BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Phellodendron21_contig00001550
         (1591 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KDO66627.1 hypothetical protein CISIN_1g015442mg [Citrus sinensis]    553   0.0  
XP_006424899.1 hypothetical protein CICLE_v10028561mg [Citrus cl...   551   0.0  
KDO66626.1 hypothetical protein CISIN_1g015442mg [Citrus sinensis]    501   e-173
KDO66628.1 hypothetical protein CISIN_1g015442mg [Citrus sinensis]    473   e-162
XP_007016334.2 PREDICTED: transcription initiation factor IIA la...   474   e-162
EOY33953.1 Transcription initiation factor IIA subunit 1 [Theobr...   474   e-162
OMO61981.1 Transcription factor IIA, alpha/beta subunit [Corchor...   464   e-158
XP_017983002.1 PREDICTED: transcription initiation factor IIA la...   461   e-156
XP_012446718.1 PREDICTED: transcription initiation factor IIA la...   454   e-154
GAV78305.1 TFIIA domain-containing protein [Cephalotus follicula...   451   e-153
XP_016750614.1 PREDICTED: transcription initiation factor IIA la...   451   e-152
XP_017647079.1 PREDICTED: transcription initiation factor IIA la...   449   e-152
XP_017612850.1 PREDICTED: transcription initiation factor IIA la...   449   e-152
XP_012066966.1 PREDICTED: transcription initiation factor IIA la...   449   e-152
OAY61177.1 hypothetical protein MANES_01G169400 [Manihot esculenta]   448   e-151
XP_012475136.1 PREDICTED: transcription initiation factor IIA la...   447   e-151
XP_016751701.1 PREDICTED: transcription initiation factor IIA la...   446   e-151
XP_016745211.1 PREDICTED: transcription initiation factor IIA la...   445   e-150
XP_011032247.1 PREDICTED: transcription initiation factor IIA su...   439   e-148
XP_018820031.1 PREDICTED: transcription initiation factor IIA la...   434   e-146

>KDO66627.1 hypothetical protein CISIN_1g015442mg [Citrus sinensis]
          Length = 406

 Score =  553 bits (1426), Expect = 0.0
 Identities = 297/409 (72%), Positives = 308/409 (75%), Gaps = 13/409 (3%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVVCGPIDRSS 1322
            MATS T MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV+   IDR+S
Sbjct: 1    MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57

Query: 1321 VPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGSTP 1142
             PKQPAPGGPITPVHDLN+             E                PGSTPLPGSTP
Sbjct: 58   APKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 117

Query: 1141 LQGS------ADNSMYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXX 980
            L GS      ADNS YNIPTGSSDYPTPASDSGGNTE K GNGR                
Sbjct: 118  LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177

Query: 979  XPLSVDVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDG 800
             PLSVDVNVAYVEGRDEADRGTSHQPL QDFFTMSAGKRKREDFP+QY NGGYNIPQQDG
Sbjct: 178  PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237

Query: 799  AGDATSEIFELEVSQ-------GTSANRQILAHLASSLVKIPQLDGPIPDSYDDMLSTPN 641
            AGDA SEIFELEVS+        T+ANR+I A+LASS VKIPQLDGPIPD YDD+LSTPN
Sbjct: 238  AGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPN 297

Query: 640  IYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAAXXXXXXXXXXXXXXXXXXXXXXX 461
            IYNYQGVVNEDYNIVNTPAPND+QASTPAVVTQNDAA                       
Sbjct: 298  IYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGE 357

Query: 460  XXNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
              NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF+F
Sbjct: 358  ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406


>XP_006424899.1 hypothetical protein CICLE_v10028561mg [Citrus clementina]
            XP_006488381.1 PREDICTED: transcription initiation factor
            IIA subunit 1 [Citrus sinensis] ESR38139.1 hypothetical
            protein CICLE_v10028561mg [Citrus clementina]
          Length = 406

 Score =  551 bits (1421), Expect = 0.0
 Identities = 296/409 (72%), Positives = 307/409 (75%), Gaps = 13/409 (3%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVVCGPIDRSS 1322
            MATS T MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV+   IDR+S
Sbjct: 1    MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57

Query: 1321 VPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGSTP 1142
             PKQPAPGGPITPVHDLN+             E                PGSTPLPGSTP
Sbjct: 58   APKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 117

Query: 1141 LQGS------ADNSMYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXX 980
            L GS      ADNS YNIPTGSSDYPTPASDSGGNTE K GNGR                
Sbjct: 118  LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177

Query: 979  XPLSVDVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDG 800
             PLSVDVNVAYVEGRDEADRGTSHQPL QDFFTMSAGKRKREDFP+QY NGGYNIPQQDG
Sbjct: 178  PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237

Query: 799  AGDATSEIFELEVSQ-------GTSANRQILAHLASSLVKIPQLDGPIPDSYDDMLSTPN 641
            AGDA  EIFELEVS+        T+ANR+I A+LASS VKIPQLDGPIPD YDD+LSTPN
Sbjct: 238  AGDAMPEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPN 297

Query: 640  IYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAAXXXXXXXXXXXXXXXXXXXXXXX 461
            IYNYQGVVNEDYNIVNTPAPND+QASTPAVVTQNDAA                       
Sbjct: 298  IYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGE 357

Query: 460  XXNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
              NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF+F
Sbjct: 358  ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406


>KDO66626.1 hypothetical protein CISIN_1g015442mg [Citrus sinensis]
          Length = 386

 Score =  501 bits (1291), Expect = e-173
 Identities = 277/409 (67%), Positives = 288/409 (70%), Gaps = 13/409 (3%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVVCGPIDRSS 1322
            MATS T MVYIRVIEDVISK                    IWEMKMIQAGV+   IDR+S
Sbjct: 1    MATSATGMVYIRVIEDVISK--------------------IWEMKMIQAGVI---IDRTS 37

Query: 1321 VPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGSTP 1142
             PKQPAPGGPITPVHDLN+             E                PGSTPLPGSTP
Sbjct: 38   APKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 97

Query: 1141 LQGS------ADNSMYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXX 980
            L GS      ADNS YNIPTGSSDYPTPASDSGGNTE K GNGR                
Sbjct: 98   LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 157

Query: 979  XPLSVDVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDG 800
             PLSVDVNVAYVEGRDEADRGTSHQPL QDFFTMSAGKRKREDFP+QY NGGYNIPQQDG
Sbjct: 158  PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 217

Query: 799  AGDATSEIFELEVSQ-------GTSANRQILAHLASSLVKIPQLDGPIPDSYDDMLSTPN 641
            AGDA SEIFELEVS+        T+ANR+I A+LASS VKIPQLDGPIPD YDD+LSTPN
Sbjct: 218  AGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPN 277

Query: 640  IYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAAXXXXXXXXXXXXXXXXXXXXXXX 461
            IYNYQGVVNEDYNIVNTPAPND+QASTPAVVTQNDAA                       
Sbjct: 278  IYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGE 337

Query: 460  XXNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
              NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF+F
Sbjct: 338  ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386


>KDO66628.1 hypothetical protein CISIN_1g015442mg [Citrus sinensis]
          Length = 363

 Score =  473 bits (1218), Expect = e-162
 Identities = 256/366 (69%), Positives = 267/366 (72%), Gaps = 13/366 (3%)
 Frame = -1

Query: 1372 MKMIQAGVVCGPIDRSSVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXX 1193
            MKMIQAGV+   IDR+S PKQPAPGGPITPVHDLN+             E          
Sbjct: 1    MKMIQAGVI---IDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQT 57

Query: 1192 XXXXXXPGSTPLPGSTPLQGS------ADNSMYNIPTGSSDYPTPASDSGGNTETKGGNG 1031
                  PGSTPLPGSTPL GS      ADNS YNIPTGSSDYPTPASDSGGNTE K GNG
Sbjct: 58   PIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNG 117

Query: 1030 RXXXXXXXXXXXXXXXXXPLSVDVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKRED 851
            R                 PLSVDVNVAYVEGRDEADRGTSHQPL QDFFTMSAGKRKRED
Sbjct: 118  RPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKRED 177

Query: 850  FPSQYQNGGYNIPQQDGAGDATSEIFELEVSQ-------GTSANRQILAHLASSLVKIPQ 692
            FP+QY NGGYNIPQQDGAGDA SEIFELEVS+        T+ANR+I A+LASS VKIPQ
Sbjct: 178  FPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQ 237

Query: 691  LDGPIPDSYDDMLSTPNIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAAXXXXXX 512
            LDGPIPD YDD+LSTPNIYNYQGVVNEDYNIVNTPAPND+QASTPAVVTQNDAA      
Sbjct: 238  LDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE 297

Query: 511  XXXXXXXXXXXXXXXXXXXNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 332
                               NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA
Sbjct: 298  PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 357

Query: 331  TGEFEF 314
            TGEF+F
Sbjct: 358  TGEFDF 363


>XP_007016334.2 PREDICTED: transcription initiation factor IIA large subunit isoform
            X2 [Theobroma cacao]
          Length = 393

 Score =  474 bits (1221), Expect = e-162
 Identities = 260/408 (63%), Positives = 281/408 (68%), Gaps = 12/408 (2%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDRS 1325
            MA+S TS VYI VIEDVI+KVRDEF+NNG PGE+VLNELQGIWEMKM+QAGVVCGPI+RS
Sbjct: 1    MASSTTSAVYIHVIEDVINKVRDEFINNGGPGETVLNELQGIWEMKMMQAGVVCGPIERS 60

Query: 1324 SVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1145
            S  KQP PGGPITPVHDLN+             +                   TP+P  T
Sbjct: 61   SGQKQPTPGGPITPVHDLNVPYEGPEEYETPTADMLFPPTPL----------QTPVP--T 108

Query: 1144 PLQGSADNSMYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXXXPLSV 965
            PL GSAD SMYNIPTGSSDYPTP +D GGNT+ KG                     PLSV
Sbjct: 109  PLPGSADGSMYNIPTGSSDYPTPVNDGGGNTDAKGAR---PSPYMQSPSPWPNQRTPLSV 165

Query: 964  DVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDGAGDAT 785
            DVNVAYVEGRDE DRG SHQPL QDFF MS+GKRKREDF +QY NGG  IPQQDGAGDA 
Sbjct: 166  DVNVAYVEGRDEVDRGPSHQPLTQDFFMMSSGKRKREDFTTQYHNGGGYIPQQDGAGDAI 225

Query: 784  SEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSYDDMLSTPNIY 635
             E+ + E S+G          T+A  +ILAHLA S  KIPQLDGPIPD YDDMLSTPNIY
Sbjct: 226  YEVAKAEGSKGSDFLDRRDSTTTAKSEILAHLARSSSKIPQLDGPIPDPYDDMLSTPNIY 285

Query: 634  NYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAA-XXXXXXXXXXXXXXXXXXXXXXXX 458
            NYQGVVNEDYN+VNTPAPNDLQA+TPA V QND                           
Sbjct: 286  NYQGVVNEDYNVVNTPAPNDLQAATPAPVAQNDTGDDDDDEPLNEDDDDDELDDVDQGEE 345

Query: 457  XNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
             NTQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 346  LNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 393


>EOY33953.1 Transcription initiation factor IIA subunit 1 [Theobroma cacao]
          Length = 393

 Score =  474 bits (1221), Expect = e-162
 Identities = 260/408 (63%), Positives = 281/408 (68%), Gaps = 12/408 (2%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDRS 1325
            MA+S TS VYI VIEDVI+KVRDEF+NNG PGE+VLNELQGIWEMKM+QAGVVCGPI+RS
Sbjct: 1    MASSTTSAVYIHVIEDVINKVRDEFINNGGPGETVLNELQGIWEMKMMQAGVVCGPIERS 60

Query: 1324 SVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1145
            S  KQP PGGPITPVHDLN+             +                   TP+P  T
Sbjct: 61   SGQKQPTPGGPITPVHDLNVPYEGPEEYETPTADMLFPPTPL----------QTPVP--T 108

Query: 1144 PLQGSADNSMYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXXXPLSV 965
            PL GSAD SMYNIPTGSSDYPTP +D GGNT+ KG                     PLSV
Sbjct: 109  PLPGSADGSMYNIPTGSSDYPTPVTDGGGNTDAKGAR---PSPYMQSPSPWPNQRTPLSV 165

Query: 964  DVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDGAGDAT 785
            DVNVAYVEGRDE DRG SHQPL QDFF MS+GKRKREDF +QY NGG  IPQQDGAGDA 
Sbjct: 166  DVNVAYVEGRDEVDRGPSHQPLTQDFFMMSSGKRKREDFTTQYHNGGGYIPQQDGAGDAI 225

Query: 784  SEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSYDDMLSTPNIY 635
             E+ + E S+G          T+A  +ILAHLA S  KIPQLDGPIPD YDDMLSTPNIY
Sbjct: 226  YEVAKAEGSKGSDFLDRRDSTTTAKSEILAHLARSSSKIPQLDGPIPDPYDDMLSTPNIY 285

Query: 634  NYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAA-XXXXXXXXXXXXXXXXXXXXXXXX 458
            NYQGVVNEDYN+VNTPAPNDLQA+TPA V QND                           
Sbjct: 286  NYQGVVNEDYNVVNTPAPNDLQAATPAPVAQNDTGDDDDDEPLNEDDDDDELDDVDQGEE 345

Query: 457  XNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
             NTQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 346  LNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 393


>OMO61981.1 Transcription factor IIA, alpha/beta subunit [Corchorus capsularis]
          Length = 392

 Score =  464 bits (1194), Expect = e-158
 Identities = 258/410 (62%), Positives = 279/410 (68%), Gaps = 14/410 (3%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDRS 1325
            MA+S TS VYI VIEDVISKVRDEF+NNG PGE+VLNELQGIWEMKM++AGV+CGPIDRS
Sbjct: 1    MASSTTSAVYIHVIEDVISKVRDEFINNGGPGEAVLNELQGIWEMKMMRAGVICGPIDRS 60

Query: 1324 SVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPL--PG 1151
            S  KQP PGGPITPVHDLN+             +                   TPL  P 
Sbjct: 61   SGQKQPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPP--------------TPLQTPA 106

Query: 1150 STPLQGSADNSMYNIPTGSSDYPTPASD-SGGNTETKGGNGRXXXXXXXXXXXXXXXXXP 974
             TPL GSAD SMYNIPTGSSDYPTP +D SGGNT+ KG                     P
Sbjct: 107  PTPLPGSADGSMYNIPTGSSDYPTPVNDNSGGNTDVKGAR---PSPYAQSPSPWPNQRTP 163

Query: 973  LSVDVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDGAG 794
            LSVDVNVAYVEGR+E DRGTS+QPL QDFFTMSAGKRKREDF +QY N GY IPQQDGAG
Sbjct: 164  LSVDVNVAYVEGREEGDRGTSNQPLTQDFFTMSAGKRKREDFATQYHNSGY-IPQQDGAG 222

Query: 793  DATSEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSYDDMLSTP 644
            D TSE+  LE S+G          T+   ++ A   +S  KIPQ DGPIPD YDDMLSTP
Sbjct: 223  DVTSEVTNLEGSKGDNDLDRCYSATTEKIKVEAPSVTSSSKIPQQDGPIPDPYDDMLSTP 282

Query: 643  NIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAAXXXXXXXXXXXXXXXXXXXXXX 464
            NIYNYQGVVNEDYN+VNTPAPNDLQA+TPA V QND                        
Sbjct: 283  NIYNYQGVVNEDYNVVNTPAPNDLQAATPAPVPQNDTGDDDDDEPLNEDDDDDLDDVDQG 342

Query: 463  XXXNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
               NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEFEF
Sbjct: 343  EDMNTAHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 392


>XP_017983002.1 PREDICTED: transcription initiation factor IIA large subunit isoform
            X1 [Theobroma cacao]
          Length = 418

 Score =  461 bits (1185), Expect = e-156
 Identities = 260/433 (60%), Positives = 281/433 (64%), Gaps = 37/433 (8%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDRS 1325
            MA+S TS VYI VIEDVI+KVRDEF+NNG PGE+VLNELQGIWEMKM+QAGVVCGPI+RS
Sbjct: 1    MASSTTSAVYIHVIEDVINKVRDEFINNGGPGETVLNELQGIWEMKMMQAGVVCGPIERS 60

Query: 1324 SVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1145
            S  KQP PGGPITPVHDLN+             +                   TP+P  T
Sbjct: 61   SGQKQPTPGGPITPVHDLNVPYEGPEEYETPTADMLFPPTPL----------QTPVP--T 108

Query: 1144 PLQGSADNSMYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXXXPLSV 965
            PL GSAD SMYNIPTGSSDYPTP +D GGNT+ KG                     PLSV
Sbjct: 109  PLPGSADGSMYNIPTGSSDYPTPVNDGGGNTDAKGAR---PSPYMQSPSPWPNQRTPLSV 165

Query: 964  DVNV-------------------------AYVEGRDEADRGTSHQPLAQDFFTMSAGKRK 860
            DVNV                         AYVEGRDE DRG SHQPL QDFF MS+GKRK
Sbjct: 166  DVNVGEYVIKRAISSNPLRFVNNKCYFLVAYVEGRDEVDRGPSHQPLTQDFFMMSSGKRK 225

Query: 859  REDFPSQYQNGGYNIPQQDGAGDATSEIFELEVSQG----------TSANRQILAHLASS 710
            REDF +QY NGG  IPQQDGAGDA  E+ + E S+G          T+A  +ILAHLA S
Sbjct: 226  REDFTTQYHNGGGYIPQQDGAGDAIYEVAKAEGSKGSDFLDRRDSTTTAKSEILAHLARS 285

Query: 709  LVKIPQLDGPIPDSYDDMLSTPNIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAA 530
              KIPQLDGPIPD YDDMLSTPNIYNYQGVVNEDYN+VNTPAPNDLQA+TPA V QND  
Sbjct: 286  SSKIPQLDGPIPDPYDDMLSTPNIYNYQGVVNEDYNVVNTPAPNDLQAATPAPVAQNDTG 345

Query: 529  -XXXXXXXXXXXXXXXXXXXXXXXXXNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 353
                                      NTQHLVLAQFDKVTRTKSRWKC LKDGIMHINNK
Sbjct: 346  DDDDDEPLNEDDDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNK 405

Query: 352  DILFNKATGEFEF 314
            DILFNKATGEF+F
Sbjct: 406  DILFNKATGEFDF 418


>XP_012446718.1 PREDICTED: transcription initiation factor IIA large subunit
            [Gossypium raimondii] KJB55819.1 hypothetical protein
            B456_009G096500 [Gossypium raimondii]
          Length = 391

 Score =  454 bits (1167), Expect = e-154
 Identities = 246/407 (60%), Positives = 273/407 (67%), Gaps = 11/407 (2%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDRS 1325
            M +S TS VYI VIEDVISKVRDEF+NNG PGE+VLNELQG+WE KM+QAG +CGPI+RS
Sbjct: 1    MTSSTTSAVYIHVIEDVISKVRDEFINNGGPGEAVLNELQGLWETKMMQAGAICGPIERS 60

Query: 1324 SVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1145
            +  KQP  GGPITPVHDLN+             +                   TP+P  T
Sbjct: 61   TGQKQPTAGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPL----------QTPVP--T 108

Query: 1144 PLQGSADNSMYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXXXPLSV 965
            PL GSAD SMYNIPTGSSDYPTP +D   N + KGG                    PLSV
Sbjct: 109  PLPGSADGSMYNIPTGSSDYPTPVNDGASNADVKGGR---PSPYMQSPSPWSNQRTPLSV 165

Query: 964  DVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDGAGDAT 785
            DVNVAYVEGRDE DRGTS+QPL QDFF M  GKRKREDF +QY NGGY IPQQDGAGD+T
Sbjct: 166  DVNVAYVEGRDEVDRGTSNQPLTQDFFMMPPGKRKREDFATQYNNGGY-IPQQDGAGDST 224

Query: 784  SEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSYDDMLSTPNIY 635
            SE+ + E S+G          T+    ILAH A+S +KI QLDGPIPD ++DMLSTPNIY
Sbjct: 225  SEVAKTEGSKGCNFLGRHDSATTGKTNILAHFATSSLKISQLDGPIPDPFEDMLSTPNIY 284

Query: 634  NYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAAXXXXXXXXXXXXXXXXXXXXXXXXX 455
            NYQGVV EDYN+ NTPAPNDLQA+TPA V QND                           
Sbjct: 285  NYQGVVGEDYNVANTPAPNDLQAATPAPVAQNDTGDDDDDEPLNEDDDDDDLDDVDQEEL 344

Query: 454  NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
            NTQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 345  NTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 391


>GAV78305.1 TFIIA domain-containing protein [Cephalotus follicularis]
          Length = 397

 Score =  451 bits (1160), Expect = e-153
 Identities = 252/410 (61%), Positives = 277/410 (67%), Gaps = 14/410 (3%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDRS 1325
            MATS TS VYI VIEDVI+KVR+EFVNNG PG+SVL ELQG+WEMKM+ AGV+CGPI+RS
Sbjct: 1    MATSTTSSVYIHVIEDVINKVREEFVNNGGPGDSVLTELQGLWEMKMMHAGVICGPIERS 60

Query: 1324 SVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGS- 1148
            S PKQPAPGGPITPVHDLN+             E                   TPLPGS 
Sbjct: 61   SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPI------QTPLPGSA 114

Query: 1147 -TPLQGSADN-SMYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXXXP 974
             TPL GSADN SMYNIPTG S+YPTP SDSGG+++ KGG                     
Sbjct: 115  ATPLLGSADNSSMYNIPTGPSEYPTPVSDSGGSSDVKGGRQYMPSPSPTPWMSQRPPV-- 172

Query: 973  LSVDVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDGAG 794
              VDVNVAYVEGRDE DRG+S QPL QDFF MS+GKRKREDF +QY + GY IPQQDGAG
Sbjct: 173  --VDVNVAYVEGRDEVDRGSSQQPLTQDFFMMSSGKRKREDFATQYHSSGY-IPQQDGAG 229

Query: 793  DATSEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSYDDMLSTP 644
            DAT     L+VS+G          TSA R++LA    S  KIPQLDGPIPD YDD+LSTP
Sbjct: 230  DATPGF--LQVSKGSDSLAGRGTVTSAKREMLACGTRSSSKIPQLDGPIPDPYDDVLSTP 287

Query: 643  NIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAAXXXXXXXXXXXXXXXXXXXXXX 464
            NIYNYQGVVNEDYNIVNTPA N+LQA TPA++ Q D                        
Sbjct: 288  NIYNYQGVVNEDYNIVNTPAVNELQAGTPAIIAQQDVVDDDDDEPLNENDDDELDDVDQG 347

Query: 463  XXXNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
               NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 348  EELNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 397


>XP_016750614.1 PREDICTED: transcription initiation factor IIA large subunit-like
            [Gossypium hirsutum]
          Length = 391

 Score =  451 bits (1159), Expect = e-152
 Identities = 245/409 (59%), Positives = 271/409 (66%), Gaps = 13/409 (3%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDRS 1325
            M +S TS VYI VIEDVI+KVRDEF+NNG PGE+VLNELQG+WE KM+QAG +CGPI+RS
Sbjct: 1    MTSSTTSAVYIHVIEDVINKVRDEFINNGGPGEAVLNELQGLWETKMMQAGAICGPIERS 60

Query: 1324 SVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPL--PG 1151
            +  KQP  GGPITPVHDLN+             +                   TPL  P 
Sbjct: 61   TGQKQPTAGGPITPVHDLNVPYEGTEEYETPTADMLFPP--------------TPLQTPA 106

Query: 1150 STPLQGSADNSMYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXXXPL 971
             TPL GSAD SMYNIPTGSSDYPTP +D   N + KGG                    PL
Sbjct: 107  PTPLSGSADGSMYNIPTGSSDYPTPVNDGASNADVKGGR---PSPYMQSPSPWSNQRTPL 163

Query: 970  SVDVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDGAGD 791
            SVDVNVAYVEGRDE DRGTS+QPL QDFF M  GKRKREDF +QY NGGY IPQQDGAGD
Sbjct: 164  SVDVNVAYVEGRDEVDRGTSNQPLTQDFFMMPPGKRKREDFATQYNNGGY-IPQQDGAGD 222

Query: 790  ATSEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSYDDMLSTPN 641
            +TSE+ + E S+G          T+    ILAH  +S  KI QLDGPIPD ++DMLSTPN
Sbjct: 223  STSEVAKTEGSKGCNFLGRHDSATTGKTNILAHFVTSSPKISQLDGPIPDPFEDMLSTPN 282

Query: 640  IYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAAXXXXXXXXXXXXXXXXXXXXXXX 461
            IYNYQGVV EDYN+ NTPAPNDLQA+TPA V QND                         
Sbjct: 283  IYNYQGVVGEDYNVANTPAPNDLQAATPAPVAQNDTGDNDDDEPLNEDDDDDDLDDVDQE 342

Query: 460  XXNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
              NTQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 343  ELNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 391


>XP_017647079.1 PREDICTED: transcription initiation factor IIA large subunit-like
            [Gossypium arboreum]
          Length = 391

 Score =  449 bits (1156), Expect = e-152
 Identities = 245/409 (59%), Positives = 271/409 (66%), Gaps = 13/409 (3%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDRS 1325
            M +S TS VYI VIEDVI+KVRDEF+NNG PGE+VLNELQG+WE KM+QAG +CGPI+RS
Sbjct: 1    MTSSTTSAVYIHVIEDVINKVRDEFINNGGPGEAVLNELQGLWETKMMQAGAICGPIERS 60

Query: 1324 SVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPL--PG 1151
            +  KQP  GGPITPVHDLN+             +                   TPL  P 
Sbjct: 61   TGQKQPTAGGPITPVHDLNVPYEGTEEYETPTADMLFPP--------------TPLQTPA 106

Query: 1150 STPLQGSADNSMYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXXXPL 971
             TPL GSAD SMYNIPTGSSDYPTP +D   N + KGG                    PL
Sbjct: 107  PTPLPGSADGSMYNIPTGSSDYPTPVNDGTSNADVKGGR---PSPYMQSPSPWSNQRTPL 163

Query: 970  SVDVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDGAGD 791
            SVDVNVAYVEGRDE DRGTS+QPL QDFF M  GKRKREDF +QY NGGY IPQQDGAGD
Sbjct: 164  SVDVNVAYVEGRDEVDRGTSNQPLTQDFFMMPPGKRKREDFATQYNNGGY-IPQQDGAGD 222

Query: 790  ATSEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSYDDMLSTPN 641
            +TSE+ + E S+G          T+    ILAH  +S  KI QLDGPIPD ++DMLSTPN
Sbjct: 223  STSEVAKTEGSKGCNFLGRHDSATTGKTNILAHFVTSSPKISQLDGPIPDPFEDMLSTPN 282

Query: 640  IYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAAXXXXXXXXXXXXXXXXXXXXXXX 461
            IYNYQGVV EDYN+ NTPAPNDLQA+TPA V QND                         
Sbjct: 283  IYNYQGVVGEDYNVANTPAPNDLQAATPAPVAQNDTGDNDDDEPLNEDDDDDDLDDVDQE 342

Query: 460  XXNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
              NTQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 343  ELNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 391


>XP_017612850.1 PREDICTED: transcription initiation factor IIA large subunit-like
            [Gossypium arboreum]
          Length = 390

 Score =  449 bits (1154), Expect = e-152
 Identities = 252/408 (61%), Positives = 280/408 (68%), Gaps = 12/408 (2%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDRS 1325
            MA++ TS VYI VIEDVI+KVR+EF+NNG PGE+VLNELQGIWE KM+QAGV+ GPI+RS
Sbjct: 1    MASTTTSSVYINVIEDVINKVREEFINNGGPGEAVLNELQGIWEAKMMQAGVILGPIERS 60

Query: 1324 SVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1145
            S  KQP PG  ITPVHDLN+             +                   TP+P  T
Sbjct: 61   S-QKQPTPGSAITPVHDLNVPYEGTEEYETPTADMLFPPTPL----------QTPVP--T 107

Query: 1144 PLQGSADNSMYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXXXPLSV 965
            PL GSAD SMYNIPTG SDYPTP +D+G N + KGG                    PLSV
Sbjct: 108  PLPGSADGSMYNIPTGGSDYPTPVNDNGSNADIKGGR---PSPYMQSPSAWSNQRTPLSV 164

Query: 964  DVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDGAGDAT 785
            DVNVAYVEGR+E DRGTS+QPL QDFF MS+GKRKREDF +QYQNGGY IPQQDGAGDAT
Sbjct: 165  DVNVAYVEGREEVDRGTSNQPLTQDFFMMSSGKRKREDF-AQYQNGGY-IPQQDGAGDAT 222

Query: 784  SEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSYDDMLSTPNIY 635
            SE+ + E S+G          T+A  +ILA L+ SL KIPQLDGPIPD Y+DMLSTPNIY
Sbjct: 223  SEVAKAEGSRGGNFLDRRHSTTTAKSKILAELSKSLSKIPQLDGPIPDPYEDMLSTPNIY 282

Query: 634  NYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAA-XXXXXXXXXXXXXXXXXXXXXXXX 458
            NYQGVVNEDYN+VNTPAPNDLQASTPA   QND                           
Sbjct: 283  NYQGVVNEDYNVVNTPAPNDLQASTPAPAPQNDIVDDDDDEPLNEDDDEDDLDDVDQGEE 342

Query: 457  XNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
             NTQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 343  LNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 390


>XP_012066966.1 PREDICTED: transcription initiation factor IIA large subunit
            [Jatropha curcas] KDP42211.1 hypothetical protein
            JCGZ_02941 [Jatropha curcas]
          Length = 407

 Score =  449 bits (1155), Expect = e-152
 Identities = 259/416 (62%), Positives = 284/416 (68%), Gaps = 20/416 (4%)
 Frame = -1

Query: 1501 MATSG-TSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDR 1328
            MATS  TS VYI VIEDVI+KVRDEF+NNG PGESVLNELQGIWEMKM+QAGV+ GPI+R
Sbjct: 1    MATSSATSTVYIHVIEDVINKVRDEFINNGGPGESVLNELQGIWEMKMMQAGVILGPIER 60

Query: 1327 SSVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGS--TPLP 1154
            SS  K P PGGPITPVHDLN+             E                PGS  TPLP
Sbjct: 61   SSAAK-PVPGGPITPVHDLNVPYEGPEEYETPTAEILFPPTPLQTPIQTPLPGSVQTPLP 119

Query: 1153 GS--TPLQGSADNS-MYNIPTG-SSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXX 986
            G+  TPL GSADNS MYNIPTG +S+YPTP SD+GG+TE K G                 
Sbjct: 120  GNGQTPLPGSADNSSMYNIPTGPTSEYPTPVSDTGGSTEAKPGRPSPYMQAPSPWMNQRP 179

Query: 985  XXXPLSVDVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQ 806
                  +DVNVAYVEGR+EADRG SHQPL QDFF MS+GKRKREDF +Q+ NGG+ IPQQ
Sbjct: 180  P-----LDVNVAYVEGREEADRGNSHQPLTQDFFMMSSGKRKREDFATQFNNGGF-IPQQ 233

Query: 805  DGAGDATSEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSYDDM 656
            DGAGD  SE   L+ SQG          TSAN +IL+H    ++KIPQLDGPIPD YDD+
Sbjct: 234  DGAGDVPSEA--LQASQGNGSLGRCDTITSANIEILSHATRRVLKIPQLDGPIPDPYDDV 291

Query: 655  LSTPNIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAA--XXXXXXXXXXXXXXXX 482
            LSTPNIYNYQGVVNEDYNI NTPAPND+QASTPAV  QNDA                   
Sbjct: 292  LSTPNIYNYQGVVNEDYNIANTPAPNDIQASTPAVAPQNDAVDDDDDEPLNEDDDDDDDL 351

Query: 481  XXXXXXXXXNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
                     NTQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 352  DDVEQGEDMNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 407


>OAY61177.1 hypothetical protein MANES_01G169400 [Manihot esculenta]
          Length = 407

 Score =  448 bits (1153), Expect = e-151
 Identities = 259/416 (62%), Positives = 282/416 (67%), Gaps = 20/416 (4%)
 Frame = -1

Query: 1501 MATSGT-SMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDR 1328
            MATS T S VYI VIEDVI+KVRDEF+NNG PGE VL+ELQ IWEMKM+QAGV+CGPIDR
Sbjct: 1    MATSSTTSTVYIHVIEDVINKVRDEFINNGGPGEGVLSELQAIWEMKMMQAGVICGPIDR 60

Query: 1327 SSVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGS--TPLP 1154
            SS PK  APG PITPVHDLN+             E                PGS  TPLP
Sbjct: 61   SSAPKL-APGAPITPVHDLNVPYEGTEEYETPTAEMLFPPTPLQTPIQTPLPGSVQTPLP 119

Query: 1153 GS--TPLQGSADNS-MYNIPTG-SSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXX 986
            GS  TPL GS DNS MYNIPTG +S+YPTPASD+GG+TE K G                 
Sbjct: 120  GSVQTPLPGSVDNSSMYNIPTGPTSEYPTPASDTGGSTEAKAGRPSPYMQPPSPWMNQRP 179

Query: 985  XXXPLSVDVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQ 806
                  +DVNVAYVEGRDEADRG SHQPL QDFF MS+GKRKR+DF +QY NGG+ IPQQ
Sbjct: 180  P-----LDVNVAYVEGRDEADRGASHQPLTQDFFMMSSGKRKRDDFGAQYNNGGF-IPQQ 233

Query: 805  DGAGDATSEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSYDDM 656
            DGAGDA S    L+ SQG          T+AN +IL+H     ++IPQLDGPIPD YDD+
Sbjct: 234  DGAGDAPS--VALQASQGYGSLGRHDMITNANIEILSHATRQAMRIPQLDGPIPDPYDDV 291

Query: 655  LSTPNIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAA--XXXXXXXXXXXXXXXX 482
            LSTPNIYNYQGVVNEDYNI NTPAPNDLQASTPAV  QNDA                   
Sbjct: 292  LSTPNIYNYQGVVNEDYNIANTPAPNDLQASTPAVAPQNDAGDDDDDEPLNEDDDDDDDL 351

Query: 481  XXXXXXXXXNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
                     NTQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 352  DDVEQGEDMNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 407


>XP_012475136.1 PREDICTED: transcription initiation factor IIA large subunit-like
            [Gossypium raimondii] KJB08914.1 hypothetical protein
            B456_001G112500 [Gossypium raimondii]
          Length = 391

 Score =  447 bits (1150), Expect = e-151
 Identities = 252/409 (61%), Positives = 279/409 (68%), Gaps = 13/409 (3%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDRS 1325
            MA++ TS VYI VIEDVI+KVR+EF+NNG PGE+VLNELQGIWE KM+QAGV+ GPI+RS
Sbjct: 1    MASTTTSSVYINVIEDVINKVREEFINNGGPGEAVLNELQGIWEAKMMQAGVILGPIERS 60

Query: 1324 SVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1145
            S  KQP PG  ITPVHDLN+             +                   TP+P  T
Sbjct: 61   S-QKQPTPGSAITPVHDLNVPYEGTEEYETPTADMLFPPTPL----------QTPVP--T 107

Query: 1144 PLQGSADNSMYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXXXPLSV 965
            PL GSAD SMYNIPTG SDYPTP +D+G N + KGG                    PLSV
Sbjct: 108  PLPGSADGSMYNIPTGGSDYPTPVNDNGSNADIKGGR---PSPYMQSPSPWSNQRTPLSV 164

Query: 964  DVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDGAGDAT 785
            DVNVAYVEGR+E DRGTS+QPL QDFF MS+GKRKREDF +QYQNGGY IPQQDGAGDAT
Sbjct: 165  DVNVAYVEGREEVDRGTSNQPLTQDFFMMSSGKRKREDF-AQYQNGGY-IPQQDGAGDAT 222

Query: 784  SEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSYDDMLSTPNIY 635
            SE+ + E S+G          T+A  + LA LA S  KIPQLDGPIPDSY+DMLSTPNIY
Sbjct: 223  SEVAKAEGSRGGNFLDRRHSTTTAKSKFLAELARSSSKIPQLDGPIPDSYEDMLSTPNIY 282

Query: 634  NYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAA--XXXXXXXXXXXXXXXXXXXXXXX 461
            NYQGVVNEDYN+VNTPAPNDLQASTPA   QND                           
Sbjct: 283  NYQGVVNEDYNVVNTPAPNDLQASTPAPAPQNDIVDDDDDEPLNEDDDDEDDLDDVDQGE 342

Query: 460  XXNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
              NTQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 343  ELNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 391


>XP_016751701.1 PREDICTED: transcription initiation factor IIA large subunit-like
            [Gossypium hirsutum]
          Length = 390

 Score =  446 bits (1148), Expect = e-151
 Identities = 251/408 (61%), Positives = 279/408 (68%), Gaps = 12/408 (2%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDRS 1325
            MA++ TS VYI VIEDVI+KVR+EF+NNG PGE+VLNELQGIWE KM+QAGV+ GPI+RS
Sbjct: 1    MASTTTSSVYINVIEDVINKVREEFINNGGPGEAVLNELQGIWEAKMMQAGVILGPIERS 60

Query: 1324 SVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1145
            S  KQP PG  ITPVHDLN+             +                   TP+P  T
Sbjct: 61   S-QKQPTPGSAITPVHDLNVPYEGTEEYETPTADMLFPPTPL----------QTPVP--T 107

Query: 1144 PLQGSADNSMYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXXXPLSV 965
            PL GSAD SMYNIPTG SDYPTP +D+G N + KGG                    PLSV
Sbjct: 108  PLPGSADGSMYNIPTGGSDYPTPVNDNGSNADIKGGR---PSPYMQSPSPWSNQRTPLSV 164

Query: 964  DVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDGAGDAT 785
            DVNVAYVEGR+E DRGTS+QPL QDFF MS+GKRKREDF +QYQNGGY IPQQDGAGDAT
Sbjct: 165  DVNVAYVEGREEVDRGTSNQPLTQDFFMMSSGKRKREDF-AQYQNGGY-IPQQDGAGDAT 222

Query: 784  SEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSYDDMLSTPNIY 635
            SE+ + E S+G          T+A  +ILA L+ S  KIPQLDGPIPD Y+DMLSTPNIY
Sbjct: 223  SEVAKAEGSRGGNFLDRRHSTTTAKSKILAELSKSSSKIPQLDGPIPDPYEDMLSTPNIY 282

Query: 634  NYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAA-XXXXXXXXXXXXXXXXXXXXXXXX 458
            NYQGVVNEDYN+VNTPAPNDLQASTPA   QND                           
Sbjct: 283  NYQGVVNEDYNVVNTPAPNDLQASTPAPAPQNDIVDDDDDEPLNEDDDEDDLDDVDQGEE 342

Query: 457  XNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
             NTQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 343  LNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 390


>XP_016745211.1 PREDICTED: transcription initiation factor IIA large subunit-like
            [Gossypium hirsutum]
          Length = 391

 Score =  445 bits (1145), Expect = e-150
 Identities = 252/409 (61%), Positives = 279/409 (68%), Gaps = 13/409 (3%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDRS 1325
            MA++ TS VYI VIEDVI+KVR+EF+NNG PGE+VLNELQGIWE KM+QAGV+ GPI+RS
Sbjct: 1    MASTTTSSVYINVIEDVINKVREEFINNGGPGEAVLNELQGIWEAKMMQAGVILGPIERS 60

Query: 1324 SVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1145
            S  KQP PG  ITPVHDLN+             +                   TP+P  T
Sbjct: 61   S-QKQPTPGSAITPVHDLNVPYEGTEEYETPTADMLFPPTPL----------QTPVP--T 107

Query: 1144 PLQGSADNSMYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXXXPLSV 965
            PL GSAD SMYNIPTG SD PTP +D+G N + KGG                    PLSV
Sbjct: 108  PLPGSADGSMYNIPTGGSDSPTPVNDNGSNADIKGGR---PSPYMQSPSPWSNQRTPLSV 164

Query: 964  DVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDGAGDAT 785
            DVNVAYVEGR+E DRGTS+QPL QDFF MS+GKRKREDF +QYQNGGY IPQQDGAGDAT
Sbjct: 165  DVNVAYVEGREEVDRGTSNQPLTQDFFMMSSGKRKREDF-AQYQNGGY-IPQQDGAGDAT 222

Query: 784  SEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSYDDMLSTPNIY 635
            SE+ + E S+G          T+A  +ILA LA S  KIPQLDGPIPDSY+DMLSTPNIY
Sbjct: 223  SEVAKAEGSRGGNFLDRRHSTTTAKSKILAELARSSSKIPQLDGPIPDSYEDMLSTPNIY 282

Query: 634  NYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAA--XXXXXXXXXXXXXXXXXXXXXXX 461
            NYQGVVNEDYN+VNTPAPNDLQASTPA   QND                           
Sbjct: 283  NYQGVVNEDYNVVNTPAPNDLQASTPAPAPQNDIVDDDDDEPLNEDDDDEDDLDDVDQGE 342

Query: 460  XXNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
              NTQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 343  ELNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 391


>XP_011032247.1 PREDICTED: transcription initiation factor IIA subunit 1-like isoform
            X1 [Populus euphratica]
          Length = 408

 Score =  439 bits (1128), Expect = e-148
 Identities = 249/414 (60%), Positives = 278/414 (67%), Gaps = 19/414 (4%)
 Frame = -1

Query: 1498 ATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDRSS 1322
            ++  TS VYI VIEDVI+KVRDEF+NNG PGE+VL ELQG+WE KM+QAG +CG  +RSS
Sbjct: 3    SSDATSPVYINVIEDVINKVRDEFINNGGPGETVLYELQGLWEAKMMQAGAICGTAERSS 62

Query: 1321 VPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGS--TPLPGS 1148
              K P PGGPITPVHDLN+             E                PGS  TPLPG+
Sbjct: 63   ANKLPVPGGPITPVHDLNVPYEGTEEYETPTAEMLFPPTPMQTPMQTPLPGSAQTPLPGN 122

Query: 1147 --TPLQGSADNS-MYNIPTGSSDYPTPASDSGGNTETKGGNGRXXXXXXXXXXXXXXXXX 977
              TPL GS DNS MYNIPTGSSDYPTP SD+GG+T+ K G                    
Sbjct: 123  AQTPLPGSVDNSSMYNIPTGSSDYPTPGSDTGGSTDGKAGR----PSPFMQPPTWMHQRP 178

Query: 976  PLSVDVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNIPQQDGA 797
            PLSVDVNVAYVEGRDE DRGTSHQ L QDFF M +GKRKREDF  +Y NGG+ IPQQDGA
Sbjct: 179  PLSVDVNVAYVEGRDEVDRGTSHQTLTQDFF-MPSGKRKREDFAPKYNNGGF-IPQQDGA 236

Query: 796  GDATSEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSYDDMLST 647
            GD+ SE+ +  VSQG          T+ N+ ILA ++ S +KIPQ+DGPIPD YDD++ST
Sbjct: 237  GDSASEVSQ--VSQGNDPLGRCDTSTTKNKVILARVSRSYLKIPQVDGPIPDPYDDVVST 294

Query: 646  PNIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAAXXXXXXXXXXXXXXXXXXXXX 467
            PNIYNYQGV NEDYNI NTPAPNDL ASTPAVV+QND A                     
Sbjct: 295  PNIYNYQGVANEDYNIANTPAPNDLLASTPAVVSQNDVADDDDDDEPLNEDDDDDEDLDE 354

Query: 466  XXXXN---TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
                    TQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEFEF
Sbjct: 355  VDQGEELNTQHLVLAQFDKVTRTKSRWKCILKDGIMHINNKDILFNKATGEFEF 408


>XP_018820031.1 PREDICTED: transcription initiation factor IIA large subunit-like
            [Juglans regia]
          Length = 397

 Score =  434 bits (1117), Expect = e-146
 Identities = 247/418 (59%), Positives = 267/418 (63%), Gaps = 22/418 (5%)
 Frame = -1

Query: 1501 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVVCGPIDRS 1325
            MA S TS VYI+VIEDVI+KVRDEFVNNG PGE VL E QG WE KMIQAGVV GPIDR+
Sbjct: 1    MAASTTSNVYIQVIEDVINKVRDEFVNNGGPGEDVLKEFQGTWEAKMIQAGVVIGPIDRT 60

Query: 1324 SVPKQPAPGGPITPVHDLNIXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPL--PG 1151
               K P PGGPITPVHDLN+             E                   TPL  P 
Sbjct: 61   GALK-PTPGGPITPVHDLNVPYEGTEEYETPTAEMLFPP--------------TPLQTPS 105

Query: 1150 STPLQGSADNSMYNIPTGSSDYPTPASDSGG--------NTETKGGNGRXXXXXXXXXXX 995
             TPL G+A+NSMYNIPTG SDYPTP +D+GG        N E KGG              
Sbjct: 106  QTPLPGTAENSMYNIPTGPSDYPTPGNDTGGGGGGNNNNNNEAKGGR-----PSPFMQPP 160

Query: 994  XXXXXXPLSVDVNVAYVEGRDEADRGTSHQPLAQDFFTMSAGKRKREDFPSQYQNGGYNI 815
                     +DVNVAYVEGRDE DRG SHQPL QDFF   +GKRKREDF SQY  GG+ I
Sbjct: 161  SPWINQRAPLDVNVAYVEGRDEVDRGASHQPLTQDFFVAPSGKRKREDFSSQYHAGGF-I 219

Query: 814  PQQDGAGDATSEIFELEVSQG----------TSANRQILAHLASSLVKIPQLDGPIPDSY 665
            PQQDGAGDAT E+FE+EVS G          T+AN++ LA++  S  KIPQLDGPIPD Y
Sbjct: 220  PQQDGAGDATLEVFEIEVSGGSASLGGHCIVTTANKETLAYVRESSSKIPQLDGPIPDPY 279

Query: 664  DDMLSTPNIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDAA-XXXXXXXXXXXXXX 488
            DD+LSTPNIYNYQG  NEDYNI NTPAP D+ A TPAVV QND                 
Sbjct: 280  DDVLSTPNIYNYQGAYNEDYNIANTPAPTDIPAGTPAVVAQNDVVEDDDDEPPLNENDDD 339

Query: 487  XXXXXXXXXXXNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFEF 314
                       NTQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEFEF
Sbjct: 340  DFDDVDEGEEQNTQHLVLAQFDKVTRTKSRWKCLLKDGIMHINNKDILFNKATGEFEF 397