BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Phellodendron21_contig00010021
         (2678 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_006470383.1 PREDICTED: DNA repair protein UVH3 isoform X3 [Ci...  1246   0.0  
XP_006470382.1 PREDICTED: DNA repair protein UVH3 isoform X2 [Ci...  1246   0.0  
XP_006470381.1 PREDICTED: DNA repair protein UVH3 isoform X1 [Ci...  1246   0.0  
XP_006446452.1 hypothetical protein CICLE_v10014025mg [Citrus cl...  1241   0.0  
EOY02333.1 DNA-repair protein UVH3, putative isoform 1 [Theobrom...   804   0.0  
XP_007031407.2 PREDICTED: DNA repair protein UVH3 [Theobroma cacao]   800   0.0  
XP_012444069.1 PREDICTED: DNA repair protein UVH3 isoform X6 [Go...   741   0.0  
XP_016749883.1 PREDICTED: DNA repair protein UVH3-like isoform X...   741   0.0  
XP_012444060.1 PREDICTED: DNA repair protein UVH3 isoform X5 [Go...   741   0.0  
XP_016749882.1 PREDICTED: DNA repair protein UVH3-like isoform X...   741   0.0  
XP_012444053.1 PREDICTED: DNA repair protein UVH3 isoform X4 [Go...   741   0.0  
KJB11471.1 hypothetical protein B456_001G260400 [Gossypium raimo...   742   0.0  
KJB11467.1 hypothetical protein B456_001G260400 [Gossypium raimo...   741   0.0  
KJB11465.1 hypothetical protein B456_001G260400 [Gossypium raimo...   741   0.0  
KJB11466.1 hypothetical protein B456_001G260400 [Gossypium raimo...   741   0.0  
KJB11470.1 hypothetical protein B456_001G260400 [Gossypium raimo...   741   0.0  
KJB11469.1 hypothetical protein B456_001G260400 [Gossypium raimo...   741   0.0  
XP_012444044.1 PREDICTED: DNA repair protein UVH3 isoform X3 [Go...   741   0.0  
XP_012444035.1 PREDICTED: DNA repair protein UVH3 isoform X2 [Go...   741   0.0  
XP_012444025.1 PREDICTED: DNA repair protein UVH3 isoform X1 [Go...   741   0.0  

>XP_006470383.1 PREDICTED: DNA repair protein UVH3 isoform X3 [Citrus sinensis]
          Length = 1485

 Score = 1246 bits (3223), Expect = 0.0
 Identities = 657/856 (76%), Positives = 711/856 (83%), Gaps = 9/856 (1%)
 Frame = -3

Query: 2676 GTIMDLKGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKND 2497
            GT M+L  VQLVKG+ L AS KGD HLT DK CS+DRS+S D VF DSS AIL + KKN+
Sbjct: 630  GTTMELTEVQLVKGRCLSASAKGDEHLTRDKMCSDDRSHSVDAVFEDSSIAILDEDKKNN 689

Query: 2496 CEAEISVLVSDKKIEIEAEMKHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKL 2317
            CEAE SVL  DKK EIE EMKH+F AEP C T+GTSD SIP+ +SSG ASIY+T IE+K 
Sbjct: 690  CEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSIPLVKSSGNASIYDTDIEQKS 749

Query: 2316 DAEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKILEE-MLILDEECMNLGDEQKKLER 2140
              E+THDT L+D KQ TG  A K  ENV AEATEKILEE M ILD E M LGDEQKKLER
Sbjct: 750  AEERTHDTCLEDSKQNTGILATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLER 809

Query: 2139 NAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGAR 1960
            NAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGAR
Sbjct: 810  NAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGAR 869

Query: 1959 SVYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVN 1780
            SVYKNIFDDRKYVETYFMQDIEK+LGLTREKLIR+ALLLGSDYTEGISGIGIVNAIEVVN
Sbjct: 870  SVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVN 929

Query: 1779 AFPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNVEGVSEFD 1600
            AFPEEDGL KFREWIESPDP ILGKFDVQTGASSRK R  +G+ DVN+AKN+V GVSEFD
Sbjct: 930  AFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFD 989

Query: 1599 ESISQFDEDKQSADYSQNM-KIFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVDKSTEP 1423
            ESISQFDEDKQSA+YSQNM KIFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVDKSTE 
Sbjct: 990  ESISQFDEDKQSAEYSQNMKKIFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVDKSTES 1049

Query: 1422 FSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNERFAKIR 1243
            FSWGKPDLFVLRKFCWDKFGWG DKSNELLVPVLKEYEKRETQLRLEAFY+FNERFAKIR
Sbjct: 1050 FSWGKPDLFVLRKFCWDKFGWGGDKSNELLVPVLKEYEKRETQLRLEAFYTFNERFAKIR 1109

Query: 1242 SNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKESVAGA 1063
            S RIKKAVKGITG+QSL   DDAGQEVSKSRKKR+NNGLENGNN+SQKA K+A+ESV+GA
Sbjct: 1110 SKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGA 1169

Query: 1062 PSNMEKSTPRQSRKRKVLKKFVSSEMENSERLALADSGAN----XXXXXXXXXXXXXXXX 895
             +NMEKS+  QSR+RKVL+KFV +EMEN ERL  A  G N                    
Sbjct: 1170 QNNMEKSSQSQSRERKVLEKFVLAEMENPERLTPAGGGRNANNVFRGNRRGKGQRVGRGR 1229

Query: 894  XXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNYCVNDPEIDDVG 715
                LCAE+SET          +QEYY+E+ E QQEV+RSTRSRKPV+Y V+DPEI DVG
Sbjct: 1230 GRRRLCAEQSETSSSDDIGSDDTQEYYSEKFEGQQEVRRSTRSRKPVDYNVDDPEIADVG 1289

Query: 714  KIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDKDYIERGGGFCIDDGE 535
            KI+S +E SN+E A+QD VHGV   ASAD SR KQHRA DPSIDKDYIERGGGFCIDD E
Sbjct: 1290 KILSNKESSNEEEAKQDSVHGVTGEASADYSRKKQHRADDPSIDKDYIERGGGFCIDDRE 1349

Query: 534  IAQPTMSPSDDPFFEAETSKDYMKMGGGFCEDESETCEDQVAAQDSVISGENPSTCLDSL 355
            I +P++SP DDPF EAE +KDYMKMGGGFC DESET EDQVAA+D V++GE+PSTCLDS 
Sbjct: 1350 IGRPSVSPCDDPFLEAEITKDYMKMGGGFCHDESETREDQVAAKDPVVTGESPSTCLDSS 1409

Query: 354  DGVDCDAGLGDSTL--GSKEAIKGSEN-NRTDTFDTELNLVHQNATSTDNVKNDADGASG 184
            DGV CD GLGDST    SKEA  G EN  RTDTFDTE N V QNATSTD+ +NDA  AS 
Sbjct: 1410 DGVHCDVGLGDSTTSSNSKEATNGLENVGRTDTFDTEPNPVVQNATSTDSARNDAGRASR 1469

Query: 183  GVLTAMTFLRRKRRRS 136
            G LTAMTFLRRKRRRS
Sbjct: 1470 GSLTAMTFLRRKRRRS 1485


>XP_006470382.1 PREDICTED: DNA repair protein UVH3 isoform X2 [Citrus sinensis]
          Length = 1531

 Score = 1246 bits (3223), Expect = 0.0
 Identities = 657/856 (76%), Positives = 711/856 (83%), Gaps = 9/856 (1%)
 Frame = -3

Query: 2676 GTIMDLKGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKND 2497
            GT M+L  VQLVKG+ L AS KGD HLT DK CS+DRS+S D VF DSS AIL + KKN+
Sbjct: 676  GTTMELTEVQLVKGRCLSASAKGDEHLTRDKMCSDDRSHSVDAVFEDSSIAILDEDKKNN 735

Query: 2496 CEAEISVLVSDKKIEIEAEMKHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKL 2317
            CEAE SVL  DKK EIE EMKH+F AEP C T+GTSD SIP+ +SSG ASIY+T IE+K 
Sbjct: 736  CEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSIPLVKSSGNASIYDTDIEQKS 795

Query: 2316 DAEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKILEE-MLILDEECMNLGDEQKKLER 2140
              E+THDT L+D KQ TG  A K  ENV AEATEKILEE M ILD E M LGDEQKKLER
Sbjct: 796  AEERTHDTCLEDSKQNTGILATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLER 855

Query: 2139 NAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGAR 1960
            NAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGAR
Sbjct: 856  NAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGAR 915

Query: 1959 SVYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVN 1780
            SVYKNIFDDRKYVETYFMQDIEK+LGLTREKLIR+ALLLGSDYTEGISGIGIVNAIEVVN
Sbjct: 916  SVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVN 975

Query: 1779 AFPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNVEGVSEFD 1600
            AFPEEDGL KFREWIESPDP ILGKFDVQTGASSRK R  +G+ DVN+AKN+V GVSEFD
Sbjct: 976  AFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFD 1035

Query: 1599 ESISQFDEDKQSADYSQNM-KIFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVDKSTEP 1423
            ESISQFDEDKQSA+YSQNM KIFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVDKSTE 
Sbjct: 1036 ESISQFDEDKQSAEYSQNMKKIFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVDKSTES 1095

Query: 1422 FSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNERFAKIR 1243
            FSWGKPDLFVLRKFCWDKFGWG DKSNELLVPVLKEYEKRETQLRLEAFY+FNERFAKIR
Sbjct: 1096 FSWGKPDLFVLRKFCWDKFGWGGDKSNELLVPVLKEYEKRETQLRLEAFYTFNERFAKIR 1155

Query: 1242 SNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKESVAGA 1063
            S RIKKAVKGITG+QSL   DDAGQEVSKSRKKR+NNGLENGNN+SQKA K+A+ESV+GA
Sbjct: 1156 SKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGA 1215

Query: 1062 PSNMEKSTPRQSRKRKVLKKFVSSEMENSERLALADSGAN----XXXXXXXXXXXXXXXX 895
             +NMEKS+  QSR+RKVL+KFV +EMEN ERL  A  G N                    
Sbjct: 1216 QNNMEKSSQSQSRERKVLEKFVLAEMENPERLTPAGGGRNANNVFRGNRRGKGQRVGRGR 1275

Query: 894  XXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNYCVNDPEIDDVG 715
                LCAE+SET          +QEYY+E+ E QQEV+RSTRSRKPV+Y V+DPEI DVG
Sbjct: 1276 GRRRLCAEQSETSSSDDIGSDDTQEYYSEKFEGQQEVRRSTRSRKPVDYNVDDPEIADVG 1335

Query: 714  KIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDKDYIERGGGFCIDDGE 535
            KI+S +E SN+E A+QD VHGV   ASAD SR KQHRA DPSIDKDYIERGGGFCIDD E
Sbjct: 1336 KILSNKESSNEEEAKQDSVHGVTGEASADYSRKKQHRADDPSIDKDYIERGGGFCIDDRE 1395

Query: 534  IAQPTMSPSDDPFFEAETSKDYMKMGGGFCEDESETCEDQVAAQDSVISGENPSTCLDSL 355
            I +P++SP DDPF EAE +KDYMKMGGGFC DESET EDQVAA+D V++GE+PSTCLDS 
Sbjct: 1396 IGRPSVSPCDDPFLEAEITKDYMKMGGGFCHDESETREDQVAAKDPVVTGESPSTCLDSS 1455

Query: 354  DGVDCDAGLGDSTL--GSKEAIKGSEN-NRTDTFDTELNLVHQNATSTDNVKNDADGASG 184
            DGV CD GLGDST    SKEA  G EN  RTDTFDTE N V QNATSTD+ +NDA  AS 
Sbjct: 1456 DGVHCDVGLGDSTTSSNSKEATNGLENVGRTDTFDTEPNPVVQNATSTDSARNDAGRASR 1515

Query: 183  GVLTAMTFLRRKRRRS 136
            G LTAMTFLRRKRRRS
Sbjct: 1516 GSLTAMTFLRRKRRRS 1531


>XP_006470381.1 PREDICTED: DNA repair protein UVH3 isoform X1 [Citrus sinensis]
          Length = 1699

 Score = 1246 bits (3223), Expect = 0.0
 Identities = 657/856 (76%), Positives = 711/856 (83%), Gaps = 9/856 (1%)
 Frame = -3

Query: 2676 GTIMDLKGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKND 2497
            GT M+L  VQLVKG+ L AS KGD HLT DK CS+DRS+S D VF DSS AIL + KKN+
Sbjct: 844  GTTMELTEVQLVKGRCLSASAKGDEHLTRDKMCSDDRSHSVDAVFEDSSIAILDEDKKNN 903

Query: 2496 CEAEISVLVSDKKIEIEAEMKHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKL 2317
            CEAE SVL  DKK EIE EMKH+F AEP C T+GTSD SIP+ +SSG ASIY+T IE+K 
Sbjct: 904  CEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSIPLVKSSGNASIYDTDIEQKS 963

Query: 2316 DAEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKILEE-MLILDEECMNLGDEQKKLER 2140
              E+THDT L+D KQ TG  A K  ENV AEATEKILEE M ILD E M LGDEQKKLER
Sbjct: 964  AEERTHDTCLEDSKQNTGILATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLER 1023

Query: 2139 NAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGAR 1960
            NAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGAR
Sbjct: 1024 NAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGAR 1083

Query: 1959 SVYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVN 1780
            SVYKNIFDDRKYVETYFMQDIEK+LGLTREKLIR+ALLLGSDYTEGISGIGIVNAIEVVN
Sbjct: 1084 SVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVN 1143

Query: 1779 AFPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNVEGVSEFD 1600
            AFPEEDGL KFREWIESPDP ILGKFDVQTGASSRK R  +G+ DVN+AKN+V GVSEFD
Sbjct: 1144 AFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRKRRSSDGDKDVNYAKNSVGGVSEFD 1203

Query: 1599 ESISQFDEDKQSADYSQNM-KIFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVDKSTEP 1423
            ESISQFDEDKQSA+YSQNM KIFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVDKSTE 
Sbjct: 1204 ESISQFDEDKQSAEYSQNMKKIFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVDKSTES 1263

Query: 1422 FSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNERFAKIR 1243
            FSWGKPDLFVLRKFCWDKFGWG DKSNELLVPVLKEYEKRETQLRLEAFY+FNERFAKIR
Sbjct: 1264 FSWGKPDLFVLRKFCWDKFGWGGDKSNELLVPVLKEYEKRETQLRLEAFYTFNERFAKIR 1323

Query: 1242 SNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKESVAGA 1063
            S RIKKAVKGITG+QSL   DDAGQEVSKSRKKR+NNGLENGNN+SQKA K+A+ESV+GA
Sbjct: 1324 SKRIKKAVKGITGSQSLLLMDDAGQEVSKSRKKRKNNGLENGNNRSQKAPKKAEESVSGA 1383

Query: 1062 PSNMEKSTPRQSRKRKVLKKFVSSEMENSERLALADSGAN----XXXXXXXXXXXXXXXX 895
             +NMEKS+  QSR+RKVL+KFV +EMEN ERL  A  G N                    
Sbjct: 1384 QNNMEKSSQSQSRERKVLEKFVLAEMENPERLTPAGGGRNANNVFRGNRRGKGQRVGRGR 1443

Query: 894  XXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNYCVNDPEIDDVG 715
                LCAE+SET          +QEYY+E+ E QQEV+RSTRSRKPV+Y V+DPEI DVG
Sbjct: 1444 GRRRLCAEQSETSSSDDIGSDDTQEYYSEKFEGQQEVRRSTRSRKPVDYNVDDPEIADVG 1503

Query: 714  KIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDKDYIERGGGFCIDDGE 535
            KI+S +E SN+E A+QD VHGV   ASAD SR KQHRA DPSIDKDYIERGGGFCIDD E
Sbjct: 1504 KILSNKESSNEEEAKQDSVHGVTGEASADYSRKKQHRADDPSIDKDYIERGGGFCIDDRE 1563

Query: 534  IAQPTMSPSDDPFFEAETSKDYMKMGGGFCEDESETCEDQVAAQDSVISGENPSTCLDSL 355
            I +P++SP DDPF EAE +KDYMKMGGGFC DESET EDQVAA+D V++GE+PSTCLDS 
Sbjct: 1564 IGRPSVSPCDDPFLEAEITKDYMKMGGGFCHDESETREDQVAAKDPVVTGESPSTCLDSS 1623

Query: 354  DGVDCDAGLGDSTL--GSKEAIKGSEN-NRTDTFDTELNLVHQNATSTDNVKNDADGASG 184
            DGV CD GLGDST    SKEA  G EN  RTDTFDTE N V QNATSTD+ +NDA  AS 
Sbjct: 1624 DGVHCDVGLGDSTTSSNSKEATNGLENVGRTDTFDTEPNPVVQNATSTDSARNDAGRASR 1683

Query: 183  GVLTAMTFLRRKRRRS 136
            G LTAMTFLRRKRRRS
Sbjct: 1684 GSLTAMTFLRRKRRRS 1699


>XP_006446452.1 hypothetical protein CICLE_v10014025mg [Citrus clementina] ESR59692.1
            hypothetical protein CICLE_v10014025mg [Citrus
            clementina]
          Length = 1699

 Score = 1241 bits (3211), Expect = 0.0
 Identities = 655/856 (76%), Positives = 710/856 (82%), Gaps = 9/856 (1%)
 Frame = -3

Query: 2676 GTIMDLKGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKND 2497
            GT M+L  VQLVKG+ L AS KGD HLT DK CS+DRS+S D VF DSS AIL + KKN+
Sbjct: 844  GTTMELTEVQLVKGRCLSASAKGDEHLTRDKMCSDDRSHSVDAVFEDSSIAILDEDKKNN 903

Query: 2496 CEAEISVLVSDKKIEIEAEMKHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKL 2317
            CEAE SVL  DKK EIE EMKH+F AEP C T+GTSD SIP+ ++SG ASIY+T IE+K 
Sbjct: 904  CEAETSVLPGDKKNEIEVEMKHDFTAEPSCRTVGTSDTSIPLVKTSGNASIYDTDIEQKS 963

Query: 2316 DAEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKILEE-MLILDEECMNLGDEQKKLER 2140
              E+T DT LKD KQ TG +A K  ENV AEATEKILEE M ILD E M LGDEQKKLER
Sbjct: 964  AEERTPDTYLKDSKQNTGIFATKAIENVHAEATEKILEEEMQILDHEYMYLGDEQKKLER 1023

Query: 2139 NAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGAR 1960
            NAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGAR
Sbjct: 1024 NAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGAR 1083

Query: 1959 SVYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVN 1780
            SVYKNIFDDRKYVETYFMQDIEK+LGLTREKLIR+ALLLGSDYTEGISGIGIVNAIEVVN
Sbjct: 1084 SVYKNIFDDRKYVETYFMQDIEKDLGLTREKLIRMALLLGSDYTEGISGIGIVNAIEVVN 1143

Query: 1779 AFPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNVEGVSEFD 1600
            AFPEEDGL KFREWIESPDP ILGKFDVQTGASSRK R  +G+ DVN+AK++VEGVSEFD
Sbjct: 1144 AFPEEDGLSKFREWIESPDPTILGKFDVQTGASSRKRRSSDGDKDVNYAKHSVEGVSEFD 1203

Query: 1599 ESISQFDEDKQSADYSQNM-KIFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVDKSTEP 1423
            ESISQFDEDKQSA+YSQNM KIFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVDKSTE 
Sbjct: 1204 ESISQFDEDKQSAEYSQNMKKIFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVDKSTES 1263

Query: 1422 FSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNERFAKIR 1243
            FSWGKPDLFVLRKFCW+KFGWG DKSNELLVPVLKEYEKRETQLRLEAFY+FNERFAKIR
Sbjct: 1264 FSWGKPDLFVLRKFCWEKFGWGGDKSNELLVPVLKEYEKRETQLRLEAFYTFNERFAKIR 1323

Query: 1242 SNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKESVAGA 1063
            S RIKKAVKGITGNQSL   DDAGQEVSKSR KR+NNGLENG+N+SQKA K+ +ESV+GA
Sbjct: 1324 SKRIKKAVKGITGNQSLLLMDDAGQEVSKSRNKRKNNGLENGSNRSQKAPKKGEESVSGA 1383

Query: 1062 PSNMEKSTPRQSRKRKVLKKFVSSEMENSERLALADSGAN----XXXXXXXXXXXXXXXX 895
             +NMEKS+  QSRKRKVL+KFV +EMEN ERL  A  G N                    
Sbjct: 1384 QNNMEKSSQSQSRKRKVLEKFVLAEMENPERLTPAGGGRNANNVFRGNRRGKGQRVGRGR 1443

Query: 894  XXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNYCVNDPEIDDVG 715
              G LCAE+SET          +QEYY+E+ E QQEV+RSTRSRKPV+Y V+DPEI DVG
Sbjct: 1444 GRGRLCAEQSETSSSDDIGSDDTQEYYSEKFEGQQEVRRSTRSRKPVDYNVDDPEIADVG 1503

Query: 714  KIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDKDYIERGGGFCIDDGE 535
            KI+S +E SN+E A+QD VHGV   ASAD SR KQHRA DPSIDKDYIERGGGFCIDD E
Sbjct: 1504 KILSNKESSNEEEAKQDSVHGVTGEASADYSRKKQHRADDPSIDKDYIERGGGFCIDDQE 1563

Query: 534  IAQPTMSPSDDPFFEAETSKDYMKMGGGFCEDESETCEDQVAAQDSVISGENPSTCLDSL 355
            I QP++SP DDPF EAE +KDYMKMGGGFC DESET EDQVAA+D V++GE+PSTC DS 
Sbjct: 1564 IGQPSVSPCDDPFLEAEITKDYMKMGGGFCHDESETREDQVAAKDPVVTGESPSTCFDSS 1623

Query: 354  DGVDCDAGLGDSTL--GSKEAIKGSEN-NRTDTFDTELNLVHQNATSTDNVKNDADGASG 184
            DGV CD GLGDST    SKEA  G EN  RTDTFDTE N V QNATSTD+ +NDA  AS 
Sbjct: 1624 DGVHCDVGLGDSTTSSNSKEATNGLENVGRTDTFDTEPNPVVQNATSTDSARNDAGRASR 1683

Query: 183  GVLTAMTFLRRKRRRS 136
            G LTAMTFLRRKRRRS
Sbjct: 1684 GSLTAMTFLRRKRRRS 1699


>EOY02333.1 DNA-repair protein UVH3, putative isoform 1 [Theobroma cacao]
          Length = 1670

 Score =  804 bits (2076), Expect = 0.0
 Identities = 475/876 (54%), Positives = 585/876 (66%), Gaps = 38/876 (4%)
 Frame = -3

Query: 2652 VQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEISVL 2473
            V L  G++  AS++ DG  T     S+D S S DVV  D   AILVD KKND E E S L
Sbjct: 815  VHLAPGKQSNASNEVDGLSTVSNSWSKDSSRSLDVVLDDLPGAILVD-KKNDSEGEPSTL 873

Query: 2472 VSDKKIEIEAEM-------KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
            VS+KK E+E E+       K++  A+ L  +I   D SIP+ +SS   +  +  IE++L 
Sbjct: 874  VSEKKSEVETELCSMVEDKKNDLEAKSLHQSIEIVDSSIPVVQSSVNKATSDIHIEQELV 933

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             ++T++  + + +Q T    +K N+    E T+  L EE+LIL +ECMNLGDEQ+KLERN
Sbjct: 934  GDRTYENYVNEAEQETDMANVKGNDYADVEFTQVSLDEELLILGQECMNLGDEQRKLERN 993

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL N+VDGVVTDDSDVFLFGARS
Sbjct: 994  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNIVDGVVTDDSDVFLFGARS 1053

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            VYKNIFDDRKYVETYFMQDIEKE+GLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 1054 VYKNIFDDRKYVETYFMQDIEKEIGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 1113

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNN-------VE 1618
            FPEEDGL KFREWIESPDPAILGK +VQ G+S+RK   +  + DV  AK +       +E
Sbjct: 1114 FPEEDGLHKFREWIESPDPAILGKLNVQEGSSARKRGSKFSDKDVISAKTSMRDSGSPIE 1173

Query: 1617 GVSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQV 1441
            G+S FD++ISQ D++ QS D   ++K IFMDKHRNVSKNWHIPSSFPSEAVIS Y  PQV
Sbjct: 1174 GLSSFDQNISQADKNTQSTDCIDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISEYCSPQV 1233

Query: 1440 DKSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNE 1261
            DKSTEPF+WG+PDLFVLRK CWDKFGWGS KS++LL+PVL+EYEKRETQLRLEAFY+FNE
Sbjct: 1234 DKSTEPFTWGRPDLFVLRKLCWDKFGWGSQKSDDLLLPVLREYEKRETQLRLEAFYTFNE 1293

Query: 1260 RFAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAK 1081
            RFAKIRS RIKKAVKGITGNQS E  DDA Q+VSKSRK+RR + +++G+++S + S   +
Sbjct: 1294 RFAKIRSKRIKKAVKGITGNQSSELIDDAMQQVSKSRKRRRVSPVKSGDDKSGEPSNWKE 1353

Query: 1080 ESVAGAPS-NMEKSTPRQSRKRKVLKKFVSSEMENSERLA-LADSGANXXXXXXXXXXXX 907
            + V+   S +MEKS P+ SRKR        S  E   R A    +               
Sbjct: 1354 DIVSQRQSKSMEKSVPKPSRKRPPQTSPGKSTPEQPPRAARRRKTNKQSPGIGRRKGHGA 1413

Query: 906  XXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNYCVNDPEI 727
                       E+SET           QE   E+L+  Q+V+RS R+R PVNY VND E 
Sbjct: 1414 RRRRRKASPDFEQSETSSSGGNSGNDYQEVDGEKLDRPQQVRRSMRTRNPVNYNVNDLE- 1472

Query: 726  DDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSID----KDYIERGG 559
            D+VG  +S +E S +E  EQ+        A+ D +      A DP+ +    +DY+ERGG
Sbjct: 1473 DEVG--LSNKESSCEEAMEQE--------AADDLNEENPSEARDPTFEEDFSRDYLERGG 1522

Query: 558  GFCIDDGEIAQPTMSPSDDPFFEAETSKDYMKMGGGFCEDESETCEDQVAAQDSVISGEN 379
            GFC+D+ E+  P  S   DP  EAE SKDY+KMGGGFC DE+ET +D  AA D     ++
Sbjct: 1523 GFCMDEKEVGHPDESQGVDPTPEAEASKDYLKMGGGFCIDENETSKDPDAACD-----QD 1577

Query: 378  PSTCLDSLDGV------DCDAGLGDSTLGSKEAIKGSENNRTDTFDTELNLVHQNATSTD 217
            P    DS +GV      D +A   + +   K ++ G +N       TELNL HQNA + D
Sbjct: 1578 PVAATDSSNGVAFTDKADDNAASAEPSSSPKRSLDGLQN----ASFTELNLGHQNAANED 1633

Query: 216  NVK----------NDADGASGGVLTAMTFLRRKRRR 139
            + K          ND   A  G L+AM  L+RKRR+
Sbjct: 1634 DSKGSAPPQETTVNDTVTAFVGGLSAMPTLKRKRRK 1669


>XP_007031407.2 PREDICTED: DNA repair protein UVH3 [Theobroma cacao]
          Length = 1670

 Score =  800 bits (2065), Expect = 0.0
 Identities = 472/876 (53%), Positives = 583/876 (66%), Gaps = 38/876 (4%)
 Frame = -3

Query: 2652 VQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEISVL 2473
            V L  G++  AS++ DG  T     S+D S S DVV  D   AILVD KKND E E S L
Sbjct: 815  VHLAPGKQSNASNEVDGLSTVSNSWSKDSSRSLDVVLDDLPGAILVD-KKNDSEGEPSTL 873

Query: 2472 VSDKKIEIEAEM-------KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
            VS+KK E+E E+       K++  A+ L  +I   D SIP+ +SS   +  +  IE++L 
Sbjct: 874  VSEKKSEVETELCSMVEDKKNDLEAKSLHQSIEIVDSSIPVVQSSVNKATSDIHIEQELV 933

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             ++T++  + +  Q T    +K N+    E T+  L EE+LIL +ECMNLGDEQ+KLERN
Sbjct: 934  GDRTYENYVNEADQETDMSNVKGNDYADVEFTQVSLDEELLILGQECMNLGDEQRKLERN 993

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL N+VDGVVTDDSDVFLFGARS
Sbjct: 994  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNIVDGVVTDDSDVFLFGARS 1053

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            VYKNIFDDRKYVETYFMQDIEKE+GLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEV+NA
Sbjct: 1054 VYKNIFDDRKYVETYFMQDIEKEIGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVLNA 1113

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNN-------VE 1618
            FPEEDGL KFREWIESPDPAILGK +VQ G+S+RK   +  + DV  AK +       +E
Sbjct: 1114 FPEEDGLHKFREWIESPDPAILGKLNVQEGSSARKRCSKFSDKDVISAKTSMRDSGSPIE 1173

Query: 1617 GVSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQV 1441
            G+S FD++ISQ D++ QS D   ++K IFMDKHRNVSKNWHIPSSFPSEAVIS Y  PQV
Sbjct: 1174 GLSSFDQNISQADKNTQSTDCIDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISEYCSPQV 1233

Query: 1440 DKSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNE 1261
            DKSTEPF+WG+PDLFVLRK CWDKFGWGS KS++LL+PVL+EYEKRETQLRLEAFY+FNE
Sbjct: 1234 DKSTEPFTWGRPDLFVLRKLCWDKFGWGSQKSDDLLLPVLREYEKRETQLRLEAFYTFNE 1293

Query: 1260 RFAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAK 1081
            RFAKIRS RIKKAVKGITGNQS E  DDA Q+VSKSRK+RR + +++G+++S + S   +
Sbjct: 1294 RFAKIRSKRIKKAVKGITGNQSSELIDDAMQQVSKSRKRRRVSPVKSGDDKSGEPSNWKE 1353

Query: 1080 ESVAGAPS-NMEKSTPRQSRKRKVLKKFVSSEMENSERLA-LADSGANXXXXXXXXXXXX 907
            + V+   S +MEKS P+ SRKR        S  E   + A    +               
Sbjct: 1354 DIVSQRQSKSMEKSVPKPSRKRPPQTSPGKSTPEQPPQAARRRKTNKQSPGIGRRIGHGA 1413

Query: 906  XXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNYCVNDPEI 727
                       E+SET           QE   E+L+  Q+V+RS R+R PVNY VND E 
Sbjct: 1414 GRRRRKASPDFEQSETSSSGGNSGNDYQEVDGEKLDRPQQVRRSMRTRNPVNYNVNDLE- 1472

Query: 726  DDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSID----KDYIERGG 559
            D+VG  +S +E S +E  EQ+        A+ D +        DP+ +    +DY+ERGG
Sbjct: 1473 DEVG--LSNKESSCEEAMEQE--------AADDLNEENPSEVRDPTFEEDFSRDYLERGG 1522

Query: 558  GFCIDDGEIAQPTMSPSDDPFFEAETSKDYMKMGGGFCEDESETCEDQVAAQDSVISGEN 379
            GFC+D+ E+  P  S   DP  EAE SKDY+KMGGGFC DE+ET +D  AA D     ++
Sbjct: 1523 GFCMDEKEVGHPDESQGVDPTPEAEASKDYLKMGGGFCIDENETSKDPDAACD-----QD 1577

Query: 378  PSTCLDSLDGV------DCDAGLGDSTLGSKEAIKGSENNRTDTFDTELNLVHQNATSTD 217
            P    DS +GV      D +A   + +   K ++ G +N       TELNL HQNA + D
Sbjct: 1578 PVAATDSSNGVAFTDKADDNAASAEPSSSPKRSLDGLQNASI----TELNLGHQNAANKD 1633

Query: 216  NVK----------NDADGASGGVLTAMTFLRRKRRR 139
            + K          ND   A  G L+AM  L+RKRR+
Sbjct: 1634 DSKGSAPPQETTVNDTGTAFVGGLSAMPTLKRKRRK 1669


>XP_012444069.1 PREDICTED: DNA repair protein UVH3 isoform X6 [Gossypium raimondii]
          Length = 1401

 Score =  741 bits (1913), Expect = 0.0
 Identities = 450/910 (49%), Positives = 565/910 (62%), Gaps = 70/910 (7%)
 Frame = -3

Query: 2658 KGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEIS 2479
            K V    G+ L  S + DG  T      +D S+S D   GD    I VD KK   E E S
Sbjct: 509  KEVDFPTGKHLDVSKEVDGLSTISDSWFKDNSHSFDAAHGDIPDTIQVD-KKTGSEDEPS 567

Query: 2478 VLVSDKKIEIEAEM-----KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
             LVSD K  IEAE+     K +F A+P   ++ T + SIP  +SS    I +  IE++L 
Sbjct: 568  NLVSDNKSSIEAEILDQDKKIDFEAKPSQQSVDTVNLSIPTVQSSANKVISDLHIEQELS 627

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             + T++  +   +Q+T    IK N+N   + ++  L EE+LILD+EC+N+ DEQ+KLERN
Sbjct: 628  GDITYENCVNKAEQHTDMSTIKGNDNEEIKFSKASLDEELLILDQECINMVDEQRKLERN 687

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL NLVDGVVTDDSDVFLFGARS
Sbjct: 688  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARS 747

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            VYKNIFDDRKYVETYFMQDIEKELGLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 748  VYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 807

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNV------EG 1615
            FPEEDGL KFREWIESPDP ILGK +VQ G+S+RK  P++   DVN  K +        G
Sbjct: 808  FPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNGTKTSTRGSESNNG 867

Query: 1614 VSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVD 1438
             S  D++  Q D++ QS D + ++K IFMDKHRNVSKNWHIPSSFPSEAVISAY  PQVD
Sbjct: 868  TSSLDQNSFQADKNMQSTDCTDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISAYSLPQVD 927

Query: 1437 KSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNER 1258
            KSTEPF+WG+PDLFVLRK CW+KFGWGS KS+ELL+PVL+E EKRETQLR+EAFY+FNER
Sbjct: 928  KSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPVLRESEKRETQLRMEAFYTFNER 987

Query: 1257 FAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKE 1078
            FAKIRS RIKKAVKGITGNQS E  DD  Q+VSKSR+KRR + +++G+++S + S + KE
Sbjct: 988  FAKIRSKRIKKAVKGITGNQSSELIDDGMQQVSKSRRKRRASPVQSGDDKSGEPSNK-KE 1046

Query: 1077 SVAG--APSNMEKSTPRQSRKRKVLKKFVSSEMENSE--------RLALADSGANXXXXX 928
             +A      + +KS P+ SRKR+   K VS EM   E        R     S  N     
Sbjct: 1047 DIASRCQSKSTDKSVPKTSRKRQSSGKDVSFEMRTPEPQLQTLRRRETNKQSAGNGRGRG 1106

Query: 927  XXXXXXXXXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNY 748
                              ++ ET          +QE   E+L+  +EV+RS  +R PVNY
Sbjct: 1107 GGEGRRRKGSSGF-----QQFETSSSGGDSGNVNQEVDGEKLDQPREVRRSMHTRNPVNY 1161

Query: 747  CVNDPEIDDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDK---D 577
             V D E D+ G  +S +E S ++  E++        A  D     Q  A +PS+D    D
Sbjct: 1162 TVKDLE-DEGG--LSHKESSGEDAMEKE--------AGEDVKEKIQCEAREPSLDNIYGD 1210

Query: 576  YIERGGGFCID--------------------------------DGEIAQPTMSPSDDPFF 493
            Y+E GGGFC+D                                +G+I QP  S   +PF 
Sbjct: 1211 YLETGGGFCMDERGTDLPDANQDVDLETEPTNDYLKMGGGFYMEGDIDQPDTSQDVNPFS 1270

Query: 492  EAETSKDYMKMGGGFCEDESETCEDQVAAQ-DSVISGENPSTCLDSLDGVDCDAGLGDST 316
            E  ++ DY+KMGGGFC +ESET  +  A   +  +     S C   +D  D +    + +
Sbjct: 1271 ETGSANDYLKMGGGFCMEESETIGNPDAGNYEDPVQATESSNCFAFMDKADDNIDSAEPS 1330

Query: 315  LGSKEAIKGSENN---RTDTFDTELNLVHQNATSTDNVKNDA---DGASGGV-----LTA 169
            + ++ ++     N     D  +  LNL H+NA + D+ K  A   + +  G      L+A
Sbjct: 1331 VNAEGSLLDKLQNGGKTPDEANDALNLNHRNAANKDDSKESASLPEASDVGTTFISGLSA 1390

Query: 168  MTFLRRKRRR 139
            M  L+RKRRR
Sbjct: 1391 MPSLKRKRRR 1400


>XP_016749883.1 PREDICTED: DNA repair protein UVH3-like isoform X4 [Gossypium
            hirsutum]
          Length = 1401

 Score =  741 bits (1912), Expect = 0.0
 Identities = 450/910 (49%), Positives = 566/910 (62%), Gaps = 70/910 (7%)
 Frame = -3

Query: 2658 KGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEIS 2479
            K V    G+ L  S + DG  T      +D S+S D   GD    I VD KK   E E S
Sbjct: 509  KEVDFPTGKHLDVSKEVDGLSTISDSWFKDNSHSFDAARGDIPDTIQVD-KKTGSEDEPS 567

Query: 2478 VLVSDKKIEIEAEM-----KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
             LVSD K  IEAE+     K +F A+P   ++ T + SIP  +SS    I +  IE++L 
Sbjct: 568  NLVSDNKSSIEAEILDQDKKIDFEAKPSQQSVDTVNLSIPTVQSSANKVISDLHIEQELS 627

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             + T++  +   +Q+T    IK N+N   + ++  L EE+LILD+EC+N+ DEQ+KLERN
Sbjct: 628  GDITYENCVDKAEQHTDMSTIKGNDNEEIKFSKASLDEELLILDQECINMVDEQRKLERN 687

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL NLVDGVVTDDSDVFLFGARS
Sbjct: 688  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARS 747

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            +YKNIFDDRKYVETYFMQDIEKELGLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 748  IYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 807

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAK------NNVEG 1615
            F EEDGL KFREWIESPDP ILGK +VQ G+S+RK  P++   DVN  K       +  G
Sbjct: 808  FSEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNGTKTSRRGSESNNG 867

Query: 1614 VSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVD 1438
             S  D++  Q D++ QS D + ++K IFMDKHRNVSKNWHIPSSFPSEAVISAY  PQVD
Sbjct: 868  TSSLDQNSFQADKNMQSTDCTDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISAYSLPQVD 927

Query: 1437 KSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNER 1258
            KSTEPF+WG+PDLFVLRK CW+KFGWGS KS+ELL+PVL+EYEKRETQLR+EAFY+FNER
Sbjct: 928  KSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPVLREYEKRETQLRMEAFYTFNER 987

Query: 1257 FAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKE 1078
            FAKIRS RIKKAVKGITGNQS E  D+  Q+VSKSR+KRR + +++G+++S + S + KE
Sbjct: 988  FAKIRSKRIKKAVKGITGNQSSELIDEGMQQVSKSRRKRRASPVQSGDDKSGEPSNK-KE 1046

Query: 1077 SVAG--APSNMEKSTPRQSRKRKVLKKFVSSEMENSE--------RLALADSGANXXXXX 928
             +A      + +KS P+ SRKR+   K VS EM   E        R     S  N     
Sbjct: 1047 DIASRCQSKSTDKSVPKTSRKRQNSGKDVSFEMRTPEPQLQTLRGRKTNKQSAGNGRGRG 1106

Query: 927  XXXXXXXXXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNY 748
                              ++ ET          +QE   E+L+  +EV+RS R+R PVNY
Sbjct: 1107 GGEGRRRKGSSGF-----QQFETSSSGGDSGNDNQEVDGEKLDQPREVRRSMRTRNPVNY 1161

Query: 747  CVNDPEIDDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDK---D 577
             V D E D+ G  +S +E S ++  E++        A  D     Q  A +PS+D    D
Sbjct: 1162 TVKDLE-DEGG--LSHKESSGEDAMEKE--------AGEDVKEKIQCEAREPSLDNIYGD 1210

Query: 576  YIERGGGFCID--------------------------------DGEIAQPTMSPSDDPFF 493
            Y+E GGGFC+D                                +G+I QP  S   +PF 
Sbjct: 1211 YLETGGGFCMDERGTDLPDANQDVDLETEPTNDYLKMGGGFCMEGDIDQPDTSQDVNPFS 1270

Query: 492  EAETSKDYMKMGGGFCEDESETCEDQVAAQ-DSVISGENPSTCLDSLDGVDCDAGLGDST 316
            E  ++ DY+KMGGGFC +ESET  +  A   +  +     S C   +D  D +    + +
Sbjct: 1271 ETGSANDYLKMGGGFCMEESETIGNPDAGNYEDPVQATESSNCFAFMDKADDNIDSAEPS 1330

Query: 315  LGSKEAIKGSENN---RTDTFDTELNLVHQNATSTDNVKNDA---DGASGGV-----LTA 169
            + +K ++     N     D  +  LNL H+NA + D+ K  A   + +  G      L+A
Sbjct: 1331 VNAKGSLLDKLQNGGKTPDEANDALNLNHRNAANKDDSKESASLREASDVGTTFISGLSA 1390

Query: 168  MTFLRRKRRR 139
            M  L+RKRRR
Sbjct: 1391 MPSLKRKRRR 1400


>XP_012444060.1 PREDICTED: DNA repair protein UVH3 isoform X5 [Gossypium raimondii]
          Length = 1440

 Score =  741 bits (1913), Expect = 0.0
 Identities = 450/910 (49%), Positives = 565/910 (62%), Gaps = 70/910 (7%)
 Frame = -3

Query: 2658 KGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEIS 2479
            K V    G+ L  S + DG  T      +D S+S D   GD    I VD KK   E E S
Sbjct: 548  KEVDFPTGKHLDVSKEVDGLSTISDSWFKDNSHSFDAAHGDIPDTIQVD-KKTGSEDEPS 606

Query: 2478 VLVSDKKIEIEAEM-----KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
             LVSD K  IEAE+     K +F A+P   ++ T + SIP  +SS    I +  IE++L 
Sbjct: 607  NLVSDNKSSIEAEILDQDKKIDFEAKPSQQSVDTVNLSIPTVQSSANKVISDLHIEQELS 666

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             + T++  +   +Q+T    IK N+N   + ++  L EE+LILD+EC+N+ DEQ+KLERN
Sbjct: 667  GDITYENCVNKAEQHTDMSTIKGNDNEEIKFSKASLDEELLILDQECINMVDEQRKLERN 726

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL NLVDGVVTDDSDVFLFGARS
Sbjct: 727  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARS 786

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            VYKNIFDDRKYVETYFMQDIEKELGLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 787  VYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 846

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNV------EG 1615
            FPEEDGL KFREWIESPDP ILGK +VQ G+S+RK  P++   DVN  K +        G
Sbjct: 847  FPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNGTKTSTRGSESNNG 906

Query: 1614 VSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVD 1438
             S  D++  Q D++ QS D + ++K IFMDKHRNVSKNWHIPSSFPSEAVISAY  PQVD
Sbjct: 907  TSSLDQNSFQADKNMQSTDCTDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISAYSLPQVD 966

Query: 1437 KSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNER 1258
            KSTEPF+WG+PDLFVLRK CW+KFGWGS KS+ELL+PVL+E EKRETQLR+EAFY+FNER
Sbjct: 967  KSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPVLRESEKRETQLRMEAFYTFNER 1026

Query: 1257 FAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKE 1078
            FAKIRS RIKKAVKGITGNQS E  DD  Q+VSKSR+KRR + +++G+++S + S + KE
Sbjct: 1027 FAKIRSKRIKKAVKGITGNQSSELIDDGMQQVSKSRRKRRASPVQSGDDKSGEPSNK-KE 1085

Query: 1077 SVAG--APSNMEKSTPRQSRKRKVLKKFVSSEMENSE--------RLALADSGANXXXXX 928
             +A      + +KS P+ SRKR+   K VS EM   E        R     S  N     
Sbjct: 1086 DIASRCQSKSTDKSVPKTSRKRQSSGKDVSFEMRTPEPQLQTLRRRETNKQSAGNGRGRG 1145

Query: 927  XXXXXXXXXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNY 748
                              ++ ET          +QE   E+L+  +EV+RS  +R PVNY
Sbjct: 1146 GGEGRRRKGSSGF-----QQFETSSSGGDSGNVNQEVDGEKLDQPREVRRSMHTRNPVNY 1200

Query: 747  CVNDPEIDDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDK---D 577
             V D E D+ G  +S +E S ++  E++        A  D     Q  A +PS+D    D
Sbjct: 1201 TVKDLE-DEGG--LSHKESSGEDAMEKE--------AGEDVKEKIQCEAREPSLDNIYGD 1249

Query: 576  YIERGGGFCID--------------------------------DGEIAQPTMSPSDDPFF 493
            Y+E GGGFC+D                                +G+I QP  S   +PF 
Sbjct: 1250 YLETGGGFCMDERGTDLPDANQDVDLETEPTNDYLKMGGGFYMEGDIDQPDTSQDVNPFS 1309

Query: 492  EAETSKDYMKMGGGFCEDESETCEDQVAAQ-DSVISGENPSTCLDSLDGVDCDAGLGDST 316
            E  ++ DY+KMGGGFC +ESET  +  A   +  +     S C   +D  D +    + +
Sbjct: 1310 ETGSANDYLKMGGGFCMEESETIGNPDAGNYEDPVQATESSNCFAFMDKADDNIDSAEPS 1369

Query: 315  LGSKEAIKGSENN---RTDTFDTELNLVHQNATSTDNVKNDA---DGASGGV-----LTA 169
            + ++ ++     N     D  +  LNL H+NA + D+ K  A   + +  G      L+A
Sbjct: 1370 VNAEGSLLDKLQNGGKTPDEANDALNLNHRNAANKDDSKESASLPEASDVGTTFISGLSA 1429

Query: 168  MTFLRRKRRR 139
            M  L+RKRRR
Sbjct: 1430 MPSLKRKRRR 1439


>XP_016749882.1 PREDICTED: DNA repair protein UVH3-like isoform X3 [Gossypium
            hirsutum]
          Length = 1440

 Score =  741 bits (1912), Expect = 0.0
 Identities = 450/910 (49%), Positives = 566/910 (62%), Gaps = 70/910 (7%)
 Frame = -3

Query: 2658 KGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEIS 2479
            K V    G+ L  S + DG  T      +D S+S D   GD    I VD KK   E E S
Sbjct: 548  KEVDFPTGKHLDVSKEVDGLSTISDSWFKDNSHSFDAARGDIPDTIQVD-KKTGSEDEPS 606

Query: 2478 VLVSDKKIEIEAEM-----KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
             LVSD K  IEAE+     K +F A+P   ++ T + SIP  +SS    I +  IE++L 
Sbjct: 607  NLVSDNKSSIEAEILDQDKKIDFEAKPSQQSVDTVNLSIPTVQSSANKVISDLHIEQELS 666

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             + T++  +   +Q+T    IK N+N   + ++  L EE+LILD+EC+N+ DEQ+KLERN
Sbjct: 667  GDITYENCVDKAEQHTDMSTIKGNDNEEIKFSKASLDEELLILDQECINMVDEQRKLERN 726

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL NLVDGVVTDDSDVFLFGARS
Sbjct: 727  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARS 786

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            +YKNIFDDRKYVETYFMQDIEKELGLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 787  IYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 846

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAK------NNVEG 1615
            F EEDGL KFREWIESPDP ILGK +VQ G+S+RK  P++   DVN  K       +  G
Sbjct: 847  FSEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNGTKTSRRGSESNNG 906

Query: 1614 VSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVD 1438
             S  D++  Q D++ QS D + ++K IFMDKHRNVSKNWHIPSSFPSEAVISAY  PQVD
Sbjct: 907  TSSLDQNSFQADKNMQSTDCTDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISAYSLPQVD 966

Query: 1437 KSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNER 1258
            KSTEPF+WG+PDLFVLRK CW+KFGWGS KS+ELL+PVL+EYEKRETQLR+EAFY+FNER
Sbjct: 967  KSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPVLREYEKRETQLRMEAFYTFNER 1026

Query: 1257 FAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKE 1078
            FAKIRS RIKKAVKGITGNQS E  D+  Q+VSKSR+KRR + +++G+++S + S + KE
Sbjct: 1027 FAKIRSKRIKKAVKGITGNQSSELIDEGMQQVSKSRRKRRASPVQSGDDKSGEPSNK-KE 1085

Query: 1077 SVAG--APSNMEKSTPRQSRKRKVLKKFVSSEMENSE--------RLALADSGANXXXXX 928
             +A      + +KS P+ SRKR+   K VS EM   E        R     S  N     
Sbjct: 1086 DIASRCQSKSTDKSVPKTSRKRQNSGKDVSFEMRTPEPQLQTLRGRKTNKQSAGNGRGRG 1145

Query: 927  XXXXXXXXXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNY 748
                              ++ ET          +QE   E+L+  +EV+RS R+R PVNY
Sbjct: 1146 GGEGRRRKGSSGF-----QQFETSSSGGDSGNDNQEVDGEKLDQPREVRRSMRTRNPVNY 1200

Query: 747  CVNDPEIDDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDK---D 577
             V D E D+ G  +S +E S ++  E++        A  D     Q  A +PS+D    D
Sbjct: 1201 TVKDLE-DEGG--LSHKESSGEDAMEKE--------AGEDVKEKIQCEAREPSLDNIYGD 1249

Query: 576  YIERGGGFCID--------------------------------DGEIAQPTMSPSDDPFF 493
            Y+E GGGFC+D                                +G+I QP  S   +PF 
Sbjct: 1250 YLETGGGFCMDERGTDLPDANQDVDLETEPTNDYLKMGGGFCMEGDIDQPDTSQDVNPFS 1309

Query: 492  EAETSKDYMKMGGGFCEDESETCEDQVAAQ-DSVISGENPSTCLDSLDGVDCDAGLGDST 316
            E  ++ DY+KMGGGFC +ESET  +  A   +  +     S C   +D  D +    + +
Sbjct: 1310 ETGSANDYLKMGGGFCMEESETIGNPDAGNYEDPVQATESSNCFAFMDKADDNIDSAEPS 1369

Query: 315  LGSKEAIKGSENN---RTDTFDTELNLVHQNATSTDNVKNDA---DGASGGV-----LTA 169
            + +K ++     N     D  +  LNL H+NA + D+ K  A   + +  G      L+A
Sbjct: 1370 VNAKGSLLDKLQNGGKTPDEANDALNLNHRNAANKDDSKESASLREASDVGTTFISGLSA 1429

Query: 168  MTFLRRKRRR 139
            M  L+RKRRR
Sbjct: 1430 MPSLKRKRRR 1439


>XP_012444053.1 PREDICTED: DNA repair protein UVH3 isoform X4 [Gossypium raimondii]
          Length = 1591

 Score =  741 bits (1913), Expect = 0.0
 Identities = 450/910 (49%), Positives = 565/910 (62%), Gaps = 70/910 (7%)
 Frame = -3

Query: 2658 KGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEIS 2479
            K V    G+ L  S + DG  T      +D S+S D   GD    I VD KK   E E S
Sbjct: 699  KEVDFPTGKHLDVSKEVDGLSTISDSWFKDNSHSFDAAHGDIPDTIQVD-KKTGSEDEPS 757

Query: 2478 VLVSDKKIEIEAEM-----KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
             LVSD K  IEAE+     K +F A+P   ++ T + SIP  +SS    I +  IE++L 
Sbjct: 758  NLVSDNKSSIEAEILDQDKKIDFEAKPSQQSVDTVNLSIPTVQSSANKVISDLHIEQELS 817

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             + T++  +   +Q+T    IK N+N   + ++  L EE+LILD+EC+N+ DEQ+KLERN
Sbjct: 818  GDITYENCVNKAEQHTDMSTIKGNDNEEIKFSKASLDEELLILDQECINMVDEQRKLERN 877

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL NLVDGVVTDDSDVFLFGARS
Sbjct: 878  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARS 937

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            VYKNIFDDRKYVETYFMQDIEKELGLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 938  VYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 997

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNV------EG 1615
            FPEEDGL KFREWIESPDP ILGK +VQ G+S+RK  P++   DVN  K +        G
Sbjct: 998  FPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNGTKTSTRGSESNNG 1057

Query: 1614 VSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVD 1438
             S  D++  Q D++ QS D + ++K IFMDKHRNVSKNWHIPSSFPSEAVISAY  PQVD
Sbjct: 1058 TSSLDQNSFQADKNMQSTDCTDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISAYSLPQVD 1117

Query: 1437 KSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNER 1258
            KSTEPF+WG+PDLFVLRK CW+KFGWGS KS+ELL+PVL+E EKRETQLR+EAFY+FNER
Sbjct: 1118 KSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPVLRESEKRETQLRMEAFYTFNER 1177

Query: 1257 FAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKE 1078
            FAKIRS RIKKAVKGITGNQS E  DD  Q+VSKSR+KRR + +++G+++S + S + KE
Sbjct: 1178 FAKIRSKRIKKAVKGITGNQSSELIDDGMQQVSKSRRKRRASPVQSGDDKSGEPSNK-KE 1236

Query: 1077 SVAG--APSNMEKSTPRQSRKRKVLKKFVSSEMENSE--------RLALADSGANXXXXX 928
             +A      + +KS P+ SRKR+   K VS EM   E        R     S  N     
Sbjct: 1237 DIASRCQSKSTDKSVPKTSRKRQSSGKDVSFEMRTPEPQLQTLRRRETNKQSAGNGRGRG 1296

Query: 927  XXXXXXXXXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNY 748
                              ++ ET          +QE   E+L+  +EV+RS  +R PVNY
Sbjct: 1297 GGEGRRRKGSSGF-----QQFETSSSGGDSGNVNQEVDGEKLDQPREVRRSMHTRNPVNY 1351

Query: 747  CVNDPEIDDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDK---D 577
             V D E D+ G  +S +E S ++  E++        A  D     Q  A +PS+D    D
Sbjct: 1352 TVKDLE-DEGG--LSHKESSGEDAMEKE--------AGEDVKEKIQCEAREPSLDNIYGD 1400

Query: 576  YIERGGGFCID--------------------------------DGEIAQPTMSPSDDPFF 493
            Y+E GGGFC+D                                +G+I QP  S   +PF 
Sbjct: 1401 YLETGGGFCMDERGTDLPDANQDVDLETEPTNDYLKMGGGFYMEGDIDQPDTSQDVNPFS 1460

Query: 492  EAETSKDYMKMGGGFCEDESETCEDQVAAQ-DSVISGENPSTCLDSLDGVDCDAGLGDST 316
            E  ++ DY+KMGGGFC +ESET  +  A   +  +     S C   +D  D +    + +
Sbjct: 1461 ETGSANDYLKMGGGFCMEESETIGNPDAGNYEDPVQATESSNCFAFMDKADDNIDSAEPS 1520

Query: 315  LGSKEAIKGSENN---RTDTFDTELNLVHQNATSTDNVKNDA---DGASGGV-----LTA 169
            + ++ ++     N     D  +  LNL H+NA + D+ K  A   + +  G      L+A
Sbjct: 1521 VNAEGSLLDKLQNGGKTPDEANDALNLNHRNAANKDDSKESASLPEASDVGTTFISGLSA 1580

Query: 168  MTFLRRKRRR 139
            M  L+RKRRR
Sbjct: 1581 MPSLKRKRRR 1590


>KJB11471.1 hypothetical protein B456_001G260400 [Gossypium raimondii]
          Length = 1635

 Score =  742 bits (1915), Expect = 0.0
 Identities = 446/878 (50%), Positives = 559/878 (63%), Gaps = 38/878 (4%)
 Frame = -3

Query: 2658 KGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEIS 2479
            K V    G+ L  S + DG  T      +D S+S D   GD    I VD KK   E E S
Sbjct: 777  KEVDFPTGKHLDVSKEVDGLSTISDSWFKDNSHSFDAAHGDIPDTIQVD-KKTGSEDEPS 835

Query: 2478 VLVSDKKIEIEAEM-----KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
             LVSD K  IEAE+     K +F A+P   ++ T + SIP  +SS    I +  IE++L 
Sbjct: 836  NLVSDNKSSIEAEILDQDKKIDFEAKPSQQSVDTVNLSIPTVQSSANKVISDLHIEQELS 895

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             + T++  +   +Q+T    IK N+N   + ++  L EE+LILD+EC+N+ DEQ+KLERN
Sbjct: 896  GDITYENCVNKAEQHTDMSTIKGNDNEEIKFSKASLDEELLILDQECINMVDEQRKLERN 955

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL NLVDGVVTDDSDVFLFGARS
Sbjct: 956  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARS 1015

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            VYKNIFDDRKYVETYFMQDIEKELGLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 1016 VYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 1075

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNV------EG 1615
            FPEEDGL KFREWIESPDP ILGK +VQ G+S+RK  P++   DVN  K +        G
Sbjct: 1076 FPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNGTKTSTRGSESNNG 1135

Query: 1614 VSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVD 1438
             S  D++  Q D++ QS D + ++K IFMDKHRNVSKNWHIPSSFPSEAVISAY  PQVD
Sbjct: 1136 TSSLDQNSFQADKNMQSTDCTDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISAYSLPQVD 1195

Query: 1437 KSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNER 1258
            KSTEPF+WG+PDLFVLRK CW+KFGWGS KS+ELL+PVL+E EKRETQLR+EAFY+FNER
Sbjct: 1196 KSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPVLRESEKRETQLRMEAFYTFNER 1255

Query: 1257 FAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKE 1078
            FAKIRS RIKKAVKGITGNQS E  DD  Q+VSKSR+KRR + +++G+++S + S + KE
Sbjct: 1256 FAKIRSKRIKKAVKGITGNQSSELIDDGMQQVSKSRRKRRASPVQSGDDKSGEPSNK-KE 1314

Query: 1077 SVAG--APSNMEKSTPRQSRKRKVLKKFVSSEMENSE--------RLALADSGANXXXXX 928
             +A      + +KS P+ SRKR+   K VS EM   E        R     S  N     
Sbjct: 1315 DIASRCQSKSTDKSVPKTSRKRQSSGKDVSFEMRTPEPQLQTLRRRETNKQSAGNGRGRG 1374

Query: 927  XXXXXXXXXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNY 748
                              ++ ET          +QE   E+L+  +EV+RS  +R PVNY
Sbjct: 1375 GGEGRRRKGSSGF-----QQFETSSSGGDSGNVNQEVDGEKLDQPREVRRSMHTRNPVNY 1429

Query: 747  CVNDPEIDDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDK---D 577
             V D E D+ G  +S +E S ++  E++        A  D     Q  A +PS+D    D
Sbjct: 1430 TVKDLE-DEGG--LSHKESSGEDAMEKE--------AGEDVKEKIQCEAREPSLDNIYGD 1478

Query: 576  YIERGGGFCIDDGEIAQPTMSPSDDPFFEAETSKDYMKMGGGFCEDESETCEDQVAAQ-D 400
            Y+E GGGFC+D+     P    + D   E E + DY+KMGGGFC +ESET  +  A   +
Sbjct: 1479 YLETGGGFCMDERGTDLP--DANQDVDLETEPTNDYLKMGGGFCMEESETIGNPDAGNYE 1536

Query: 399  SVISGENPSTCLDSLDGVDCDAGLGDSTLGSKEAIKGSENN---RTDTFDTELNLVHQNA 229
              +     S C   +D  D +    + ++ ++ ++     N     D  +  LNL H+NA
Sbjct: 1537 DPVQATESSNCFAFMDKADDNIDSAEPSVNAEGSLLDKLQNGGKTPDEANDALNLNHRNA 1596

Query: 228  TSTDNVKNDA---DGASGGV-----LTAMTFLRRKRRR 139
             + D+ K  A   + +  G      L+AM  L+RKRRR
Sbjct: 1597 ANKDDSKESASLPEASDVGTTFISGLSAMPSLKRKRRR 1634


>KJB11467.1 hypothetical protein B456_001G260400 [Gossypium raimondii]
          Length = 1666

 Score =  741 bits (1913), Expect = 0.0
 Identities = 450/910 (49%), Positives = 565/910 (62%), Gaps = 70/910 (7%)
 Frame = -3

Query: 2658 KGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEIS 2479
            K V    G+ L  S + DG  T      +D S+S D   GD    I VD KK   E E S
Sbjct: 774  KEVDFPTGKHLDVSKEVDGLSTISDSWFKDNSHSFDAAHGDIPDTIQVD-KKTGSEDEPS 832

Query: 2478 VLVSDKKIEIEAEM-----KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
             LVSD K  IEAE+     K +F A+P   ++ T + SIP  +SS    I +  IE++L 
Sbjct: 833  NLVSDNKSSIEAEILDQDKKIDFEAKPSQQSVDTVNLSIPTVQSSANKVISDLHIEQELS 892

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             + T++  +   +Q+T    IK N+N   + ++  L EE+LILD+EC+N+ DEQ+KLERN
Sbjct: 893  GDITYENCVNKAEQHTDMSTIKGNDNEEIKFSKASLDEELLILDQECINMVDEQRKLERN 952

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL NLVDGVVTDDSDVFLFGARS
Sbjct: 953  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARS 1012

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            VYKNIFDDRKYVETYFMQDIEKELGLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 1013 VYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 1072

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNV------EG 1615
            FPEEDGL KFREWIESPDP ILGK +VQ G+S+RK  P++   DVN  K +        G
Sbjct: 1073 FPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNGTKTSTRGSESNNG 1132

Query: 1614 VSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVD 1438
             S  D++  Q D++ QS D + ++K IFMDKHRNVSKNWHIPSSFPSEAVISAY  PQVD
Sbjct: 1133 TSSLDQNSFQADKNMQSTDCTDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISAYSLPQVD 1192

Query: 1437 KSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNER 1258
            KSTEPF+WG+PDLFVLRK CW+KFGWGS KS+ELL+PVL+E EKRETQLR+EAFY+FNER
Sbjct: 1193 KSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPVLRESEKRETQLRMEAFYTFNER 1252

Query: 1257 FAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKE 1078
            FAKIRS RIKKAVKGITGNQS E  DD  Q+VSKSR+KRR + +++G+++S + S + KE
Sbjct: 1253 FAKIRSKRIKKAVKGITGNQSSELIDDGMQQVSKSRRKRRASPVQSGDDKSGEPSNK-KE 1311

Query: 1077 SVAG--APSNMEKSTPRQSRKRKVLKKFVSSEMENSE--------RLALADSGANXXXXX 928
             +A      + +KS P+ SRKR+   K VS EM   E        R     S  N     
Sbjct: 1312 DIASRCQSKSTDKSVPKTSRKRQSSGKDVSFEMRTPEPQLQTLRRRETNKQSAGNGRGRG 1371

Query: 927  XXXXXXXXXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNY 748
                              ++ ET          +QE   E+L+  +EV+RS  +R PVNY
Sbjct: 1372 GGEGRRRKGSSGF-----QQFETSSSGGDSGNVNQEVDGEKLDQPREVRRSMHTRNPVNY 1426

Query: 747  CVNDPEIDDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDK---D 577
             V D E D+ G  +S +E S ++  E++        A  D     Q  A +PS+D    D
Sbjct: 1427 TVKDLE-DEGG--LSHKESSGEDAMEKE--------AGEDVKEKIQCEAREPSLDNIYGD 1475

Query: 576  YIERGGGFCID--------------------------------DGEIAQPTMSPSDDPFF 493
            Y+E GGGFC+D                                +G+I QP  S   +PF 
Sbjct: 1476 YLETGGGFCMDERGTDLPDANQDVDLETEPTNDYLKMGGGFYMEGDIDQPDTSQDVNPFS 1535

Query: 492  EAETSKDYMKMGGGFCEDESETCEDQVAAQ-DSVISGENPSTCLDSLDGVDCDAGLGDST 316
            E  ++ DY+KMGGGFC +ESET  +  A   +  +     S C   +D  D +    + +
Sbjct: 1536 ETGSANDYLKMGGGFCMEESETIGNPDAGNYEDPVQATESSNCFAFMDKADDNIDSAEPS 1595

Query: 315  LGSKEAIKGSENN---RTDTFDTELNLVHQNATSTDNVKNDA---DGASGGV-----LTA 169
            + ++ ++     N     D  +  LNL H+NA + D+ K  A   + +  G      L+A
Sbjct: 1596 VNAEGSLLDKLQNGGKTPDEANDALNLNHRNAANKDDSKESASLPEASDVGTTFISGLSA 1655

Query: 168  MTFLRRKRRR 139
            M  L+RKRRR
Sbjct: 1656 MPSLKRKRRR 1665


>KJB11465.1 hypothetical protein B456_001G260400 [Gossypium raimondii]
          Length = 1667

 Score =  741 bits (1913), Expect = 0.0
 Identities = 450/910 (49%), Positives = 565/910 (62%), Gaps = 70/910 (7%)
 Frame = -3

Query: 2658 KGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEIS 2479
            K V    G+ L  S + DG  T      +D S+S D   GD    I VD KK   E E S
Sbjct: 775  KEVDFPTGKHLDVSKEVDGLSTISDSWFKDNSHSFDAAHGDIPDTIQVD-KKTGSEDEPS 833

Query: 2478 VLVSDKKIEIEAEM-----KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
             LVSD K  IEAE+     K +F A+P   ++ T + SIP  +SS    I +  IE++L 
Sbjct: 834  NLVSDNKSSIEAEILDQDKKIDFEAKPSQQSVDTVNLSIPTVQSSANKVISDLHIEQELS 893

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             + T++  +   +Q+T    IK N+N   + ++  L EE+LILD+EC+N+ DEQ+KLERN
Sbjct: 894  GDITYENCVNKAEQHTDMSTIKGNDNEEIKFSKASLDEELLILDQECINMVDEQRKLERN 953

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL NLVDGVVTDDSDVFLFGARS
Sbjct: 954  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARS 1013

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            VYKNIFDDRKYVETYFMQDIEKELGLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 1014 VYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 1073

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNV------EG 1615
            FPEEDGL KFREWIESPDP ILGK +VQ G+S+RK  P++   DVN  K +        G
Sbjct: 1074 FPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNGTKTSTRGSESNNG 1133

Query: 1614 VSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVD 1438
             S  D++  Q D++ QS D + ++K IFMDKHRNVSKNWHIPSSFPSEAVISAY  PQVD
Sbjct: 1134 TSSLDQNSFQADKNMQSTDCTDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISAYSLPQVD 1193

Query: 1437 KSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNER 1258
            KSTEPF+WG+PDLFVLRK CW+KFGWGS KS+ELL+PVL+E EKRETQLR+EAFY+FNER
Sbjct: 1194 KSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPVLRESEKRETQLRMEAFYTFNER 1253

Query: 1257 FAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKE 1078
            FAKIRS RIKKAVKGITGNQS E  DD  Q+VSKSR+KRR + +++G+++S + S + KE
Sbjct: 1254 FAKIRSKRIKKAVKGITGNQSSELIDDGMQQVSKSRRKRRASPVQSGDDKSGEPSNK-KE 1312

Query: 1077 SVAG--APSNMEKSTPRQSRKRKVLKKFVSSEMENSE--------RLALADSGANXXXXX 928
             +A      + +KS P+ SRKR+   K VS EM   E        R     S  N     
Sbjct: 1313 DIASRCQSKSTDKSVPKTSRKRQSSGKDVSFEMRTPEPQLQTLRRRETNKQSAGNGRGRG 1372

Query: 927  XXXXXXXXXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNY 748
                              ++ ET          +QE   E+L+  +EV+RS  +R PVNY
Sbjct: 1373 GGEGRRRKGSSGF-----QQFETSSSGGDSGNVNQEVDGEKLDQPREVRRSMHTRNPVNY 1427

Query: 747  CVNDPEIDDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDK---D 577
             V D E D+ G  +S +E S ++  E++        A  D     Q  A +PS+D    D
Sbjct: 1428 TVKDLE-DEGG--LSHKESSGEDAMEKE--------AGEDVKEKIQCEAREPSLDNIYGD 1476

Query: 576  YIERGGGFCID--------------------------------DGEIAQPTMSPSDDPFF 493
            Y+E GGGFC+D                                +G+I QP  S   +PF 
Sbjct: 1477 YLETGGGFCMDERGTDLPDANQDVDLETEPTNDYLKMGGGFYMEGDIDQPDTSQDVNPFS 1536

Query: 492  EAETSKDYMKMGGGFCEDESETCEDQVAAQ-DSVISGENPSTCLDSLDGVDCDAGLGDST 316
            E  ++ DY+KMGGGFC +ESET  +  A   +  +     S C   +D  D +    + +
Sbjct: 1537 ETGSANDYLKMGGGFCMEESETIGNPDAGNYEDPVQATESSNCFAFMDKADDNIDSAEPS 1596

Query: 315  LGSKEAIKGSENN---RTDTFDTELNLVHQNATSTDNVKNDA---DGASGGV-----LTA 169
            + ++ ++     N     D  +  LNL H+NA + D+ K  A   + +  G      L+A
Sbjct: 1597 VNAEGSLLDKLQNGGKTPDEANDALNLNHRNAANKDDSKESASLPEASDVGTTFISGLSA 1656

Query: 168  MTFLRRKRRR 139
            M  L+RKRRR
Sbjct: 1657 MPSLKRKRRR 1666


>KJB11466.1 hypothetical protein B456_001G260400 [Gossypium raimondii]
          Length = 1669

 Score =  741 bits (1913), Expect = 0.0
 Identities = 450/910 (49%), Positives = 565/910 (62%), Gaps = 70/910 (7%)
 Frame = -3

Query: 2658 KGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEIS 2479
            K V    G+ L  S + DG  T      +D S+S D   GD    I VD KK   E E S
Sbjct: 777  KEVDFPTGKHLDVSKEVDGLSTISDSWFKDNSHSFDAAHGDIPDTIQVD-KKTGSEDEPS 835

Query: 2478 VLVSDKKIEIEAEM-----KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
             LVSD K  IEAE+     K +F A+P   ++ T + SIP  +SS    I +  IE++L 
Sbjct: 836  NLVSDNKSSIEAEILDQDKKIDFEAKPSQQSVDTVNLSIPTVQSSANKVISDLHIEQELS 895

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             + T++  +   +Q+T    IK N+N   + ++  L EE+LILD+EC+N+ DEQ+KLERN
Sbjct: 896  GDITYENCVNKAEQHTDMSTIKGNDNEEIKFSKASLDEELLILDQECINMVDEQRKLERN 955

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL NLVDGVVTDDSDVFLFGARS
Sbjct: 956  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARS 1015

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            VYKNIFDDRKYVETYFMQDIEKELGLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 1016 VYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 1075

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNV------EG 1615
            FPEEDGL KFREWIESPDP ILGK +VQ G+S+RK  P++   DVN  K +        G
Sbjct: 1076 FPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNGTKTSTRGSESNNG 1135

Query: 1614 VSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVD 1438
             S  D++  Q D++ QS D + ++K IFMDKHRNVSKNWHIPSSFPSEAVISAY  PQVD
Sbjct: 1136 TSSLDQNSFQADKNMQSTDCTDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISAYSLPQVD 1195

Query: 1437 KSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNER 1258
            KSTEPF+WG+PDLFVLRK CW+KFGWGS KS+ELL+PVL+E EKRETQLR+EAFY+FNER
Sbjct: 1196 KSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPVLRESEKRETQLRMEAFYTFNER 1255

Query: 1257 FAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKE 1078
            FAKIRS RIKKAVKGITGNQS E  DD  Q+VSKSR+KRR + +++G+++S + S + KE
Sbjct: 1256 FAKIRSKRIKKAVKGITGNQSSELIDDGMQQVSKSRRKRRASPVQSGDDKSGEPSNK-KE 1314

Query: 1077 SVAG--APSNMEKSTPRQSRKRKVLKKFVSSEMENSE--------RLALADSGANXXXXX 928
             +A      + +KS P+ SRKR+   K VS EM   E        R     S  N     
Sbjct: 1315 DIASRCQSKSTDKSVPKTSRKRQSSGKDVSFEMRTPEPQLQTLRRRETNKQSAGNGRGRG 1374

Query: 927  XXXXXXXXXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNY 748
                              ++ ET          +QE   E+L+  +EV+RS  +R PVNY
Sbjct: 1375 GGEGRRRKGSSGF-----QQFETSSSGGDSGNVNQEVDGEKLDQPREVRRSMHTRNPVNY 1429

Query: 747  CVNDPEIDDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDK---D 577
             V D E D+ G  +S +E S ++  E++        A  D     Q  A +PS+D    D
Sbjct: 1430 TVKDLE-DEGG--LSHKESSGEDAMEKE--------AGEDVKEKIQCEAREPSLDNIYGD 1478

Query: 576  YIERGGGFCID--------------------------------DGEIAQPTMSPSDDPFF 493
            Y+E GGGFC+D                                +G+I QP  S   +PF 
Sbjct: 1479 YLETGGGFCMDERGTDLPDANQDVDLETEPTNDYLKMGGGFYMEGDIDQPDTSQDVNPFS 1538

Query: 492  EAETSKDYMKMGGGFCEDESETCEDQVAAQ-DSVISGENPSTCLDSLDGVDCDAGLGDST 316
            E  ++ DY+KMGGGFC +ESET  +  A   +  +     S C   +D  D +    + +
Sbjct: 1539 ETGSANDYLKMGGGFCMEESETIGNPDAGNYEDPVQATESSNCFAFMDKADDNIDSAEPS 1598

Query: 315  LGSKEAIKGSENN---RTDTFDTELNLVHQNATSTDNVKNDA---DGASGGV-----LTA 169
            + ++ ++     N     D  +  LNL H+NA + D+ K  A   + +  G      L+A
Sbjct: 1599 VNAEGSLLDKLQNGGKTPDEANDALNLNHRNAANKDDSKESASLPEASDVGTTFISGLSA 1658

Query: 168  MTFLRRKRRR 139
            M  L+RKRRR
Sbjct: 1659 MPSLKRKRRR 1668


>KJB11470.1 hypothetical protein B456_001G260400 [Gossypium raimondii]
          Length = 1696

 Score =  741 bits (1913), Expect = 0.0
 Identities = 450/910 (49%), Positives = 565/910 (62%), Gaps = 70/910 (7%)
 Frame = -3

Query: 2658 KGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEIS 2479
            K V    G+ L  S + DG  T      +D S+S D   GD    I VD KK   E E S
Sbjct: 804  KEVDFPTGKHLDVSKEVDGLSTISDSWFKDNSHSFDAAHGDIPDTIQVD-KKTGSEDEPS 862

Query: 2478 VLVSDKKIEIEAEM-----KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
             LVSD K  IEAE+     K +F A+P   ++ T + SIP  +SS    I +  IE++L 
Sbjct: 863  NLVSDNKSSIEAEILDQDKKIDFEAKPSQQSVDTVNLSIPTVQSSANKVISDLHIEQELS 922

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             + T++  +   +Q+T    IK N+N   + ++  L EE+LILD+EC+N+ DEQ+KLERN
Sbjct: 923  GDITYENCVNKAEQHTDMSTIKGNDNEEIKFSKASLDEELLILDQECINMVDEQRKLERN 982

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL NLVDGVVTDDSDVFLFGARS
Sbjct: 983  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARS 1042

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            VYKNIFDDRKYVETYFMQDIEKELGLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 1043 VYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 1102

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNV------EG 1615
            FPEEDGL KFREWIESPDP ILGK +VQ G+S+RK  P++   DVN  K +        G
Sbjct: 1103 FPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNGTKTSTRGSESNNG 1162

Query: 1614 VSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVD 1438
             S  D++  Q D++ QS D + ++K IFMDKHRNVSKNWHIPSSFPSEAVISAY  PQVD
Sbjct: 1163 TSSLDQNSFQADKNMQSTDCTDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISAYSLPQVD 1222

Query: 1437 KSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNER 1258
            KSTEPF+WG+PDLFVLRK CW+KFGWGS KS+ELL+PVL+E EKRETQLR+EAFY+FNER
Sbjct: 1223 KSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPVLRESEKRETQLRMEAFYTFNER 1282

Query: 1257 FAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKE 1078
            FAKIRS RIKKAVKGITGNQS E  DD  Q+VSKSR+KRR + +++G+++S + S + KE
Sbjct: 1283 FAKIRSKRIKKAVKGITGNQSSELIDDGMQQVSKSRRKRRASPVQSGDDKSGEPSNK-KE 1341

Query: 1077 SVAG--APSNMEKSTPRQSRKRKVLKKFVSSEMENSE--------RLALADSGANXXXXX 928
             +A      + +KS P+ SRKR+   K VS EM   E        R     S  N     
Sbjct: 1342 DIASRCQSKSTDKSVPKTSRKRQSSGKDVSFEMRTPEPQLQTLRRRETNKQSAGNGRGRG 1401

Query: 927  XXXXXXXXXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNY 748
                              ++ ET          +QE   E+L+  +EV+RS  +R PVNY
Sbjct: 1402 GGEGRRRKGSSGF-----QQFETSSSGGDSGNVNQEVDGEKLDQPREVRRSMHTRNPVNY 1456

Query: 747  CVNDPEIDDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDK---D 577
             V D E D+ G  +S +E S ++  E++        A  D     Q  A +PS+D    D
Sbjct: 1457 TVKDLE-DEGG--LSHKESSGEDAMEKE--------AGEDVKEKIQCEAREPSLDNIYGD 1505

Query: 576  YIERGGGFCID--------------------------------DGEIAQPTMSPSDDPFF 493
            Y+E GGGFC+D                                +G+I QP  S   +PF 
Sbjct: 1506 YLETGGGFCMDERGTDLPDANQDVDLETEPTNDYLKMGGGFYMEGDIDQPDTSQDVNPFS 1565

Query: 492  EAETSKDYMKMGGGFCEDESETCEDQVAAQ-DSVISGENPSTCLDSLDGVDCDAGLGDST 316
            E  ++ DY+KMGGGFC +ESET  +  A   +  +     S C   +D  D +    + +
Sbjct: 1566 ETGSANDYLKMGGGFCMEESETIGNPDAGNYEDPVQATESSNCFAFMDKADDNIDSAEPS 1625

Query: 315  LGSKEAIKGSENN---RTDTFDTELNLVHQNATSTDNVKNDA---DGASGGV-----LTA 169
            + ++ ++     N     D  +  LNL H+NA + D+ K  A   + +  G      L+A
Sbjct: 1626 VNAEGSLLDKLQNGGKTPDEANDALNLNHRNAANKDDSKESASLPEASDVGTTFISGLSA 1685

Query: 168  MTFLRRKRRR 139
            M  L+RKRRR
Sbjct: 1686 MPSLKRKRRR 1695


>KJB11469.1 hypothetical protein B456_001G260400 [Gossypium raimondii]
          Length = 1700

 Score =  741 bits (1913), Expect = 0.0
 Identities = 450/910 (49%), Positives = 565/910 (62%), Gaps = 70/910 (7%)
 Frame = -3

Query: 2658 KGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEIS 2479
            K V    G+ L  S + DG  T      +D S+S D   GD    I VD KK   E E S
Sbjct: 808  KEVDFPTGKHLDVSKEVDGLSTISDSWFKDNSHSFDAAHGDIPDTIQVD-KKTGSEDEPS 866

Query: 2478 VLVSDKKIEIEAEM-----KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
             LVSD K  IEAE+     K +F A+P   ++ T + SIP  +SS    I +  IE++L 
Sbjct: 867  NLVSDNKSSIEAEILDQDKKIDFEAKPSQQSVDTVNLSIPTVQSSANKVISDLHIEQELS 926

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             + T++  +   +Q+T    IK N+N   + ++  L EE+LILD+EC+N+ DEQ+KLERN
Sbjct: 927  GDITYENCVNKAEQHTDMSTIKGNDNEEIKFSKASLDEELLILDQECINMVDEQRKLERN 986

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL NLVDGVVTDDSDVFLFGARS
Sbjct: 987  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARS 1046

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            VYKNIFDDRKYVETYFMQDIEKELGLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 1047 VYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 1106

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNV------EG 1615
            FPEEDGL KFREWIESPDP ILGK +VQ G+S+RK  P++   DVN  K +        G
Sbjct: 1107 FPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNGTKTSTRGSESNNG 1166

Query: 1614 VSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVD 1438
             S  D++  Q D++ QS D + ++K IFMDKHRNVSKNWHIPSSFPSEAVISAY  PQVD
Sbjct: 1167 TSSLDQNSFQADKNMQSTDCTDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISAYSLPQVD 1226

Query: 1437 KSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNER 1258
            KSTEPF+WG+PDLFVLRK CW+KFGWGS KS+ELL+PVL+E EKRETQLR+EAFY+FNER
Sbjct: 1227 KSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPVLRESEKRETQLRMEAFYTFNER 1286

Query: 1257 FAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKE 1078
            FAKIRS RIKKAVKGITGNQS E  DD  Q+VSKSR+KRR + +++G+++S + S + KE
Sbjct: 1287 FAKIRSKRIKKAVKGITGNQSSELIDDGMQQVSKSRRKRRASPVQSGDDKSGEPSNK-KE 1345

Query: 1077 SVAG--APSNMEKSTPRQSRKRKVLKKFVSSEMENSE--------RLALADSGANXXXXX 928
             +A      + +KS P+ SRKR+   K VS EM   E        R     S  N     
Sbjct: 1346 DIASRCQSKSTDKSVPKTSRKRQSSGKDVSFEMRTPEPQLQTLRRRETNKQSAGNGRGRG 1405

Query: 927  XXXXXXXXXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNY 748
                              ++ ET          +QE   E+L+  +EV+RS  +R PVNY
Sbjct: 1406 GGEGRRRKGSSGF-----QQFETSSSGGDSGNVNQEVDGEKLDQPREVRRSMHTRNPVNY 1460

Query: 747  CVNDPEIDDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDK---D 577
             V D E D+ G  +S +E S ++  E++        A  D     Q  A +PS+D    D
Sbjct: 1461 TVKDLE-DEGG--LSHKESSGEDAMEKE--------AGEDVKEKIQCEAREPSLDNIYGD 1509

Query: 576  YIERGGGFCID--------------------------------DGEIAQPTMSPSDDPFF 493
            Y+E GGGFC+D                                +G+I QP  S   +PF 
Sbjct: 1510 YLETGGGFCMDERGTDLPDANQDVDLETEPTNDYLKMGGGFYMEGDIDQPDTSQDVNPFS 1569

Query: 492  EAETSKDYMKMGGGFCEDESETCEDQVAAQ-DSVISGENPSTCLDSLDGVDCDAGLGDST 316
            E  ++ DY+KMGGGFC +ESET  +  A   +  +     S C   +D  D +    + +
Sbjct: 1570 ETGSANDYLKMGGGFCMEESETIGNPDAGNYEDPVQATESSNCFAFMDKADDNIDSAEPS 1629

Query: 315  LGSKEAIKGSENN---RTDTFDTELNLVHQNATSTDNVKNDA---DGASGGV-----LTA 169
            + ++ ++     N     D  +  LNL H+NA + D+ K  A   + +  G      L+A
Sbjct: 1630 VNAEGSLLDKLQNGGKTPDEANDALNLNHRNAANKDDSKESASLPEASDVGTTFISGLSA 1689

Query: 168  MTFLRRKRRR 139
            M  L+RKRRR
Sbjct: 1690 MPSLKRKRRR 1699


>XP_012444044.1 PREDICTED: DNA repair protein UVH3 isoform X3 [Gossypium raimondii]
          Length = 1706

 Score =  741 bits (1913), Expect = 0.0
 Identities = 450/910 (49%), Positives = 565/910 (62%), Gaps = 70/910 (7%)
 Frame = -3

Query: 2658 KGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEIS 2479
            K V    G+ L  S + DG  T      +D S+S D   GD    I VD KK   E E S
Sbjct: 814  KEVDFPTGKHLDVSKEVDGLSTISDSWFKDNSHSFDAAHGDIPDTIQVD-KKTGSEDEPS 872

Query: 2478 VLVSDKKIEIEAEM-----KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
             LVSD K  IEAE+     K +F A+P   ++ T + SIP  +SS    I +  IE++L 
Sbjct: 873  NLVSDNKSSIEAEILDQDKKIDFEAKPSQQSVDTVNLSIPTVQSSANKVISDLHIEQELS 932

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             + T++  +   +Q+T    IK N+N   + ++  L EE+LILD+EC+N+ DEQ+KLERN
Sbjct: 933  GDITYENCVNKAEQHTDMSTIKGNDNEEIKFSKASLDEELLILDQECINMVDEQRKLERN 992

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL NLVDGVVTDDSDVFLFGARS
Sbjct: 993  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARS 1052

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            VYKNIFDDRKYVETYFMQDIEKELGLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 1053 VYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 1112

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNV------EG 1615
            FPEEDGL KFREWIESPDP ILGK +VQ G+S+RK  P++   DVN  K +        G
Sbjct: 1113 FPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNGTKTSTRGSESNNG 1172

Query: 1614 VSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVD 1438
             S  D++  Q D++ QS D + ++K IFMDKHRNVSKNWHIPSSFPSEAVISAY  PQVD
Sbjct: 1173 TSSLDQNSFQADKNMQSTDCTDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISAYSLPQVD 1232

Query: 1437 KSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNER 1258
            KSTEPF+WG+PDLFVLRK CW+KFGWGS KS+ELL+PVL+E EKRETQLR+EAFY+FNER
Sbjct: 1233 KSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPVLRESEKRETQLRMEAFYTFNER 1292

Query: 1257 FAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKE 1078
            FAKIRS RIKKAVKGITGNQS E  DD  Q+VSKSR+KRR + +++G+++S + S + KE
Sbjct: 1293 FAKIRSKRIKKAVKGITGNQSSELIDDGMQQVSKSRRKRRASPVQSGDDKSGEPSNK-KE 1351

Query: 1077 SVAG--APSNMEKSTPRQSRKRKVLKKFVSSEMENSE--------RLALADSGANXXXXX 928
             +A      + +KS P+ SRKR+   K VS EM   E        R     S  N     
Sbjct: 1352 DIASRCQSKSTDKSVPKTSRKRQSSGKDVSFEMRTPEPQLQTLRRRETNKQSAGNGRGRG 1411

Query: 927  XXXXXXXXXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNY 748
                              ++ ET          +QE   E+L+  +EV+RS  +R PVNY
Sbjct: 1412 GGEGRRRKGSSGF-----QQFETSSSGGDSGNVNQEVDGEKLDQPREVRRSMHTRNPVNY 1466

Query: 747  CVNDPEIDDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDK---D 577
             V D E D+ G  +S +E S ++  E++        A  D     Q  A +PS+D    D
Sbjct: 1467 TVKDLE-DEGG--LSHKESSGEDAMEKE--------AGEDVKEKIQCEAREPSLDNIYGD 1515

Query: 576  YIERGGGFCID--------------------------------DGEIAQPTMSPSDDPFF 493
            Y+E GGGFC+D                                +G+I QP  S   +PF 
Sbjct: 1516 YLETGGGFCMDERGTDLPDANQDVDLETEPTNDYLKMGGGFYMEGDIDQPDTSQDVNPFS 1575

Query: 492  EAETSKDYMKMGGGFCEDESETCEDQVAAQ-DSVISGENPSTCLDSLDGVDCDAGLGDST 316
            E  ++ DY+KMGGGFC +ESET  +  A   +  +     S C   +D  D +    + +
Sbjct: 1576 ETGSANDYLKMGGGFCMEESETIGNPDAGNYEDPVQATESSNCFAFMDKADDNIDSAEPS 1635

Query: 315  LGSKEAIKGSENN---RTDTFDTELNLVHQNATSTDNVKNDA---DGASGGV-----LTA 169
            + ++ ++     N     D  +  LNL H+NA + D+ K  A   + +  G      L+A
Sbjct: 1636 VNAEGSLLDKLQNGGKTPDEANDALNLNHRNAANKDDSKESASLPEASDVGTTFISGLSA 1695

Query: 168  MTFLRRKRRR 139
            M  L+RKRRR
Sbjct: 1696 MPSLKRKRRR 1705


>XP_012444035.1 PREDICTED: DNA repair protein UVH3 isoform X2 [Gossypium raimondii]
          Length = 1707

 Score =  741 bits (1913), Expect = 0.0
 Identities = 450/910 (49%), Positives = 565/910 (62%), Gaps = 70/910 (7%)
 Frame = -3

Query: 2658 KGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEIS 2479
            K V    G+ L  S + DG  T      +D S+S D   GD    I VD KK   E E S
Sbjct: 815  KEVDFPTGKHLDVSKEVDGLSTISDSWFKDNSHSFDAAHGDIPDTIQVD-KKTGSEDEPS 873

Query: 2478 VLVSDKKIEIEAEM-----KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
             LVSD K  IEAE+     K +F A+P   ++ T + SIP  +SS    I +  IE++L 
Sbjct: 874  NLVSDNKSSIEAEILDQDKKIDFEAKPSQQSVDTVNLSIPTVQSSANKVISDLHIEQELS 933

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             + T++  +   +Q+T    IK N+N   + ++  L EE+LILD+EC+N+ DEQ+KLERN
Sbjct: 934  GDITYENCVNKAEQHTDMSTIKGNDNEEIKFSKASLDEELLILDQECINMVDEQRKLERN 993

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL NLVDGVVTDDSDVFLFGARS
Sbjct: 994  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARS 1053

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            VYKNIFDDRKYVETYFMQDIEKELGLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 1054 VYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 1113

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNV------EG 1615
            FPEEDGL KFREWIESPDP ILGK +VQ G+S+RK  P++   DVN  K +        G
Sbjct: 1114 FPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNGTKTSTRGSESNNG 1173

Query: 1614 VSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVD 1438
             S  D++  Q D++ QS D + ++K IFMDKHRNVSKNWHIPSSFPSEAVISAY  PQVD
Sbjct: 1174 TSSLDQNSFQADKNMQSTDCTDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISAYSLPQVD 1233

Query: 1437 KSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNER 1258
            KSTEPF+WG+PDLFVLRK CW+KFGWGS KS+ELL+PVL+E EKRETQLR+EAFY+FNER
Sbjct: 1234 KSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPVLRESEKRETQLRMEAFYTFNER 1293

Query: 1257 FAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKE 1078
            FAKIRS RIKKAVKGITGNQS E  DD  Q+VSKSR+KRR + +++G+++S + S + KE
Sbjct: 1294 FAKIRSKRIKKAVKGITGNQSSELIDDGMQQVSKSRRKRRASPVQSGDDKSGEPSNK-KE 1352

Query: 1077 SVAG--APSNMEKSTPRQSRKRKVLKKFVSSEMENSE--------RLALADSGANXXXXX 928
             +A      + +KS P+ SRKR+   K VS EM   E        R     S  N     
Sbjct: 1353 DIASRCQSKSTDKSVPKTSRKRQSSGKDVSFEMRTPEPQLQTLRRRETNKQSAGNGRGRG 1412

Query: 927  XXXXXXXXXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNY 748
                              ++ ET          +QE   E+L+  +EV+RS  +R PVNY
Sbjct: 1413 GGEGRRRKGSSGF-----QQFETSSSGGDSGNVNQEVDGEKLDQPREVRRSMHTRNPVNY 1467

Query: 747  CVNDPEIDDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDK---D 577
             V D E D+ G  +S +E S ++  E++        A  D     Q  A +PS+D    D
Sbjct: 1468 TVKDLE-DEGG--LSHKESSGEDAMEKE--------AGEDVKEKIQCEAREPSLDNIYGD 1516

Query: 576  YIERGGGFCID--------------------------------DGEIAQPTMSPSDDPFF 493
            Y+E GGGFC+D                                +G+I QP  S   +PF 
Sbjct: 1517 YLETGGGFCMDERGTDLPDANQDVDLETEPTNDYLKMGGGFYMEGDIDQPDTSQDVNPFS 1576

Query: 492  EAETSKDYMKMGGGFCEDESETCEDQVAAQ-DSVISGENPSTCLDSLDGVDCDAGLGDST 316
            E  ++ DY+KMGGGFC +ESET  +  A   +  +     S C   +D  D +    + +
Sbjct: 1577 ETGSANDYLKMGGGFCMEESETIGNPDAGNYEDPVQATESSNCFAFMDKADDNIDSAEPS 1636

Query: 315  LGSKEAIKGSENN---RTDTFDTELNLVHQNATSTDNVKNDA---DGASGGV-----LTA 169
            + ++ ++     N     D  +  LNL H+NA + D+ K  A   + +  G      L+A
Sbjct: 1637 VNAEGSLLDKLQNGGKTPDEANDALNLNHRNAANKDDSKESASLPEASDVGTTFISGLSA 1696

Query: 168  MTFLRRKRRR 139
            M  L+RKRRR
Sbjct: 1697 MPSLKRKRRR 1706


>XP_012444025.1 PREDICTED: DNA repair protein UVH3 isoform X1 [Gossypium raimondii]
          Length = 1710

 Score =  741 bits (1913), Expect = 0.0
 Identities = 450/910 (49%), Positives = 565/910 (62%), Gaps = 70/910 (7%)
 Frame = -3

Query: 2658 KGVQLVKGQRLGASDKGDGHLTHDKKCSEDRSNSGDVVFGDSSYAILVDGKKNDCEAEIS 2479
            K V    G+ L  S + DG  T      +D S+S D   GD    I VD KK   E E S
Sbjct: 818  KEVDFPTGKHLDVSKEVDGLSTISDSWFKDNSHSFDAAHGDIPDTIQVD-KKTGSEDEPS 876

Query: 2478 VLVSDKKIEIEAEM-----KHNFIAEPLCHTIGTSDPSIPMAESSGYASIYNTVIERKLD 2314
             LVSD K  IEAE+     K +F A+P   ++ T + SIP  +SS    I +  IE++L 
Sbjct: 877  NLVSDNKSSIEAEILDQDKKIDFEAKPSQQSVDTVNLSIPTVQSSANKVISDLHIEQELS 936

Query: 2313 AEKTHDTDLKDGKQYTGKYAIKVNENVRAEATEKIL-EEMLILDEECMNLGDEQKKLERN 2137
             + T++  +   +Q+T    IK N+N   + ++  L EE+LILD+EC+N+ DEQ+KLERN
Sbjct: 937  GDITYENCVNKAEQHTDMSTIKGNDNEEIKFSKASLDEELLILDQECINMVDEQRKLERN 996

Query: 2136 AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFLFGARS 1957
            AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMEL NLVDGVVTDDSDVFLFGARS
Sbjct: 997  AESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELTNLVDGVVTDDSDVFLFGARS 1056

Query: 1956 VYKNIFDDRKYVETYFMQDIEKELGLTREKLIRIALLLGSDYTEGISGIGIVNAIEVVNA 1777
            VYKNIFDDRKYVETYFMQDIEKELGLTREKL+R+ALLLGSDYTEG+SGIGIVNAIEVVNA
Sbjct: 1057 VYKNIFDDRKYVETYFMQDIEKELGLTREKLMRMALLLGSDYTEGVSGIGIVNAIEVVNA 1116

Query: 1776 FPEEDGLLKFREWIESPDPAILGKFDVQTGASSRKIRPRNGNNDVNHAKNNV------EG 1615
            FPEEDGL KFREWIESPDP ILGK +VQ G+S+RK  P++   DVN  K +        G
Sbjct: 1117 FPEEDGLHKFREWIESPDPTILGKLNVQEGSSARKRGPKSTEKDVNGTKTSTRGSESNNG 1176

Query: 1614 VSEFDESISQFDEDKQSADYSQNMK-IFMDKHRNVSKNWHIPSSFPSEAVISAYFCPQVD 1438
             S  D++  Q D++ QS D + ++K IFMDKHRNVSKNWHIPSSFPSEAVISAY  PQVD
Sbjct: 1177 TSSLDQNSFQADKNMQSTDCTDDIKQIFMDKHRNVSKNWHIPSSFPSEAVISAYSLPQVD 1236

Query: 1437 KSTEPFSWGKPDLFVLRKFCWDKFGWGSDKSNELLVPVLKEYEKRETQLRLEAFYSFNER 1258
            KSTEPF+WG+PDLFVLRK CW+KFGWGS KS+ELL+PVL+E EKRETQLR+EAFY+FNER
Sbjct: 1237 KSTEPFTWGRPDLFVLRKLCWEKFGWGSQKSDELLLPVLRESEKRETQLRMEAFYTFNER 1296

Query: 1257 FAKIRSNRIKKAVKGITGNQSLESKDDAGQEVSKSRKKRRNNGLENGNNQSQKASKEAKE 1078
            FAKIRS RIKKAVKGITGNQS E  DD  Q+VSKSR+KRR + +++G+++S + S + KE
Sbjct: 1297 FAKIRSKRIKKAVKGITGNQSSELIDDGMQQVSKSRRKRRASPVQSGDDKSGEPSNK-KE 1355

Query: 1077 SVAG--APSNMEKSTPRQSRKRKVLKKFVSSEMENSE--------RLALADSGANXXXXX 928
             +A      + +KS P+ SRKR+   K VS EM   E        R     S  N     
Sbjct: 1356 DIASRCQSKSTDKSVPKTSRKRQSSGKDVSFEMRTPEPQLQTLRRRETNKQSAGNGRGRG 1415

Query: 927  XXXXXXXXXXXXXGMLCAERSETXXXXXXXXXXSQEYYAEQLETQQEVQRSTRSRKPVNY 748
                              ++ ET          +QE   E+L+  +EV+RS  +R PVNY
Sbjct: 1416 GGEGRRRKGSSGF-----QQFETSSSGGDSGNVNQEVDGEKLDQPREVRRSMHTRNPVNY 1470

Query: 747  CVNDPEIDDVGKIVSIEECSNKEVAEQDLVHGVCAGASADCSRTKQHRAGDPSIDK---D 577
             V D E D+ G  +S +E S ++  E++        A  D     Q  A +PS+D    D
Sbjct: 1471 TVKDLE-DEGG--LSHKESSGEDAMEKE--------AGEDVKEKIQCEAREPSLDNIYGD 1519

Query: 576  YIERGGGFCID--------------------------------DGEIAQPTMSPSDDPFF 493
            Y+E GGGFC+D                                +G+I QP  S   +PF 
Sbjct: 1520 YLETGGGFCMDERGTDLPDANQDVDLETEPTNDYLKMGGGFYMEGDIDQPDTSQDVNPFS 1579

Query: 492  EAETSKDYMKMGGGFCEDESETCEDQVAAQ-DSVISGENPSTCLDSLDGVDCDAGLGDST 316
            E  ++ DY+KMGGGFC +ESET  +  A   +  +     S C   +D  D +    + +
Sbjct: 1580 ETGSANDYLKMGGGFCMEESETIGNPDAGNYEDPVQATESSNCFAFMDKADDNIDSAEPS 1639

Query: 315  LGSKEAIKGSENN---RTDTFDTELNLVHQNATSTDNVKNDA---DGASGGV-----LTA 169
            + ++ ++     N     D  +  LNL H+NA + D+ K  A   + +  G      L+A
Sbjct: 1640 VNAEGSLLDKLQNGGKTPDEANDALNLNHRNAANKDDSKESASLPEASDVGTTFISGLSA 1699

Query: 168  MTFLRRKRRR 139
            M  L+RKRRR
Sbjct: 1700 MPSLKRKRRR 1709