BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Phellodendron21_contig00005562
         (1596 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_006473714.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   704   0.0  
XP_017621288.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   583   0.0  
XP_016725957.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   580   0.0  
XP_016687702.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   579   0.0  
XP_012444688.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   579   0.0  
XP_018808134.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   579   0.0  
KHG01344.1 hypothetical protein F383_22314 [Gossypium arboreum]       578   0.0  
XP_017621287.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   575   0.0  
XP_011034961.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   571   0.0  
EOY15125.1 Pseudouridine synthase family protein isoform 1 [Theo...   572   0.0  
XP_002301949.1 pseudouridine synthase family protein [Populus tr...   571   0.0  
XP_007017900.2 PREDICTED: RNA pseudouridine synthase 2, chloropl...   572   0.0  
XP_012078835.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   569   0.0  
OMO87357.1 hypothetical protein CCACVL1_09113 [Corchorus capsula...   568   0.0  
XP_015384244.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   560   0.0  
XP_015887376.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   564   0.0  
OAY46620.1 hypothetical protein MANES_06G014100 [Manihot esculenta]   562   0.0  
XP_003634352.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   559   0.0  
XP_010533976.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   555   0.0  
XP_010241330.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   555   0.0  

>XP_006473714.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Citrus sinensis]
          Length = 421

 Score =  704 bits (1817), Expect = 0.0
 Identities = 361/417 (86%), Positives = 376/417 (90%), Gaps = 4/417 (0%)
 Frame = -1

Query: 1575 MLSLNPATLCSAPCTKALQFSPITIPCSVLKILRARCYSS--GDKNREPLPIANYAGIQL 1402
            MLSLN A+  SA CTK LQFSP  IP  V KILRARC SS  G  NREP  IANYAG+QL
Sbjct: 3    MLSLNSASWGSASCTKGLQFSPTKIPFGVFKILRARCSSSSSGGNNREP--IANYAGVQL 60

Query: 1401 EETVDVKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDKVNC 1222
            EETVD KAGKLRLD+WISSRIDGISR RVQSSIR+GLV +NGQVV+K SHNVK GD VNC
Sbjct: 61   EETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMVNC 120

Query: 1221 TISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCSLPA 1042
            TISELQPLRAEAEDIPLDIVYEDDNVLV+NKPAHMVVHPAPGNA+GTLVNGILHHCSLP 
Sbjct: 121  TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 180

Query: 1041 VASLNQEAFSDAEDIYD--ELSSSISGASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSE 868
            +AS NQEAFSDAEDI D  E SSSISGAS+RPGIVHRLDKGTSGLLVVAKDEHSHAHLSE
Sbjct: 181  LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSE 240

Query: 867  QFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARHAASRYK 688
            QFKLHTI+RVYISLTSGVPSQSSG IEVPI RDPNNRIRMAAIPGSNKH QARHAASRYK
Sbjct: 241  QFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYK 300

Query: 687  VIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAMSLLQPRTSTS 508
            VIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMA SLLQPRT+  
Sbjct: 301  VIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAKSLLQPRTAPG 360

Query: 507  SQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRLREIGTEK 337
            S GK+LKLVSGL+RPCLHA ALGFTHPHT EKI FSCPPP DFAEI S+LREIGTEK
Sbjct: 361  SHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPADFAEILSQLREIGTEK 417


>XP_017621288.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Gossypium arboreum]
          Length = 432

 Score =  583 bits (1502), Expect = 0.0
 Identities = 297/427 (69%), Positives = 341/427 (79%), Gaps = 16/427 (3%)
 Frame = -1

Query: 1554 TLCSAPCTKALQFSPITI----------PCSVLKILRARCYSSGDKNREPLPIANYAGIQ 1405
            T C  P +KALQ SP  +          P ++ +ILRA   S+     E     +YAG+Q
Sbjct: 6    TCCPFPSSKALQISPSFLLLSSRNPKFLPFTISRILRATSISTSAAKHEEPTRTSYAGVQ 65

Query: 1404 LEETVD-VKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDKV 1228
            LEETVD  K GKLRLDSWISSRI GISR RVQSSI++GLV VNG+VV+K SH+++AGDKV
Sbjct: 66   LEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDKV 125

Query: 1227 NCTISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCSL 1048
            NC IS+LQPL+AE EDIPLDIV+EDD+VLV+NKP+HMVVHPAPGNA+GTLVNGILHHCSL
Sbjct: 126  NCVISDLQPLKAEPEDIPLDIVFEDDHVLVVNKPSHMVVHPAPGNANGTLVNGILHHCSL 185

Query: 1047 PAVASLNQEAFSDAEDIYDELS-----SSISGASVRPGIVHRLDKGTSGLLVVAKDEHSH 883
            P VAS  +E   D ED+ D+       +S   ASVRPGIVHRLDKGTSGLLVVAKDEHSH
Sbjct: 186  PTVASSEKEVLFDTEDMSDDEQDIFHGASAGAASVRPGIVHRLDKGTSGLLVVAKDEHSH 245

Query: 882  AHLSEQFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARHA 703
            AHLSEQFK HTIQRVYISLT GVPS S+G +++PIGRD NNRIRMAA+PG + H +ARHA
Sbjct: 246  AHLSEQFKQHTIQRVYISLTCGVPSASAGRVDIPIGRDSNNRIRMAAVPGLSHHGRARHA 305

Query: 702  ASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAMSLLQP 523
            ASRYKVIE+LAGGGSALV+WRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMA+SLL+P
Sbjct: 306  ASRYKVIEVLAGGGSALVQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMALSLLRP 365

Query: 522  RTSTSSQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRLREIGT 343
            RT      +L +LVS LERP LHA  LGF HPH+GEK+ FSCPPPPDF EI + LR+IG 
Sbjct: 366  RTPPYYNDELSRLVSRLERPYLHALVLGFEHPHSGEKMRFSCPPPPDFGEILNHLRKIGI 425

Query: 342  EKPKQRE 322
            EKP  +E
Sbjct: 426  EKPISKE 432


>XP_016725957.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
            [Gossypium hirsutum]
          Length = 432

 Score =  580 bits (1496), Expect = 0.0
 Identities = 299/428 (69%), Positives = 343/428 (80%), Gaps = 17/428 (3%)
 Frame = -1

Query: 1554 TLCSAPCTKALQFSPITI----------PCSVLKILRARCYS-SGDKNREPLPIANYAGI 1408
            T C  P +KALQ SP  +          P ++ +ILRA   S S  K+ EP+   +YAG+
Sbjct: 6    TCCPFPSSKALQISPSFLLLSSRNPKFLPFTISRILRAISISTSAAKHEEPIR-TSYAGV 64

Query: 1407 QLEETVD-VKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDK 1231
            QLEETVD  K GKLRLDSWISSRI GISR RVQSSI++GLV VNG+VV+K SH+++AGDK
Sbjct: 65   QLEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDK 124

Query: 1230 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCS 1051
            VNC IS+LQPL+AE EDIPLDIV+EDD+VLV+NKP+HMVVHPAPGNA+GTLVNGILHHCS
Sbjct: 125  VNCVISDLQPLKAEPEDIPLDIVFEDDHVLVVNKPSHMVVHPAPGNANGTLVNGILHHCS 184

Query: 1050 LPAVASLNQEAFSDAEDIYDELSSSISGAS-----VRPGIVHRLDKGTSGLLVVAKDEHS 886
            LP VAS  +E   D ED+ D+      GAS     VRPGIVHRLDKGTSGLLVVAKDEHS
Sbjct: 185  LPTVASSEKEVLFDTEDMSDDEQDIFHGASAGPASVRPGIVHRLDKGTSGLLVVAKDEHS 244

Query: 885  HAHLSEQFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARH 706
            HAHLSEQFK HTIQRVYISLT GVPS S+G +++PIGRD NNRIRM A+PG + H +ARH
Sbjct: 245  HAHLSEQFKQHTIQRVYISLTCGVPSASAGRVDIPIGRDSNNRIRMVAVPGLSHHGRARH 304

Query: 705  AASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAMSLLQ 526
            AASRYKVIE+LAGGGSALV+WRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMA+SLL+
Sbjct: 305  AASRYKVIEVLAGGGSALVQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMALSLLR 364

Query: 525  PRTSTSSQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRLREIG 346
            PRT      +L +LVS LERP LHA  LGF HPH+GEK+ FSCPPPPDF EI + LR+IG
Sbjct: 365  PRTPPYYNDELSRLVSRLERPYLHALVLGFEHPHSGEKMRFSCPPPPDFGEILNHLRKIG 424

Query: 345  TEKPKQRE 322
             EKP  +E
Sbjct: 425  IEKPISKE 432


>XP_016687702.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
            X1 [Gossypium hirsutum]
          Length = 432

 Score =  579 bits (1493), Expect = 0.0
 Identities = 298/428 (69%), Positives = 344/428 (80%), Gaps = 17/428 (3%)
 Frame = -1

Query: 1554 TLCSAPCTKALQFSPITI----------PCSVLKILRARCYS-SGDKNREPLPIANYAGI 1408
            T C  P +KALQ SP  +          P ++ +ILRA   S S  K+ EP+   +YAG+
Sbjct: 6    TCCPFPSSKALQISPSFLLLSSRNPKFLPFTISRILRATSISTSATKHEEPIR-TSYAGV 64

Query: 1407 QLEETVD-VKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDK 1231
            QLEETVD  K GKLRLDSWISSRI GISR RVQSSI++GLV VNG+VV+K SH+++AGDK
Sbjct: 65   QLEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDK 124

Query: 1230 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCS 1051
            V+C IS+LQPL+AE EDIPLDIV+EDD+VLV+NKP+HMVVHPAPGNA+GTLVNGILHHCS
Sbjct: 125  VDCVISDLQPLKAEPEDIPLDIVFEDDHVLVVNKPSHMVVHPAPGNANGTLVNGILHHCS 184

Query: 1050 LPAVASLNQEAFSDAEDIYDELS-----SSISGASVRPGIVHRLDKGTSGLLVVAKDEHS 886
            LP VAS  +E   D +D+ D+       +S   ASVRPGIVHRLDKGTSGLLVVAKDE+S
Sbjct: 185  LPTVASSEKEVLFDTQDMSDDEQDIFHGASAGAASVRPGIVHRLDKGTSGLLVVAKDEYS 244

Query: 885  HAHLSEQFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARH 706
            HAHLSEQFK HTIQRVYISLT GVPS SSG +++PIGRD NNRIRM A+PG + H QARH
Sbjct: 245  HAHLSEQFKQHTIQRVYISLTCGVPSASSGRVDIPIGRDSNNRIRMVAVPGLSHHGQARH 304

Query: 705  AASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAMSLLQ 526
            AASRYKVIE+LAGGGSALV+WRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMA+SLL+
Sbjct: 305  AASRYKVIEVLAGGGSALVQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMALSLLR 364

Query: 525  PRTSTSSQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRLREIG 346
            PRT      +L +LVS LERP LHA  LGF HPH+GEK+ FSCPPPPDF EI + LR+IG
Sbjct: 365  PRTPPYYNDELSRLVSRLERPYLHALVLGFEHPHSGEKMRFSCPPPPDFGEILNHLRKIG 424

Query: 345  TEKPKQRE 322
             EKP  +E
Sbjct: 425  IEKPISKE 432


>XP_012444688.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Gossypium
            raimondii]
          Length = 432

 Score =  579 bits (1493), Expect = 0.0
 Identities = 298/428 (69%), Positives = 344/428 (80%), Gaps = 17/428 (3%)
 Frame = -1

Query: 1554 TLCSAPCTKALQFSPITI----------PCSVLKILRARCYS-SGDKNREPLPIANYAGI 1408
            T C  P +KALQ SP  +          P ++ +ILRA   S S  K+ EP+   +YAG+
Sbjct: 6    TCCPFPSSKALQISPSFLLLSSRNPKFLPFTISRILRATSISTSATKHEEPIR-TSYAGV 64

Query: 1407 QLEETVD-VKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDK 1231
            QLEETVD  K GKLRLDSWISSRI GISR RVQSSI++GLV VNG+VV+K SH+++AGDK
Sbjct: 65   QLEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDK 124

Query: 1230 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCS 1051
            V+C IS+LQPL+AE EDIPLDIV+EDD+VLV+NKP+HMVVHPAPGNA+GTLVNGILHHCS
Sbjct: 125  VDCVISDLQPLKAEPEDIPLDIVFEDDHVLVVNKPSHMVVHPAPGNANGTLVNGILHHCS 184

Query: 1050 LPAVASLNQEAFSDAEDIYDELS-----SSISGASVRPGIVHRLDKGTSGLLVVAKDEHS 886
            LP VAS  +E   D ED+ D+       +S   ASVRPGIVHRLDKGTSGLLVVAKDE+S
Sbjct: 185  LPTVASSEKEVLFDTEDMSDDEQDIFHGASAGAASVRPGIVHRLDKGTSGLLVVAKDEYS 244

Query: 885  HAHLSEQFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARH 706
            HAHLSEQFK HTIQRVYISLT GVPS +SG +++PIGRD NNRIRM A+PG + H QARH
Sbjct: 245  HAHLSEQFKQHTIQRVYISLTCGVPSAASGRVDIPIGRDSNNRIRMVAVPGLSHHGQARH 304

Query: 705  AASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAMSLLQ 526
            AASRYKVIE+LAGGGSALV+WRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMA+SLL+
Sbjct: 305  AASRYKVIEVLAGGGSALVQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMALSLLR 364

Query: 525  PRTSTSSQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRLREIG 346
            PRT      +L +LVS LERP LHA  LGF HPH+GEK+ FSCPPPPDF EI + LR+IG
Sbjct: 365  PRTPPYYNDELSRLVSRLERPYLHALVLGFEHPHSGEKMRFSCPPPPDFGEILNHLRKIG 424

Query: 345  TEKPKQRE 322
             EKP  +E
Sbjct: 425  IEKPISKE 432


>XP_018808134.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Juglans regia]
          Length = 446

 Score =  579 bits (1493), Expect = 0.0
 Identities = 299/408 (73%), Positives = 335/408 (82%), Gaps = 20/408 (4%)
 Frame = -1

Query: 1500 PCSVLKILRARCYSSG----DKNREPLP--IANYAGIQLEETVDVKAGKLRLDSWISSRI 1339
            P S L+I      SSG    D+++E L    AN+ G+QLE+TV + +GKLRLDSWISSRI
Sbjct: 34   PSSSLRICFVASSSSGSTNSDEDKEDLAGRRANFGGVQLEDTVSLNSGKLRLDSWISSRI 93

Query: 1338 DGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDKVNCTISELQPLRAEAEDIPLDIVY 1159
             GISR RVQSSIR+GLV VNG+VV+K SHNVK GDKVNCTISELQPLRA  EDIPLDIV+
Sbjct: 94   GGISRARVQSSIRSGLVAVNGRVVDKVSHNVKTGDKVNCTISELQPLRAVPEDIPLDIVF 153

Query: 1158 EDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCSLPAVASLNQEAFSDAEDIYDELSS 979
            ED++VLV+NKPAHMVVHPAPGNA+GTLVNG+LHHCS P VA  N+E  SDAEDI D+  S
Sbjct: 154  EDEHVLVVNKPAHMVVHPAPGNATGTLVNGVLHHCSPPVVAFSNEEVLSDAEDISDDELS 213

Query: 978  SIS--------------GASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIQR 841
            S S              GAS+RPGIVHRLDKGTSGLLVVAKDEHSHA+LSEQFKLHTIQR
Sbjct: 214  SFSAGQNPNDGLYSRRSGASIRPGIVHRLDKGTSGLLVVAKDEHSHANLSEQFKLHTIQR 273

Query: 840  VYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARHAASRYKVIEILAGGG 661
            +Y+SLTSGVPS  +G +EVPIGRD NNRIRMAAIPGSN   QARHAASRYKVIEILAGG 
Sbjct: 274  LYVSLTSGVPSPMAGRVEVPIGRDLNNRIRMAAIPGSNISRQARHAASRYKVIEILAGGS 333

Query: 660  SALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAMSLLQPRTSTSSQGKLLKLV 481
            SALVEWRLETGRTHQIRAHAKY+GIPLLGDEVYGGTK+MA+SLL+PRT  S  G+LL+LV
Sbjct: 334  SALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLRPRTPPSRHGQLLQLV 393

Query: 480  SGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRLREIGTEK 337
            S LERPCLHA ALGF HPHT E ++F CPPP DFAEI  +LR+IGT K
Sbjct: 394  SRLERPCLHALALGFMHPHTMENVYFQCPPPADFAEILGQLRKIGTVK 441


>KHG01344.1 hypothetical protein F383_22314 [Gossypium arboreum]
          Length = 446

 Score =  578 bits (1490), Expect = 0.0
 Identities = 295/424 (69%), Positives = 338/424 (79%), Gaps = 16/424 (3%)
 Frame = -1

Query: 1554 TLCSAPCTKALQFSPITI----------PCSVLKILRARCYSSGDKNREPLPIANYAGIQ 1405
            T C  P +KALQ SP  +          P ++ +ILRA   S+     E     +YAG+Q
Sbjct: 6    TCCPFPSSKALQISPSFLLLSSRNPKFLPFTISRILRATSISTSAAKHEEPTRTSYAGVQ 65

Query: 1404 LEETVD-VKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDKV 1228
            LEETVD  K GKLRLDSWISSRI GISR RVQSSI++GLV VNG+VV+K SH+++AGDKV
Sbjct: 66   LEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDKV 125

Query: 1227 NCTISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCSL 1048
            NC IS+LQPL+AE EDIPLDIV+EDD+VLV+NKP+HMVVHPAPGNA+GTLVNGILHHCSL
Sbjct: 126  NCVISDLQPLKAEPEDIPLDIVFEDDHVLVVNKPSHMVVHPAPGNANGTLVNGILHHCSL 185

Query: 1047 PAVASLNQEAFSDAEDIYDELS-----SSISGASVRPGIVHRLDKGTSGLLVVAKDEHSH 883
            P VAS  +E   D ED+ D+       +S   ASVRPGIVHRLDKGTSGLLVVAKDEHSH
Sbjct: 186  PTVASSEKEVLFDTEDMSDDEQDIFHGASAGAASVRPGIVHRLDKGTSGLLVVAKDEHSH 245

Query: 882  AHLSEQFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARHA 703
            AHLSEQFK HTIQRVYISLT GVPS S+G +++PIGRD NNRIRM A+PG + H +ARHA
Sbjct: 246  AHLSEQFKQHTIQRVYISLTCGVPSASAGRVDIPIGRDSNNRIRMVAVPGLSHHGRARHA 305

Query: 702  ASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAMSLLQP 523
            ASRYKVIE+LAGGGSALV+WRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMA+SLL+P
Sbjct: 306  ASRYKVIEVLAGGGSALVQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMALSLLRP 365

Query: 522  RTSTSSQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRLREIGT 343
            RT      +L +LVS LERP LHA  LGF HPH+GEK+ FSCPPPPDF EI + LR+IG 
Sbjct: 366  RTPPYYNDELSRLVSRLERPYLHALVLGFEHPHSGEKMRFSCPPPPDFGEILNHLRKIGI 425

Query: 342  EKPK 331
            EK K
Sbjct: 426  EKVK 429


>XP_017621287.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Gossypium arboreum]
          Length = 437

 Score =  575 bits (1483), Expect = 0.0
 Identities = 296/432 (68%), Positives = 341/432 (78%), Gaps = 21/432 (4%)
 Frame = -1

Query: 1554 TLCSAPCTKALQFSPITI----------PCSVLKILRARCYSSGDKNREPLPIANYAGIQ 1405
            T C  P +KALQ SP  +          P ++ +ILRA   S+     E     +YAG+Q
Sbjct: 6    TCCPFPSSKALQISPSFLLLSSRNPKFLPFTISRILRATSISTSAAKHEEPTRTSYAGVQ 65

Query: 1404 LEETVD-VKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDKV 1228
            LEETVD  K GKLRLDSWISSRI GISR RVQSSI++GLV VNG+VV+K SH+++AGDKV
Sbjct: 66   LEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGLVKVNGRVVDKVSHSLRAGDKV 125

Query: 1227 NCTISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCSL 1048
            NC IS+LQPL+AE EDIPLDIV+EDD+VLV+NKP+HMVVHPAPGNA+GTLVNGILHHCSL
Sbjct: 126  NCVISDLQPLKAEPEDIPLDIVFEDDHVLVVNKPSHMVVHPAPGNANGTLVNGILHHCSL 185

Query: 1047 PAVASLNQEAFSDAEDIYDE-----LSSSISGASVRPGIVHRLDKGTSGLLVVAKDEHSH 883
            P VAS  +E   D ED+ D+       +S   ASVRPGIVHRLDKGTSGLLVVAKDEHSH
Sbjct: 186  PTVASSEKEVLFDTEDMSDDEQDIFHGASAGAASVRPGIVHRLDKGTSGLLVVAKDEHSH 245

Query: 882  AHLSEQFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARHA 703
            AHLSEQFK HTIQRVYISLT GVPS S+G +++PIGRD NNRIRMAA+PG + H +ARHA
Sbjct: 246  AHLSEQFKQHTIQRVYISLTCGVPSASAGRVDIPIGRDSNNRIRMAAVPGLSHHGRARHA 305

Query: 702  A-----SRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAM 538
            A     +RYKVIE+LAGGGSALV+WRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMA+
Sbjct: 306  ARSFPFTRYKVIEVLAGGGSALVQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAL 365

Query: 537  SLLQPRTSTSSQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRL 358
            SLL+PRT      +L +LVS LERP LHA  LGF HPH+GEK+ FSCPPPPDF EI + L
Sbjct: 366  SLLRPRTPPYYNDELSRLVSRLERPYLHALVLGFEHPHSGEKMRFSCPPPPDFGEILNHL 425

Query: 357  REIGTEKPKQRE 322
            R+IG EKP  +E
Sbjct: 426  RKIGIEKPISKE 437


>XP_011034961.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Populus
            euphratica]
          Length = 416

 Score =  571 bits (1472), Expect = 0.0
 Identities = 298/423 (70%), Positives = 341/423 (80%), Gaps = 5/423 (1%)
 Frame = -1

Query: 1575 MLSLNPATLCSAPCTKALQFSPITIPCSVLKILRARCYSSGDKNREPLPIANYAGIQLEE 1396
            MLS++  + CSAP      F       S L  + +      + N+ P    NY+G++LEE
Sbjct: 1    MLSISSVSRCSAPSF----FLSQKPTASRLLTVHSSSTREPNSNQNPGERINYSGVKLEE 56

Query: 1395 TVDVKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDKVNCTI 1216
            +VD K+GK RLDSWISSRI GISR RVQSSI++GLV VNG+V++K SHNVKAGDKVNC I
Sbjct: 57   SVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHNVKAGDKVNCVI 116

Query: 1215 SELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCSLPAVA 1036
            SELQPLRAE E+IPLDIVYED+NVLV+NKPAHMVVHPAPGNA+GTLVNGILHHCSLP V+
Sbjct: 117  SELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVS 176

Query: 1035 SLNQEAFSDAEDIYDE-----LSSSISGASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 871
            S  QE  S AED+ D+     L SS   ASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLS
Sbjct: 177  S--QEVLSGAEDVSDDDDDEGLCSSSHAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLS 234

Query: 870  EQFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARHAASRY 691
            EQFKLHTI+RVY+SLT GVP+  +G I+VPIGRD +NRIRMAAI   N+  QARHAASRY
Sbjct: 235  EQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAAIAEPNR-GQARHAASRY 293

Query: 690  KVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAMSLLQPRTST 511
            KVIEILA GGSALVEWRLETGRTHQIRAHAKY+GIPLLGDEVYGGT+NMA+SLL+ RT  
Sbjct: 294  KVIEILARGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQP 353

Query: 510  SSQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRLREIGTEKPK 331
            S   +L   +SGLERPCLHA ALGFTHP TG++IHF+CPPPPDF EI S+LRE+GTEKP 
Sbjct: 354  SCHRQLSLSLSGLERPCLHALALGFTHPCTGKEIHFACPPPPDFTEILSQLREMGTEKPS 413

Query: 330  QRE 322
             +E
Sbjct: 414  FKE 416


>EOY15125.1 Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  572 bits (1473), Expect = 0.0
 Identities = 296/427 (69%), Positives = 336/427 (78%), Gaps = 18/427 (4%)
 Frame = -1

Query: 1548 CSAPCTKALQFSPITI----------PCSVLKILRARCYSSGD---KNREPLPIANYAGI 1408
            C  P TKA Q SP  +          P ++  ILRAR   S     K +EP+   +Y G+
Sbjct: 8    CPFPSTKAFQISPSFVFLSPRYPKLLPFTLSGILRARARPSSGCAAKTQEPIR-TSYTGV 66

Query: 1407 QLEETVD-VKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDK 1231
            QLEETVD  K GKLRLDSWISSRI GISR RVQSSI++GLV VNG+VV+K SH ++ GDK
Sbjct: 67   QLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGLRHGDK 126

Query: 1230 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCS 1051
            VNC ISELQPLRAE EDIPLDIVYEDD+VLV+NKP HMVVHPAPGNA+GTLVNGILHHCS
Sbjct: 127  VNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNGILHHCS 186

Query: 1050 LPAVASLNQEAFSDAEDIYDELSSSISGAS----VRPGIVHRLDKGTSGLLVVAKDEHSH 883
            LP VA   +E  SD ED+ D+      GAS    VRPGIVHRLDKGTSGLLVVAKDEHSH
Sbjct: 187  LPTVALSEKEVLSDTEDVSDDDEGFCYGASAAASVRPGIVHRLDKGTSGLLVVAKDEHSH 246

Query: 882  AHLSEQFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARHA 703
            +HLSEQFK HTIQRVYISLT GVPS S+G +++ IGRD NNR+RM A+PG N H +ARHA
Sbjct: 247  SHLSEQFKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRMIAVPGLNHHGRARHA 306

Query: 702  ASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAMSLLQP 523
            ASRYKVIE+LAGGGSAL++WRLETGRTHQIRAHAKYMGIPLLGDEVYGGTK+MA+SLL+P
Sbjct: 307  ASRYKVIEVLAGGGSALIQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRP 366

Query: 522  RTSTSSQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRLREIGT 343
            RT  +   +L +LVS LERP LHA  LGF HPH+ E +HFSC PPPDFAEI S LR+IGT
Sbjct: 367  RTPPNYNDQLSRLVSRLERPYLHALVLGFEHPHSREMMHFSCQPPPDFAEILSDLRKIGT 426

Query: 342  EKPKQRE 322
            EKP  +E
Sbjct: 427  EKPTFKE 433


>XP_002301949.1 pseudouridine synthase family protein [Populus trichocarpa]
            EEE81222.1 pseudouridine synthase family protein [Populus
            trichocarpa]
          Length = 444

 Score =  571 bits (1472), Expect = 0.0
 Identities = 299/422 (70%), Positives = 341/422 (80%), Gaps = 4/422 (0%)
 Frame = -1

Query: 1575 MLSLNPATLCSAPCTKALQFSPITIPCSVLKILRARCYSSGDKNREPLPIANYAGIQLEE 1396
            MLS++  + CSAP      F       S L  + +      + N+ P    NY+G++LEE
Sbjct: 30   MLSISSVSRCSAPSF----FLSQKPTASRLLTVHSSSTREPNSNQNPGQRINYSGVKLEE 85

Query: 1395 TVDVKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDKVNCTI 1216
            +VD K+GK RLDSWISSRI GISR RVQSSI++GLV VNG+V++K SHNVKAGDKVNC I
Sbjct: 86   SVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLVSVNGKVIDKVSHNVKAGDKVNCVI 145

Query: 1215 SELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCSLPAVA 1036
            SELQPLRAE E+IPLDIVYED+NVLV+NKPAHMVVHPAPGNA+GTLVNGILHHCSLP V+
Sbjct: 146  SELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVS 205

Query: 1035 SLNQEAFSDAEDIYDE----LSSSISGASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSE 868
            S  QE  S AED+ D+    L SS   ASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSE
Sbjct: 206  S--QEVLSGAEDVSDDDDEGLCSSSYAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSE 263

Query: 867  QFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARHAASRYK 688
            QFKLHTI+RVY+SLT GVP+  +G I+VPIGRD +NRIRMAAI   N+  QARHAASRYK
Sbjct: 264  QFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAAIVEPNR-GQARHAASRYK 322

Query: 687  VIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAMSLLQPRTSTS 508
            VIEILAGGGSALVEWRLETGRTHQIRAHAKY+GIPLLGDEVYGGT+NMA+SLL+ RT  S
Sbjct: 323  VIEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQPS 382

Query: 507  SQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRLREIGTEKPKQ 328
               +L   +SGLERPCLHA ALGFTHP TG++IHFSCPPPPDF EI S+LRE+GTEK   
Sbjct: 383  CHRQLSLSLSGLERPCLHALALGFTHPCTGKEIHFSCPPPPDFTEILSQLREMGTEKLSF 442

Query: 327  RE 322
            +E
Sbjct: 443  KE 444


>XP_007017900.2 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Theobroma
            cacao]
          Length = 463

 Score =  572 bits (1473), Expect = 0.0
 Identities = 296/427 (69%), Positives = 336/427 (78%), Gaps = 18/427 (4%)
 Frame = -1

Query: 1548 CSAPCTKALQFSPITI----------PCSVLKILRARCYSSGD---KNREPLPIANYAGI 1408
            C  P TKA Q SP  +          P ++  ILRAR   S     K +EP+   +Y G+
Sbjct: 38   CPFPSTKAFQISPSFVFLSPRYPKLLPFTLSGILRARARPSSGCAAKTQEPIR-TSYTGV 96

Query: 1407 QLEETVD-VKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDK 1231
            QLEETVD  K GKLRLDSWISSRI GISR RVQSSI++GLV VNG+VV+K SH ++ GDK
Sbjct: 97   QLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGLRHGDK 156

Query: 1230 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCS 1051
            VNC ISELQPLRAE EDIPLDIVYEDD+VLV+NKP HMVVHPAPGNA+GTLVNGILHHCS
Sbjct: 157  VNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNGILHHCS 216

Query: 1050 LPAVASLNQEAFSDAEDIYDELSSSISGAS----VRPGIVHRLDKGTSGLLVVAKDEHSH 883
            LP VA   +E  SD ED+ D+      GAS    VRPGIVHRLDKGTSGLLVVAKDEHSH
Sbjct: 217  LPTVALSEKEVLSDTEDVSDDDEGFCYGASAAASVRPGIVHRLDKGTSGLLVVAKDEHSH 276

Query: 882  AHLSEQFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARHA 703
            +HLSEQFK HTIQRVYISLT GVPS S+G +++ IGRD NNR+RM A+PG N H +ARHA
Sbjct: 277  SHLSEQFKQHTIQRVYISLTCGVPSPSAGRVDISIGRDSNNRVRMIAVPGLNHHGRARHA 336

Query: 702  ASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAMSLLQP 523
            ASRYKVIE+LAGGGSAL++WRLETGRTHQIRAHAKYMGIPLLGDEVYGGTK+MA+SLL+P
Sbjct: 337  ASRYKVIEVLAGGGSALIQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRP 396

Query: 522  RTSTSSQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRLREIGT 343
            RT  +   +L +LVS LERP LHA  LGF HPH+ E +HFSC PPPDFAEI S LR+IGT
Sbjct: 397  RTPPNYNDQLSRLVSRLERPYLHALVLGFEHPHSREMMHFSCQPPPDFAEILSDLRKIGT 456

Query: 342  EKPKQRE 322
            EKP  +E
Sbjct: 457  EKPTFKE 463


>XP_012078835.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha
            curcas] XP_012078836.1 PREDICTED: RNA pseudouridine
            synthase 2, chloroplastic [Jatropha curcas]
          Length = 426

 Score =  569 bits (1467), Expect = 0.0
 Identities = 295/416 (70%), Positives = 333/416 (80%), Gaps = 12/416 (2%)
 Frame = -1

Query: 1548 CSAPCTKALQFS---------PITIPCSVLKI-LRARCYSSGDKNREPLPIANYAGIQLE 1399
            C  P  KALQ S         P   P S L + +   C  S +K  +   I NYAG++LE
Sbjct: 11   CIGPSAKALQSSSSISFFHRNPRVFPSSKLLLRMFTVCSGSSEKQNQNQRI-NYAGLRLE 69

Query: 1398 ETVDVKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDKVNCT 1219
            ETV+ K+GKLRLDSWISSRI GISR RVQSSI++GLV VNG+VV+K SH+VK GDKV CT
Sbjct: 70   ETVEAKSGKLRLDSWISSRISGISRARVQSSIKSGLVAVNGRVVDKVSHSVKVGDKVICT 129

Query: 1218 ISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCSLPAV 1039
            ISELQPLRAEAEDIPLDI+YEDD++LV+NKP HMVVHPAPGN +GTLVNGILHHCSLP V
Sbjct: 130  ISELQPLRAEAEDIPLDIIYEDDHLLVVNKPPHMVVHPAPGNPTGTLVNGILHHCSLPTV 189

Query: 1038 ASLNQEAFSDAEDIYDELSSSISG--ASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQ 865
             + +QE  SD EDI D+  S  S   +SVRPGIVHRLDKGTSGLLVVAKDEH+HAHLSEQ
Sbjct: 190  VTSSQEVLSDVEDISDDEGSCSSSCVSSVRPGIVHRLDKGTSGLLVVAKDEHAHAHLSEQ 249

Query: 864  FKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARHAASRYKV 685
            FK HTIQRVYISLTSGVPS  +G I++PIGRD NNRIRMAAI G  K   ARHAASRYKV
Sbjct: 250  FKQHTIQRVYISLTSGVPSALTGRIDIPIGRDVNNRIRMAAISGPVKQGHARHAASRYKV 309

Query: 684  IEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAMSLLQPRTSTSS 505
            IEILAGGGSALVEWRLETGRTHQIRAHAKY+GIPLLGDEVYG T  MA+SLL+PR   S 
Sbjct: 310  IEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGSTTGMALSLLRPRIPASF 369

Query: 504  QGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRLREIGTEK 337
            Q +L  L+SGLERPCLHA +LGFTHP TG++I+FSCPPPPDFA + S+LRE+  EK
Sbjct: 370  QNQLSSLLSGLERPCLHALSLGFTHPRTGKEINFSCPPPPDFAGVLSQLREMDMEK 425


>OMO87357.1 hypothetical protein CCACVL1_09113 [Corchorus capsularis]
          Length = 432

 Score =  568 bits (1463), Expect = 0.0
 Identities = 293/426 (68%), Positives = 334/426 (78%), Gaps = 17/426 (3%)
 Frame = -1

Query: 1548 CSAPCTKALQFS----------PITIPCSVLKILRARCYSSGD---KNREPLPIANYAGI 1408
            C  P TKA Q S          P  +P  V +I+  RC  S     K++EP+   +YAG+
Sbjct: 8    CPFPSTKAFQSSTSFLFLSLRIPKLVPFKVSRIVGGRCICSSSAAAKSQEPIR-TSYAGV 66

Query: 1407 QLEETVD-VKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDK 1231
            QLEETVD  K GKLRLDSWISSRI GISR RVQSSI++GLV VNG+VV+K SH ++AGDK
Sbjct: 67   QLEETVDETKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGLRAGDK 126

Query: 1230 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCS 1051
            VNC ISELQPLRAE EDIPLDIVYEDD+VLV+NKP HMVVHPAPGNA+GTLVNGILHHCS
Sbjct: 127  VNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNGILHHCS 186

Query: 1050 LPAVASLNQEAFSDAEDIYDELS---SSISGASVRPGIVHRLDKGTSGLLVVAKDEHSHA 880
            LP VA   +E  SD ED  D+        + A++RPGIVHRLDKGTSGLLVVAKDEHSHA
Sbjct: 187  LPTVALSEKELLSDTEDGSDDEGFPYGENAAAAIRPGIVHRLDKGTSGLLVVAKDEHSHA 246

Query: 879  HLSEQFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARHAA 700
            HLSEQFK HTIQRVYISLT GVPS S+G +++PIGRD NNR+RM A+PG +   +ARHAA
Sbjct: 247  HLSEQFKQHTIQRVYISLTCGVPSPSAGRVDIPIGRDSNNRVRMVAVPGISHPGRARHAA 306

Query: 699  SRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAMSLLQPR 520
            SRYKVIE+LAGGGSALV+WRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNM +SLL+PR
Sbjct: 307  SRYKVIEVLAGGGSALVQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMVLSLLRPR 366

Query: 519  TSTSSQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRLREIGTE 340
            T  S   +L +LVS LERP LHA  LGF HP + E +HFSCPPPPDF  I S+LR+IG E
Sbjct: 367  TPPSYNDQLSRLVSRLERPYLHALVLGFQHPQSSENMHFSCPPPPDFTGILSQLRKIGVE 426

Query: 339  KPKQRE 322
            KP  +E
Sbjct: 427  KPILKE 432


>XP_015384244.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Citrus sinensis]
          Length = 338

 Score =  560 bits (1444), Expect = 0.0
 Identities = 280/309 (90%), Positives = 289/309 (93%), Gaps = 2/309 (0%)
 Frame = -1

Query: 1257 SHNVKAGDKVNCTISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTL 1078
            SHNVK GD VNCTISELQPLRAEAEDIPLDIVYEDDNVLV+NKPAHMVVHPAPGNA+GTL
Sbjct: 26   SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85

Query: 1077 VNGILHHCSLPAVASLNQEAFSDAEDIYD--ELSSSISGASVRPGIVHRLDKGTSGLLVV 904
            VNGILHHCSLP +AS NQEAFSDAEDI D  E SSSISGAS+RPGIVHRLDKGTSGLLVV
Sbjct: 86   VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145

Query: 903  AKDEHSHAHLSEQFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNK 724
            AKDEHSHAHLSEQFKLHTI+RVYISLTSGVPSQSSG IEVPI RDPNNRIRMAAIPGSNK
Sbjct: 146  AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205

Query: 723  HTQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNM 544
            H QARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNM
Sbjct: 206  HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNM 265

Query: 543  AMSLLQPRTSTSSQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFS 364
            A SLLQPRT+  S GK+LKLVSGL+RPCLHA ALGFTHPHT EKI FSCPPP DFAEI S
Sbjct: 266  AKSLLQPRTAPGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPADFAEILS 325

Query: 363  RLREIGTEK 337
            +LREIGTEK
Sbjct: 326  QLREIGTEK 334


>XP_015887376.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Ziziphus
            jujuba]
          Length = 442

 Score =  564 bits (1453), Expect = 0.0
 Identities = 292/416 (70%), Positives = 331/416 (79%), Gaps = 14/416 (3%)
 Frame = -1

Query: 1539 PCTKALQFSPITIPCSVLKILRARCYSSG----DKNREPLP--IANYAGIQLEETVDVKA 1378
            P  K     P      + +ILRA   S+G    D N E L     NY+G++LEETV V +
Sbjct: 27   PNPKITACPPFASTSRISRILRATSTSTGVSISDGNDEALAGHRNNYSGVRLEETVAVDS 86

Query: 1377 GKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDKVNCTISELQPL 1198
             KLRLDSWISSR+ GISR RVQSSIR+GLV VNG++V+K SHNVKAGD+VNCTISELQPL
Sbjct: 87   RKLRLDSWISSRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCTISELQPL 146

Query: 1197 RAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCSLPAVASLNQEA 1018
            RAE E+IPLDIVYEDD+VLV+NKPAHMVVHPAPGNA+GTLVNGILHHCSLP VA  N + 
Sbjct: 147  RAEPENIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVAFSNHDG 206

Query: 1017 FSDAEDIYDE--------LSSSISGASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQF 862
             SD+ED  D+         SSS   ASVRPGIVHRLDKGTSGLLVVAK+E SHAHLS+QF
Sbjct: 207  LSDSEDNCDDGLGYFSVDQSSSTCQASVRPGIVHRLDKGTSGLLVVAKNELSHAHLSDQF 266

Query: 861  KLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARHAASRYKVI 682
            KLHTI RVYISLTSGVPS  +G +++PIGRD NNRIRM AIPG  K  Q RHAASRYKVI
Sbjct: 267  KLHTIHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQGRHAASRYKVI 326

Query: 681  EILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAMSLLQPRTSTSSQ 502
            E+LAGGGSALVEWRLETGRTHQIRAHAK++GIPLLGDE+YGGTK+MA+SLL PRT +S  
Sbjct: 327  EVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSMALSLLWPRTPSSCH 386

Query: 501  GKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEIFSRLREIGTEKP 334
            G+L +LVS  ERPCLHA AL F HPHTG+ IHFSCPPP DFAEI ++LR+  T KP
Sbjct: 387  GQLSQLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILNQLRKFSTAKP 442


>OAY46620.1 hypothetical protein MANES_06G014100 [Manihot esculenta]
          Length = 445

 Score =  562 bits (1449), Expect = 0.0
 Identities = 298/436 (68%), Positives = 338/436 (77%), Gaps = 32/436 (7%)
 Frame = -1

Query: 1548 CSAPCTKALQFS---------PITIPCSVL-KILRARCYSSGDKN--REPLPIANYAGIQ 1405
            C +P TKA Q S         P   P  VL +I      S+G  N         N+AG++
Sbjct: 9    CISPSTKAFQSSTSLPFFPLNPRGFPSRVLLRIFTVHSSSNGSLNSCENQSQRINFAGMR 68

Query: 1404 LEETVDVKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASHNVKAGDKVN 1225
            LEETV+ K GKLRLDSWISSRI GISR R+QSSI++GLV VNG+VVNK SHNVK GDKV+
Sbjct: 69   LEETVEAKCGKLRLDSWISSRISGISRARIQSSIKSGLVAVNGRVVNKVSHNVKGGDKVS 128

Query: 1224 CTISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVNGILHHCSLP 1045
            CTISELQPLRAE EDIPL+IVYED+++LV+NKP HMVVHPAPGN +GTLVNGILHHCSLP
Sbjct: 129  CTISELQPLRAEPEDIPLEIVYEDEHLLVVNKPPHMVVHPAPGNPTGTLVNGILHHCSLP 188

Query: 1044 AVASLNQEAFSDAEDIYDE--LSSSISGASVRPGIVHRLDKGTSGLLVVAK-DEHSHAHL 874
             VA+ +QE  SD EDI D+  L S++ G SVRPGIVHRLDKGTSGLLVVAK DEH+HAHL
Sbjct: 189  TVATSSQEVLSDVEDISDDEGLCSTLCGESVRPGIVHRLDKGTSGLLVVAKQDEHAHAHL 248

Query: 873  SEQFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGSNKHTQARHAAS- 697
            SEQFK H+IQRVY SLTSGVPS   G IE+PIGRD NNRIRM+AIPG  K  QARHAAS 
Sbjct: 249  SEQFKQHSIQRVYASLTSGVPSALRGRIEIPIGRDVNNRIRMSAIPGPIKQGQARHAASS 308

Query: 696  --RYKVIEILAGGGSALVEWRLETGRTH--------------QIRAHAKYMGIPLLGDEV 565
              RYKVIEILAGGGSALVEWRLETGRTH              QIRAHAKY+G+PLLGDEV
Sbjct: 309  FVRYKVIEILAGGGSALVEWRLETGRTHQFLYAYINSNFFLKQIRAHAKYIGVPLLGDEV 368

Query: 564  YGGTKNMAMSLLQPRTSTSSQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPP 385
            YGGT++MA+SLL+PR   S   +L  ++SGLERPCLHA ALGFTHPHTGE+IHFSCPPPP
Sbjct: 369  YGGTRSMALSLLRPRIPPSCHNQLSLMLSGLERPCLHALALGFTHPHTGEEIHFSCPPPP 428

Query: 384  DFAEIFSRLREIGTEK 337
            DFA I S+LR++G EK
Sbjct: 429  DFAGILSQLRKMGMEK 444


>XP_003634352.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Vitis vinifera] CBI18920.3 unnamed protein product,
            partial [Vitis vinifera]
          Length = 433

 Score =  559 bits (1441), Expect = 0.0
 Identities = 302/435 (69%), Positives = 345/435 (79%), Gaps = 19/435 (4%)
 Frame = -1

Query: 1578 IMLSLNPATLCSAPCTK--ALQFSPITIPCS-VLKILRARCYSSGDKNREPLPIA----- 1423
            ++ SLN A+  S   T   AL F      CS V +ILRA C +S D   EPL        
Sbjct: 1    MIFSLNSASFFSISHTSQSALLFPRNPKSCSRVFRILRA-CSNSTD---EPLVSVSGRRT 56

Query: 1422 NYAGIQLEETV-DVKA--GKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNKASH 1252
            NYAG++LEETV DV +  GKLRLDSWISSRI GISR RVQSSIR+GLV VN ++V+K SH
Sbjct: 57   NYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSH 116

Query: 1251 NVKAGDKVNCTISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGTLVN 1072
             ++AGDKVNCTISELQPLRAE EDIPLDIVYED++VLV+NKPAHMVVHPAPGNASGTLVN
Sbjct: 117  VIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVN 176

Query: 1071 GILHHCSLPAVASLNQEAFSDAEDIYDELSSSISGA--------SVRPGIVHRLDKGTSG 916
            GILHHCSLP VA  N++  S+ +DI D+  +S +          ++RPGIVHRLDKGTSG
Sbjct: 177  GILHHCSLPTVALPNRD--SEEDDISDDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTSG 234

Query: 915  LLVVAKDEHSHAHLSEQFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIP 736
            LLVVAKDEHSHAHLSEQFKLH+I RVYISLTSGVP+  SG +E+P+GRDPNNRIRM A+P
Sbjct: 235  LLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVP 294

Query: 735  GSNKHTQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGG 556
            G +   QARHAASRYKVIEILA GGSALVEWRLETGRTHQIRAHAKY+GIPLLGDEVYGG
Sbjct: 295  GPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGG 354

Query: 555  TKNMAMSLLQPRTSTSSQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFA 376
            TKNMA+SLL+PR  +S  G+L +LVS L+RPCLHA ALGF HP TG+ +HFSC PP DFA
Sbjct: 355  TKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFA 414

Query: 375  EIFSRLREIGTEKPK 331
            EI S LR+I TEK K
Sbjct: 415  EILSWLRKISTEKKK 429


>XP_010533976.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Tarenaya
            hassleriana]
          Length = 435

 Score =  555 bits (1431), Expect = 0.0
 Identities = 292/431 (67%), Positives = 340/431 (78%), Gaps = 18/431 (4%)
 Frame = -1

Query: 1575 MLSLNPATLCSAPCTKALQFSPITIPCS----VL-----KILRARCYSSG----DKNREP 1435
            ML+L+P +  S+   K+L+ S  +   S    VL     ++ R    SSG    D+ R P
Sbjct: 1    MLTLSPVSNLSSFTGKSLRSSSSSSSSSSSLSVLFSFFPRVSRFVRSSSGIPDSDRVRRP 60

Query: 1434 --LPIANYAGIQLEETVDVKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCVNGQVVNK 1261
               P A+ AG++ +ETVDV  GK+RLDSWISSR+ G+SR RVQSSIR GLVCVNG+VV+K
Sbjct: 61   EISPRASNAGVKFQETVDVATGKIRLDSWISSRVHGVSRARVQSSIRLGLVCVNGRVVDK 120

Query: 1260 ASHNVKAGDKVNCTISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPAPGNASGT 1081
             SHNVKAGD V+CTISELQPL+AE ED+PLDIVYED++VLV+NKPAHMVVHPAPGN +GT
Sbjct: 121  VSHNVKAGDMVSCTISELQPLKAEPEDMPLDIVYEDNHVLVVNKPAHMVVHPAPGNPNGT 180

Query: 1080 LVNGILHHCSLPAVASLNQEAFSDAEDIYDE---LSSSISGASVRPGIVHRLDKGTSGLL 910
            LVNGILHHCSLP VA  + E   D ED  ++   +SSS   ASVRPGIVHRLDKGTSGLL
Sbjct: 181  LVNGILHHCSLPIVAYSDTEVDPDEEDFSEDEETMSSSAYSASVRPGIVHRLDKGTSGLL 240

Query: 909  VVAKDEHSHAHLSEQFKLHTIQRVYISLTSGVPSQSSGYIEVPIGRDPNNRIRMAAIPGS 730
            VVAKDEHSHAHL+EQFK HTI+RVY+SLT GVPS S G I +PIGRD NNRIRMAAIPG 
Sbjct: 241  VVAKDEHSHAHLAEQFKQHTIERVYVSLTCGVPSPSHGRIVIPIGRDLNNRIRMAAIPGL 300

Query: 729  NKHTQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTK 550
            +   +ARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKY+G+PLLGDEVYG TK
Sbjct: 301  SNRGRARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYVGVPLLGDEVYGATK 360

Query: 549  NMAMSLLQPRTSTSSQGKLLKLVSGLERPCLHAFALGFTHPHTGEKIHFSCPPPPDFAEI 370
            +MA+SLLQ R S +  G++L+LVS L+RPCLHA  LGF HP TGE + FSCPPPPDFAE 
Sbjct: 361  SMALSLLQKRASRNDHGQILELVSRLDRPCLHALVLGFKHPCTGEDVKFSCPPPPDFAET 420

Query: 369  FSRLREIGTEK 337
               LR++GTEK
Sbjct: 421  LGMLRKLGTEK 431


>XP_010241330.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 443

 Score =  555 bits (1430), Expect = 0.0
 Identities = 275/393 (69%), Positives = 322/393 (81%), Gaps = 14/393 (3%)
 Frame = -1

Query: 1461 SSGDKNREPLPIANYAGIQLEETVDVKAGKLRLDSWISSRIDGISRGRVQSSIRTGLVCV 1282
            SS  +NR      N+AG+ LE+TV++ + K R+DSWISSRI GISR RVQSSI++GLV V
Sbjct: 55   SSEPQNRR----GNFAGVCLEDTVEISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSV 110

Query: 1281 NGQVVNKASHNVKAGDKVNCTISELQPLRAEAEDIPLDIVYEDDNVLVINKPAHMVVHPA 1102
            NG++++K SH ++AGDKVNCTI ELQPLRAE EDIPLDIVYED++VLV+NKPAHMVVHPA
Sbjct: 111  NGRIIDKVSHVIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPA 170

Query: 1101 PGNASGTLVNGILHHCSLPAVASLNQEAFSDAEDIYD--------------ELSSSISGA 964
            PGNA+GTLVNGILHHCSLP VA  N +  S+ +DI D              E++S+I   
Sbjct: 171  PGNANGTLVNGILHHCSLPMVALTNSKVLSETDDISDDESDIFSSTQGSMEEVTSNICEV 230

Query: 963  SVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIQRVYISLTSGVPSQSSGYIEV 784
            SVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTI R+Y+SLT GVPS +SG IEV
Sbjct: 231  SVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEV 290

Query: 783  PIGRDPNNRIRMAAIPGSNKHTQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAH 604
            PIGRD +NRIRMAA+P  N   QARHAASRY+V+E+LAGGGSALVEWRLETGRTHQIRAH
Sbjct: 291  PIGRDLSNRIRMAAVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAH 350

Query: 603  AKYMGIPLLGDEVYGGTKNMAMSLLQPRTSTSSQGKLLKLVSGLERPCLHAFALGFTHPH 424
            AKY+GIPLLGDEVYGGT+NMA+SLL+ R+ +S  G L +LVS L+RPCLHAF LGF HPH
Sbjct: 351  AKYLGIPLLGDEVYGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPH 410

Query: 423  TGEKIHFSCPPPPDFAEIFSRLREIGTEKPKQR 325
            TGE + FSCPPP DF E+ S+LR IG EKP ++
Sbjct: 411  TGENMQFSCPPPADFTEVLSQLRSIGIEKPLKK 443