRGEKWFTLPPFTATINGSALGKELS 70

Query: 740 -----GR--------SKSPTPETKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESS 600
                GR        + + +  T ALKWV +CCP LPR+L+QK+FRLRQVRR+S  ME S
Sbjct: 71  RNRSYGRDVITKTATASTTSTTTTALKWVTRCCPELPRSLVQKLFRLRQVRRESCDMECS 130

Query: 599 DNG-QGQEIKLKRVAAKDSLNLGDQIFLPISVQESPSRKEDCP-------CTEDEVKYIQ 444
             G +  E  LKRVAAKDS+N+GD+I LP+SVQE P+ K++ P       C+E+EV +I+
Sbjct: 131 GEGVEALERPLKRVAAKDSMNVGDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIR 190

Query: 443 SLELYKDPAIIVVNKPPGMPVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDSSGI 264
           SLELYKDPAIIV+NKPPGMPVQGGIGIKRS+DELAA CL+YD+SEPPRLVHRLDRDSSGI
Sbjct: 191 SLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGI 250

Query: 263 LVLGRNQTSATVLHSIFREKTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVISAPLG 84
           LV+GR QTSATVLHSIFREKTF AS D+ D+ KRILQR YWALVIG+PR  +G+ISAPLG
Sbjct: 251 LVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLG 310

Query: 83  KVVVDNGKSDRITVVNNDQFISSQHAV 3
           KVVVDNGKSDRIT+VN+ Q + SQHA+
Sbjct: 311 KVVVDNGKSDRITIVNDSQTLPSQHAI 337


>XP_008236380.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Prunus
           mume]
          Length = 483

 Score =  397 bits (1021), Expect = e-133
 Identities = 210/327 (64%), Positives = 257/327 (78%), Gaps = 21/327 (6%)
 Frame = -3

Query: 920 PPYSALYSGSRLSMSSFHHHQSHYSTKTHINNNDERRGKWFTLPPFTSTINGSALGRQLA 741
           PP SA    +RL +S+FH+ +S+ +T+T   + ++R  KWFTLPPFT+TINGSALG++L+
Sbjct: 15  PPSSA----ARLCISAFHNWRSYATTETFHEDREKRGEKWFTLPPFTATINGSALGKELS 70

Query: 740 -----GR--------SKSPTPETKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESS 600
                GR        + + +  T ALKWV +CCP LPR+L+QK+FRLRQVRR+S  ME S
Sbjct: 71  RNRSYGRDVITKTATTSTTSTTTTALKWVTRCCPELPRSLVQKLFRLRQVRRESCDMECS 130

Query: 599 DNG-QGQEIKLKRVAAKDSLNLGDQIFLPISVQESPSRKED-------CPCTEDEVKYIQ 444
             G +  E  LKRVAAKDS+N+GD+I LPISVQE P+ K++       C C+E+EV +I+
Sbjct: 131 GEGVEALERPLKRVAAKDSMNVGDRIHLPISVQEFPNDKQELPNDKKECHCSEEEVTFIR 190

Query: 443 SLELYKDPAIIVVNKPPGMPVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDSSGI 264
           SLELYKDPAIIV+NKPPGMPVQGGIGIKRS+DELAA CL+YD+SE PRLVHRLDRDSSGI
Sbjct: 191 SLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAACLSYDFSESPRLVHRLDRDSSGI 250

Query: 263 LVLGRNQTSATVLHSIFREKTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVISAPLG 84
           LV+GR QTSATVLHSIFREKTF AS D  D+ KRILQR YWALVIG+PR  +G+ISAPLG
Sbjct: 251 LVMGRTQTSATVLHSIFREKTFGASNDVIDDAKRILQRRYWALVIGSPRQRKGLISAPLG 310

Query: 83  KVVVDNGKSDRITVVNNDQFISSQHAV 3
           KVVVDNGKSDRIT+VN+ Q + SQHA+
Sbjct: 311 KVVVDNGKSDRITIVNDSQTLPSQHAI 337


>XP_011001172.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
           [Populus euphratica]
          Length = 475

 Score =  396 bits (1018), Expect = e-133
 Identities = 204/294 (69%), Positives = 244/294 (82%), Gaps = 8/294 (2%)
 Frame = -3

Query: 860 QSHYSTKTHINNN--DERRGKWFTLPPFTSTINGSALGRQLAGRSKSPTP-ETKALKWVL 690
           QS Y+T T   N+  +++RGKWFTLPP+TSTINGS LG+ L+ R  + +  ET ALKWVL
Sbjct: 37  QSQYNTSTKGQNHYENDKRGKWFTLPPYTSTINGSVLGKALSTRIPAKSASETTALKWVL 96

Query: 689 QCCPGLPRNLIQKIFRLRQVRRKSPGMESSDNG-QGQEIKLKRVAAKDSLNLGDQIFLPI 513
           +CCP LPRNL+QK+FRLRQVRR+S  MES + G QGQE +LKRVAAKDS+++GD+IFLPI
Sbjct: 97  RCCPELPRNLVQKLFRLRQVRRESSVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPI 156

Query: 512 SVQESPSRKEDCPCTEDEVKYIQSLELYKDPAIIVVNKPPGMPVQGGIGIKRSIDELAAT 333
           SV+  P+ K+DC C+E+E  +I+ LELYKD AIIVVNKPPGMPVQGGIGIKRS+DEL+A+
Sbjct: 157 SVKALPAEKQDCHCSEEETNFIRGLELYKDDAIIVVNKPPGMPVQGGIGIKRSLDELSAS 216

Query: 332 CLTYDYSEPPRLVHRLDRDSSGILVLGRNQTSATVLHSIFREKTFRASKD----DNDNEK 165
           C + DYSEPPRLVHRLDRD SGILV+GR QTSATVLH+IFREKT  AS D    D  +++
Sbjct: 217 CFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDVSSTDVGDKR 276

Query: 164 RILQRWYWALVIGTPRCSQGVISAPLGKVVVDNGKSDRITVVNNDQFISSQHAV 3
           RILQR YWALVIG+PR  +G+ISAPLGKVVVDNGKSDRITVV N Q +SSQHAV
Sbjct: 277 RILQRKYWALVIGSPRRQKGLISAPLGKVVVDNGKSDRITVVENSQNLSSQHAV 330


>XP_010096290.1 RNA pseudourine synthase 4 [Morus notabilis] EXB63685.1 RNA
           pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  388 bits (996), Expect = e-129
 Identities = 197/316 (62%), Positives = 245/316 (77%), Gaps = 9/316 (2%)
 Frame = -3

Query: 923 TPPYSALYSGSRLSMSSFHHHQSHYSTKTHINNNDERRGKWFTLPPFTSTINGSALGRQL 744
           +PP +A +  ++LS S+FH+H SHYS  +  N       KWFTLPP T+T++G+ LG+ +
Sbjct: 14  SPPRTADHCVAKLSPSTFHYHLSHYSASSEKNGT-----KWFTLPPHTATVDGAVLGKAI 68

Query: 743 AGRSK--------SPTPETKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESSDNG- 591
           AG           S +  T ALKWV++CCP LPR+L+QK+FRLRQVRR+S  +E  + G 
Sbjct: 69  AGAKDDDVKVLQASKSAATTALKWVVRCCPELPRSLVQKLFRLRQVRRESFNVEDCNAGD 128

Query: 590 QGQEIKLKRVAAKDSLNLGDQIFLPISVQESPSRKEDCPCTEDEVKYIQSLELYKDPAII 411
           Q  + +L+RV+AKDSLNLGD+IFLPISV+E P  K++C C E+EVK+I+SLELYKDPAI+
Sbjct: 129 QLGKPRLRRVSAKDSLNLGDKIFLPISVKELPVEKKECFCNEEEVKFIRSLELYKDPAIV 188

Query: 410 VVNKPPGMPVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVLGRNQTSAT 231
           VVNKPPG+PVQGGIGIK S+D+LA TCL+YDY+EPPRLVHRLDRD SGILV+GR QTSAT
Sbjct: 189 VVNKPPGLPVQGGIGIKTSLDQLAVTCLSYDYTEPPRLVHRLDRDCSGILVMGRTQTSAT 248

Query: 230 VLHSIFREKTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVISAPLGKVVVDNGKSDR 51
           VLHSIFREKTF AS D+    K +LQR YWA VIG+PR   G+ISAPL KVV+DNGKSDR
Sbjct: 249 VLHSIFREKTFGASNDETVKGKIVLQRRYWAFVIGSPRHPNGLISAPLRKVVLDNGKSDR 308

Query: 50  ITVVNNDQFISSQHAV 3
           ITVVN    +SSQHA+
Sbjct: 309 ITVVNGSHTLSSQHAI 324


>EOX98365.1 Ribosomal pseudouridine synthase, putative [Theobroma cacao]
          Length = 477

 Score =  384 bits (986), Expect = e-128
 Identities = 195/316 (61%), Positives = 246/316 (77%), Gaps = 11/316 (3%)
 Frame = -3

Query: 920 PPYSALYSGSRLSMSSFHHHQSHYSTKTHI---------NNNDERRGKWFTLPPFTSTIN 768
           PP  A + G+ L +S+FH  + HYST   +         N+  +++ KWFTLPPFT T+N
Sbjct: 17  PP--ATHGGNGLIVSAFHQLRYHYSTTNELSAEHLKDDGNSEKKKKNKWFTLPPFTKTVN 74

Query: 767 GSALGRQLAGRSKSPTP-ETKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESSDNG 591
            S LG +L+G+  S    ET A+KWV++CCP LPR+L+QK+FRLRQVRR+S  +E + +G
Sbjct: 75  ASVLGAKLSGKPHSKAANETTAVKWVMRCCPELPRSLVQKLFRLRQVRRESHVLEVAGDG 134

Query: 590 -QGQEIKLKRVAAKDSLNLGDQIFLPISVQESPSRKEDCPCTEDEVKYIQSLELYKDPAI 414
            Q Q ++LKRV AKD+LN+GD+IFLP SV+E    K++  CTE+E+ +I+ LELYKDPAI
Sbjct: 135 CQVQTVQLKRVGAKDALNIGDRIFLPFSVREFREEKQESGCTEEELNFIRGLELYKDPAI 194

Query: 413 IVVNKPPGMPVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVLGRNQTSA 234
           IV+NKPPGMPVQGGIGIK S+D+LAA CL +DYSEPPRLVHRLDRDSSGILV+GR Q SA
Sbjct: 195 IVLNKPPGMPVQGGIGIKWSLDKLAAACLCFDYSEPPRLVHRLDRDSSGILVMGRTQMSA 254

Query: 233 TVLHSIFREKTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVISAPLGKVVVDNGKSD 54
           T+LHS+FRE+T  ASKDD DNEKRILQ+ YWALVIG+PR  +G+I APL KVVVD+GKSD
Sbjct: 255 TILHSVFREETNDASKDDVDNEKRILQKRYWALVIGSPRRPKGMIVAPLRKVVVDDGKSD 314

Query: 53  RITVVNNDQFISSQHA 6
           RITV +N Q +SSQ A
Sbjct: 315 RITVFDNSQIVSSQRA 330


>XP_012075891.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha
           curcas] XP_012075896.1 PREDICTED: RNA pseudouridine
           synthase 4, mitochondrial [Jatropha curcas]
           XP_012075899.1 PREDICTED: RNA pseudouridine synthase 4,
           mitochondrial [Jatropha curcas] XP_012075905.1
           PREDICTED: RNA pseudouridine synthase 4, mitochondrial
           [Jatropha curcas] KDP45903.1 hypothetical protein
           JCGZ_15463 [Jatropha curcas]
          Length = 470

 Score =  381 bits (978), Expect = e-127
 Identities = 195/304 (64%), Positives = 238/304 (78%), Gaps = 4/304 (1%)
 Frame = -3

Query: 902 YSGSRLSMSSFHHHQSHYSTKTHINN---NDERRGKWFTLPPFTSTINGSALGRQLA-GR 735
           YS S   +   H+  +H  T     N   +D+++GKWFTLPP+TSTI+GSALG+ L+   
Sbjct: 23  YSVSAAGILRCHYLSNHTQTSLKDQNYKIDDKKKGKWFTLPPYTSTISGSALGKALSVSI 82

Query: 734 SKSPTPETKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESSDNGQGQEIKLKRVAA 555
           S+    ET ALKWVL+CCP LPR+L+QK+FRLRQVRR+S  +      Q +E K+KRVAA
Sbjct: 83  SEKLANETTALKWVLRCCPELPRSLVQKLFRLRQVRRESSNLRD----QAEEQKVKRVAA 138

Query: 554 KDSLNLGDQIFLPISVQESPSRKEDCPCTEDEVKYIQSLELYKDPAIIVVNKPPGMPVQG 375
           KD +++GD+IFLPI+VQ  PS K+     ++ V +I+SLELYKD  IIVVNKPPG+PVQG
Sbjct: 139 KDLMSIGDRIFLPITVQALPSEKQQNVYNQEAVNFIRSLELYKDDIIIVVNKPPGIPVQG 198

Query: 374 GIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVLGRNQTSATVLHSIFREKTFR 195
           GIGIKRS+DELAA+CL+YDYSEPPRLVHRLDRDSSGILV+GR QTS TVLHS+FREKTF 
Sbjct: 199 GIGIKRSLDELAASCLSYDYSEPPRLVHRLDRDSSGILVMGRTQTSTTVLHSVFREKTFA 258

Query: 194 ASKDDNDNEKRILQRWYWALVIGTPRCSQGVISAPLGKVVVDNGKSDRITVVNNDQFISS 15
           AS DD  + +RILQR YWALVIG+PRC +G+ISAPLGKV+VDNGKSDRITV+ N    SS
Sbjct: 259 ASNDDIGDRRRILQRKYWALVIGSPRCQKGLISAPLGKVLVDNGKSDRITVIENVHNTSS 318

Query: 14  QHAV 3
           QHAV
Sbjct: 319 QHAV 322


>XP_007042534.2 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
           [Theobroma cacao]
          Length = 477

 Score =  380 bits (977), Expect = e-127
 Identities = 193/316 (61%), Positives = 245/316 (77%), Gaps = 11/316 (3%)
 Frame = -3

Query: 920 PPYSALYSGSRLSMSSFHHHQSHYSTKTHI---------NNNDERRGKWFTLPPFTSTIN 768
           PP  A + G+ L +S+FH  + HYST   +         N+  +++ KWFTLPPFT T+N
Sbjct: 17  PP--ATHGGNGLIVSAFHQLRYHYSTTNELSAEHLKDDGNSEKKKKNKWFTLPPFTKTVN 74

Query: 767 GSALGRQLAGRSKSPTP-ETKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESSDNG 591
            S L  +L+G+  S    ET A+KWV++CCP LPR+L+QK+FRLRQVRR+S  +E + +G
Sbjct: 75  ASVLAAKLSGKPHSKAANETTAVKWVMRCCPELPRSLVQKLFRLRQVRRESHVLEVAGDG 134

Query: 590 -QGQEIKLKRVAAKDSLNLGDQIFLPISVQESPSRKEDCPCTEDEVKYIQSLELYKDPAI 414
            Q Q ++LKRV AKD+LN+GD+IFLP SV+E    K++  CTE+E+ +I+ LELYKDPAI
Sbjct: 135 CQVQTVQLKRVGAKDALNIGDRIFLPFSVREFREEKQESGCTEEELNFIRGLELYKDPAI 194

Query: 413 IVVNKPPGMPVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVLGRNQTSA 234
           IV+NKPPGMPVQGGIGIK S+D+LAA CL +DYSEPPRLVHRLDRDSSGILV+GR Q SA
Sbjct: 195 IVLNKPPGMPVQGGIGIKWSLDKLAAACLCFDYSEPPRLVHRLDRDSSGILVMGRTQMSA 254

Query: 233 TVLHSIFREKTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVISAPLGKVVVDNGKSD 54
           T+LHS+FRE+T  ASKDD DNEKRILQ+ YWALVIG+PR  +G+I APL +VVVD+GKSD
Sbjct: 255 TILHSVFREETNDASKDDVDNEKRILQKRYWALVIGSPRRPKGMIVAPLRRVVVDDGKSD 314

Query: 53  RITVVNNDQFISSQHA 6
           RITV +N Q +SSQ A
Sbjct: 315 RITVFDNSQIVSSQRA 330


>XP_015892750.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Ziziphus
            jujuba]
          Length = 486

 Score =  378 bits (971), Expect = e-125
 Identities = 200/330 (60%), Positives = 244/330 (73%), Gaps = 22/330 (6%)
 Frame = -3

Query: 926  QTPPYSALYSGSRLSMSSFHHHQSHYST------KTHINNNDERRGKWFTLPPFTSTING 765
            ++P    +  G+RL  S FH  +SHYS+          N  D    KWFTLPP+TST++G
Sbjct: 13   RSPLNDTVLDGARLFFSPFHEWRSHYSSIAPETLTQEENPGDNNSNKWFTLPPYTSTVDG 72

Query: 764  SALGRQLA------------GRSKSPTP---ETKALKWVLQCCPGLPRNLIQKIFRLRQV 630
              LG+++A            GR  +  P    T ALKWV++CCP LPR+L+QK+FRLRQV
Sbjct: 73   GILGKEIARNRLENKNDAAIGRGAANPPYSSSTTALKWVVRCCPELPRSLVQKLFRLRQV 132

Query: 629  RRKSPGMESSDNGQG-QEIKLKRVAAKDSLNLGDQIFLPISVQESPSRKEDCPCTEDEVK 453
            RR+S  +  S+ G   Q+ +L+RV    S NLGD+I+LPISVQE P  K++  C E+EV 
Sbjct: 133  RRESCDIGHSEMGDELQKPRLRRVITVFSYNLGDRIYLPISVQEFPVDKKEYHCNEEEVS 192

Query: 452  YIQSLELYKDPAIIVVNKPPGMPVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDS 273
            +I+SLELYKDPAIIVVNKPPGMPVQGGIGIKRS+DELAATCL+YD  EPPRLVHRLDRDS
Sbjct: 193  FIRSLELYKDPAIIVVNKPPGMPVQGGIGIKRSLDELAATCLSYDCLEPPRLVHRLDRDS 252

Query: 272  SGILVLGRNQTSATVLHSIFREKTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVISA 93
            SGILV+GR QTSATVLH+IFREKTF AS D+ DN KRILQR YWALVIG+PR  +G ISA
Sbjct: 253  SGILVMGRTQTSATVLHTIFREKTFGASHDEIDNVKRILQRRYWALVIGSPRHRKGFISA 312

Query: 92   PLGKVVVDNGKSDRITVVNNDQFISSQHAV 3
            PL KVV+DNGKSDRITV++N Q ++SQHA+
Sbjct: 313  PLRKVVLDNGKSDRITVMHNSQTLASQHAI 342


>XP_018827853.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
           [Juglans regia]
          Length = 476

 Score =  377 bits (968), Expect = e-125
 Identities = 197/308 (63%), Positives = 244/308 (79%), Gaps = 17/308 (5%)
 Frame = -3

Query: 875 SFHHHQSHYSTKTHI---NNNDERRGKWFTLPPFTSTINGSALGRQLAGRSKSP------ 723
           + H  +S+Y+T T     NN+D    KWFTLPPFT T+NG+A G++++ R+++P      
Sbjct: 31  ALHVLRSYYATGTDTKEGNNSD----KWFTLPPFTPTVNGAAFGKEIS-RNRAPLKSGVT 85

Query: 722 ------TPETKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESS--DNGQGQEIKLK 567
                 +  T ALKWVL+CCP LPR+L+QK+FRLRQVRR+S  + S+  D    QE +LK
Sbjct: 86  TSATSTSTTTTALKWVLRCCPDLPRSLVQKLFRLRQVRRESNDVGSTCVDAQVQQERRLK 145

Query: 566 RVAAKDSLNLGDQIFLPISVQESPSRKEDCPCTEDEVKYIQSLELYKDPAIIVVNKPPGM 387
           RV+AKDS+N+GD+IFLPI+VQE P  K+DC C E+E  +++SL LYKDPAI+VVNKPPGM
Sbjct: 146 RVSAKDSMNVGDRIFLPITVQEFPFEKQDCHCNEEEANFVRSLVLYKDPAIVVVNKPPGM 205

Query: 386 PVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVLGRNQTSATVLHSIFRE 207
           PVQGGIGIK+S+D LAATCLTY+YSE PRLVHRLDRDSSGILV+GR QTSA VLHSIFRE
Sbjct: 206 PVQGGIGIKQSLDGLAATCLTYNYSETPRLVHRLDRDSSGILVMGRTQTSAAVLHSIFRE 265

Query: 206 KTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVISAPLGKVVVDNGKSDRITVVNNDQ 27
           KTF A KDD DNE RIL+R YWALVIG+PR  +G+IS PLGKVVVDNGKSDRIT+V+N Q
Sbjct: 266 KTFGA-KDDVDNEVRILERRYWALVIGSPRRQKGLISVPLGKVVVDNGKSDRITIVDNAQ 324

Query: 26  FISSQHAV 3
            +S+QHA+
Sbjct: 325 NMSAQHAL 332


>OMO73995.1 Pseudouridine synthase, RsuA/RluB/C/D/E/F [Corchorus capsularis]
          Length = 476

 Score =  375 bits (964), Expect = e-125
 Identities = 191/314 (60%), Positives = 245/314 (78%), Gaps = 11/314 (3%)
 Frame = -3

Query: 911 SALYSGSRLSMSSFHHHQSHYST---------KTHINNNDERRGKWFTLPPFTSTINGSA 759
           SA    S L +S+ +  +SH+ST         +  +N+  ++R +W TLPPFT T++ S 
Sbjct: 17  SATAGSSELVISALNQLRSHFSTTPELSTGHLENEVNSEKKKRSEWLTLPPFTKTVSASV 76

Query: 758 LGRQLAGRSK-SPTPETKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESSDNG-QG 585
           LG +LAG+    P  ET ALKWV++CCP LPR+L+QK+FRLRQVRR+S  +E S++G Q 
Sbjct: 77  LGAKLAGKHHLKPADETTALKWVVRCCPELPRSLVQKLFRLRQVRRESHSIEVSEDGCQV 136

Query: 584 QEIKLKRVAAKDSLNLGDQIFLPISVQESPSRKEDCPCTEDEVKYIQSLELYKDPAIIVV 405
           Q+++LKRV AKDSLN+GD+IFLP SV+E    K++   TE+EVK++QSLELYKD AIIV+
Sbjct: 137 QKVQLKRVGAKDSLNIGDRIFLPNSVREFSEEKKENGYTEEEVKFMQSLELYKDSAIIVL 196

Query: 404 NKPPGMPVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVLGRNQTSATVL 225
           NKPPGMPVQGGIGIK S+DELAA CL +DY EPPRLVHRLDRDSSGILV+GR Q SA +L
Sbjct: 197 NKPPGMPVQGGIGIKWSLDELAAACLCFDYPEPPRLVHRLDRDSSGILVMGRTQMSAAIL 256

Query: 224 HSIFREKTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVISAPLGKVVVDNGKSDRIT 45
           HSIFRE+T  +SK D DNEKRIL++ YWALVIG+PRC +G+I+APL KVVVD+GKSDRIT
Sbjct: 257 HSIFREETISSSKHDVDNEKRILRKRYWALVIGSPRCPKGMITAPLRKVVVDDGKSDRIT 316

Query: 44  VVNNDQFISSQHAV 3
           V ++ + +SSQ A+
Sbjct: 317 VFDDTKILSSQCAI 330


>XP_006486999.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
           [Citrus sinensis] XP_006487000.1 PREDICTED: RNA
           pseudouridine synthase 4, mitochondrial isoform X1
           [Citrus sinensis]
          Length = 362

 Score =  370 bits (951), Expect = e-124
 Identities = 183/212 (86%), Positives = 200/212 (94%), Gaps = 1/212 (0%)
 Frame = -3

Query: 635 QVRRKSPGMESSDN-GQGQEIKLKRVAAKDSLNLGDQIFLPISVQESPSRKEDCPCTEDE 459
           QVRR+SP ++SS N G  QEIKLKRVAAKDSL LGD+IFLPIS+QESPSRKE CPCTE+E
Sbjct: 5   QVRRESPSLDSSANEGHEQEIKLKRVAAKDSLKLGDRIFLPISIQESPSRKEKCPCTEEE 64

Query: 458 VKYIQSLELYKDPAIIVVNKPPGMPVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDR 279
           V++IQSLELYKD AIIV+NKP GMPVQGGIGI+RSIDELAATCLTYDYSEPPRLVHRLDR
Sbjct: 65  VEFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDR 124

Query: 278 DSSGILVLGRNQTSATVLHSIFREKTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVI 99
           DSSGILV+GR QTSATVLHSIFREKTF ASK+DNDNEK+ILQRWYWALV+GTPRCS+GVI
Sbjct: 125 DSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKKILQRWYWALVVGTPRCSKGVI 184

Query: 98  SAPLGKVVVDNGKSDRITVVNNDQFISSQHAV 3
           SAPLGKVVVDNGKSDRITVVNNDQ +S+QHAV
Sbjct: 185 SAPLGKVVVDNGKSDRITVVNNDQIMSAQHAV 216


>XP_002282614.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
           [Vitis vinifera] CBI40257.3 unnamed protein product,
           partial [Vitis vinifera]
          Length = 476

 Score =  373 bits (957), Expect = e-123
 Identities = 190/308 (61%), Positives = 240/308 (77%), Gaps = 10/308 (3%)
 Frame = -3

Query: 896 GSRLSMSSFHHHQSHYSTKTHINN--NDERRGKWFTLPPFTSTINGSALGRQLAGR---- 735
           G    +S+    +S ++T     +  +  ++GKWFTLP FT  ++ S+LG+ L+G     
Sbjct: 23  GDMFCISALDQQRSCFATSNDAVSEAHKSKKGKWFTLPAFTPVVDASSLGKVLSGHRTDL 82

Query: 734 ---SKSPTPETKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESSDNG-QGQEIKLK 567
              + +    T ALKWV++CCP LPR+L+QK+FRLRQVRR+S  M +SD G Q QE +LK
Sbjct: 83  NTGNTTAGASTTALKWVVRCCPQLPRSLVQKLFRLRQVRRESYNMITSDIGVQNQEHRLK 142

Query: 566 RVAAKDSLNLGDQIFLPISVQESPSRKEDCPCTEDEVKYIQSLELYKDPAIIVVNKPPGM 387
           RVAAKD +NLGDQI LPI+V+E PS K +  C ++E+ ++ +LELYKDPAIIVVNKPPG+
Sbjct: 143 RVAAKDLMNLGDQILLPITVEEFPSEKHEYHCNDEEINFVHNLELYKDPAIIVVNKPPGL 202

Query: 386 PVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVLGRNQTSATVLHSIFRE 207
           PVQGGIGIKRS+DELAAT L YD SEPPRLVHRLDRDSSGIL++GR QTSAT+LHSIFRE
Sbjct: 203 PVQGGIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFRE 262

Query: 206 KTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVISAPLGKVVVDNGKSDRITVVNNDQ 27
           KTF AS +D D +KRILQR YWALVIG+PR  +G+ISAPLGKVVVD+GKS+RIT+V+N Q
Sbjct: 263 KTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQ 322

Query: 26  FISSQHAV 3
            +SSQHA+
Sbjct: 323 TMSSQHAI 330


>XP_012450617.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Gossypium
           raimondii] KJB12280.1 hypothetical protein
           B456_002G009500 [Gossypium raimondii]
          Length = 479

 Score =  373 bits (957), Expect = e-123
 Identities = 197/317 (62%), Positives = 242/317 (76%), Gaps = 14/317 (4%)
 Frame = -3

Query: 911 SALYSGSRLSMSSFHHHQSHYSTKTHI----NNNDERRGKWFTLPPFTSTINGSALGRQL 744
           SA   G+   +++ +H + HYST T      N+  ++  KWFTLPPF  T+N S LG +L
Sbjct: 17  SADDGGTGFIIAAIYHLRPHYSTTTEFSDEGNSEKKKESKWFTLPPFAKTVNASELGAKL 76

Query: 743 AGRS--KSPTP------ETKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESSDNG- 591
           A ++  KS T       ET ALKWVL+CCP LPRNL+QK+FRLRQVRR+S  ME +D+G 
Sbjct: 77  ARKNHLKSATSAETSAYETTALKWVLKCCPELPRNLVQKLFRLRQVRRESIAMEVTDDGC 136

Query: 590 QGQEIKLKRVAAKDSLNLGDQIFLPISVQESPSRKEDCPCTEDEVKYIQSLELYKDPAII 411
           Q Q+I+LKRV AKDSLN+GD+IFLPISV+E P  K +  CT++E  +I+SLELYKD AII
Sbjct: 137 QVQKIQLKRVGAKDSLNIGDKIFLPISVREVPEEKHEHDCTDEESNFIRSLELYKDTAII 196

Query: 410 VVNKPPGMPVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVLGRNQTSAT 231
           V+NKPPGMPVQGGIGIK S+DELAA  L YDYSE PRLVHRLDRD SGILV+GR Q SA 
Sbjct: 197 VLNKPPGMPVQGGIGIKWSLDELAAAWLRYDYSESPRLVHRLDRDCSGILVMGRTQMSAA 256

Query: 230 VLHSIFREKTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVISAPLGKVVVDNGKSDR 51
           +LHS+FRE+T  ASK D+DNEKR+LQ+ YWALVIG+PR  +G ISAPL KVVVD+GKSDR
Sbjct: 257 ILHSVFREETLGASKHDSDNEKRVLQKRYWALVIGSPRRPKGTISAPLRKVVVDDGKSDR 316

Query: 50  ITVV-NNDQFISSQHAV 3
           ITV  +N+  +SSQ A+
Sbjct: 317 ITVFEHNNTILSSQRAI 333


>XP_016715765.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like
           [Gossypium hirsutum]
          Length = 479

 Score =  371 bits (953), Expect = e-123
 Identities = 197/317 (62%), Positives = 241/317 (76%), Gaps = 14/317 (4%)
 Frame = -3

Query: 911 SALYSGSRLSMSSFHHHQSHYSTKTHI----NNNDERRGKWFTLPPFTSTINGSALGRQL 744
           SA   G+   +++ +H + HYST T      N+  ++  KWFTLPPF  T+N S LG +L
Sbjct: 17  SADDGGTGFIITAIYHLRPHYSTTTEFSDEGNSEKKKESKWFTLPPFAKTVNASELGAKL 76

Query: 743 AGRS--KSPTP------ETKALKWVLQCCPGLPRNLIQKIFRLRQVRRKSPGMESSDNG- 591
           A ++  KS T       ET ALKWVL+CCP LPRNL+QK+FRLRQVRR+S  ME +D+G 
Sbjct: 77  ARKNHLKSATSAETSAYETTALKWVLKCCPELPRNLVQKLFRLRQVRRESIAMEVTDDGC 136

Query: 590 QGQEIKLKRVAAKDSLNLGDQIFLPISVQESPSRKEDCPCTEDEVKYIQSLELYKDPAII 411
           Q Q+I+LKRV AKDSLN+GD+IFLPISV E P  K +  CT++E  +I+SLELYKD AII
Sbjct: 137 QVQKIQLKRVGAKDSLNIGDKIFLPISVCEVPEEKHEHDCTDEESNFIRSLELYKDTAII 196

Query: 410 VVNKPPGMPVQGGIGIKRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVLGRNQTSAT 231
           V+NKPPGMPVQGGIGIK S+DELAA  L YDYSE PRLVHRLDRD SGILV+GR Q SA 
Sbjct: 197 VLNKPPGMPVQGGIGIKWSLDELAAAWLRYDYSESPRLVHRLDRDCSGILVMGRTQMSAA 256

Query: 230 VLHSIFREKTFRASKDDNDNEKRILQRWYWALVIGTPRCSQGVISAPLGKVVVDNGKSDR 51
           +LHS+FRE+T  ASK D+DNEKR+LQ+ YWALVIG+PR  +G ISAPL KVVVD+GKSDR
Sbjct: 257 ILHSVFREETLGASKHDSDNEKRVLQKRYWALVIGSPRRPKGTISAPLRKVVVDDGKSDR 316

Query: 50  ITVV-NNDQFISSQHAV 3
           ITV  +N+  +SSQ A+
Sbjct: 317 ITVFEHNNTILSSQRAI 333