BLASTX nr result
ID: Phellodendron21_contig00004618
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Phellodendron21_contig00004618
(539 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_010526340.1 PREDICTED: probable small nuclear ribonucleoprote... 88 1e-19
CDY65066.1 BnaAnng20030D, partial [Brassica napus] 88 2e-19
XP_009137902.1 PREDICTED: probable small nuclear ribonucleoprote... 88 2e-19
XP_010525728.1 PREDICTED: probable small nuclear ribonucleoprote... 87 3e-19
NP_001190872.1 small nuclear ribonucleoprotein F [Arabidopsis th... 87 3e-19
JAU27103.1 putative small nuclear ribonucleoprotein F [Noccaea c... 87 4e-19
XP_013595720.1 PREDICTED: probable small nuclear ribonucleoprote... 87 4e-19
NP_194751.1 small nuclear ribonucleoprotein F [Arabidopsis thali... 87 4e-19
XP_009137904.1 PREDICTED: probable small nuclear ribonucleoprote... 87 4e-19
XP_018449260.1 PREDICTED: probable small nuclear ribonucleoprote... 87 4e-19
JAU33764.1 putative small nuclear ribonucleoprotein F, partial [... 87 4e-19
CDY14182.1 BnaA08g13130D [Brassica napus] 86 5e-19
XP_002530746.1 PREDICTED: probable small nuclear ribonucleoprote... 86 5e-19
XP_010438202.1 PREDICTED: probable small nuclear ribonucleoprote... 86 7e-19
KJB53519.1 hypothetical protein B456_009G005500 [Gossypium raimo... 85 8e-19
XP_013738270.1 PREDICTED: probable small nuclear ribonucleoprote... 86 1e-18
XP_006412732.1 hypothetical protein EUTSA_v10026681mg [Eutrema s... 86 1e-18
XP_002325051.2 hypothetical protein POPTR_0018s09990g [Populus t... 85 1e-18
JAU66958.1 putative small nuclear ribonucleoprotein F, partial [... 86 1e-18
JAU85720.1 putative small nuclear ribonucleoprotein F, partial [... 86 1e-18
>XP_010526340.1 PREDICTED: probable small nuclear ribonucleoprotein F isoform X1
[Tarenaya hassleriana]
Length = 88
Score = 87.8 bits (216), Expect = 1e-19
Identities = 46/73 (63%), Positives = 50/73 (68%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
++TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ +
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGSAEEYID------- 53
Query: 500 RIYYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 54 ----GQLTGNLGE 62
>CDY65066.1 BnaAnng20030D, partial [Brassica napus]
Length = 106
Score = 88.2 bits (217), Expect = 2e-19
Identities = 47/74 (63%), Positives = 49/74 (66%)
Frame = +2
Query: 317 WLSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C 496
WL IP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ +
Sbjct: 18 WLPYIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYID------ 71
Query: 497 *RIYYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 72 -----GQLTGNLGE 80
>XP_009137902.1 PREDICTED: probable small nuclear ribonucleoprotein F [Brassica
rapa]
Length = 116
Score = 88.2 bits (217), Expect = 2e-19
Identities = 47/74 (63%), Positives = 49/74 (66%)
Frame = +2
Query: 317 WLSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C 496
WL IP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ +
Sbjct: 28 WLPYIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYID------ 81
Query: 497 *RIYYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 82 -----GQLTGNLGE 90
>XP_010525728.1 PREDICTED: probable small nuclear ribonucleoprotein F [Tarenaya
hassleriana]
Length = 89
Score = 87.0 bits (214), Expect = 3e-19
Identities = 46/73 (63%), Positives = 50/73 (68%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
++TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ +
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYID------- 53
Query: 500 RIYYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 54 ----GQLTGNLGE 62
>NP_001190872.1 small nuclear ribonucleoprotein F [Arabidopsis thaliana] AEE85740.1
small nuclear ribonucleoprotein F [Arabidopsis thaliana]
Length = 96
Score = 87.0 bits (214), Expect = 3e-19
Identities = 47/73 (64%), Positives = 49/73 (67%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
L TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ +
Sbjct: 9 LQTIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYID------- 61
Query: 500 RIYYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 62 ----GQLTGNLGE 70
>JAU27103.1 putative small nuclear ribonucleoprotein F [Noccaea caerulescens]
Length = 88
Score = 86.7 bits (213), Expect = 4e-19
Identities = 46/73 (63%), Positives = 50/73 (68%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
++TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ +
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYID------- 53
Query: 500 RIYYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 54 ----GQLTGNLGE 62
>XP_013595720.1 PREDICTED: probable small nuclear ribonucleoprotein F isoform X1
[Brassica oleracea var. oleracea]
Length = 88
Score = 86.7 bits (213), Expect = 4e-19
Identities = 46/73 (63%), Positives = 50/73 (68%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
++TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ +
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYID------- 53
Query: 500 RIYYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 54 ----GQLTGNLGE 62
>NP_194751.1 small nuclear ribonucleoprotein F [Arabidopsis thaliana]
XP_002867361.1 hypothetical protein ARALYDRAFT_913456
[Arabidopsis lyrata subsp. lyrata] XP_002885912.1
hypothetical protein ARALYDRAFT_899645 [Arabidopsis
lyrata subsp. lyrata] XP_006284846.1 hypothetical
protein CARUB_v10006132mg [Capsella rubella]
XP_010433013.1 PREDICTED: probable small nuclear
ribonucleoprotein F [Camelina sativa] XP_010447750.1
PREDICTED: probable small nuclear ribonucleoprotein F
[Camelina sativa] Q9SUM2.1 RecName: Full=Probable small
nuclear ribonucleoprotein F; Short=snRNP-F; AltName:
Full=Sm protein F; Short=Sm-F; Short=SmF CAB52466.1
snRNP Sm protein F-like [Arabidopsis thaliana]
CAB81015.1 snRNP Sm protein F-like [Arabidopsis
thaliana] AAM65157.1 snRNP Sm protein F-like
[Arabidopsis thaliana] AAP21190.1 At4g30220 [Arabidopsis
thaliana] BAE99740.1 snRNP Sm protein F - like
[Arabidopsis thaliana] EFH43620.1 hypothetical protein
ARALYDRAFT_913456 [Arabidopsis lyrata subsp. lyrata]
EFH62171.1 hypothetical protein ARALYDRAFT_899645
[Arabidopsis lyrata subsp. lyrata] AEE85739.1 small
nuclear ribonucleoprotein F [Arabidopsis thaliana]
EOA17744.1 hypothetical protein CARUB_v10006132mg
[Capsella rubella]
Length = 88
Score = 86.7 bits (213), Expect = 4e-19
Identities = 46/73 (63%), Positives = 50/73 (68%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
++TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ +
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYID------- 53
Query: 500 RIYYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 54 ----GQLTGNLGE 62
>XP_009137904.1 PREDICTED: probable small nuclear ribonucleoprotein F [Brassica
rapa] XP_009108996.1 PREDICTED: probable small nuclear
ribonucleoprotein F [Brassica rapa] XP_013622079.1
PREDICTED: probable small nuclear ribonucleoprotein F
[Brassica oleracea var. oleracea] XP_013595721.1
PREDICTED: probable small nuclear ribonucleoprotein F
isoform X2 [Brassica oleracea var. oleracea]
XP_013738269.1 PREDICTED: probable small nuclear
ribonucleoprotein F [Brassica napus] XP_013654890.1
PREDICTED: probable small nuclear ribonucleoprotein F
[Brassica napus] XP_013685892.1 PREDICTED: probable
small nuclear ribonucleoprotein F [Brassica napus]
XP_013685893.1 PREDICTED: probable small nuclear
ribonucleoprotein F [Brassica napus] XP_013706239.1
PREDICTED: probable small nuclear ribonucleoprotein F
[Brassica napus] XP_013720339.1 PREDICTED: probable
small nuclear ribonucleoprotein F [Brassica napus]
XP_018466465.1 PREDICTED: probable small nuclear
ribonucleoprotein F [Raphanus sativus] CDY39189.1
BnaA03g50010D [Brassica napus] CDX72224.1 BnaC07g42460D
[Brassica napus]
Length = 88
Score = 86.7 bits (213), Expect = 4e-19
Identities = 46/73 (63%), Positives = 50/73 (68%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
++TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ +
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYID------- 53
Query: 500 RIYYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 54 ----GQLTGNLGE 62
>XP_018449260.1 PREDICTED: probable small nuclear ribonucleoprotein F [Raphanus
sativus] KFK29578.1 small nuclear ribonucleoprotein f
[Arabis alpina]
Length = 88
Score = 86.7 bits (213), Expect = 4e-19
Identities = 46/73 (63%), Positives = 50/73 (68%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
++TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ +
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYID------- 53
Query: 500 RIYYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 54 ----GQLTGNLGE 62
>JAU33764.1 putative small nuclear ribonucleoprotein F, partial [Noccaea
caerulescens]
Length = 108
Score = 87.0 bits (214), Expect = 4e-19
Identities = 52/93 (55%), Positives = 55/93 (59%)
Frame = +2
Query: 260 RRSRFYLHRECRAG*GRGFWLSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSY 439
RRSR H A + TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SY
Sbjct: 1 RRSRSLAHLPLSAVCLQKSTTMTIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSY 60
Query: 440 MNLQAECCS*FFQFAAG*C*RIYYGQLTGNLGE 538
MNLQ + GQLTGNLGE
Sbjct: 61 MNLQLGNTEEYID-----------GQLTGNLGE 82
>CDY14182.1 BnaA08g13130D [Brassica napus]
Length = 88
Score = 86.3 bits (212), Expect = 5e-19
Identities = 46/73 (63%), Positives = 49/73 (67%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
+ TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ +
Sbjct: 1 MQTIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYID------- 53
Query: 500 RIYYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 54 ----GQLTGNLGE 62
>XP_002530746.1 PREDICTED: probable small nuclear ribonucleoprotein F [Ricinus
communis] EEF31652.1 small nuclear ribonucleoprotein f,
putative [Ricinus communis]
Length = 88
Score = 86.3 bits (212), Expect = 5e-19
Identities = 46/73 (63%), Positives = 49/73 (67%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
++TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ F
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEFID------- 53
Query: 500 RIYYGQLTGNLGE 538
GQ TGNLGE
Sbjct: 54 ----GQFTGNLGE 62
>XP_010438202.1 PREDICTED: probable small nuclear ribonucleoprotein F [Camelina
sativa]
Length = 88
Score = 85.9 bits (211), Expect = 7e-19
Identities = 47/73 (64%), Positives = 50/73 (68%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
++TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ G
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQ-----------LGNTE 49
Query: 500 RIYYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 50 ESIDGQLTGNLGE 62
>KJB53519.1 hypothetical protein B456_009G005500 [Gossypium raimondii]
KJB53520.1 hypothetical protein B456_009G005500
[Gossypium raimondii]
Length = 66
Score = 85.1 bits (209), Expect = 8e-19
Identities = 46/73 (63%), Positives = 49/73 (67%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
++TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ G
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQ-----------LGNAE 49
Query: 500 RIYYGQLTGNLGE 538
GQ TGNLGE
Sbjct: 50 EYVDGQFTGNLGE 62
>XP_013738270.1 PREDICTED: probable small nuclear ribonucleoprotein F [Brassica
napus]
Length = 88
Score = 85.5 bits (210), Expect = 1e-18
Identities = 45/73 (61%), Positives = 50/73 (68%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
++TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV++YMNLQ +
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDTYMNLQLGNTEEYID------- 53
Query: 500 RIYYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 54 ----GQLTGNLGE 62
>XP_006412732.1 hypothetical protein EUTSA_v10026681mg [Eutrema salsugineum]
ESQ54185.1 hypothetical protein EUTSA_v10026681mg
[Eutrema salsugineum]
Length = 88
Score = 85.5 bits (210), Expect = 1e-18
Identities = 45/73 (61%), Positives = 50/73 (68%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
++TIP NPKP LNN TGKTVIVKLKW MEYKG+LASV+SYMNLQ +
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGYLASVDSYMNLQLGNTEEYID------- 53
Query: 500 RIYYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 54 ----GQLTGNLGE 62
>XP_002325051.2 hypothetical protein POPTR_0018s09990g [Populus trichocarpa]
EEF03616.2 hypothetical protein POPTR_0018s09990g
[Populus trichocarpa]
Length = 66
Score = 84.7 bits (208), Expect = 1e-18
Identities = 44/73 (60%), Positives = 49/73 (67%)
Frame = +2
Query: 320 LSTIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C* 499
++T+P NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ +
Sbjct: 1 MATVPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYID------- 53
Query: 500 RIYYGQLTGNLGE 538
GQ TGNLGE
Sbjct: 54 ----GQFTGNLGE 62
>JAU66958.1 putative small nuclear ribonucleoprotein F, partial [Noccaea
caerulescens]
Length = 98
Score = 85.5 bits (210), Expect = 1e-18
Identities = 46/71 (64%), Positives = 48/71 (67%)
Frame = +2
Query: 326 TIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C*RI 505
TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ +
Sbjct: 13 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYID--------- 63
Query: 506 YYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 64 --GQLTGNLGE 72
>JAU85720.1 putative small nuclear ribonucleoprotein F, partial [Noccaea
caerulescens]
Length = 100
Score = 85.5 bits (210), Expect = 1e-18
Identities = 46/71 (64%), Positives = 48/71 (67%)
Frame = +2
Query: 326 TIPANPKPSLNNWTGKTVIVKLKWAMEYKGFLASVNSYMNLQAECCS*FFQFAAG*C*RI 505
TIP NPKP LNN TGKTVIVKLKW MEYKGFLASV+SYMNLQ +
Sbjct: 15 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYID--------- 65
Query: 506 YYGQLTGNLGE 538
GQLTGNLGE
Sbjct: 66 --GQLTGNLGE 74