BLASTX nr result
ID: Phellodendron21_contig00001579
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Phellodendron21_contig00001579
(3692 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YP_009333242.1 RdRp [Beihai charybdis crab virus 1] APG77582.1 R... 118 6e-23
YP_009337659.1 hypothetical protein [Hubei virga-like virus 21] ... 113 2e-21
CAA75053.1 putative RNA-dependent RNA polymerase, partial [Semli... 111 2e-21
NP_740668.1 nonstructural protein nsP4 [Semliki Forest virus] 110 3e-21
AAM64226.1 non-structural polyprotein [Semliki Forest virus] 112 5e-21
YP_008901140.1 non-structural polyprotein precursor nsP1234 [Beb... 112 5e-21
AFK94462.1 polymerase, partial [Blackberry yellow vein-associate... 107 8e-21
AFK94457.1 polymerase, partial [Blackberry yellow vein-associate... 107 8e-21
NP_463457.1 Nonstructural polyprotein [Semliki Forest virus] CAA... 110 1e-20
ABP58684.1 nonstructural polyprotein [Semliki Forest virus expre... 110 1e-20
ABA29028.1 polyprotein nsP1234 [Semliki Forest virus] 110 1e-20
ABA29024.1 polyprotein nsP1234 [Semliki Forest virus] 110 1e-20
ABA29026.1 polyprotein nsP1234 [Semliki Forest virus] 110 1e-20
ABA29031.1 polyprotein nsP1234 [Semliki Forest virus] 110 1e-20
ABA29025.1 polyprotein nsP1234 [Semliki Forest virus] 110 1e-20
ABA29023.1 polyprotein nsP1234 [Semliki Forest virus] 110 1e-20
P08411.2 RecName: Full=Non-structural polyprotein; AltName: Full... 110 1e-20
AKA67123.1 non-structural polyprotein [Semliki Forest virus] AKL... 110 1e-20
CAB62256.1 polyprotein nsP1234 [Semliki Forest virus] AKC01667.1... 110 1e-20
ABA29029.1 polyprotein nsP1234 [Semliki Forest virus] 110 1e-20
>YP_009333242.1 RdRp [Beihai charybdis crab virus 1] APG77582.1 RdRp [Beihai
charybdis crab virus 1]
Length = 1920
Score = 118 bits (295), Expect = 6e-23
Identities = 106/390 (27%), Positives = 177/390 (45%), Gaps = 10/390 (2%)
Frame = -3
Query: 1383 RLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQ---MWDNFLRYRCRADVH 1213
+L P P R L + KRN D +PQ+ N++ + NF++++
Sbjct: 1503 KLRTAQPPTRPRTQRQGLLCLQKRNCD-----VPQN-NVAMHPSTVIGNFIKFKEAYFHS 1556
Query: 1212 EL-LAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNMMMEYSLTEFLLQFKGK 1036
E+ L ++ HPI + N++ W T P K+ ++ K+ D ++Y + K +
Sbjct: 1557 EVDLNYFQAHPIKIDEKNILEWMTGAKPQKLARLGKITPVEDREWIKYQM-----MIKAE 1611
Query: 1035 VKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDADK 856
K L A + + Q I+H +I FWS++F +L R+NS L P I + +R N AD+
Sbjct: 1612 PKNKLELGATQEYFSLQNIVHNYPKITAFWSSIFKELFRRFNSCLKPQICVLIRKN-ADE 1670
Query: 855 RDHIRVHHPWGDPNLVY--VQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQ 682
+ W +PN Y +++D S+YDKSQ + +LGLS+ +E W
Sbjct: 1671 IS--QFFSTWLEPNSPYKKLEVDFSKYDKSQQDFCLATELYVMRKLGLSDNLIEAWKFFH 1728
Query: 681 TNNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYELGQ--GDDLYD 508
T + G+K Q K+G T GNT S + A E G GDD
Sbjct: 1729 TLSTGTDFKAGIKAKFLYQRKTGDSFTCLGNTIISMSALAACFDLSKLECGAFVGDDSLL 1788
Query: 507 VLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLPDPI 328
+ E + + D +FN+ K+I + YFC F+V + ++ L+PDP+
Sbjct: 1789 MFKELPYVADGERD-LRLMFNLESKVITE-----GAPYFCSSFLVSNGTR--FALVPDPL 1840
Query: 327 KAIESLSRPI--TQDEAKFEEMYQSFNDRI 244
K E L + I + + ++ + SF D++
Sbjct: 1841 KRCERLGKTIYPSDEFTDLKDRWISFADQM 1870
>YP_009337659.1 hypothetical protein [Hubei virga-like virus 21] APG77651.1
hypothetical protein [Hubei virga-like virus 21]
Length = 2444
Score = 113 bits (283), Expect = 2e-21
Identities = 117/515 (22%), Positives = 216/515 (41%), Gaps = 13/515 (2%)
Frame = -3
Query: 1593 QHSR-SLIDVGDFISVLNQEYSNCFPAVAAADMSADYDLAAHGEMNFTVNVPFLRMPLDN 1417
+H+R L +V + +L Q Y P ++ AD + D + + ++ ++ ++ LD
Sbjct: 1941 RHTRIRLNNVTPHVEILQQWYDTILPTISTADRTFDNHMIHNDPLSVSIAG---KVTLD- 1996
Query: 1416 IVGSERIVYQSRLNGPNRP---------NAPSESRNLLTGVVKRNADPNVIKLPQDANIS 1264
++ Y R RP S+ +LL + + +A P ++ +
Sbjct: 1997 ---LSKLKYDGRKFDNKRPVLRTGIGLERIRSQRESLLAYIKRNDAVPIPLEPVDPTYVV 2053
Query: 1263 RQMWDNFLRYRCRADVHELLAEYKTHPIAVAMPNLVAWATRVGPDK-VDKVVKLFEQSDN 1087
M + F Y + +L P+ + ++ WA + DK +D V D
Sbjct: 2054 NLMMEKFQGYFDPERLEGVLGV----PLTLNSESMTKWA--LAQDKSIDTTV------DQ 2101
Query: 1086 MMMEYSLTEFLLQFKGKVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNS 907
+ E L+ + K + KP L+ A+ + QTI + +IN F + D+ R
Sbjct: 2102 YLHEQDLSRYEFMIKPRPKPDLTKLANSTYAALQTIAYQPGKINQFLCPLIKDMKERILF 2161
Query: 906 ILSPHIHIGVRGNDADKRDHIRVHHPWG-DPNLVYVQLDMSEYDKSQDIRARYFFDIMHT 730
L I + + P G DPN + + D+S++DKSQ+ A +
Sbjct: 2162 CLRDRFKIFSDVTIEEFAAKVTDLFPDGFDPNSLIYEFDISKFDKSQNEIALMLDAAIMR 2221
Query: 729 ELGLSEEYVERWSEGQTNNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMP 550
G++EE V+ W G T G+K V Q KSG T GNT + + A ++P
Sbjct: 2222 MFGINEEIVQLWISGHTATTLVDYKGGLKAEVTYQRKSGDPFTFLGNTLFLMSCLAVIVP 2281
Query: 549 RVVYELGQ-GDDLYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVV 373
E G D ++ ++D + + VFN+ KL ++ YFC KF++
Sbjct: 2282 LEQIEFAAFGGDDQIIVTKTDIGLSSV-QYLENVFNLEAKLFV-----RKYPYFCSKFLL 2335
Query: 372 YDESKKEVFLLPDPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSWKSDFPTQVFDSMVA 193
+ + + LPD +K + L R +++ EE S ND + ++ VF+
Sbjct: 2336 H--AGDRWYFLPDLLKLVTKLGRHDLRNDTHIEEYRVSLNDLLQVYRDKTVFPVFNQAFN 2393
Query: 192 KWYEAPELRASYTVDALISAGKNKSVFRTLWEESP 88
+ Y +P + +Y ++ +++ + + FR+L+ P
Sbjct: 2394 ERYPSPIVDHTYIIEVVLALCERELSFRSLFYSRP 2428
>CAA75053.1 putative RNA-dependent RNA polymerase, partial [Semliki Forest virus]
Length = 614
Score = 111 bits (277), Expect = 2e-21
Identities = 103/454 (22%), Positives = 197/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 122 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSESCLDRATFCPAKL-RCYPKHHAYHQ 180
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 181 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 238
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF ++ N+ + E + F + K
Sbjct: 239 E---EYAKQPIRITTENITTYVTKL---KGPKAAALFAKTHNLVPLQEVPMDRFTVDMKR 292
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 293 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 352
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 353 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 409
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 410 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 469
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 470 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 523
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 524 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 557
>NP_740668.1 nonstructural protein nsP4 [Semliki Forest virus]
Length = 614
Score = 110 bits (276), Expect = 3e-21
Identities = 103/454 (22%), Positives = 197/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 122 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKL-RCYPKHHAYHQ 180
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 181 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 238
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF ++ N+ + E + F + K
Sbjct: 239 E---EYAKQPIRITTENITTYVTKL---KGPKAAALFAKTHNLVPLQEVPMDRFTVDMKR 292
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 293 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 352
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 353 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 409
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 410 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 469
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 470 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 523
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 524 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 557
>AAM64226.1 non-structural polyprotein [Semliki Forest virus]
Length = 2431
Score = 112 bits (279), Expect = 5e-21
Identities = 103/454 (22%), Positives = 198/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 1939 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKL-RCYPKHHAYHQ 1997
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 1998 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 2055
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF+++ N+ + E + F + K
Sbjct: 2056 E---EYAKQPIRITTENITTYVTKL---KGPKAAALFDKTHNLVPLQEVPMDRFTVDMKR 2109
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 2110 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 2169
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 2170 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 2226
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 2227 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 2286
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 2287 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 2340
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 2341 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 2374
>YP_008901140.1 non-structural polyprotein precursor nsP1234 [Bebaru virus]
Length = 2456
Score = 112 bits (279), Expect = 5e-21
Identities = 102/421 (24%), Positives = 187/421 (44%), Gaps = 8/421 (1%)
Frame = -3
Query: 1341 RNLLTGVVKRNADPNVIKLPQDANISRQMWDNFLRYRCRADVHELLAEYKTHPIAVAMPN 1162
+N+L+ KRN NV ++ + + ++ N ++ A +E E+ HPI V N
Sbjct: 2041 QNVLSAATKRNC--NVTQMRELPTLDSAVF-NVECFKAFACNNEYWKEFSEHPIRVTTEN 2097
Query: 1161 LVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKGKVKPTLSANAHRAFVKF 988
++ + TR+ K K LF ++ ++ + E + +F++ K VK T K
Sbjct: 2098 IMTYVTRL---KGPKAAALFAKTHSLVPLQEVPMDKFIMDMKRDVKVTPGTKHTEERPKV 2154
Query: 987 QTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDADKRDHIRVHHPWGDPNLV 808
Q I + + +L R N++L P+IH + D I H GD L
Sbjct: 2155 QVIQAAEPLATAYLCGIHRELVRRLNAVLLPNIHTLFDMSAEDFDAIIAEHFHPGDRVL- 2213
Query: 807 YVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQTNNVARSMALGMKLIVPL 628
+ D++ +DKSQD ++ +LG+ + +E + + G +
Sbjct: 2214 --ETDIASFDKSQDDSLALTGLMILEDLGVDQPLLELIEAAFGEITSTHLPTGTRFKFGA 2271
Query: 627 QMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDDLYDVLAESDFEPNMMAD 466
MKSG+ TL+ NT + IA+ ++ R + E +G + ++ V ++ +MA+
Sbjct: 2272 MMKSGMFLTLFVNTMLNIVIASRVLERRLTESACAAFIGDDNIIHGVTSDP-----LMAE 2326
Query: 465 KAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLPDPIKAIESLSRPITQDE 286
+ A+ NM +K+I M R YFCG F++YD + + DP+K + L +P+ D+
Sbjct: 2327 RCASWMNMEVKII-DAEMCVRPPYFCGGFILYDSVTQSACRVADPLKRLFKLGKPLPADD 2385
Query: 285 AKFEEMYQSFNDRIVSWKSDFPTQVFDSMVAKWYEAPELRASYTVDALISAGKNKSVFRT 106
+ E+ ++ D + W ++ V YE V A+ + +N F+T
Sbjct: 2386 VQDEDRRRALADEVKRWSRVGLVAELETAVCSRYEVQ--GCDNIVSAMATFSQNIRNFKT 2443
Query: 105 L 103
L
Sbjct: 2444 L 2444
>AFK94462.1 polymerase, partial [Blackberry yellow vein-associated virus]
Length = 399
Score = 107 bits (266), Expect = 8e-21
Identities = 93/329 (28%), Positives = 156/329 (47%), Gaps = 6/329 (1%)
Frame = -3
Query: 1122 DKVVKLFEQSDNMMMEYSLTEFLLQFKGKVKPTLSANAHRAFVKFQTIMHYTTEINMFWS 943
+K+ KL + +M L KG++KP + +++ + I++Y INMF+S
Sbjct: 82 EKIRKLKRSFSHSLMVSQFESMKLMIKGEMKPKMDTSSYTTYNPPANIIYYEHAINMFYS 141
Query: 942 AMFSDLTIRYNSILSPHIHIGVRGNDADKRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDI 763
MF ++ R LS I + N IR P V++D S++DKSQ +
Sbjct: 142 PMFLEVFDRITYCLSNKIILYSGMNLETLGSLIRSKLPLPLDEYKTVEIDFSKFDKSQGV 201
Query: 762 RARYFFDIMHTELGLSEEYVERWSEGQTNNVARSMALGMKLIVPLQMKSGIGTTLWGNTA 583
+ + +I++ SEE E + ARS + G+ L + Q ++G T NT
Sbjct: 202 LFKVYEEIVYKFFKFSEELYENIKMTEYFCRARSRS-GVSLELGAQRRTGSPNTWLSNTL 260
Query: 582 YSQAI--AAWLMPRVVYELGQGDDLYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMP 409
+ I + + + + L GDD +L++ D PN +A++ F M K I +V
Sbjct: 261 VTLGIILSTYKIDDIDLLLVSGDDSL-ILSKEDL-PN-LANQINQDFGMEAKFIVNSV-- 315
Query: 408 KRTGYFCGKFVVYDESKKEVFLLPDPIKAIESLSRPITQD----EAKFEEMYQSFNDRIV 241
YFC KF++ E + E+ ++PDP++ E LS P+ + E +E Y SF D +V
Sbjct: 316 ---PYFCSKFII--EDRGEIKVVPDPVRFFEKLSVPVRLEDFLSETLLKEKYTSFKDLMV 370
Query: 240 SWKSDFPTQVFDSMVAKWYEAPELRASYT 154
S+ SD + D + Y PE+ +SY+
Sbjct: 371 SFDSDTVCVLVDRSICIRYNIPEM-SSYS 398
>AFK94457.1 polymerase, partial [Blackberry yellow vein-associated virus]
Length = 399
Score = 107 bits (266), Expect = 8e-21
Identities = 91/329 (27%), Positives = 155/329 (47%), Gaps = 6/329 (1%)
Frame = -3
Query: 1122 DKVVKLFEQSDNMMMEYSLTEFLLQFKGKVKPTLSANAHRAFVKFQTIMHYTTEINMFWS 943
+K+ KL + +M L KG++KP + +++ + I++Y INMF+S
Sbjct: 82 EKIRKLKRSFSHSLMVSQFESMKLMIKGEMKPKMDTSSYTTYNPPANIIYYEHAINMFYS 141
Query: 942 AMFSDLTIRYNSILSPHIHIGVRGNDADKRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDI 763
MF ++ R LS I + N IR P V++D S++DKSQ +
Sbjct: 142 PMFLEVFDRITYCLSNKIILYSGMNLETLGSLIRSKLPLPLDEYKTVEIDFSKFDKSQGV 201
Query: 762 RARYFFDIMHTELGLSEEYVERWSEGQTNNVARSMALGMKLIVPLQMKSGIGTTLWGNTA 583
+ + +I++ SEE E + A+S + G+ L + Q ++G T NT
Sbjct: 202 LFKVYEEIVYKFFKFSEELYENIKMTEYFCRAKSRS-GVSLELGAQRRTGSPNTWLSNTL 260
Query: 582 YSQAI--AAWLMPRVVYELGQGDDLYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMP 409
+ I + + M + L GDD ++ + PN +A++ F M K I +V
Sbjct: 261 VTLGIILSTYRMDDIDLLLVSGDD--SLIFSKEDLPN-LANQINQDFGMEAKFIVNSV-- 315
Query: 408 KRTGYFCGKFVVYDESKKEVFLLPDPIKAIESLSRPITQD----EAKFEEMYQSFNDRIV 241
YFC KF++ E + E+ ++PDP++ E LS P+ + E +E Y SF D +V
Sbjct: 316 ---PYFCSKFII--EDRGEIKVVPDPVRFFEKLSVPVRLEDFLSETLLKEKYTSFKDLMV 370
Query: 240 SWKSDFPTQVFDSMVAKWYEAPELRASYT 154
S+ SD + D ++ Y PE+ +SY+
Sbjct: 371 SFDSDTVCVLVDRLICIRYNIPEM-SSYS 398
>NP_463457.1 Nonstructural polyprotein [Semliki Forest virus] CAA27741.1
polyprotein of non-structural proteins [Semliki Forest
virus]
Length = 2431
Score = 110 bits (276), Expect = 1e-20
Identities = 103/454 (22%), Positives = 197/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 1939 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKL-RCYPKHHAYHQ 1997
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 1998 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 2055
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF ++ N+ + E + F + K
Sbjct: 2056 E---EYAKQPIRITTENITTYVTKL---KGPKAAALFAKTHNLVPLQEVPMDRFTVDMKR 2109
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 2110 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 2169
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 2170 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 2226
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 2227 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 2286
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 2287 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 2340
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 2341 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 2374
>ABP58684.1 nonstructural polyprotein [Semliki Forest virus expression vector
pSFV4(PD)]
Length = 2432
Score = 110 bits (276), Expect = 1e-20
Identities = 103/454 (22%), Positives = 197/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 1940 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKL-RCYPKHHAYHQ 1998
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 1999 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 2056
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF ++ N+ + E + F + K
Sbjct: 2057 E---EYAKQPIRITTENITTYVTKL---KGPKAAALFAKTHNLVPLQEVPMDRFTVDMKR 2110
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 2111 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 2170
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 2171 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 2227
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 2228 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 2287
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 2288 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 2341
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 2342 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 2375
>ABA29028.1 polyprotein nsP1234 [Semliki Forest virus]
Length = 2432
Score = 110 bits (276), Expect = 1e-20
Identities = 103/454 (22%), Positives = 197/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 1940 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKL-RCYPKHHAYHQ 1998
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 1999 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 2056
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF ++ N+ + E + F + K
Sbjct: 2057 E---EYAKQPIRITTENITTYVTKL---KGPKAAALFAKTHNLVPLQEVPMDRFTVDMKR 2110
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 2111 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 2170
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 2171 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 2227
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 2228 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 2287
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 2288 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 2341
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 2342 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 2375
>ABA29024.1 polyprotein nsP1234 [Semliki Forest virus]
Length = 2432
Score = 110 bits (276), Expect = 1e-20
Identities = 103/454 (22%), Positives = 197/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 1940 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKL-RCYPKHHAYHQ 1998
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 1999 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 2056
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF ++ N+ + E + F + K
Sbjct: 2057 E---EYAKQPIRITTENITTYVTKL---KGPKAAALFAKTHNLVPLQEVPMDRFTVDMKR 2110
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 2111 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 2170
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 2171 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 2227
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 2228 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 2287
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 2288 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 2341
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 2342 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 2375
>ABA29026.1 polyprotein nsP1234 [Semliki Forest virus]
Length = 2432
Score = 110 bits (276), Expect = 1e-20
Identities = 103/454 (22%), Positives = 197/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 1940 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKL-RCYPKHHAYHQ 1998
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 1999 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 2056
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF ++ N+ + E + F + K
Sbjct: 2057 E---EYAKQPIRITTENITTYVTKL---KGPKAAALFAKTHNLVPLQEVPMDRFTVDMKR 2110
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 2111 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 2170
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 2171 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 2227
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 2228 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 2287
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 2288 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 2341
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 2342 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 2375
>ABA29031.1 polyprotein nsP1234 [Semliki Forest virus]
Length = 2432
Score = 110 bits (276), Expect = 1e-20
Identities = 103/454 (22%), Positives = 197/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 1940 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKL-RCYPKHHAYHQ 1998
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 1999 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 2056
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF ++ N+ + E + F + K
Sbjct: 2057 E---EYAKQPIRITTENITTYVTKL---KGPKAAALFAKTHNLVPLQEVPMDRFTVDMKR 2110
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 2111 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 2170
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 2171 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 2227
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 2228 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 2287
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 2288 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 2341
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 2342 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 2375
>ABA29025.1 polyprotein nsP1234 [Semliki Forest virus]
Length = 2432
Score = 110 bits (276), Expect = 1e-20
Identities = 103/454 (22%), Positives = 197/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 1940 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKL-RCYPKHHAYHQ 1998
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 1999 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 2056
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF ++ N+ + E + F + K
Sbjct: 2057 E---EYAKQPIRITTENITTYVTKL---KGPKAAALFAKTHNLVPLQEVPMDRFTVDMKR 2110
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 2111 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 2170
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 2171 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 2227
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 2228 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 2287
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 2288 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 2341
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 2342 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 2375
>ABA29023.1 polyprotein nsP1234 [Semliki Forest virus]
Length = 2432
Score = 110 bits (276), Expect = 1e-20
Identities = 103/454 (22%), Positives = 197/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 1940 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKL-RCYPKHHAYHQ 1998
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 1999 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 2056
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF ++ N+ + E + F + K
Sbjct: 2057 E---EYAKQPIRITTENITTYVTKL---KGPKAAALFAKTHNLVPLQEVPMDRFTVDMKR 2110
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 2111 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 2170
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 2171 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 2227
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 2228 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 2287
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 2288 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 2341
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 2342 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 2375
>P08411.2 RecName: Full=Non-structural polyprotein; AltName: Full=Polyprotein
nsP1234; Short=P1234; Contains: RecName: Full=P123;
Contains: RecName: Full=mRNA-capping enzyme nsP1;
AltName: Full=Non-structural protein 1; Contains:
RecName: Full=Protease nsP2; AltName: Full=Non-structural
protein 2; Short=nsP2; Contains: RecName:
Full=Non-structural protein 3; Short=nsP3; Contains:
RecName: Full=RNA-directed RNA polymerase nsP4; AltName:
Full=Non-structural protein 4; Short=nsP4 ABA29032.1
polyprotein nsP1234 [Semliki Forest virus]
Length = 2432
Score = 110 bits (276), Expect = 1e-20
Identities = 103/454 (22%), Positives = 197/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 1940 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKL-RCYPKHHAYHQ 1998
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 1999 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 2056
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF ++ N+ + E + F + K
Sbjct: 2057 E---EYAKQPIRITTENITTYVTKL---KGPKAAALFAKTHNLVPLQEVPMDRFTVDMKR 2110
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 2111 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 2170
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 2171 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 2227
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 2228 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 2287
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 2288 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 2341
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 2342 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 2375
>AKA67123.1 non-structural polyprotein [Semliki Forest virus] AKL61064.1
non-structural polyprotein [Semliki Forest virus]
Length = 2432
Score = 110 bits (276), Expect = 1e-20
Identities = 103/454 (22%), Positives = 197/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 1940 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKL-RCYPKHHAYHQ 1998
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 1999 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 2056
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF ++ N+ + E + F + K
Sbjct: 2057 E---EYAKQPIRITTENITTYVTKL---KGPKAAALFAKTHNLVPLQEVPMDRFTVDMKR 2110
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 2111 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 2170
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 2171 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 2227
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 2228 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 2287
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 2288 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 2341
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 2342 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 2375
>CAB62256.1 polyprotein nsP1234 [Semliki Forest virus] AKC01667.1 nonstructural
polyprotein [Semliki Forest virus 4]
Length = 2432
Score = 110 bits (276), Expect = 1e-20
Identities = 103/454 (22%), Positives = 197/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 1940 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKL-RCYPKHHAYHQ 1998
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 1999 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 2056
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF ++ N+ + E + F + K
Sbjct: 2057 E---EYAKQPIRITTENITTYVTKL---KGPKAAALFAKTHNLVPLQEVPMDRFTVDMKR 2110
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 2111 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 2170
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 2171 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 2227
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 2228 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 2287
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 2288 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 2341
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 2342 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 2375
>ABA29029.1 polyprotein nsP1234 [Semliki Forest virus]
Length = 2432
Score = 110 bits (275), Expect = 1e-20
Identities = 103/454 (22%), Positives = 197/454 (43%), Gaps = 13/454 (2%)
Frame = -3
Query: 1557 ISVLNQEYSNCFPAVAAADMSADYDL---AAHGEMNFTVNVPFLRMPLDNIVGSERIVYQ 1387
I+ N+ S +P VA+ ++ +YD G + F L +Q
Sbjct: 1940 IAACNEYLSRNYPTVASYQITDEYDAYLDMVDGSDSCLDRATFCPAKL-RCYPKHHAYHQ 1998
Query: 1386 SRLNGPNRPNAPSESRNLLTGVVKRNADPNVIKLPQDANISRQMW--DNFLRYRCRADVH 1213
+ + +N+L KRN NV ++ + + ++ + F RY C +
Sbjct: 1999 PTVRSAVPSPFQNTLQNVLAAATKRNC--NVTQMRELPTMDSAVFNVECFKRYACSGEYW 2056
Query: 1212 ELLAEYKTHPIAVAMPNLVAWATRVGPDKVDKVVKLFEQSDNM--MMEYSLTEFLLQFKG 1039
E EY PI + N+ + T++ K K LF ++ N+ + E + F + K
Sbjct: 2057 E---EYVKQPIRITTENITTYVTKL---KGPKAAALFAKTHNLVPLQEVPMDRFTVDMKR 2110
Query: 1038 KVKPTLSANAHRAFVKFQTIMHYTTEINMFWSAMFSDLTIRYNSILSPHIHIGVRGNDAD 859
VK T K Q I + + +L R N++L P++H + D
Sbjct: 2111 DVKVTPGTKHTEERPKVQVIQAAEPLATAYLCGIHRELVRRLNAVLRPNVHTLFDMSAED 2170
Query: 858 KRDHIRVHHPWGDPNLVYVQLDMSEYDKSQDIRARYFFDIMHTELGLSEEYVERWSEGQT 679
I H GDP L + D++ +DKSQD ++ +LG+ + ++
Sbjct: 2171 FDAIIASHFHPGDPVL---ETDIASFDKSQDDSLALTGLMILEDLGVDQYLLDLIEAAFG 2227
Query: 678 NNVARSMALGMKLIVPLQMKSGIGTTLWGNTAYSQAIAAWLMPRVVYE------LGQGDD 517
+ + G + MKSG+ TL+ NT + IA+ ++ + + + +G +
Sbjct: 2228 EISSCHLPTGTRFKFGAMMKSGMFLTLFINTVLNITIASRVLEQRLTDSACAAFIGDDNI 2287
Query: 516 LYDVLAESDFEPNMMADKAAAVFNMPLKLIAQTVMPKRTGYFCGKFVVYDESKKEVFLLP 337
++ V+++ +MA++ A+ NM +K+I VM ++ YFCG F+V+D + +
Sbjct: 2288 VHGVISDK-----LMAERCASWVNMEVKII-DAVMGEKPPYFCGGFIVFDSVTQTACRVS 2341
Query: 336 DPIKAIESLSRPITQDEAKFEEMYQSFNDRIVSW 235
DP+K + L +P+T ++ + E+ ++ +D + W
Sbjct: 2342 DPLKRLFKLGKPLTAEDKQDEDRRRALSDEVSKW 2375