BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Phellodendron21_contig00000944
         (1784 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_006422121.1 hypothetical protein CICLE_v10004760mg [Citrus cl...   831   0.0  
KDO56129.1 hypothetical protein CISIN_1g010092mg [Citrus sinensis]    825   0.0  
XP_018505629.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   719   0.0  
XP_007219010.1 hypothetical protein PRUPE_ppa004259mg [Prunus pe...   718   0.0  
XP_007038959.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   716   0.0  
XP_008376694.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   716   0.0  
XP_018503184.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   716   0.0  
XP_009368680.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   715   0.0  
XP_015878246.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   711   0.0  
XP_009357326.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   710   0.0  
XP_018838242.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   707   0.0  
XP_011001910.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   703   0.0  
XP_004308009.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   701   0.0  
XP_006376620.1 RNA polymerase sigma subunit SigE family protein ...   700   0.0  
OMO75948.1 RNA polymerase sigma-70 [Corchorus capsularis]             699   0.0  
OMO56397.1 RNA polymerase sigma-70 [Corchorus olitorius]              699   0.0  
XP_016737339.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   694   0.0  
XP_011007924.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   693   0.0  
XP_012440029.1 PREDICTED: RNA polymerase sigma factor sigE, chlo...   692   0.0  
KJB52622.1 hypothetical protein B456_008G270500 [Gossypium raimo...   692   0.0  

>XP_006422121.1 hypothetical protein CICLE_v10004760mg [Citrus clementina]
            XP_006422122.1 hypothetical protein CICLE_v10004760mg
            [Citrus clementina] XP_006490565.1 PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Citrus sinensis] XP_006490566.1 PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Citrus sinensis] XP_006490567.1 PREDICTED: RNA
            polymerase sigma factor sigE, chloroplastic/mitochondrial
            [Citrus sinensis] ESR35361.1 hypothetical protein
            CICLE_v10004760mg [Citrus clementina] ESR35362.1
            hypothetical protein CICLE_v10004760mg [Citrus
            clementina] KDO56125.1 hypothetical protein
            CISIN_1g010092mg [Citrus sinensis] KDO56126.1
            hypothetical protein CISIN_1g010092mg [Citrus sinensis]
            KDO56127.1 hypothetical protein CISIN_1g010092mg [Citrus
            sinensis] KDO56128.1 hypothetical protein
            CISIN_1g010092mg [Citrus sinensis]
          Length = 513

 Score =  831 bits (2147), Expect = 0.0
 Identities = 428/514 (83%), Positives = 455/514 (88%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLSTITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETPKQ 238
            MG+VTISSS ARSPIGLSTI+HRSTSKRPLIVAFKADK +N AL +P EQIPLPIETPK+
Sbjct: 1    MGVVTISSSPARSPIGLSTISHRSTSKRPLIVAFKADKSNNQALFSPQEQIPLPIETPKR 60

Query: 239  HQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKISDVEDTNGI 418
            HQKRR   R   +RVK VF+DEASPCTLDVDYNEAAAKLENIYK SP +  S+V+  +G+
Sbjct: 61   HQKRRENSRKRLERVKGVFSDEASPCTLDVDYNEAAAKLENIYKLSPAVTTSEVKYADGV 120

Query: 419  VKRGQRRRKRTSEGEEKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVTELGKK 598
            VKRG++RRKR  E E+K+DD  G+PVVRN VK+PKRL+LDKRIELRKN+DE+ VT+  +K
Sbjct: 121  VKRGRQRRKRIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKRIELRKNEDEKVVTKT-RK 179

Query: 599  KDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAFLQVKE 778
             DSKD HEKIEKL REYS STDL SLDWKKMKIPPVLSSTEHTWLFKLMQPMK F+QVKE
Sbjct: 180  TDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKE 239

Query: 779  QLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFA 958
            QLQKDLGREPTD ELAEATNM  AQ+KKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFA
Sbjct: 240  QLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFA 299

Query: 959  NGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLE 1138
            NGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLE
Sbjct: 300  NGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLE 359

Query: 1139 SVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHVVTQEE 1318
            SVRGEIQRAKLELLFE KR+PTDEEIIQ V ISPERYREVM ASKP+LSLHSRH VTQEE
Sbjct: 360  SVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEE 419

Query: 1319 FINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEIAG 1498
            FINGITDVDG ENENQRQ               KPKESLVIRQRFGLDGKGDRTLGEIAG
Sbjct: 420  FINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAG 479

Query: 1499 NLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            NLNISREMVRKHEVK LMKLKHPTRVDYL QHMV
Sbjct: 480  NLNISREMVRKHEVKGLMKLKHPTRVDYLRQHMV 513


>KDO56129.1 hypothetical protein CISIN_1g010092mg [Citrus sinensis]
          Length = 518

 Score =  825 bits (2131), Expect = 0.0
 Identities = 428/519 (82%), Positives = 455/519 (87%), Gaps = 5/519 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLSTITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETPKQ 238
            MG+VTISSS ARSPIGLSTI+HRSTSKRPLIVAFKADK +N AL +P EQIPLPIETPK+
Sbjct: 1    MGVVTISSSPARSPIGLSTISHRSTSKRPLIVAFKADKSNNQALFSPQEQIPLPIETPKR 60

Query: 239  HQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKISDVEDTNGI 418
            HQKRR   R   +RVK VF+DEASPCTLDVDYNEAAAKLENIYK SP +  S+V+  +G+
Sbjct: 61   HQKRRENSRKRLERVKGVFSDEASPCTLDVDYNEAAAKLENIYKLSPAVTTSEVKYADGV 120

Query: 419  VKRGQRRRKRTSEGEEKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVTELGKK 598
            VKRG++RRKR  E E+K+DD  G+PVVRN VK+PKRL+LDKRIELRKN+DE+ VT+  +K
Sbjct: 121  VKRGRQRRKRIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKRIELRKNEDEKVVTKT-RK 179

Query: 599  KDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAFLQVKE 778
             DSKD HEKIEKL REYS STDL SLDWKKMKIPPVLSSTEHTWLFKLMQPMK F+QVKE
Sbjct: 180  TDSKDEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKE 239

Query: 779  QLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFA 958
            QLQKDLGREPTD ELAEATNM  AQ+KKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFA
Sbjct: 240  QLQKDLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFA 299

Query: 959  NGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLE 1138
            NGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLE
Sbjct: 300  NGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLE 359

Query: 1139 S-----VRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHV 1303
            S     VRGEIQRAKLELLFE KR+PTDEEIIQ V ISPERYREVM ASKP+LSLHSRH 
Sbjct: 360  STSIMQVRGEIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHG 419

Query: 1304 VTQEEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTL 1483
            VTQEEFINGITDVDG ENENQRQ               KPKESLVIRQRFGLDGKGDRTL
Sbjct: 420  VTQEEFINGITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTL 479

Query: 1484 GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            GEIAGNLNISREMVRKHEVK LMKLKHPTRVDYL QHMV
Sbjct: 480  GEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQHMV 518


>XP_018505629.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Pyrus x
            bretschneideri]
          Length = 544

 Score =  719 bits (1857), Expect = 0.0
 Identities = 374/526 (71%), Positives = 431/526 (81%), Gaps = 5/526 (0%)
 Frame = +2

Query: 38   LLFGHLGMGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAPLEQI 211
            L    LGMG+VT+S+SAAR+P+GLST   + RS  ++P IVAFK D+ +  ALVAP  +I
Sbjct: 19   LFLRELGMGVVTVSTSAARTPLGLSTKSTSQRSPFRKPWIVAFKTDESNKTALVAPQGKI 78

Query: 212  PLPIETPKQHQKRRGKGRTSPKRVKAVFTDEASPCT-LDVDYNEAAAKLENIYKRSPGIK 388
            PLPIET K+HQKR GK R   K VK+  TD A+PCT L+VDYNEAAAKLEN+YKRSP I+
Sbjct: 79   PLPIETRKKHQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIE 138

Query: 389  IS-DVEDTNGIVKRGQRRRKRTSEGE-EKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKN 562
               DVED +G+++RG++RRK+TSE + EK +      VVR+  KK KRLNLDKR+ L+ N
Sbjct: 139  ADVDVEDADGLLRRGRKRRKKTSESDHEKEEKRTSDIVVRSKTKKAKRLNLDKRVALKWN 198

Query: 563  KDEEAVTELGKKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKL 742
            KDE+ V+ + K+KD K+  EKIE+L REYS+STDL SLDWKKMKIPPVL+S+EH WLFKL
Sbjct: 199  KDEKVVSSVQKRKDQKNETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKL 258

Query: 743  MQPMKAFLQVKEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLV 922
            MQPMK   +V+EQLQKDLG EPT+GELAEATNM   Q+KK  EVGRAARNKLIKHNLRLV
Sbjct: 259  MQPMKGLHEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLV 318

Query: 923  LFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT 1102
            LFVI KYFQDFANGP+FQDLCQAGV+GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMT
Sbjct: 319  LFVINKYFQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMT 378

Query: 1103 VSSFTRVPFGLESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVL 1282
            VSSFTRV FGLESVR EIQ+AKLE++F  KR+PTDEEII+KVGISPERY EVM ASKPV 
Sbjct: 379  VSSFTRVSFGLESVRAEIQKAKLEMMFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVS 438

Query: 1283 SLHSRHVVTQEEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLD 1462
            SLHSRH  TQEE+INGITDVDG E +N+R+               KPKESLVIRQR+GLD
Sbjct: 439  SLHSRHATTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLD 498

Query: 1463 GKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            GKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 499  GKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 544


>XP_007219010.1 hypothetical protein PRUPE_ppa004259mg [Prunus persica] ONI25507.1
            hypothetical protein PRUPE_2G307500 [Prunus persica]
          Length = 519

 Score =  718 bits (1854), Expect = 0.0
 Identities = 370/519 (71%), Positives = 433/519 (83%), Gaps = 5/519 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETP 232
            MG+VT+SSSA+R+P+GLST     RST ++PLIVAFK D+ +  ALVAP E+IPLPIET 
Sbjct: 1    MGVVTVSSSASRTPLGLSTKLTIQRSTLRKPLIVAFKTDEANKTALVAPQEKIPLPIETR 60

Query: 233  KQHQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKI-SDVEDT 409
            K+HQKR GK R   K VK+  TD ASPCTL+VDYNEAAAKLEN+YKRSP  +  SDVED 
Sbjct: 61   KKHQKRLGKARKLAKSVKSATTDVASPCTLEVDYNEAAAKLENLYKRSPETEANSDVEDV 120

Query: 410  NGIVKRGQRRRKRTSEGE-EKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVTE 586
            +G+++RG++RRK+TSE + +K ++     VVRN  KK KRL+L+KR+ L+ NKDE+ ++ 
Sbjct: 121  DGLMRRGRKRRKKTSESDADKDENRTSNTVVRNRTKKAKRLSLNKRVALKWNKDEKVISS 180

Query: 587  LGKKKDS-KDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAF 763
            + +K+ S K+ +EKIE+L REYS+STDL SLDWKKMKIPPVL+S+EH WLFKLMQPMK  
Sbjct: 181  IVRKRKSRKNENEKIEELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 764  LQVKEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKY 943
            L+VKE LQKDLGREPT+GELAEATNM   Q+KK LEVGRAAR+KLIKHNLRLVLFV+ KY
Sbjct: 241  LEVKENLQKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKY 300

Query: 944  FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRV 1123
            FQDFANGP+FQDLCQAGVKGLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMT+SSFTRV
Sbjct: 301  FQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRV 360

Query: 1124 PFGLESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHV 1303
             FGLESVR EIQ+AKL +LF  KR+PT++EII+KVGISPERY EVM ASKPV SLHSRH 
Sbjct: 361  SFGLESVRAEIQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHSRHT 420

Query: 1304 VTQEEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTL 1483
             TQEEFINGITDVDG E +N+++               KPKESLVIRQR+GLDGKGDRTL
Sbjct: 421  TTQEEFINGITDVDGVEGDNRQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 1484 GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            GEIAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 519


>XP_007038959.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Theobroma cacao] EOY23460.1
            Sigma factor E isoform 1 [Theobroma cacao] EOY23461.1
            Sigma factor E isoform 1 [Theobroma cacao]
          Length = 516

 Score =  716 bits (1848), Expect = 0.0
 Identities = 370/516 (71%), Positives = 422/516 (81%), Gaps = 2/516 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETP 232
            MG+V++SSSAAR+P+GLST   T R TS+RPL VAFKADK  N ALV P E I LPIET 
Sbjct: 1    MGVVSVSSSAARTPLGLSTKFSTQRCTSRRPLTVAFKADKSDNTALVTPQEHILLPIETA 60

Query: 233  KQHQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKISDVEDTN 412
            K+H KRRGK +  PK V  VFTD+ SPCTL+VDYNEAAAKLENIYK SP  + SDVE+  
Sbjct: 61   KEHPKRRGKAKKDPKIVNHVFTDDGSPCTLEVDYNEAAAKLENIYKLSPATRSSDVEEVE 120

Query: 413  GIVKRGQRRRKRTSEGEEKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVTELG 592
            G +K  ++RRKR+ E +EK  +   + VVRN   + KRL+LD RI L+KN++E+ V  + 
Sbjct: 121  GKIKGRRQRRKRSKESDEKGVNSNDQIVVRNQTNRIKRLSLDNRIALKKNREEKPVVSVR 180

Query: 593  KKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAFLQV 772
            +KK S++  EKI++L R+YS+STDL SLDW+KMKIPPVL S EHTWLFKLMQPMKA LQ 
Sbjct: 181  RKKSSENESEKIDRLVRDYSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQA 240

Query: 773  KEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQD 952
            KE LQKDLGR+PT+ ELAEATNM  AQ++K LEVG+AARNKLIKHNLRLVLF I KYFQD
Sbjct: 241  KENLQKDLGRDPTEDELAEATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQD 300

Query: 953  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFG 1132
            FANGPRFQDLCQAGVKGLITAIDRFEP+RRFRLSTY LFWIRHAIIRSMT+SSFTRV FG
Sbjct: 301  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFG 360

Query: 1133 LESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHVVTQ 1312
            LESVR EIQRAKLELLFE  R PT+EEII+KVGISPERY+EVM ASKPV SLHSRH VTQ
Sbjct: 361  LESVRVEIQRAKLELLFELHREPTEEEIIKKVGISPERYQEVMRASKPVASLHSRHSVTQ 420

Query: 1313 EEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEI 1492
            EEFINGITD+DG   +++RQ               KPKESLVIRQR+GLDGKGDRTLGEI
Sbjct: 421  EEFINGITDIDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 480

Query: 1493 AGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            AGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>XP_008376694.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Malus domestica]
          Length = 519

 Score =  716 bits (1848), Expect = 0.0
 Identities = 371/519 (71%), Positives = 428/519 (82%), Gaps = 5/519 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLS--TITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETP 232
            MG+VT+S+SAAR+P+GLS  + + RST ++PLIVAFK D+ +  ALVAP  +IPLPIET 
Sbjct: 1    MGVVTVSTSAARTPLGLSAKSTSQRSTFRKPLIVAFKTDESNKTALVAPQGKIPLPIETR 60

Query: 233  KQHQKRRGKGRTSPKRVKAVFTDEASPCT-LDVDYNEAAAKLENIYKRSPGIKIS-DVED 406
            K+HQKR GK R   K VK+  TD A+PCT L+VDYNEAAAKLEN+YKRSP I+   DVED
Sbjct: 61   KKHQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVED 120

Query: 407  TNGIVKRGQRRRKRTSEGE-EKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVT 583
             +G+++RG++RRK+TSE   EK +      VVR+  KK KRLNLDKR+ L+ NKDE+ V+
Sbjct: 121  ADGLMRRGRKRRKKTSESNHEKEEKRTSDIVVRSKTKKAKRLNLDKRVSLKWNKDEKVVS 180

Query: 584  ELGKKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAF 763
             + K+KD K+  EKIE+L REYS+STDL SLDWKKMKIPPVL+S+EH WLFKLMQPMK  
Sbjct: 181  SVQKRKDQKNEMEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 764  LQVKEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKY 943
             + +EQLQKDLG EPT+GELAEATNM   Q+KK  EVGRAARNKLIKHNLRLVLFVI KY
Sbjct: 241  HEAREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 944  FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRV 1123
            FQDFANGP+FQDLCQAGV+GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMTVSSFTRV
Sbjct: 301  FQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFTRV 360

Query: 1124 PFGLESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHV 1303
             FGLESVR EIQ+AKLE++F  KR+PTDEEII+KVGISPERY EVM ASKPV SLHSRH 
Sbjct: 361  SFGLESVRAEIQKAKLEMIFSLKRIPTDEEIIEKVGISPERYHEVMRASKPVSSLHSRHA 420

Query: 1304 VTQEEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTL 1483
             TQEE+INGITDVDG E +N+R+               KPKESLVIRQR+GLDGKGDRTL
Sbjct: 421  TTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 1484 GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            GEIAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>XP_018503184.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Pyrus x
            bretschneideri]
          Length = 544

 Score =  716 bits (1849), Expect = 0.0
 Identities = 374/526 (71%), Positives = 430/526 (81%), Gaps = 5/526 (0%)
 Frame = +2

Query: 38   LLFGHLGMGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAPLEQI 211
            LL   LGMG+VT+S+SAAR+P+GLST   + RS  ++P IVAFK D+ +  ALVAP   I
Sbjct: 19   LLLRELGMGVVTVSTSAARTPLGLSTKSTSQRSPFRKPWIVAFKTDESNKTALVAPQGNI 78

Query: 212  PLPIETPKQHQKRRGKGRTSPKRVKAVFTDEASPCT-LDVDYNEAAAKLENIYKRSPGIK 388
            PLPIET K+ QKR GK R   K VK+  TD A+PCT L+VDYNEAAAKLEN+YKRSP I+
Sbjct: 79   PLPIETRKKLQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIE 138

Query: 389  IS-DVEDTNGIVKRGQRRRKRTSEGE-EKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKN 562
               DVED +G+++RG++RRK+TSE + EK +      VVR+  KK KRLNLDKR+ L+ N
Sbjct: 139  ADVDVEDADGLLRRGRKRRKKTSESDHEKEEKRTSDIVVRSKTKKAKRLNLDKRVALKWN 198

Query: 563  KDEEAVTELGKKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKL 742
            KDE+ V+ + K+KD K+  EKIE+L REYS+STDL SLDWKKMKIPPVL+S+EH WLFKL
Sbjct: 199  KDEKVVSSVQKRKDQKNETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKL 258

Query: 743  MQPMKAFLQVKEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLV 922
            MQPMK   +V+EQLQKDLG EPT+GELAEATNM   Q+KK  EVGRAARNKLIKHNLRLV
Sbjct: 259  MQPMKGLHEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLV 318

Query: 923  LFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT 1102
            LFVI KYFQDFANGP+FQDLCQAGV+GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMT
Sbjct: 319  LFVINKYFQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMT 378

Query: 1103 VSSFTRVPFGLESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVL 1282
            VSSFTRV FGLESVR EIQ+AKLE++F  KR+PTDEEII+KVGISPERY EVM ASKPV 
Sbjct: 379  VSSFTRVSFGLESVRAEIQKAKLEMIFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVS 438

Query: 1283 SLHSRHVVTQEEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLD 1462
            SLHSRH  TQEE+INGITDVDG E +N+R+               KPKESLVIRQR+GLD
Sbjct: 439  SLHSRHATTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLD 498

Query: 1463 GKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            GKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 499  GKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 544


>XP_009368680.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Pyrus x
            bretschneideri]
          Length = 519

 Score =  715 bits (1845), Expect = 0.0
 Identities = 371/519 (71%), Positives = 428/519 (82%), Gaps = 5/519 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETP 232
            MG+VT+S+SAAR+P+GLST   + RS  ++P IVAFK D+ +  ALVAP  +IPLPIET 
Sbjct: 1    MGVVTVSTSAARTPLGLSTKSTSQRSPFRKPWIVAFKTDESNKTALVAPQGKIPLPIETR 60

Query: 233  KQHQKRRGKGRTSPKRVKAVFTDEASPCT-LDVDYNEAAAKLENIYKRSPGIKIS-DVED 406
            K+HQKR GK R   K VK+  TD A+PCT L+VDYNEAAAKLEN+YKRSP I+   DVED
Sbjct: 61   KKHQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVED 120

Query: 407  TNGIVKRGQRRRKRTSEGE-EKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVT 583
             +G+++RG++RRK+TSE + EK +      VVR+  KK KRLNLDKR+ L+ NKDE+ V+
Sbjct: 121  ADGLLRRGRKRRKKTSESDHEKEEKRTSDIVVRSKTKKAKRLNLDKRVALKWNKDEKVVS 180

Query: 584  ELGKKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAF 763
             + K+KD K+  EKIE+L REYS+STDL SLDWKKMKIPPVL+S+EH WLFKLMQPMK  
Sbjct: 181  SVQKRKDQKNETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 764  LQVKEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKY 943
             +V+EQLQKDLG EPT+GELAEATNM   Q+KK  EVGRAARNKLIKHNLRLVLFVI KY
Sbjct: 241  HEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 944  FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRV 1123
            FQDFANGP+FQDLCQAGV+GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMTVSSFTRV
Sbjct: 301  FQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFTRV 360

Query: 1124 PFGLESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHV 1303
             FGLESVR EIQ+AKLE++F  KR+PTDEEII+KVGISPERY EVM ASKPV SLHSRH 
Sbjct: 361  SFGLESVRAEIQKAKLEMMFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVSSLHSRHA 420

Query: 1304 VTQEEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTL 1483
             TQEE+INGITDVDG E +N+R+               KPKESLVIRQR+GLDGKGDRTL
Sbjct: 421  TTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 1484 GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            GEIAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>XP_015878246.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Ziziphus jujuba]
          Length = 515

 Score =  711 bits (1834), Expect = 0.0
 Identities = 373/516 (72%), Positives = 421/516 (81%), Gaps = 2/516 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLSTI--THRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETP 232
            MG+VT+SSSAA++P+GLS    T++S SK+PLIVAFKADK +  ALVAP EQIPLPIE  
Sbjct: 1    MGVVTVSSSAAQTPLGLSPKFPTYQSISKKPLIVAFKADKFNETALVAPHEQIPLPIEAR 60

Query: 233  KQHQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKISDVEDTN 412
            K+HQKR GK     KRV A  TDEAS CTL+VDYNEAAAKLENIYK SP    SDVED  
Sbjct: 61   KEHQKRLGKVNKPSKRVNAAITDEASTCTLEVDYNEAAAKLENIYKLSPMTDASDVEDVG 120

Query: 413  GIVKRGQRRRKRTSEGEEKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVTELG 592
            G+  RG+RR+K+ S  +E+     G   VR+  KK KRLNLDKR+EL+KNK +E    + 
Sbjct: 121  GLKTRGRRRKKKISADDEEEKRTSGS-FVRSRRKKAKRLNLDKRVELKKNKVDEVNACVR 179

Query: 593  KKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAFLQV 772
            K+K+S   ++ IE L REYS+STDL SLDWKKMKIPPVL STEH WLFKLMQP+KA LQV
Sbjct: 180  KRKESISENDNIENLVREYSASTDLVSLDWKKMKIPPVLPSTEHAWLFKLMQPLKALLQV 239

Query: 773  KEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQD 952
             E L++ LGR+PT+GELAEATNM  AQ+K+ LEVGRAARNKLIKHNLRLVLFVI KYFQD
Sbjct: 240  NENLKQSLGRKPTEGELAEATNMSIAQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQD 299

Query: 953  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFG 1132
            FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT+SSF RV FG
Sbjct: 300  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFQRVSFG 359

Query: 1133 LESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHVVTQ 1312
            LESVR EIQ+AKLEL+FE KRLPT+EEII+KVGISPERY EVM ASK V SLHSRH VTQ
Sbjct: 360  LESVRAEIQKAKLELMFELKRLPTEEEIIEKVGISPERYNEVMRASKAVFSLHSRHAVTQ 419

Query: 1313 EEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEI 1492
            EEFI+GITDV+G E +N+RQ               KPKESLVIRQR+GLDG+GDRTLGEI
Sbjct: 420  EEFIDGITDVEGVEGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGRGDRTLGEI 479

Query: 1493 AGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            AGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 480  AGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 515


>XP_009357326.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Pyrus x
            bretschneideri]
          Length = 519

 Score =  710 bits (1833), Expect = 0.0
 Identities = 370/519 (71%), Positives = 426/519 (82%), Gaps = 5/519 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETP 232
            MG+VT+S+SAAR+P+GLST   + RS  ++P IVAFK D+ +  ALVAP   IPLPIET 
Sbjct: 1    MGVVTVSTSAARTPLGLSTKSTSQRSPFRKPWIVAFKTDESNKTALVAPQGNIPLPIETR 60

Query: 233  KQHQKRRGKGRTSPKRVKAVFTDEASPCT-LDVDYNEAAAKLENIYKRSPGIKIS-DVED 406
            K+ QKR GK R   K VK+  TD A+PCT L+VDYNEAAAKLEN+YKRSP I+   DVED
Sbjct: 61   KKLQKRIGKARKLAKSVKSTATDVAAPCTTLEVDYNEAAAKLENLYKRSPEIEADVDVED 120

Query: 407  TNGIVKRGQRRRKRTSEGE-EKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVT 583
             +G+++RG++RRK+TSE + EK +      VVR+  KK KRLNLDKR+ L+ NKDE+ V+
Sbjct: 121  ADGLLRRGRKRRKKTSESDHEKEEKRTSDIVVRSKTKKAKRLNLDKRVALKWNKDEKVVS 180

Query: 584  ELGKKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAF 763
             + K+KD K+  EKIE+L REYS+STDL SLDWKKMKIPPVL+S+EH WLFKLMQPMK  
Sbjct: 181  SVQKRKDQKNETEKIEELVREYSASTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGL 240

Query: 764  LQVKEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKY 943
             +V+EQLQKDLG EPT+GELAEATNM   Q+KK  EVGRAARNKLIKHNLRLVLFVI KY
Sbjct: 241  HEVREQLQKDLGTEPTNGELAEATNMSVVQVKKHFEVGRAARNKLIKHNLRLVLFVINKY 300

Query: 944  FQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRV 1123
            FQDFANGP+FQDLCQAGV+GLITAIDRFEPKR FRLSTYGLFWIRHAIIRSMTVSSFTRV
Sbjct: 301  FQDFANGPKFQDLCQAGVRGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTVSSFTRV 360

Query: 1124 PFGLESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHV 1303
             FGLESVR EIQ+AKLE++F  KR+PTDEEII+KVGISPERY EVM ASKPV SLHSRH 
Sbjct: 361  SFGLESVRAEIQKAKLEMIFSLKRMPTDEEIIEKVGISPERYHEVMRASKPVSSLHSRHA 420

Query: 1304 VTQEEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTL 1483
             TQEE+INGITDVDG E +N+R+               KPKESLVIRQR+GLDGKGDRTL
Sbjct: 421  TTQEEYINGITDVDGVEGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTL 480

Query: 1484 GEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            GEIAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  GEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 519


>XP_018838242.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Juglans regia]
            XP_018838243.1 PREDICTED: RNA polymerase sigma factor
            sigE, chloroplastic/mitochondrial-like [Juglans regia]
            XP_018838244.1 PREDICTED: RNA polymerase sigma factor
            sigE, chloroplastic/mitochondrial-like [Juglans regia]
          Length = 517

 Score =  707 bits (1824), Expect = 0.0
 Identities = 367/517 (70%), Positives = 419/517 (81%), Gaps = 3/517 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETP 232
            MG+VT+SSSA+R+P+GL     + RST KRPLIVAFKADK +  ALV   EQIPLPIET 
Sbjct: 1    MGVVTVSSSASRTPVGLGMKFSSQRSTLKRPLIVAFKADKSNTTALVTSQEQIPLPIETG 60

Query: 233  KQHQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKISDVEDTN 412
            K HQKR GK     +RVKAV TDEASPC L+VDYNEAAAKLEN+YK +P    S+ E+ +
Sbjct: 61   KDHQKRLGKANKKLRRVKAVLTDEASPCALEVDYNEAAAKLENLYKLTPAADASNEENID 120

Query: 413  GIVKRGQRRRKRTSEGEEK-TDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVTEL 589
            G+V++ + RR++T+  +EK  +      V++N   K KRL+LDKRI L+KNK +E V   
Sbjct: 121  GMVRKIRGRRRKTTGVDEKLVEKKASDNVIKNQTDKVKRLSLDKRIALKKNKQDEVVAPK 180

Query: 590  GKKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAFLQ 769
             K+KDS D   KIEKL REYS+STDL SLDWKKMKIPPVL S+EH WLFKLMQPMKA LQ
Sbjct: 181  RKRKDSTDESAKIEKLVREYSASTDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKALLQ 240

Query: 770  VKEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQ 949
            VKE LQKDLG+EPT+GELAEAT++   Q++K +EVGRAARNKLIKHNLRL+LFVI KYFQ
Sbjct: 241  VKENLQKDLGKEPTEGELAEATDIKAVQIRKLIEVGRAARNKLIKHNLRLILFVINKYFQ 300

Query: 950  DFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPF 1129
            DF+NGP+FQDLCQAGVKGLITAIDRFEPKR+F+LSTYGLFWIRHAIIRSMT+SSFTRV F
Sbjct: 301  DFSNGPKFQDLCQAGVKGLITAIDRFEPKRKFQLSTYGLFWIRHAIIRSMTLSSFTRVSF 360

Query: 1130 GLESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHVVT 1309
            GLESVR EIQRAKLEL FE  RLPT++EII+KVGISPERYREVM ASKPV+SLH RH  T
Sbjct: 361  GLESVRVEIQRAKLELSFELHRLPTEDEIIKKVGISPERYREVMRASKPVVSLHLRHPTT 420

Query: 1310 QEEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGE 1489
            QEE+INGITDVDG   +N RQ               KPKES+VIRQRFGLDGKGDRTLGE
Sbjct: 421  QEEYINGITDVDGCGGDNWRQHALLRLALDDVLDSLKPKESVVIRQRFGLDGKGDRTLGE 480

Query: 1490 IAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            IAGNLNISREMVRKHEVKALMKLKHP RVDYL QH+V
Sbjct: 481  IAGNLNISREMVRKHEVKALMKLKHPARVDYLRQHLV 517


>XP_011001910.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Populus euphratica]
          Length = 512

 Score =  703 bits (1815), Expect = 0.0
 Identities = 366/516 (70%), Positives = 427/516 (82%), Gaps = 2/516 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETP 232
            MG+V++SSSA+R+P+GLST   T+ ST+KRPLIVAFKADK  NP+ VAP EQIPLPIET 
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKADKSSNPSFVAPHEQIPLPIETT 60

Query: 233  KQHQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKISDVEDTN 412
            K  +KR GK + S  R+KAV T E SPCTL VDYNEAAAKLENIYK SPG   SDVED +
Sbjct: 61   KG-KKRLGKSKKSSNRLKAVRT-EVSPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDAS 118

Query: 413  GIVKRGQRRRKRTSEGEEKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVTELG 592
            G+++RG++R+++ SEG+++ +D   + +VRN  KK KRL+L+KRI LR   +E+ VT  G
Sbjct: 119  GVIRRGRQRKRKISEGDKEAEDRTSKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVTSAG 178

Query: 593  KKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAFLQV 772
            K+KD K+ +EKI++L REYS+STDL SLDWKKMKIPPVL+S+EH WLFKLMQPMKA LQV
Sbjct: 179  KRKDRKNENEKIDELLREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQV 238

Query: 773  KEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQD 952
            KE LQ++LGREPTD ELA+AT M   Q++K + VGRAARNKLIKHNLRLVLFVIKKYFQD
Sbjct: 239  KEHLQENLGREPTDVELAKATTMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQD 298

Query: 953  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFG 1132
            FANG +FQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT+SSFTRV FG
Sbjct: 299  FANGTKFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 358

Query: 1133 LESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHVVTQ 1312
            LES+R EIQ+AKLEL F+ KR P ++EII+KV ISPERY EV  ASKPVLSLHSRH  TQ
Sbjct: 359  LESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQ 418

Query: 1313 EEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEI 1492
            EEFI GI DVDG   +++RQ               KPKESLV+RQR+GLDGKGDRTLGEI
Sbjct: 419  EEFIGGIADVDG--GDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEI 476

Query: 1493 AGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            AGNLNISREMVRKHEVKALMKLKHPTRVDYL +++V
Sbjct: 477  AGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYVV 512


>XP_004308009.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Fragaria vesca subsp. vesca]
          Length = 520

 Score =  701 bits (1809), Expect = 0.0
 Identities = 363/520 (69%), Positives = 428/520 (82%), Gaps = 6/520 (1%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLST---ITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIET 229
            MG+VT+SSS +R+P+GLST    + RST ++PLIVAF+ DK    ALVAP E++PLPIET
Sbjct: 1    MGVVTVSSSVSRTPLGLSTNLVSSQRSTLRKPLIVAFRTDKSDKKALVAPQEKVPLPIET 60

Query: 230  PKQHQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKISDVEDT 409
             K+ QKR GK R  PK VKA   +EA  C L++DYNEAAAKLEN+YKRSP  + SDVE+ 
Sbjct: 61   GKKVQKRLGKARKLPKSVKAALIEEAPTCDLELDYNEAAAKLENLYKRSPETEASDVENV 120

Query: 410  NGI-VKRGQRRRKRTSEGEEKTDDGYGRP-VVRNLVKKPKRLNLDKRIELRKNKDEE-AV 580
            +G+ +KRG++RRK+ SE ++K +       VVR++ KK KRL+LDKR+ L+ NKDE+ A 
Sbjct: 121  DGLMIKRGRKRRKKISEVDDKVEKRTSDDIVVRSVTKKAKRLSLDKRVALKWNKDEKVAA 180

Query: 581  TELGKKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKA 760
            + + K+KD +  +E +E+L REYS+STDL SLDWKKM+IPPVLSS+EHTWLFKLMQPMK 
Sbjct: 181  SVVRKRKDKRSENEMMEELVREYSASTDLVSLDWKKMRIPPVLSSSEHTWLFKLMQPMKG 240

Query: 761  FLQVKEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKK 940
             L+VKE LQKDLGREP  GELAEATNM   Q+K+ LEVGRAARNKLIKHNLRLVLFVI K
Sbjct: 241  LLEVKEILQKDLGREPNKGELAEATNMTVVQVKRHLEVGRAARNKLIKHNLRLVLFVINK 300

Query: 941  YFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTR 1120
            YFQDFANGP+FQDLCQAGVKGLITAIDRFEP+RRFRLSTYGLFWIRHAIIRSMT+SSFTR
Sbjct: 301  YFQDFANGPKFQDLCQAGVKGLITAIDRFEPQRRFRLSTYGLFWIRHAIIRSMTLSSFTR 360

Query: 1121 VPFGLESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRH 1300
            V FGLESVR EIQ+AKLE+L + KR+PT++EII+KVGISPERY EVM ASKPV SL+SRH
Sbjct: 361  VSFGLESVRAEIQKAKLEMLVQLKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLNSRH 420

Query: 1301 VVTQEEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRT 1480
             VTQEEFINGITDVDG + +N+R+               KPKESLVIRQR+GLDGKGDRT
Sbjct: 421  SVTQEEFINGITDVDGVDGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRT 480

Query: 1481 LGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            LGEIAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  LGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYIV 520


>XP_006376620.1 RNA polymerase sigma subunit SigE family protein [Populus
            trichocarpa] ERP54417.1 RNA polymerase sigma subunit SigE
            family protein [Populus trichocarpa]
          Length = 512

 Score =  700 bits (1806), Expect = 0.0
 Identities = 364/516 (70%), Positives = 428/516 (82%), Gaps = 2/516 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETP 232
            MG+V++SSSA+R+P+GLST   T+ ST+KRPLIVAFKA+K +N +LVAP EQIPLP+ET 
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKANKSNNTSLVAPHEQIPLPVETT 60

Query: 233  KQHQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKISDVEDTN 412
            K  +KR GK + S  R+KAV T E SPCTL VDYNEAAAKLENIYK SPG   SDVED +
Sbjct: 61   KG-KKRLGKSKKSSNRLKAVRT-EVSPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDAS 118

Query: 413  GIVKRGQRRRKRTSEGEEKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVTELG 592
            G+++RG++R+++ SEG+++T+D  G+ +VRN  KK KRL+L+KRI LR   +E+ V+  G
Sbjct: 119  GVIRRGRQRKRKISEGDKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVSSAG 178

Query: 593  KKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAFLQV 772
            K+KD K+ +EKI+ L REYS+STDL SLDWKKMKIPPVL+S+EH WLFKLMQPMKA LQV
Sbjct: 179  KRKDRKNENEKIDDLVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQV 238

Query: 773  KEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQD 952
            KE LQ++LG EPTD ELA+ATNM   Q++K + VGRAARNKLIKHNLRLVLFVIKKYFQD
Sbjct: 239  KEHLQENLGGEPTDVELAKATNMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQD 298

Query: 953  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFG 1132
            FANG +FQD CQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT+SSFTRV FG
Sbjct: 299  FANGTKFQDFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 358

Query: 1133 LESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHVVTQ 1312
            LES+R EIQ+AKLEL F+ KR P ++EII+KV ISPERY EV  ASKPVLSLHSRH  TQ
Sbjct: 359  LESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQ 418

Query: 1313 EEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEI 1492
            EEFI GI DVDG   +++RQ               KPKESLV+RQR+GLDGKGDRTLGEI
Sbjct: 419  EEFIGGIADVDG--GDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEI 476

Query: 1493 AGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            AGNLNISREMVRKHEVKALMKLKHPTRVDYL +++V
Sbjct: 477  AGNLNISREMVRKHEVKALMKLKHPTRVDYLRRYVV 512


>OMO75948.1 RNA polymerase sigma-70 [Corchorus capsularis]
          Length = 516

 Score =  699 bits (1804), Expect = 0.0
 Identities = 362/517 (70%), Positives = 424/517 (82%), Gaps = 3/517 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAP-LEQIPLPIET 229
            MG+V++SSSAAR+P+GL +   T + TS+RPLIVAFKADK +N ALV P  + I LP+ET
Sbjct: 1    MGVVSVSSSAARTPLGLGSKFYTQKCTSRRPLIVAFKADKSNNTALVTPHQDHILLPLET 60

Query: 230  PKQHQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKISDVEDT 409
             K+  KRRGK + + K V  VFTDE SPCTL+VDYNEAAAKLENIYK SP    SDVE+ 
Sbjct: 61   AKEKPKRRGKAKKASKTVNRVFTDEVSPCTLEVDYNEAAAKLENIYKLSPSTTTSDVEEV 120

Query: 410  NGIVKRGQRRRKRTSEGEEKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVTEL 589
             G +K G+R RKR+ E +EK D+   + VV+N  KK KRL+LDKRI LR N++++ V  +
Sbjct: 121  EGKLKGGRRGRKRSKESDEKADES-NQIVVKNQTKKNKRLSLDKRIALRNNREKKHVVSV 179

Query: 590  GKKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAFLQ 769
             +KK  ++  EKI++L R+YS+STDL SLDWKKMKIPPVL STEHTWLFKLMQPMKA L+
Sbjct: 180  TRKKSHENESEKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSTEHTWLFKLMQPMKALLE 239

Query: 770  VKEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQ 949
             K++LQK+LGR+PT+ ELAEATNM  A++++ LEVGRAAR+KLIKHNLRLVLFVI KYFQ
Sbjct: 240  TKQELQKNLGRDPTEDELAEATNMSAAEVRRHLEVGRAARSKLIKHNLRLVLFVINKYFQ 299

Query: 950  DFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPF 1129
            DFANGPRFQDLCQAGVKGLITAIDRFEP+RRFRLSTYGLFWIRHAIIRSMT+SSFTRV F
Sbjct: 300  DFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 359

Query: 1130 GLESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHVVT 1309
            GLESVR EIQRAKLELLFE  R PT++EI++KVGISPERY+EVM ASK V SLHSRH VT
Sbjct: 360  GLESVRVEIQRAKLELLFELHREPTEDEIVKKVGISPERYQEVMRASKSVASLHSRHSVT 419

Query: 1310 QEEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGE 1489
            QEE I+GITDVDG   +++RQ               KPKESLVIRQR+GLDGKGDRTLGE
Sbjct: 420  QEELISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 479

Query: 1490 IAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            IAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 480  IAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>OMO56397.1 RNA polymerase sigma-70 [Corchorus olitorius]
          Length = 516

 Score =  699 bits (1804), Expect = 0.0
 Identities = 362/517 (70%), Positives = 424/517 (82%), Gaps = 3/517 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAP-LEQIPLPIET 229
            MG+V++SSSAAR+P+GL +   T + TS+RPLIVAFKADKP+N ALV P  + I LP+ET
Sbjct: 1    MGVVSVSSSAARTPLGLGSKFYTQKCTSRRPLIVAFKADKPNNTALVTPHQDHILLPLET 60

Query: 230  PKQHQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKISDVEDT 409
             K+  KRRGK + + K V  VFTDE SPCTL+VDYNEAAAKLENIYK SP    SDVE+ 
Sbjct: 61   AKEKPKRRGKAKKASKTVSRVFTDEVSPCTLEVDYNEAAAKLENIYKLSPSTTTSDVEEV 120

Query: 410  NGIVKRGQRRRKRTSEGEEKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVTEL 589
             G +K G+RRRKR+ E +EK D+   + VV+N  KK KRL+LDKRI L+  ++++ V  +
Sbjct: 121  EGKLKGGRRRRKRSKESDEKADES-NQIVVKNHTKKKKRLSLDKRIALKNYREKKHVVSV 179

Query: 590  GKKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAFLQ 769
             +KK  ++  EKI++L R+YS+STDL SLDWKKMKIPPVL STEHTWLFKLMQPMKA L+
Sbjct: 180  TRKKSYENESEKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSTEHTWLFKLMQPMKALLE 239

Query: 770  VKEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQ 949
              E+LQK+LGR+PT+ ELAEATNM  A++++ LEVGRAAR+KLIKHNLRLVLFVI KYFQ
Sbjct: 240  TTEELQKNLGRDPTEDELAEATNMSAAEVRRHLEVGRAARSKLIKHNLRLVLFVINKYFQ 299

Query: 950  DFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPF 1129
            DFANGPRFQDLCQAGVKGLITAIDRFEP+RRFRLSTYGLFWIRHAIIRSMT+SSFTRV F
Sbjct: 300  DFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 359

Query: 1130 GLESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHVVT 1309
            GLESVR EIQRAKLELLFE  R PT++EI++KVGISPERY+EVM ASK V SLHSRH VT
Sbjct: 360  GLESVRVEIQRAKLELLFELHREPTEDEIVKKVGISPERYQEVMRASKSVASLHSRHSVT 419

Query: 1310 QEEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGE 1489
            QEE I+GITDVDG   +++RQ               KPKESLVIRQR+GLDGKGDRTLGE
Sbjct: 420  QEELISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 479

Query: 1490 IAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            IAGNLNISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 480  IAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>XP_016737339.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Gossypium hirsutum]
          Length = 516

 Score =  694 bits (1790), Expect = 0.0
 Identities = 361/516 (69%), Positives = 415/516 (80%), Gaps = 2/516 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETP 232
            MG+V++SSSAAR+P+GL T   T R T +RP IVAFKADK +N ALV   +   LP+ET 
Sbjct: 1    MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIVAFKADKSNNTALVTLRDHNLLPVETA 60

Query: 233  KQHQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKISDVEDTN 412
            K+H KRRGK + + K V   FTDE SP T+DVDYNEAAAKLENIYK SP  +  D + + 
Sbjct: 61   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 120

Query: 413  GIVKRGQRRRKRTSEGEEKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVTELG 592
            G  K  Q RRKR+ E + K D+G  + VVR+  KK +RL LDKRIEL+KN++E++V    
Sbjct: 121  GETKGRQLRRKRSKESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 180

Query: 593  KKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAFLQV 772
             KK   +  EKI++L R+YS+STDL SLDWKKMKIPPVL STEHTWLFKLMQPMKA L+ 
Sbjct: 181  SKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSTEHTWLFKLMQPMKALLEA 240

Query: 773  KEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQD 952
            KE LQKDLGR+PT+ ELAEATN   AQ+++ LEVGRAARNKLIKHNLRLVLFVIKKYFQD
Sbjct: 241  KENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVIKKYFQD 300

Query: 953  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFG 1132
            FANGPRFQDLCQAGVKGLITAIDRFEP+RRFRLSTYGLFWIRHAIIRSMT+SSFTRV FG
Sbjct: 301  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 360

Query: 1133 LESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHVVTQ 1312
            LESVR EIQRAKLELLFE  R PTD+E+I++VGISPERY+EVM ASKPV SLH RH VTQ
Sbjct: 361  LESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASLHLRHSVTQ 420

Query: 1313 EEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEI 1492
            EEFI+GITDVDG   +++RQ               KPKESLVIRQR+GLDGKGDRTLGEI
Sbjct: 421  EEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 480

Query: 1493 AGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            AGNL+ISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  AGNLSISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>XP_011007924.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Populus euphratica]
          Length = 513

 Score =  693 bits (1789), Expect = 0.0
 Identities = 364/517 (70%), Positives = 424/517 (82%), Gaps = 3/517 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETP 232
            MGIV++SSSA+ +P+G ST   T RST+KRPLIVAFKADK +  ALVAP EQIPLPIET 
Sbjct: 1    MGIVSVSSSASWTPLGFSTKFTTCRSTAKRPLIVAFKADKSNETALVAPHEQIPLPIETT 60

Query: 233  KQHQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKISDVEDTN 412
            K+ +KR GK + S  R+KAV T E SPCTL VDYNEAAAKLENIYK SPG   SDVED N
Sbjct: 61   KE-EKRHGKSKKSSNRLKAVRT-EVSPCTLGVDYNEAAAKLENIYKLSPGTDTSDVEDVN 118

Query: 413  GIVKRGQRRRKRTSEGEEKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVTELG 592
            G+++R ++R+++TSE E++ D    + +VRN  KK KRL+L KRI LR   DE+ VT +G
Sbjct: 119  GVLRRCRQRKRKTSECEKEDDGRTSKIIVRNQAKKAKRLSLQKRIALRIKSDEKLVTSVG 178

Query: 593  KKKDSKDAHEKIEKLFR-EYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAFLQ 769
            K+K  K+ +EKI++L R EYSSSTDL SLDWKKMKIPPVL+S EH WLFKLMQPMKA LQ
Sbjct: 179  KRKGRKNENEKIDELVRGEYSSSTDLASLDWKKMKIPPVLTSAEHAWLFKLMQPMKASLQ 238

Query: 770  VKEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQ 949
            VKE LQ++ GREPT+GELAEAT+M   Q++K +EVGRAARNKLIKHNLRLVLFVI KYFQ
Sbjct: 239  VKEHLQENSGREPTEGELAEATDMDVLQVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQ 298

Query: 950  DFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPF 1129
            D+ANGPR+QDLCQAGVKGL+TAIDRFEPKRRFRLSTYGLFWIRHAIIRSMT+SSFTRV F
Sbjct: 299  DYANGPRYQDLCQAGVKGLMTAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 358

Query: 1130 GLESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHVVT 1309
            GLES+R EIQ+AKLEL F+ +R PT EEII+KVGIS +RY EV  ASKPVLSLHS+H  T
Sbjct: 359  GLESIRSEIQKAKLELWFQLQRKPTGEEIIEKVGISIQRYHEVTRASKPVLSLHSKHKTT 418

Query: 1310 QEEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGE 1489
            QEE I+G+ DV+G   +++RQ               KPKESLV+RQRFGLDGKGDRTLGE
Sbjct: 419  QEELISGVADVNG--GDDRRQSALLRLALDDVLDSLKPKESLVVRQRFGLDGKGDRTLGE 476

Query: 1490 IAGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            IAGNLNISREMVRKHE KALMKLKHPTRVDYLC+++V
Sbjct: 477  IAGNLNISREMVRKHEAKALMKLKHPTRVDYLCRYVV 513


>XP_012440029.1 PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial [Gossypium raimondii]
            XP_012440030.1 PREDICTED: RNA polymerase sigma factor
            sigE, chloroplastic/mitochondrial [Gossypium raimondii]
            KJB52623.1 hypothetical protein B456_008G270500
            [Gossypium raimondii] KJB52624.1 hypothetical protein
            B456_008G270500 [Gossypium raimondii]
          Length = 516

 Score =  692 bits (1787), Expect = 0.0
 Identities = 360/516 (69%), Positives = 415/516 (80%), Gaps = 2/516 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETP 232
            MG+V++SSSAAR+P+GL T   T R T +RP IVAFKADK +N ALV   +   LP+ET 
Sbjct: 1    MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIVAFKADKSNNTALVTLRDHNLLPVETA 60

Query: 233  KQHQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKISDVEDTN 412
            K+H KRRGK + + K V   FTDE SP T+DVDYNEAAAKLENIYK SP  +  D + + 
Sbjct: 61   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 120

Query: 413  GIVKRGQRRRKRTSEGEEKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVTELG 592
            G  K  Q RRKR+ E + K D+G  + VVR+  KK +RL LDKRIEL+KN++E++V    
Sbjct: 121  GETKGRQLRRKRSKESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 180

Query: 593  KKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAFLQV 772
             KK   +  EKI++L R+YS+STDL SLDWKKMK+PPVL STEHTWLFKLMQPMKA L+ 
Sbjct: 181  SKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKMPPVLPSTEHTWLFKLMQPMKALLEA 240

Query: 773  KEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQD 952
            KE LQKDLGR+PT+ ELAEATN   AQ+++ LEVGRAARNKLIKHNLRLVLFVIKKYFQD
Sbjct: 241  KENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVIKKYFQD 300

Query: 953  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFG 1132
            FANGPRFQDLCQAGVKGLITAIDRFEP+RRFRLSTYGLFWIRHAIIRSMT+SSFTRV FG
Sbjct: 301  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 360

Query: 1133 LESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHVVTQ 1312
            LESVR EIQRAKLELLFE  R PTD+E+I++VGISPERY+EVM ASKPV SLH RH VTQ
Sbjct: 361  LESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASLHLRHSVTQ 420

Query: 1313 EEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEI 1492
            EEFI+GITDVDG   +++RQ               KPKESLVIRQR+GLDGKGDRTLGEI
Sbjct: 421  EEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 480

Query: 1493 AGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            AGNL+ISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 481  AGNLSISREMVRKHEVKALMKLKHPARVDYLRRYVV 516


>KJB52622.1 hypothetical protein B456_008G270500 [Gossypium raimondii]
          Length = 547

 Score =  692 bits (1787), Expect = 0.0
 Identities = 360/516 (69%), Positives = 415/516 (80%), Gaps = 2/516 (0%)
 Frame = +2

Query: 59   MGIVTISSSAARSPIGLST--ITHRSTSKRPLIVAFKADKPHNPALVAPLEQIPLPIETP 232
            MG+V++SSSAAR+P+GL T   T R T +RP IVAFKADK +N ALV   +   LP+ET 
Sbjct: 32   MGVVSVSSSAARTPVGLGTKFSTQRCTFRRPCIVAFKADKSNNTALVTLRDHNLLPVETA 91

Query: 233  KQHQKRRGKGRTSPKRVKAVFTDEASPCTLDVDYNEAAAKLENIYKRSPGIKISDVEDTN 412
            K+H KRRGK + + K V   FTDE SP T+DVDYNEAAAKLENIYK SP  +  D + + 
Sbjct: 92   KEHPKRRGKAKKASKTVNRDFTDEGSPYTVDVDYNEAAAKLENIYKLSPSTQTFDEKGSE 151

Query: 413  GIVKRGQRRRKRTSEGEEKTDDGYGRPVVRNLVKKPKRLNLDKRIELRKNKDEEAVTELG 592
            G  K  Q RRKR+ E + K D+G  + VVR+  KK +RL LDKRIEL+KN++E++V    
Sbjct: 152  GETKGRQLRRKRSKESDGKADNGDDKIVVRSQTKKNRRLGLDKRIELKKNREEKSVVSGQ 211

Query: 593  KKKDSKDAHEKIEKLFREYSSSTDLGSLDWKKMKIPPVLSSTEHTWLFKLMQPMKAFLQV 772
             KK   +  EKI++L R+YS+STDL SLDWKKMK+PPVL STEHTWLFKLMQPMKA L+ 
Sbjct: 212  SKKGISNESEKIDRLVRDYSASTDLVSLDWKKMKMPPVLPSTEHTWLFKLMQPMKALLEA 271

Query: 773  KEQLQKDLGREPTDGELAEATNMCTAQLKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQD 952
            KE LQKDLGR+PT+ ELAEATN   AQ+++ LEVGRAARNKLIKHNLRLVLFVIKKYFQD
Sbjct: 272  KENLQKDLGRDPTEDELAEATNSSAAQVRRQLEVGRAARNKLIKHNLRLVLFVIKKYFQD 331

Query: 953  FANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFG 1132
            FANGPRFQDLCQAGVKGLITAIDRFEP+RRFRLSTYGLFWIRHAIIRSMT+SSFTRV FG
Sbjct: 332  FANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFG 391

Query: 1133 LESVRGEIQRAKLELLFEHKRLPTDEEIIQKVGISPERYREVMMASKPVLSLHSRHVVTQ 1312
            LESVR EIQRAKLELLFE  R PTD+E+I++VGISPERY+EVM ASKPV SLH RH VTQ
Sbjct: 392  LESVRVEIQRAKLELLFELHREPTDDEVIKRVGISPERYQEVMRASKPVASLHLRHSVTQ 451

Query: 1313 EEFINGITDVDGFENENQRQXXXXXXXXXXXXXXXKPKESLVIRQRFGLDGKGDRTLGEI 1492
            EEFI+GITDVDG   +++RQ               KPKESLVIRQR+GLDGKGDRTLGEI
Sbjct: 452  EEFISGITDVDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEI 511

Query: 1493 AGNLNISREMVRKHEVKALMKLKHPTRVDYLCQHMV 1600
            AGNL+ISREMVRKHEVKALMKLKHP RVDYL +++V
Sbjct: 512  AGNLSISREMVRKHEVKALMKLKHPARVDYLRRYVV 547