BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Phellodendron21_contig00036421
         (755 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KDO63581.1 hypothetical protein CISIN_1g0005253mg, partial [Citr...   418   e-139
XP_006477376.1 PREDICTED: DNA-directed RNA polymerase IV subunit...   422   e-134
XP_006440521.1 hypothetical protein CICLE_v10018489mg [Citrus cl...   421   e-134
XP_018820498.1 PREDICTED: DNA-directed RNA polymerase IV subunit...   331   e-101
XP_018820497.1 PREDICTED: DNA-directed RNA polymerase IV subunit...   331   e-101
XP_012087018.1 PREDICTED: DNA-directed RNA polymerase IV subunit...   327   1e-99
EEF51083.1 DNA-directed RNA polymerase, putative [Ricinus communis]   325   3e-99
XP_015576105.1 PREDICTED: DNA-directed RNA polymerase IV subunit...   325   4e-99
OAY56577.1 hypothetical protein MANES_02G028200 [Manihot esculen...   325   6e-99
XP_015871441.1 PREDICTED: DNA-directed RNA polymerase IV subunit...   305   6e-97
GAV79426.1 RNA_pol_Rpb1_2 domain-containing protein/RNA_pol_Rpb1...   314   4e-95
XP_017973942.1 PREDICTED: DNA-directed RNA polymerase IV subunit...   308   6e-94
XP_012476049.1 PREDICTED: DNA-directed RNA polymerase IV subunit...   308   1e-93
XP_016717099.1 PREDICTED: DNA-directed RNA polymerase IV subunit...   308   2e-93
XP_016713422.1 PREDICTED: DNA-directed RNA polymerase IV subunit...   308   2e-93
XP_012476048.1 PREDICTED: DNA-directed RNA polymerase IV subunit...   308   2e-93
XP_017973941.1 PREDICTED: DNA-directed RNA polymerase IV subunit...   308   2e-93
XP_008238796.1 PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA ...   308   4e-93
KJB25756.1 hypothetical protein B456_004G207300 [Gossypium raimo...   308   4e-93
XP_016717097.1 PREDICTED: DNA-directed RNA polymerase IV subunit...   308   4e-93

>KDO63581.1 hypothetical protein CISIN_1g0005253mg, partial [Citrus sinensis]
          Length = 825

 Score =  418 bits (1075), Expect = e-139
 Identities = 208/251 (82%), Positives = 218/251 (86%)
 Frame = -3

Query: 753 SKLHLDKSSRNDSAEVRQKKSIDVSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKLRE 574
           SKLHLDKSSR DSAEVRQKK+ID+SNSSG+RW+KD+VLGKRNDDCFRMVVTGDPNIKL+E
Sbjct: 83  SKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKE 142

Query: 573 IGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVLGD 394
           IGIPC VAERLQISERLN+WNWERL+ C SFRLLEKGELYVCRKG  VRIRRIDAL LGD
Sbjct: 143 IGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGD 202

Query: 393 IIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCLHG 214
           IIYRPLTDGDIVLINRPPSIHPHSLIA           VTINPLCCSPFHGDFDGDCLHG
Sbjct: 203 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 262

Query: 213 YIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXXXX 34
           YIPQ+I ARV LTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMED V          
Sbjct: 263 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL 322

Query: 33  XMFCPHQSLSP 1
            MFCPH+ LSP
Sbjct: 323 QMFCPHRFLSP 333


>XP_006477376.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Citrus sinensis]
            XP_006477377.1 PREDICTED: DNA-directed RNA polymerase IV
            subunit 1 [Citrus sinensis] XP_006477378.1 PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Citrus
            sinensis] XP_015385387.1 PREDICTED: DNA-directed RNA
            polymerase IV subunit 1 [Citrus sinensis]
          Length = 1443

 Score =  422 bits (1084), Expect = e-134
 Identities = 209/251 (83%), Positives = 219/251 (87%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEVRQKKSIDVSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKLRE 574
            SKLHLDKSSR DSAEVRQKK+ID+SNSSG+RW+KD+VLGKRNDDCFRMVVTGDPNIKL+E
Sbjct: 281  SKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKE 340

Query: 573  IGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVLGD 394
            IGIPCHVAERLQISERLN+WNWERL+ C SFRLLEKGELYVCRKG  VRIRRIDAL LGD
Sbjct: 341  IGIPCHVAERLQISERLNSWNWERLSVCTSFRLLEKGELYVCRKGGLVRIRRIDALELGD 400

Query: 393  IIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCLHG 214
            IIYRPLTDGDIVLINRPPSIHPHSLIA           VTINPLCCSPFHGDFDGDCLHG
Sbjct: 401  IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460

Query: 213  YIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXXXX 34
            YIPQ+I ARV LTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMED V          
Sbjct: 461  YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL 520

Query: 33   XMFCPHQSLSP 1
             MFCPH+ LSP
Sbjct: 521  QMFCPHRFLSP 531


>XP_006440521.1 hypothetical protein CICLE_v10018489mg [Citrus clementina] ESR53761.1
            hypothetical protein CICLE_v10018489mg [Citrus
            clementina]
          Length = 1443

 Score =  421 bits (1081), Expect = e-134
 Identities = 209/251 (83%), Positives = 219/251 (87%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEVRQKKSIDVSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKLRE 574
            SKLHLDKSSR DSAEVRQKK+ID+SNSSG+RW+KD+VLGKRNDDCFRMVVTGDPNIKL+E
Sbjct: 281  SKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKE 340

Query: 573  IGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVLGD 394
            IGIPC VAERLQISERLN+WNWERL+ C SFRLLEKGELYVCRKG  VRIRRIDAL LGD
Sbjct: 341  IGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGD 400

Query: 393  IIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCLHG 214
            IIYRPLTDGDIVLINRPPSIHPHSLIA           VTINPLCCSPFHGDFDGDCLHG
Sbjct: 401  IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460

Query: 213  YIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXXXX 34
            YIPQ+I ARV LTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGV          
Sbjct: 461  YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVLLSHLQMQQL 520

Query: 33   XMFCPHQSLSP 1
             MFCPH+ LSP
Sbjct: 521  QMFCPHRFLSP 531


>XP_018820498.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Juglans regia] XP_018820499.1 PREDICTED: DNA-directed
            RNA polymerase IV subunit 1 isoform X2 [Juglans regia]
            XP_018820500.1 PREDICTED: DNA-directed RNA polymerase IV
            subunit 1 isoform X2 [Juglans regia] XP_018820501.1
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X2 [Juglans regia]
          Length = 1475

 Score =  331 bits (849), Expect = e-101
 Identities = 166/251 (66%), Positives = 189/251 (75%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEVRQKKSIDVSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKLRE 574
            SKL  +K        V+QKK  D S SSG+RW+KD+VLGKRND CFRMVV GDP+IKL E
Sbjct: 287  SKLSSEKLPDKFLVSVQQKKGADPSISSGLRWIKDVVLGKRNDHCFRMVVVGDPHIKLSE 346

Query: 573  IGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVLGD 394
            IGIPCH+AERLQISE LN WN+++L+ C     +EKGE+YV RKGS VR+RRI  L +GD
Sbjct: 347  IGIPCHIAERLQISESLNRWNFDKLSDCCRLCFIEKGEVYVRRKGSLVRVRRIAELQIGD 406

Query: 393  IIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCLHG 214
             IYRPL DGDI+LINRPPSIH HSLIA           ++INPLCCSPF GDFDGDCLHG
Sbjct: 407  TIYRPLNDGDILLINRPPSIHQHSLIALSVKVLPVASVLSINPLCCSPFRGDFDGDCLHG 466

Query: 213  YIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXXXX 34
            YIPQSIDARV L+ELVALD+QLIN Q+GRNLLSL QDSLTAAHL+MEDG+          
Sbjct: 467  YIPQSIDARVELSELVALDRQLINGQNGRNLLSLSQDSLTAAHLVMEDGILLNLFQMQQL 526

Query: 33   XMFCPHQSLSP 1
             MFCPHQ   P
Sbjct: 527  QMFCPHQLPPP 537


>XP_018820497.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Juglans regia]
          Length = 1544

 Score =  331 bits (849), Expect = e-101
 Identities = 166/251 (66%), Positives = 189/251 (75%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEVRQKKSIDVSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKLRE 574
            SKL  +K        V+QKK  D S SSG+RW+KD+VLGKRND CFRMVV GDP+IKL E
Sbjct: 356  SKLSSEKLPDKFLVSVQQKKGADPSISSGLRWIKDVVLGKRNDHCFRMVVVGDPHIKLSE 415

Query: 573  IGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVLGD 394
            IGIPCH+AERLQISE LN WN+++L+ C     +EKGE+YV RKGS VR+RRI  L +GD
Sbjct: 416  IGIPCHIAERLQISESLNRWNFDKLSDCCRLCFIEKGEVYVRRKGSLVRVRRIAELQIGD 475

Query: 393  IIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCLHG 214
             IYRPL DGDI+LINRPPSIH HSLIA           ++INPLCCSPF GDFDGDCLHG
Sbjct: 476  TIYRPLNDGDILLINRPPSIHQHSLIALSVKVLPVASVLSINPLCCSPFRGDFDGDCLHG 535

Query: 213  YIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXXXX 34
            YIPQSIDARV L+ELVALD+QLIN Q+GRNLLSL QDSLTAAHL+MEDG+          
Sbjct: 536  YIPQSIDARVELSELVALDRQLINGQNGRNLLSLSQDSLTAAHLVMEDGILLNLFQMQQL 595

Query: 33   XMFCPHQSLSP 1
             MFCPHQ   P
Sbjct: 596  QMFCPHQLPPP 606


>XP_012087018.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
          Length = 1453

 Score =  327 bits (837), Expect = 1e-99
 Identities = 167/252 (66%), Positives = 184/252 (73%), Gaps = 1/252 (0%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEVRQKKSID-VSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKLR 577
            SKL+ D S  ND     Q+K  D  SNSSG+RWVKD+VLGKRND+ FRMVV GDPNIKL 
Sbjct: 286  SKLNPDNSVNNDDMYALQRKINDSASNSSGLRWVKDVVLGKRNDNSFRMVVVGDPNIKLS 345

Query: 576  EIGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVLG 397
            EIGIPCH+AERLQ+SE L  WN ERL TC   RLLEKGE++V R+G+ VR+RR   L +G
Sbjct: 346  EIGIPCHIAERLQVSEHLTKWNRERLTTCCEVRLLEKGEMHVRREGNLVRVRRTKDLRIG 405

Query: 396  DIIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCLH 217
            DIIYRPL DGD VLINRPPSIH HSLIA           + INPLCC PF GDFDGDCLH
Sbjct: 406  DIIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPAAAALAINPLCCPPFRGDFDGDCLH 465

Query: 216  GYIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXXX 37
            GY+PQS+D R  L ELVALDKQL N QSGRNLLSL QDSL AAHL+MEDGV         
Sbjct: 466  GYVPQSVDTRAELCELVALDKQLTNVQSGRNLLSLNQDSLVAAHLVMEDGVFLSLFEMQQ 525

Query: 36   XXMFCPHQSLSP 1
              MFCP Q LSP
Sbjct: 526  LQMFCPRQLLSP 537


>EEF51083.1 DNA-directed RNA polymerase, putative [Ricinus communis]
          Length = 1475

 Score =  325 bits (834), Expect = 3e-99
 Identities = 163/252 (64%), Positives = 186/252 (73%), Gaps = 1/252 (0%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEVRQKKSIDVSNSS-GVRWVKDIVLGKRNDDCFRMVVTGDPNIKLR 577
            SK++ DKS  ND     Q+K  D S+SS G+RW+KD+VLGKRND+ FRMVV GDPNIK  
Sbjct: 283  SKINPDKSVNNDDYMALQRKMNDSSSSSSGLRWIKDVVLGKRNDNSFRMVVVGDPNIKFS 342

Query: 576  EIGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVLG 397
            EIGIPC +AERLQISE L TWNW++LNTC   RLLEKG+++V R+G  VR+RR   L +G
Sbjct: 343  EIGIPCPIAERLQISEHLTTWNWDKLNTCCEVRLLEKGDMHVRREGKLVRVRRTKELRIG 402

Query: 396  DIIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCLH 217
            DIIYRPL DGD VLINRPPSIH HSLIA           + INPL C+PF GDFDGDCLH
Sbjct: 403  DIIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPATSVLAINPLICAPFRGDFDGDCLH 462

Query: 216  GYIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXXX 37
            GY+PQS+D RV L ELVALDKQLIN Q+GRNLLS  QDSL AAHL+MEDGV         
Sbjct: 463  GYVPQSVDTRVELRELVALDKQLINVQNGRNLLSFSQDSLVAAHLVMEDGVLLSLQQMQQ 522

Query: 36   XXMFCPHQSLSP 1
              MFCPHQ  SP
Sbjct: 523  LQMFCPHQLFSP 534


>XP_015576105.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Ricinus
            communis]
          Length = 1485

 Score =  325 bits (834), Expect = 4e-99
 Identities = 163/252 (64%), Positives = 186/252 (73%), Gaps = 1/252 (0%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEVRQKKSIDVSNSS-GVRWVKDIVLGKRNDDCFRMVVTGDPNIKLR 577
            SK++ DKS  ND     Q+K  D S+SS G+RW+KD+VLGKRND+ FRMVV GDPNIK  
Sbjct: 288  SKINPDKSVNNDDYMALQRKMNDSSSSSSGLRWIKDVVLGKRNDNSFRMVVVGDPNIKFS 347

Query: 576  EIGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVLG 397
            EIGIPC +AERLQISE L TWNW++LNTC   RLLEKG+++V R+G  VR+RR   L +G
Sbjct: 348  EIGIPCPIAERLQISEHLTTWNWDKLNTCCEVRLLEKGDMHVRREGKLVRVRRTKELRIG 407

Query: 396  DIIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCLH 217
            DIIYRPL DGD VLINRPPSIH HSLIA           + INPL C+PF GDFDGDCLH
Sbjct: 408  DIIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPATSVLAINPLICAPFRGDFDGDCLH 467

Query: 216  GYIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXXX 37
            GY+PQS+D RV L ELVALDKQLIN Q+GRNLLS  QDSL AAHL+MEDGV         
Sbjct: 468  GYVPQSVDTRVELRELVALDKQLINVQNGRNLLSFSQDSLVAAHLVMEDGVLLSLQQMQQ 527

Query: 36   XXMFCPHQSLSP 1
              MFCPHQ  SP
Sbjct: 528  LQMFCPHQLFSP 539


>OAY56577.1 hypothetical protein MANES_02G028200 [Manihot esculenta] OAY56578.1
            hypothetical protein MANES_02G028200 [Manihot esculenta]
          Length = 1451

 Score =  325 bits (832), Expect = 6e-99
 Identities = 160/248 (64%), Positives = 183/248 (73%), Gaps = 1/248 (0%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEVRQKKSID-VSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKLR 577
            SK++ D S  N+     Q+K  D  S  SG+RW+KD+VLGKRND+ FRMVV GDPNIKL 
Sbjct: 286  SKINPDTSVNNEDIIAAQRKINDPASRPSGLRWIKDVVLGKRNDNSFRMVVVGDPNIKLS 345

Query: 576  EIGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVLG 397
            E+GIPCH+AERLQISE L  WNWE+LNTC   R+LEKG+++V R+G+ VR+R    L LG
Sbjct: 346  EVGIPCHIAERLQISEHLTAWNWEKLNTCCEVRILEKGDMHVRREGNLVRVRHTKELRLG 405

Query: 396  DIIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCLH 217
            D+IYRPL DGD VLINRPPSIH HSLIA           + INPLCC PF GDFDGDCLH
Sbjct: 406  DVIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVTSVLAINPLCCPPFRGDFDGDCLH 465

Query: 216  GYIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXXX 37
            GYIPQS+D RV L+ELVALDKQL N QSGRNLLSL QDSL AAHL+MEDGV         
Sbjct: 466  GYIPQSVDTRVELSELVALDKQLTNAQSGRNLLSLSQDSLVAAHLIMEDGVFLSLFQMQQ 525

Query: 36   XXMFCPHQ 13
              MFCPHQ
Sbjct: 526  LQMFCPHQ 533


>XP_015871441.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like, partial
            [Ziziphus jujuba]
          Length = 631

 Score =  305 bits (781), Expect = 6e-97
 Identities = 152/253 (60%), Positives = 183/253 (72%), Gaps = 2/253 (0%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEVRQKKSI--DVSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKL 580
            SKL +  +   D   + Q+KSI    S + G+RW+KD++LGKR+D CFRMVV GDPNIKL
Sbjct: 290  SKLSIGPNPSKDLV-IGQQKSIRDSPSKTCGLRWIKDVILGKRSDHCFRMVVVGDPNIKL 348

Query: 579  REIGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVL 400
             EIGIPCH+AER+ +SERLN WN ++ + C + RL+EKGE+YV R    VR+R  D L +
Sbjct: 349  NEIGIPCHIAERMHVSERLNRWNLDKSDGCWNLRLIEKGEIYVRRNNKLVRVRPTDELHI 408

Query: 399  GDIIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCL 220
            GD IYRPL+DGDI+LINRPPSIH HSLIA           V+INP+CCSPF GDFDGDCL
Sbjct: 409  GDTIYRPLSDGDILLINRPPSIHQHSLIALSVKVLPITSVVSINPICCSPFRGDFDGDCL 468

Query: 219  HGYIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXX 40
            HGY+PQS+D RV L ELVALD+QL N+QSGRNLLS  QDSLTAAHL+MED V        
Sbjct: 469  HGYVPQSVDTRVELRELVALDRQLTNRQSGRNLLSFSQDSLTAAHLIMEDSVLLNLFEMQ 528

Query: 39   XXXMFCPHQSLSP 1
               MFC HQ + P
Sbjct: 529  QLEMFCLHQRMLP 541


>GAV79426.1 RNA_pol_Rpb1_2 domain-containing protein/RNA_pol_Rpb1_3
            domain-containing protein/RNA_pol_Rpb1_1
            domain-containing protein/RNA_pol_Rpb1_4
            domain-containing protein/DUF3223 domain-containing
            protein, partial [Cephalotus follicularis]
          Length = 1513

 Score =  314 bits (805), Expect = 4e-95
 Identities = 161/251 (64%), Positives = 185/251 (73%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEVRQKKSIDVSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKLRE 574
            SK++ DKS+  D  E  +K        SG+R++KD+VLGKRND CFRMVV GDPN+KL E
Sbjct: 337  SKVYSDKSTSEDPYEALRKNKDTSFTMSGLRYMKDVVLGKRNDHCFRMVVIGDPNLKLSE 396

Query: 573  IGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVLGD 394
            IGIPCH+AE LQISE LN +N E L TC   RLLEKGE+YV RKG  VR+RR+  L LGD
Sbjct: 397  IGIPCHIAESLQISEFLNRFNLEILKTCCGLRLLEKGEIYVRRKGCLVRVRRVKDLQLGD 456

Query: 393  IIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCLHG 214
            IIYRPL+DGD VLINRPPSIH HSLIA           ++INPLCC PFHGDFDGDCLHG
Sbjct: 457  IIYRPLSDGDTVLINRPPSIHQHSLIALSVKILPTTSVLSINPLCCPPFHGDFDGDCLHG 516

Query: 213  YIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXXXX 34
            Y+ QS+++R  L ELVAL+KQLIN QSGRNLLSL QDSLTA HL+MEDGV          
Sbjct: 517  YVSQSVESRTELNELVALNKQLINGQSGRNLLSLTQDSLTALHLVMEDGVLFNLSEMQQL 576

Query: 33   XMFCPHQSLSP 1
             MFCPH+ LSP
Sbjct: 577  EMFCPHR-LSP 586


>XP_017973942.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3
            [Theobroma cacao]
          Length = 1203

 Score =  308 bits (790), Expect = 6e-94
 Identities = 160/253 (63%), Positives = 190/253 (75%), Gaps = 2/253 (0%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEV-RQKKSID-VSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKL 580
            SKLHL+K S  +SA V  QK++ D  SN SG+R++KD++LGKRND CFRMV+TG+PN+KL
Sbjct: 290  SKLHLEKPSNEESALVLAQKRNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKL 349

Query: 579  REIGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVL 400
             EIGIPCHVAERLQI+E+LN WN ERL  C   RLLEKGE++V R+G  VRIR  + L +
Sbjct: 350  SEIGIPCHVAERLQIAEQLNNWNEERLKACCDLRLLEKGEIHVRREGRLVRIRHNEKLQV 409

Query: 399  GDIIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCL 220
            GD I+RPL +GDI+LINRPPSIH HSLIA           V+INPL CSPF GDFDGDCL
Sbjct: 410  GDTIFRPLNNGDIILINRPPSIHQHSLIALSVKVLPVSSVVSINPLICSPFRGDFDGDCL 469

Query: 219  HGYIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXX 40
            HGY+PQSI ARV L ELV+L++QLIN QSGRNLLSL  DSLTAA+L+ EDGV        
Sbjct: 470  HGYVPQSIKARVELIELVSLNRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQ 529

Query: 39   XXXMFCPHQSLSP 1
               MFCP+ S  P
Sbjct: 530  QLEMFCPNHSPFP 542


>XP_012476049.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
            [Gossypium raimondii]
          Length = 1300

 Score =  308 bits (790), Expect = 1e-93
 Identities = 156/253 (61%), Positives = 188/253 (74%), Gaps = 2/253 (0%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEVR--QKKSIDVSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKL 580
            SKLH++K S  DSA +   +K     SN SG+R++KD++LGKRND CFRMV+TG+PN+KL
Sbjct: 290  SKLHVEKPSTEDSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKL 349

Query: 579  REIGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVL 400
             EIGIPCHVAE+LQI+E+LN WN ERL TC + R+LEKGE+ + R+G  VRIR  + + +
Sbjct: 350  SEIGIPCHVAEKLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQV 409

Query: 399  GDIIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCL 220
            GD IYRPL DGD VLINRPPSIH HSLIA           V+INPL CSPF GDFDGDCL
Sbjct: 410  GDTIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCL 469

Query: 219  HGYIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXX 40
            HGY+PQSI+ RV L+ELV+LD+QLIN QSGRNLLSL  DSLTAA+L+ EDGV        
Sbjct: 470  HGYVPQSINTRVELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQ 529

Query: 39   XXXMFCPHQSLSP 1
               MFCP+ S  P
Sbjct: 530  QLEMFCPNHSPLP 542


>XP_016717099.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
           [Gossypium hirsutum]
          Length = 1340

 Score =  308 bits (790), Expect = 2e-93
 Identities = 156/253 (61%), Positives = 188/253 (74%), Gaps = 2/253 (0%)
 Frame = -3

Query: 753 SKLHLDKSSRNDSAEVR--QKKSIDVSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKL 580
           SKLH++K S  DSA +   +K     SN SG+R++KD++LGKRND CFRMV+TG+PN+KL
Sbjct: 149 SKLHVEKPSTEDSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKL 208

Query: 579 REIGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVL 400
            EIGIPCHVAE+LQI+E+LN WN ERL TC + R+LEKGE+ + R+G  VRIR  + + +
Sbjct: 209 SEIGIPCHVAEKLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQV 268

Query: 399 GDIIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCL 220
           GD IYRPL DGD VLINRPPSIH HSLIA           V+INPL CSPF GDFDGDCL
Sbjct: 269 GDTIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCL 328

Query: 219 HGYIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXX 40
           HGY+PQSI+ RV L+ELV+LD+QLIN QSGRNLLSL  DSLTAA+L+ EDGV        
Sbjct: 329 HGYVPQSINTRVELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQ 388

Query: 39  XXXMFCPHQSLSP 1
              MFCP+ S  P
Sbjct: 389 QLEMFCPNHSPLP 401


>XP_016713422.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
           [Gossypium hirsutum]
          Length = 1340

 Score =  308 bits (790), Expect = 2e-93
 Identities = 156/253 (61%), Positives = 188/253 (74%), Gaps = 2/253 (0%)
 Frame = -3

Query: 753 SKLHLDKSSRNDSAEVR--QKKSIDVSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKL 580
           SKLH++K S  DSA +   +K     SN SG+R++KD++LGKRND CFRMV+TG+PN+KL
Sbjct: 149 SKLHVEKPSTEDSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKL 208

Query: 579 REIGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVL 400
            EIGIPCHVAE+LQI+E+LN WN ERL TC + R+LEKGE+ + R+G  VRIR  + + +
Sbjct: 209 SEIGIPCHVAEKLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQV 268

Query: 399 GDIIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCL 220
           GD IYRPL DGD VLINRPPSIH HSLIA           V+INPL CSPF GDFDGDCL
Sbjct: 269 GDTIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCL 328

Query: 219 HGYIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXX 40
           HGY+PQSI+ RV L+ELV+LD+QLIN QSGRNLLSL  DSLTAA+L+ EDGV        
Sbjct: 329 HGYVPQSINTRVELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQ 388

Query: 39  XXXMFCPHQSLSP 1
              MFCP+ S  P
Sbjct: 389 QLEMFCPNHSPLP 401


>XP_012476048.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
           [Gossypium raimondii]
          Length = 1340

 Score =  308 bits (790), Expect = 2e-93
 Identities = 156/253 (61%), Positives = 188/253 (74%), Gaps = 2/253 (0%)
 Frame = -3

Query: 753 SKLHLDKSSRNDSAEVR--QKKSIDVSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKL 580
           SKLH++K S  DSA +   +K     SN SG+R++KD++LGKRND CFRMV+TG+PN+KL
Sbjct: 149 SKLHVEKPSTEDSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKL 208

Query: 579 REIGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVL 400
            EIGIPCHVAE+LQI+E+LN WN ERL TC + R+LEKGE+ + R+G  VRIR  + + +
Sbjct: 209 SEIGIPCHVAEKLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQV 268

Query: 399 GDIIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCL 220
           GD IYRPL DGD VLINRPPSIH HSLIA           V+INPL CSPF GDFDGDCL
Sbjct: 269 GDTIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCL 328

Query: 219 HGYIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXX 40
           HGY+PQSI+ RV L+ELV+LD+QLIN QSGRNLLSL  DSLTAA+L+ EDGV        
Sbjct: 329 HGYVPQSINTRVELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQ 388

Query: 39  XXXMFCPHQSLSP 1
              MFCP+ S  P
Sbjct: 389 QLEMFCPNHSPLP 401


>XP_017973941.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
           [Theobroma cacao]
          Length = 1343

 Score =  308 bits (790), Expect = 2e-93
 Identities = 160/253 (63%), Positives = 190/253 (75%), Gaps = 2/253 (0%)
 Frame = -3

Query: 753 SKLHLDKSSRNDSAEV-RQKKSID-VSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKL 580
           SKLHL+K S  +SA V  QK++ D  SN SG+R++KD++LGKRND CFRMV+TG+PN+KL
Sbjct: 149 SKLHLEKPSNEESALVLAQKRNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKL 208

Query: 579 REIGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVL 400
            EIGIPCHVAERLQI+E+LN WN ERL  C   RLLEKGE++V R+G  VRIR  + L +
Sbjct: 209 SEIGIPCHVAERLQIAEQLNNWNEERLKACCDLRLLEKGEIHVRREGRLVRIRHNEKLQV 268

Query: 399 GDIIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCL 220
           GD I+RPL +GDI+LINRPPSIH HSLIA           V+INPL CSPF GDFDGDCL
Sbjct: 269 GDTIFRPLNNGDIILINRPPSIHQHSLIALSVKVLPVSSVVSINPLICSPFRGDFDGDCL 328

Query: 219 HGYIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXX 40
           HGY+PQSI ARV L ELV+L++QLIN QSGRNLLSL  DSLTAA+L+ EDGV        
Sbjct: 329 HGYVPQSIKARVELIELVSLNRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQ 388

Query: 39  XXXMFCPHQSLSP 1
              MFCP+ S  P
Sbjct: 389 QLEMFCPNHSPFP 401


>XP_008238796.1 PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
            subunit 1 [Prunus mume]
          Length = 1452

 Score =  308 bits (790), Expect = 4e-93
 Identities = 158/244 (64%), Positives = 182/244 (74%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEVRQKKSIDVSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKLRE 574
            SKL+ +K S++  +  ++    D S +SG+RW+KD+VLGKR+D CFR VV GDPNIKL E
Sbjct: 272  SKLNSEKPSKDFISAQQKNIKDDPSKTSGLRWIKDVVLGKRSDHCFRTVVVGDPNIKLSE 331

Query: 573  IGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVLGD 394
            IGIPC +AERLQISE LN WN E+L+   + RL+ KGE++V RKGS V +RR D L +GD
Sbjct: 332  IGIPCQIAERLQISENLNRWNIEKLDASCNLRLMVKGEMHVRRKGSLVWVRRTDELQMGD 391

Query: 393  IIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCLHG 214
             IYRPL+DGDIVLINRPPSIH HSLIA           V+INPLCCSPF GDFDGDCLHG
Sbjct: 392  TIYRPLSDGDIVLINRPPSIHQHSLIALSVKILPITSVVSINPLCCSPFRGDFDGDCLHG 451

Query: 213  YIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXXXX 34
            YIPQS DARV L ELVALDKQLIN QSGRNLLSL QDSLTAAHL+MEDG           
Sbjct: 452  YIPQSNDARVELRELVALDKQLINGQSGRNLLSLSQDSLTAAHLIMEDGTLLNLLEMQQL 511

Query: 33   XMFC 22
             MFC
Sbjct: 512  EMFC 515


>KJB25756.1 hypothetical protein B456_004G207300 [Gossypium raimondii]
          Length = 1478

 Score =  308 bits (790), Expect = 4e-93
 Identities = 156/253 (61%), Positives = 188/253 (74%), Gaps = 2/253 (0%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEVR--QKKSIDVSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKL 580
            SKLH++K S  DSA +   +K     SN SG+R++KD++LGKRND CFRMV+TG+PN+KL
Sbjct: 287  SKLHVEKPSTEDSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKL 346

Query: 579  REIGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVL 400
             EIGIPCHVAE+LQI+E+LN WN ERL TC + R+LEKGE+ + R+G  VRIR  + + +
Sbjct: 347  SEIGIPCHVAEKLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQV 406

Query: 399  GDIIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCL 220
            GD IYRPL DGD VLINRPPSIH HSLIA           V+INPL CSPF GDFDGDCL
Sbjct: 407  GDTIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCL 466

Query: 219  HGYIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXX 40
            HGY+PQSI+ RV L+ELV+LD+QLIN QSGRNLLSL  DSLTAA+L+ EDGV        
Sbjct: 467  HGYVPQSINTRVELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQ 526

Query: 39   XXXMFCPHQSLSP 1
               MFCP+ S  P
Sbjct: 527  QLEMFCPNHSPLP 539


>XP_016717097.1 PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium hirsutum] XP_016717098.1 PREDICTED:
            DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium hirsutum]
          Length = 1481

 Score =  308 bits (790), Expect = 4e-93
 Identities = 156/253 (61%), Positives = 188/253 (74%), Gaps = 2/253 (0%)
 Frame = -3

Query: 753  SKLHLDKSSRNDSAEVR--QKKSIDVSNSSGVRWVKDIVLGKRNDDCFRMVVTGDPNIKL 580
            SKLH++K S  DSA +   +K     SN SG+R++KD++LGKRND CFRMV+TG+PN+KL
Sbjct: 290  SKLHVEKPSTEDSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKL 349

Query: 579  REIGIPCHVAERLQISERLNTWNWERLNTCASFRLLEKGELYVCRKGSPVRIRRIDALVL 400
             EIGIPCHVAE+LQI+E+LN WN ERL TC + R+LEKGE+ + R+G  VRIR  + + +
Sbjct: 350  SEIGIPCHVAEKLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQV 409

Query: 399  GDIIYRPLTDGDIVLINRPPSIHPHSLIAXXXXXXXXXXXVTINPLCCSPFHGDFDGDCL 220
            GD IYRPL DGD VLINRPPSIH HSLIA           V+INPL CSPF GDFDGDCL
Sbjct: 410  GDTIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCL 469

Query: 219  HGYIPQSIDARVGLTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDGVXXXXXXXX 40
            HGY+PQSI+ RV L+ELV+LD+QLIN QSGRNLLSL  DSLTAA+L+ EDGV        
Sbjct: 470  HGYVPQSINTRVELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQ 529

Query: 39   XXXMFCPHQSLSP 1
               MFCP+ S  P
Sbjct: 530  QLEMFCPNHSPLP 542