BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Phellodendron21_contig00000695
         (1673 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KDO66627.1 hypothetical protein CISIN_1g015442mg [Citrus sinensis]    573   0.0  
XP_006424899.1 hypothetical protein CICLE_v10028561mg [Citrus cl...   571   0.0  
KDO66626.1 hypothetical protein CISIN_1g015442mg [Citrus sinensis]    521   e-180
XP_007016334.2 PREDICTED: transcription initiation factor IIA la...   494   e-169
EOY33953.1 Transcription initiation factor IIA subunit 1 [Theobr...   494   e-169
KDO66628.1 hypothetical protein CISIN_1g015442mg [Citrus sinensis]    493   e-169
XP_017983002.1 PREDICTED: transcription initiation factor IIA la...   481   e-163
OMO61981.1 Transcription factor IIA, alpha/beta subunit [Corchor...   475   e-162
XP_012446718.1 PREDICTED: transcription initiation factor IIA la...   471   e-160
XP_016751701.1 PREDICTED: transcription initiation factor IIA la...   469   e-159
OMO91164.1 Transcription factor IIA, alpha/beta subunit [Corchor...   469   e-159
XP_017647079.1 PREDICTED: transcription initiation factor IIA la...   468   e-159
OAY61177.1 hypothetical protein MANES_01G169400 [Manihot esculenta]   468   e-159
XP_017612850.1 PREDICTED: transcription initiation factor IIA la...   467   e-158
GAV78305.1 TFIIA domain-containing protein [Cephalotus follicula...   467   e-158
XP_016750614.1 PREDICTED: transcription initiation factor IIA la...   466   e-158
XP_012475136.1 PREDICTED: transcription initiation factor IIA la...   465   e-158
XP_016745211.1 PREDICTED: transcription initiation factor IIA la...   463   e-157
XP_012066966.1 PREDICTED: transcription initiation factor IIA la...   463   e-157
XP_018820031.1 PREDICTED: transcription initiation factor IIA la...   455   e-154

>KDO66627.1 hypothetical protein CISIN_1g015442mg [Citrus sinensis]
          Length = 406

 Score =  573 bits (1477), Expect = 0.0
 Identities = 306/409 (74%), Positives = 313/409 (76%), Gaps = 13/409 (3%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQARVVGGPIDRSS 1398
            MATS T MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA V+   IDR+S
Sbjct: 1    MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57

Query: 1397 APKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGSTP 1218
            APKQ APGGPITPVHDLNV             E                PGSTPLPGSTP
Sbjct: 58   APKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 117

Query: 1217 LPGS------ADNSLYNIPTGSSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMNQR 1056
            LPGS      ADNS YNIPTGSSDYPTPASDSGGN EAK GNGR          PWMN R
Sbjct: 118  LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177

Query: 1055 TPLSVDVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDG 876
             PLSVDVNVAYVEGRDEADRGTSHQP TQDFF MSAGKRKREDFPAQYHNGGYNIPQQDG
Sbjct: 178  PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237

Query: 875  AGDATSEIFELEVSQ-------GTIANRQILAHLASSSTKIPQLDGPIPDPYDDVLSTPN 717
            AGDA SEIFELEVS+        T ANR+I A+LASSS KIPQLDGPIPDPYDDVLSTPN
Sbjct: 238  AGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPN 297

Query: 716  IYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVAXXXXXXXXXXXXXXXXXXXXXXX 537
            IYNYQGVVNEDYNIVNTPAPND+QASTPAVVTQND A                       
Sbjct: 298  IYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGE 357

Query: 536  XLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
             LNTQHLVLAQFDKVTRTKS+WKCALKDGIMHINNKDILFNKATGEFDF
Sbjct: 358  ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406


>XP_006424899.1 hypothetical protein CICLE_v10028561mg [Citrus clementina]
            XP_006488381.1 PREDICTED: transcription initiation factor
            IIA subunit 1 [Citrus sinensis] ESR38139.1 hypothetical
            protein CICLE_v10028561mg [Citrus clementina]
          Length = 406

 Score =  571 bits (1472), Expect = 0.0
 Identities = 305/409 (74%), Positives = 312/409 (76%), Gaps = 13/409 (3%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQARVVGGPIDRSS 1398
            MATS T MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA V+   IDR+S
Sbjct: 1    MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57

Query: 1397 APKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGSTP 1218
            APKQ APGGPITPVHDLNV             E                PGSTPLPGSTP
Sbjct: 58   APKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 117

Query: 1217 LPGS------ADNSLYNIPTGSSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMNQR 1056
            LPGS      ADNS YNIPTGSSDYPTPASDSGGN EAK GNGR          PWMN R
Sbjct: 118  LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177

Query: 1055 TPLSVDVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDG 876
             PLSVDVNVAYVEGRDEADRGTSHQP TQDFF MSAGKRKREDFPAQYHNGGYNIPQQDG
Sbjct: 178  PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237

Query: 875  AGDATSEIFELEVSQ-------GTIANRQILAHLASSSTKIPQLDGPIPDPYDDVLSTPN 717
            AGDA  EIFELEVS+        T ANR+I A+LASSS KIPQLDGPIPDPYDDVLSTPN
Sbjct: 238  AGDAMPEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPN 297

Query: 716  IYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVAXXXXXXXXXXXXXXXXXXXXXXX 537
            IYNYQGVVNEDYNIVNTPAPND+QASTPAVVTQND A                       
Sbjct: 298  IYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGE 357

Query: 536  XLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
             LNTQHLVLAQFDKVTRTKS+WKCALKDGIMHINNKDILFNKATGEFDF
Sbjct: 358  ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 406


>KDO66626.1 hypothetical protein CISIN_1g015442mg [Citrus sinensis]
          Length = 386

 Score =  521 bits (1342), Expect = e-180
 Identities = 286/409 (69%), Positives = 293/409 (71%), Gaps = 13/409 (3%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQARVVGGPIDRSS 1398
            MATS T MVYIRVIEDVISK                    IWEMKMIQA V+   IDR+S
Sbjct: 1    MATSATGMVYIRVIEDVISK--------------------IWEMKMIQAGVI---IDRTS 37

Query: 1397 APKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGSTP 1218
            APKQ APGGPITPVHDLNV             E                PGSTPLPGSTP
Sbjct: 38   APKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 97

Query: 1217 LPGS------ADNSLYNIPTGSSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMNQR 1056
            LPGS      ADNS YNIPTGSSDYPTPASDSGGN EAK GNGR          PWMN R
Sbjct: 98   LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 157

Query: 1055 TPLSVDVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDG 876
             PLSVDVNVAYVEGRDEADRGTSHQP TQDFF MSAGKRKREDFPAQYHNGGYNIPQQDG
Sbjct: 158  PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 217

Query: 875  AGDATSEIFELEVSQ-------GTIANRQILAHLASSSTKIPQLDGPIPDPYDDVLSTPN 717
            AGDA SEIFELEVS+        T ANR+I A+LASSS KIPQLDGPIPDPYDDVLSTPN
Sbjct: 218  AGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPN 277

Query: 716  IYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVAXXXXXXXXXXXXXXXXXXXXXXX 537
            IYNYQGVVNEDYNIVNTPAPND+QASTPAVVTQND A                       
Sbjct: 278  IYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGE 337

Query: 536  XLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
             LNTQHLVLAQFDKVTRTKS+WKCALKDGIMHINNKDILFNKATGEFDF
Sbjct: 338  ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386


>XP_007016334.2 PREDICTED: transcription initiation factor IIA large subunit isoform
            X2 [Theobroma cacao]
          Length = 393

 Score =  494 bits (1273), Expect = e-169
 Identities = 268/408 (65%), Positives = 289/408 (70%), Gaps = 12/408 (2%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDRS 1401
            MA+S TS VYI VIEDVI+KVRDEF+NNG PGE+VLNELQGIWEMKM+QA VV GPI+RS
Sbjct: 1    MASSTTSAVYIHVIEDVINKVRDEFINNGGPGETVLNELQGIWEMKMMQAGVVCGPIERS 60

Query: 1400 SAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1221
            S  KQ  PGGPITPVHDLNV             +                   TP+P  T
Sbjct: 61   SGQKQPTPGGPITPVHDLNVPYEGPEEYETPTADMLFPPTPL----------QTPVP--T 108

Query: 1220 PLPGSADNSLYNIPTGSSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMNQRTPLSV 1041
            PLPGSAD S+YNIPTGSSDYPTP +D GGN +AKG              PW NQRTPLSV
Sbjct: 109  PLPGSADGSMYNIPTGSSDYPTPVNDGGGNTDAKGAR---PSPYMQSPSPWPNQRTPLSV 165

Query: 1040 DVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAT 861
            DVNVAYVEGRDE DRG SHQP TQDFFMMS+GKRKREDF  QYHNGG  IPQQDGAGDA 
Sbjct: 166  DVNVAYVEGRDEVDRGPSHQPLTQDFFMMSSGKRKREDFTTQYHNGGGYIPQQDGAGDAI 225

Query: 860  SEIFELEVSQG----------TIANRQILAHLASSSTKIPQLDGPIPDPYDDVLSTPNIY 711
             E+ + E S+G          T A  +ILAHLA SS+KIPQLDGPIPDPYDD+LSTPNIY
Sbjct: 226  YEVAKAEGSKGSDFLDRRDSTTTAKSEILAHLARSSSKIPQLDGPIPDPYDDMLSTPNIY 285

Query: 710  NYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVA-XXXXXXXXXXXXXXXXXXXXXXXX 534
            NYQGVVNEDYN+VNTPAPNDLQA+TPA V QND                           
Sbjct: 286  NYQGVVNEDYNVVNTPAPNDLQAATPAPVAQNDTGDDDDDEPLNEDDDDDELDDVDQGEE 345

Query: 533  LNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
            LNTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 346  LNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 393


>EOY33953.1 Transcription initiation factor IIA subunit 1 [Theobroma cacao]
          Length = 393

 Score =  494 bits (1273), Expect = e-169
 Identities = 268/408 (65%), Positives = 289/408 (70%), Gaps = 12/408 (2%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDRS 1401
            MA+S TS VYI VIEDVI+KVRDEF+NNG PGE+VLNELQGIWEMKM+QA VV GPI+RS
Sbjct: 1    MASSTTSAVYIHVIEDVINKVRDEFINNGGPGETVLNELQGIWEMKMMQAGVVCGPIERS 60

Query: 1400 SAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1221
            S  KQ  PGGPITPVHDLNV             +                   TP+P  T
Sbjct: 61   SGQKQPTPGGPITPVHDLNVPYEGPEEYETPTADMLFPPTPL----------QTPVP--T 108

Query: 1220 PLPGSADNSLYNIPTGSSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMNQRTPLSV 1041
            PLPGSAD S+YNIPTGSSDYPTP +D GGN +AKG              PW NQRTPLSV
Sbjct: 109  PLPGSADGSMYNIPTGSSDYPTPVTDGGGNTDAKGAR---PSPYMQSPSPWPNQRTPLSV 165

Query: 1040 DVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAT 861
            DVNVAYVEGRDE DRG SHQP TQDFFMMS+GKRKREDF  QYHNGG  IPQQDGAGDA 
Sbjct: 166  DVNVAYVEGRDEVDRGPSHQPLTQDFFMMSSGKRKREDFTTQYHNGGGYIPQQDGAGDAI 225

Query: 860  SEIFELEVSQG----------TIANRQILAHLASSSTKIPQLDGPIPDPYDDVLSTPNIY 711
             E+ + E S+G          T A  +ILAHLA SS+KIPQLDGPIPDPYDD+LSTPNIY
Sbjct: 226  YEVAKAEGSKGSDFLDRRDSTTTAKSEILAHLARSSSKIPQLDGPIPDPYDDMLSTPNIY 285

Query: 710  NYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVA-XXXXXXXXXXXXXXXXXXXXXXXX 534
            NYQGVVNEDYN+VNTPAPNDLQA+TPA V QND                           
Sbjct: 286  NYQGVVNEDYNVVNTPAPNDLQAATPAPVAQNDTGDDDDDEPLNEDDDDDELDDVDQGEE 345

Query: 533  LNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
            LNTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 346  LNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 393


>KDO66628.1 hypothetical protein CISIN_1g015442mg [Citrus sinensis]
          Length = 363

 Score =  493 bits (1269), Expect = e-169
 Identities = 265/366 (72%), Positives = 272/366 (74%), Gaps = 13/366 (3%)
 Frame = -1

Query: 1448 MKMIQARVVGGPIDRSSAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXX 1269
            MKMIQA V+   IDR+SAPKQ APGGPITPVHDLNV             E          
Sbjct: 1    MKMIQAGVI---IDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQT 57

Query: 1268 XXXXXXPGSTPLPGSTPLPGS------ADNSLYNIPTGSSDYPTPASDSGGNAEAKGGNG 1107
                  PGSTPLPGSTPLPGS      ADNS YNIPTGSSDYPTPASDSGGN EAK GNG
Sbjct: 58   PIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNG 117

Query: 1106 RXXXXXXXXXXPWMNQRTPLSVDVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKRED 927
            R          PWMN R PLSVDVNVAYVEGRDEADRGTSHQP TQDFF MSAGKRKRED
Sbjct: 118  RPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKRED 177

Query: 926  FPAQYHNGGYNIPQQDGAGDATSEIFELEVSQ-------GTIANRQILAHLASSSTKIPQ 768
            FPAQYHNGGYNIPQQDGAGDA SEIFELEVS+        T ANR+I A+LASSS KIPQ
Sbjct: 178  FPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQ 237

Query: 767  LDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVAXXXXXX 588
            LDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPND+QASTPAVVTQND A      
Sbjct: 238  LDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE 297

Query: 587  XXXXXXXXXXXXXXXXXXLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKA 408
                              LNTQHLVLAQFDKVTRTKS+WKCALKDGIMHINNKDILFNKA
Sbjct: 298  PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 357

Query: 407  TGEFDF 390
            TGEFDF
Sbjct: 358  TGEFDF 363


>XP_017983002.1 PREDICTED: transcription initiation factor IIA large subunit isoform
            X1 [Theobroma cacao]
          Length = 418

 Score =  481 bits (1237), Expect = e-163
 Identities = 268/433 (61%), Positives = 289/433 (66%), Gaps = 37/433 (8%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDRS 1401
            MA+S TS VYI VIEDVI+KVRDEF+NNG PGE+VLNELQGIWEMKM+QA VV GPI+RS
Sbjct: 1    MASSTTSAVYIHVIEDVINKVRDEFINNGGPGETVLNELQGIWEMKMMQAGVVCGPIERS 60

Query: 1400 SAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1221
            S  KQ  PGGPITPVHDLNV             +                   TP+P  T
Sbjct: 61   SGQKQPTPGGPITPVHDLNVPYEGPEEYETPTADMLFPPTPL----------QTPVP--T 108

Query: 1220 PLPGSADNSLYNIPTGSSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMNQRTPLSV 1041
            PLPGSAD S+YNIPTGSSDYPTP +D GGN +AKG              PW NQRTPLSV
Sbjct: 109  PLPGSADGSMYNIPTGSSDYPTPVNDGGGNTDAKGAR---PSPYMQSPSPWPNQRTPLSV 165

Query: 1040 DVNV-------------------------AYVEGRDEADRGTSHQPPTQDFFMMSAGKRK 936
            DVNV                         AYVEGRDE DRG SHQP TQDFFMMS+GKRK
Sbjct: 166  DVNVGEYVIKRAISSNPLRFVNNKCYFLVAYVEGRDEVDRGPSHQPLTQDFFMMSSGKRK 225

Query: 935  REDFPAQYHNGGYNIPQQDGAGDATSEIFELEVSQG----------TIANRQILAHLASS 786
            REDF  QYHNGG  IPQQDGAGDA  E+ + E S+G          T A  +ILAHLA S
Sbjct: 226  REDFTTQYHNGGGYIPQQDGAGDAIYEVAKAEGSKGSDFLDRRDSTTTAKSEILAHLARS 285

Query: 785  STKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVA 606
            S+KIPQLDGPIPDPYDD+LSTPNIYNYQGVVNEDYN+VNTPAPNDLQA+TPA V QND  
Sbjct: 286  SSKIPQLDGPIPDPYDDMLSTPNIYNYQGVVNEDYNVVNTPAPNDLQAATPAPVAQNDTG 345

Query: 605  -XXXXXXXXXXXXXXXXXXXXXXXXLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNK 429
                                     LNTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNK
Sbjct: 346  DDDDDEPLNEDDDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNK 405

Query: 428  DILFNKATGEFDF 390
            DILFNKATGEFDF
Sbjct: 406  DILFNKATGEFDF 418


>OMO61981.1 Transcription factor IIA, alpha/beta subunit [Corchorus capsularis]
          Length = 392

 Score =  475 bits (1223), Expect = e-162
 Identities = 260/410 (63%), Positives = 284/410 (69%), Gaps = 14/410 (3%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDRS 1401
            MA+S TS VYI VIEDVISKVRDEF+NNG PGE+VLNELQGIWEMKM++A V+ GPIDRS
Sbjct: 1    MASSTTSAVYIHVIEDVISKVRDEFINNGGPGEAVLNELQGIWEMKMMRAGVICGPIDRS 60

Query: 1400 SAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPL--PG 1227
            S  KQ  PGGPITPVHDLNV             +                   TPL  P 
Sbjct: 61   SGQKQPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPP--------------TPLQTPA 106

Query: 1226 STPLPGSADNSLYNIPTGSSDYPTPASD-SGGNAEAKGGNGRXXXXXXXXXXPWMNQRTP 1050
             TPLPGSAD S+YNIPTGSSDYPTP +D SGGN + KG              PW NQRTP
Sbjct: 107  PTPLPGSADGSMYNIPTGSSDYPTPVNDNSGGNTDVKGAR---PSPYAQSPSPWPNQRTP 163

Query: 1049 LSVDVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDGAG 870
            LSVDVNVAYVEGR+E DRGTS+QP TQDFF MSAGKRKREDF  QYHN GY IPQQDGAG
Sbjct: 164  LSVDVNVAYVEGREEGDRGTSNQPLTQDFFTMSAGKRKREDFATQYHNSGY-IPQQDGAG 222

Query: 869  DATSEIFELEVSQG----------TIANRQILAHLASSSTKIPQLDGPIPDPYDDVLSTP 720
            D TSE+  LE S+G          T    ++ A   +SS+KIPQ DGPIPDPYDD+LSTP
Sbjct: 223  DVTSEVTNLEGSKGDNDLDRCYSATTEKIKVEAPSVTSSSKIPQQDGPIPDPYDDMLSTP 282

Query: 719  NIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVAXXXXXXXXXXXXXXXXXXXXXX 540
            NIYNYQGVVNEDYN+VNTPAPNDLQA+TPA V QND                        
Sbjct: 283  NIYNYQGVVNEDYNVVNTPAPNDLQAATPAPVPQNDTGDDDDDEPLNEDDDDDLDDVDQG 342

Query: 539  XXLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
              +NT HLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 343  EDMNTAHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 392


>XP_012446718.1 PREDICTED: transcription initiation factor IIA large subunit
            [Gossypium raimondii] KJB55819.1 hypothetical protein
            B456_009G096500 [Gossypium raimondii]
          Length = 391

 Score =  471 bits (1213), Expect = e-160
 Identities = 254/407 (62%), Positives = 280/407 (68%), Gaps = 11/407 (2%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDRS 1401
            M +S TS VYI VIEDVISKVRDEF+NNG PGE+VLNELQG+WE KM+QA  + GPI+RS
Sbjct: 1    MTSSTTSAVYIHVIEDVISKVRDEFINNGGPGEAVLNELQGLWETKMMQAGAICGPIERS 60

Query: 1400 SAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1221
            +  KQ   GGPITPVHDLNV             +                   TP+P  T
Sbjct: 61   TGQKQPTAGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPL----------QTPVP--T 108

Query: 1220 PLPGSADNSLYNIPTGSSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMNQRTPLSV 1041
            PLPGSAD S+YNIPTGSSDYPTP +D   NA+ KGG             PW NQRTPLSV
Sbjct: 109  PLPGSADGSMYNIPTGSSDYPTPVNDGASNADVKGGR---PSPYMQSPSPWSNQRTPLSV 165

Query: 1040 DVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAT 861
            DVNVAYVEGRDE DRGTS+QP TQDFFMM  GKRKREDF  QY+NGGY IPQQDGAGD+T
Sbjct: 166  DVNVAYVEGRDEVDRGTSNQPLTQDFFMMPPGKRKREDFATQYNNGGY-IPQQDGAGDST 224

Query: 860  SEIFELEVSQG----------TIANRQILAHLASSSTKIPQLDGPIPDPYDDVLSTPNIY 711
            SE+ + E S+G          T     ILAH A+SS KI QLDGPIPDP++D+LSTPNIY
Sbjct: 225  SEVAKTEGSKGCNFLGRHDSATTGKTNILAHFATSSLKISQLDGPIPDPFEDMLSTPNIY 284

Query: 710  NYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVAXXXXXXXXXXXXXXXXXXXXXXXXL 531
            NYQGVV EDYN+ NTPAPNDLQA+TPA V QND                          L
Sbjct: 285  NYQGVVGEDYNVANTPAPNDLQAATPAPVAQNDTGDDDDDEPLNEDDDDDDLDDVDQEEL 344

Query: 530  NTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
            NTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 345  NTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 391


>XP_016751701.1 PREDICTED: transcription initiation factor IIA large subunit-like
            [Gossypium hirsutum]
          Length = 390

 Score =  469 bits (1207), Expect = e-159
 Identities = 260/408 (63%), Positives = 289/408 (70%), Gaps = 12/408 (2%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDRS 1401
            MA++ TS VYI VIEDVI+KVR+EF+NNG PGE+VLNELQGIWE KM+QA V+ GPI+RS
Sbjct: 1    MASTTTSSVYINVIEDVINKVREEFINNGGPGEAVLNELQGIWEAKMMQAGVILGPIERS 60

Query: 1400 SAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1221
            S  KQ  PG  ITPVHDLNV             +                   TP+P  T
Sbjct: 61   SQ-KQPTPGSAITPVHDLNVPYEGTEEYETPTADMLFPPTPL----------QTPVP--T 107

Query: 1220 PLPGSADNSLYNIPTGSSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMNQRTPLSV 1041
            PLPGSAD S+YNIPTG SDYPTP +D+G NA+ KGG             PW NQRTPLSV
Sbjct: 108  PLPGSADGSMYNIPTGGSDYPTPVNDNGSNADIKGGR---PSPYMQSPSPWSNQRTPLSV 164

Query: 1040 DVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAT 861
            DVNVAYVEGR+E DRGTS+QP TQDFFMMS+GKRKREDF AQY NGGY IPQQDGAGDAT
Sbjct: 165  DVNVAYVEGREEVDRGTSNQPLTQDFFMMSSGKRKREDF-AQYQNGGY-IPQQDGAGDAT 222

Query: 860  SEIFELEVSQG----------TIANRQILAHLASSSTKIPQLDGPIPDPYDDVLSTPNIY 711
            SE+ + E S+G          T A  +ILA L+ SS+KIPQLDGPIPDPY+D+LSTPNIY
Sbjct: 223  SEVAKAEGSRGGNFLDRRHSTTTAKSKILAELSKSSSKIPQLDGPIPDPYEDMLSTPNIY 282

Query: 710  NYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVA-XXXXXXXXXXXXXXXXXXXXXXXX 534
            NYQGVVNEDYN+VNTPAPNDLQASTPA   QND+                          
Sbjct: 283  NYQGVVNEDYNVVNTPAPNDLQASTPAPAPQNDIVDDDDDEPLNEDDDEDDLDDVDQGEE 342

Query: 533  LNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
            LNTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 343  LNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 390


>OMO91164.1 Transcription factor IIA, alpha/beta subunit [Corchorus olitorius]
          Length = 414

 Score =  469 bits (1208), Expect = e-159
 Identities = 261/431 (60%), Positives = 284/431 (65%), Gaps = 35/431 (8%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDRS 1401
            MA+S TS VYI VIEDVI+KVRDEF+NNG PGE+VLNELQGIWEMKM++A V+ GPIDRS
Sbjct: 1    MASSTTSAVYIHVIEDVINKVRDEFINNGGPGEAVLNELQGIWEMKMMRAGVICGPIDRS 60

Query: 1400 SAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPL--PG 1227
            S  KQ  PGGPITPVHDLNV             +                   TPL  P 
Sbjct: 61   SGQKQPTPGGPITPVHDLNVPYEGTEEYETPTADMLFPP--------------TPLQTPA 106

Query: 1226 STPLPGSADNSLYNIPTGSSDYPTPASD-SGGNAEAKGGNGRXXXXXXXXXXPWMNQRTP 1050
             TPLPGSAD S+YNIPTGSSDYPTP +D SGGN + KG   R          PW NQRTP
Sbjct: 107  PTPLPGSADGSMYNIPTGSSDYPTPVNDNSGGNTDVKGA--RPSPYPQQSPSPWPNQRTP 164

Query: 1049 LSVDVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDGAG 870
            LSVDVNVAYVEGR+E DRGTS+QP TQDFFMMSAGKRKREDF  QYHN GY IPQQDGAG
Sbjct: 165  LSVDVNVAYVEGREEGDRGTSNQPLTQDFFMMSAGKRKREDFATQYHNSGY-IPQQDGAG 223

Query: 869  DATSEIFELEV-------------------------------SQGTIANRQILAHLASSS 783
            D TSE+  LE+                                  T    +I A   +SS
Sbjct: 224  DVTSEVTNLELVLVTDQGLLESSLDYMRAIMGSKGDNVLDRCDSATTEKIKIEAPSVTSS 283

Query: 782  TKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVAX 603
            +KIPQ DGPIPDPYDD+LSTPNIYNYQGVVNEDYN+VNTPAPNDLQA+TPA V QND   
Sbjct: 284  SKIPQQDGPIPDPYDDMLSTPNIYNYQGVVNEDYNVVNTPAPNDLQAATPAPVPQNDTGD 343

Query: 602  XXXXXXXXXXXXXXXXXXXXXXXLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDI 423
                                   +NT HLVLAQFDKVTRTKS+WKC LKDGIMHINNKDI
Sbjct: 344  DDDDEPLNEDDDDDLDDVDQGEDMNTAHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDI 403

Query: 422  LFNKATGEFDF 390
            LFNKATGEFDF
Sbjct: 404  LFNKATGEFDF 414


>XP_017647079.1 PREDICTED: transcription initiation factor IIA large subunit-like
            [Gossypium arboreum]
          Length = 391

 Score =  468 bits (1205), Expect = e-159
 Identities = 253/409 (61%), Positives = 279/409 (68%), Gaps = 13/409 (3%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDRS 1401
            M +S TS VYI VIEDVI+KVRDEF+NNG PGE+VLNELQG+WE KM+QA  + GPI+RS
Sbjct: 1    MTSSTTSAVYIHVIEDVINKVRDEFINNGGPGEAVLNELQGLWETKMMQAGAICGPIERS 60

Query: 1400 SAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPL--PG 1227
            +  KQ   GGPITPVHDLNV             +                   TPL  P 
Sbjct: 61   TGQKQPTAGGPITPVHDLNVPYEGTEEYETPTADMLFPP--------------TPLQTPA 106

Query: 1226 STPLPGSADNSLYNIPTGSSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMNQRTPL 1047
             TPLPGSAD S+YNIPTGSSDYPTP +D   NA+ KGG             PW NQRTPL
Sbjct: 107  PTPLPGSADGSMYNIPTGSSDYPTPVNDGTSNADVKGGR---PSPYMQSPSPWSNQRTPL 163

Query: 1046 SVDVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDGAGD 867
            SVDVNVAYVEGRDE DRGTS+QP TQDFFMM  GKRKREDF  QY+NGGY IPQQDGAGD
Sbjct: 164  SVDVNVAYVEGRDEVDRGTSNQPLTQDFFMMPPGKRKREDFATQYNNGGY-IPQQDGAGD 222

Query: 866  ATSEIFELEVSQG----------TIANRQILAHLASSSTKIPQLDGPIPDPYDDVLSTPN 717
            +TSE+ + E S+G          T     ILAH  +SS KI QLDGPIPDP++D+LSTPN
Sbjct: 223  STSEVAKTEGSKGCNFLGRHDSATTGKTNILAHFVTSSPKISQLDGPIPDPFEDMLSTPN 282

Query: 716  IYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVAXXXXXXXXXXXXXXXXXXXXXXX 537
            IYNYQGVV EDYN+ NTPAPNDLQA+TPA V QND                         
Sbjct: 283  IYNYQGVVGEDYNVANTPAPNDLQAATPAPVAQNDTGDNDDDEPLNEDDDDDDLDDVDQE 342

Query: 536  XLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
             LNTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 343  ELNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 391


>OAY61177.1 hypothetical protein MANES_01G169400 [Manihot esculenta]
          Length = 407

 Score =  468 bits (1205), Expect = e-159
 Identities = 271/416 (65%), Positives = 292/416 (70%), Gaps = 20/416 (4%)
 Frame = -1

Query: 1577 MATSGT-SMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDR 1404
            MATS T S VYI VIEDVI+KVRDEF+NNG PGE VL+ELQ IWEMKM+QA V+ GPIDR
Sbjct: 1    MATSSTTSTVYIHVIEDVINKVRDEFINNGGPGEGVLSELQAIWEMKMMQAGVICGPIDR 60

Query: 1403 SSAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGS--TPLP 1230
            SSAPK LAPG PITPVHDLNV             E                PGS  TPLP
Sbjct: 61   SSAPK-LAPGAPITPVHDLNVPYEGTEEYETPTAEMLFPPTPLQTPIQTPLPGSVQTPLP 119

Query: 1229 GS--TPLPGSADNS-LYNIPTG-SSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMN 1062
            GS  TPLPGS DNS +YNIPTG +S+YPTPASD+GG+ EAK G             PWMN
Sbjct: 120  GSVQTPLPGSVDNSSMYNIPTGPTSEYPTPASDTGGSTEAKAGR---PSPYMQPPSPWMN 176

Query: 1061 QRTPLSVDVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQ 882
            QR PL  DVNVAYVEGRDEADRG SHQP TQDFFMMS+GKRKR+DF AQY+NGG+ IPQQ
Sbjct: 177  QRPPL--DVNVAYVEGRDEADRGASHQPLTQDFFMMSSGKRKRDDFGAQYNNGGF-IPQQ 233

Query: 881  DGAGDATSEIFELEVSQG----------TIANRQILAHLASSSTKIPQLDGPIPDPYDDV 732
            DGAGDA S    L+ SQG          T AN +IL+H    + +IPQLDGPIPDPYDDV
Sbjct: 234  DGAGDAPS--VALQASQGYGSLGRHDMITNANIEILSHATRQAMRIPQLDGPIPDPYDDV 291

Query: 731  LSTPNIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVA--XXXXXXXXXXXXXXXX 558
            LSTPNIYNYQGVVNEDYNI NTPAPNDLQASTPAV  QND                    
Sbjct: 292  LSTPNIYNYQGVVNEDYNIANTPAPNDLQASTPAVAPQNDAGDDDDDEPLNEDDDDDDDL 351

Query: 557  XXXXXXXXLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
                    +NTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 352  DDVEQGEDMNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 407


>XP_017612850.1 PREDICTED: transcription initiation factor IIA large subunit-like
            [Gossypium arboreum]
          Length = 390

 Score =  467 bits (1201), Expect = e-158
 Identities = 258/408 (63%), Positives = 287/408 (70%), Gaps = 12/408 (2%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDRS 1401
            MA++ TS VYI VIEDVI+KVR+EF+NNG PGE+VLNELQGIWE KM+QA V+ GPI+RS
Sbjct: 1    MASTTTSSVYINVIEDVINKVREEFINNGGPGEAVLNELQGIWEAKMMQAGVILGPIERS 60

Query: 1400 SAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1221
            S  KQ  PG  ITPVHDLNV             +                   TP+P  T
Sbjct: 61   SQ-KQPTPGSAITPVHDLNVPYEGTEEYETPTADMLFPPTPL----------QTPVP--T 107

Query: 1220 PLPGSADNSLYNIPTGSSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMNQRTPLSV 1041
            PLPGSAD S+YNIPTG SDYPTP +D+G NA+ KGG              W NQRTPLSV
Sbjct: 108  PLPGSADGSMYNIPTGGSDYPTPVNDNGSNADIKGGR---PSPYMQSPSAWSNQRTPLSV 164

Query: 1040 DVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAT 861
            DVNVAYVEGR+E DRGTS+QP TQDFFMMS+GKRKREDF AQY NGGY IPQQDGAGDAT
Sbjct: 165  DVNVAYVEGREEVDRGTSNQPLTQDFFMMSSGKRKREDF-AQYQNGGY-IPQQDGAGDAT 222

Query: 860  SEIFELEVSQG----------TIANRQILAHLASSSTKIPQLDGPIPDPYDDVLSTPNIY 711
            SE+ + E S+G          T A  +ILA L+ S +KIPQLDGPIPDPY+D+LSTPNIY
Sbjct: 223  SEVAKAEGSRGGNFLDRRHSTTTAKSKILAELSKSLSKIPQLDGPIPDPYEDMLSTPNIY 282

Query: 710  NYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVA-XXXXXXXXXXXXXXXXXXXXXXXX 534
            NYQGVVNEDYN+VNTPAPNDLQASTPA   QND+                          
Sbjct: 283  NYQGVVNEDYNVVNTPAPNDLQASTPAPAPQNDIVDDDDDEPLNEDDDEDDLDDVDQGEE 342

Query: 533  LNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
            LNTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 343  LNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 390


>GAV78305.1 TFIIA domain-containing protein [Cephalotus follicularis]
          Length = 397

 Score =  467 bits (1201), Expect = e-158
 Identities = 262/410 (63%), Positives = 288/410 (70%), Gaps = 14/410 (3%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDRS 1401
            MATS TS VYI VIEDVI+KVR+EFVNNG PG+SVL ELQG+WEMKM+ A V+ GPI+RS
Sbjct: 1    MATSTTSSVYIHVIEDVINKVREEFVNNGGPGDSVLTELQGLWEMKMMHAGVICGPIERS 60

Query: 1400 SAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGS- 1224
            SAPKQ APGGPITPVHDLNV             E                   TPLPGS 
Sbjct: 61   SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPI------QTPLPGSA 114

Query: 1223 -TPLPGSADN-SLYNIPTGSSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMNQRTP 1050
             TPL GSADN S+YNIPTG S+YPTP SDSGG+++ KGG             PWM+QR P
Sbjct: 115  ATPLLGSADNSSMYNIPTGPSEYPTPVSDSGGSSDVKGGR---QYMPSPSPTPWMSQRPP 171

Query: 1049 LSVDVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDGAG 870
            + VDVNVAYVEGRDE DRG+S QP TQDFFMMS+GKRKREDF  QYH+ GY IPQQDGAG
Sbjct: 172  V-VDVNVAYVEGRDEVDRGSSQQPLTQDFFMMSSGKRKREDFATQYHSSGY-IPQQDGAG 229

Query: 869  DATSEIFELEVSQG----------TIANRQILAHLASSSTKIPQLDGPIPDPYDDVLSTP 720
            DAT     L+VS+G          T A R++LA    SS+KIPQLDGPIPDPYDDVLSTP
Sbjct: 230  DATPGF--LQVSKGSDSLAGRGTVTSAKREMLACGTRSSSKIPQLDGPIPDPYDDVLSTP 287

Query: 719  NIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVAXXXXXXXXXXXXXXXXXXXXXX 540
            NIYNYQGVVNEDYNIVNTPA N+LQA TPA++ Q DV                       
Sbjct: 288  NIYNYQGVVNEDYNIVNTPAVNELQAGTPAIIAQQDVVDDDDDEPLNENDDDELDDVDQG 347

Query: 539  XXLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
              LNT HLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 348  EELNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 397


>XP_016750614.1 PREDICTED: transcription initiation factor IIA large subunit-like
            [Gossypium hirsutum]
          Length = 391

 Score =  466 bits (1199), Expect = e-158
 Identities = 252/409 (61%), Positives = 278/409 (67%), Gaps = 13/409 (3%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDRS 1401
            M +S TS VYI VIEDVI+KVRDEF+NNG PGE+VLNELQG+WE KM+QA  + GPI+RS
Sbjct: 1    MTSSTTSAVYIHVIEDVINKVRDEFINNGGPGEAVLNELQGLWETKMMQAGAICGPIERS 60

Query: 1400 SAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPL--PG 1227
            +  KQ   GGPITPVHDLNV             +                   TPL  P 
Sbjct: 61   TGQKQPTAGGPITPVHDLNVPYEGTEEYETPTADMLFPP--------------TPLQTPA 106

Query: 1226 STPLPGSADNSLYNIPTGSSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMNQRTPL 1047
             TPL GSAD S+YNIPTGSSDYPTP +D   NA+ KGG             PW NQRTPL
Sbjct: 107  PTPLSGSADGSMYNIPTGSSDYPTPVNDGASNADVKGGR---PSPYMQSPSPWSNQRTPL 163

Query: 1046 SVDVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDGAGD 867
            SVDVNVAYVEGRDE DRGTS+QP TQDFFMM  GKRKREDF  QY+NGGY IPQQDGAGD
Sbjct: 164  SVDVNVAYVEGRDEVDRGTSNQPLTQDFFMMPPGKRKREDFATQYNNGGY-IPQQDGAGD 222

Query: 866  ATSEIFELEVSQG----------TIANRQILAHLASSSTKIPQLDGPIPDPYDDVLSTPN 717
            +TSE+ + E S+G          T     ILAH  +SS KI QLDGPIPDP++D+LSTPN
Sbjct: 223  STSEVAKTEGSKGCNFLGRHDSATTGKTNILAHFVTSSPKISQLDGPIPDPFEDMLSTPN 282

Query: 716  IYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVAXXXXXXXXXXXXXXXXXXXXXXX 537
            IYNYQGVV EDYN+ NTPAPNDLQA+TPA V QND                         
Sbjct: 283  IYNYQGVVGEDYNVANTPAPNDLQAATPAPVAQNDTGDNDDDEPLNEDDDDDDLDDVDQE 342

Query: 536  XLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
             LNTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 343  ELNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 391


>XP_012475136.1 PREDICTED: transcription initiation factor IIA large subunit-like
            [Gossypium raimondii] KJB08914.1 hypothetical protein
            B456_001G112500 [Gossypium raimondii]
          Length = 391

 Score =  465 bits (1196), Expect = e-158
 Identities = 259/409 (63%), Positives = 287/409 (70%), Gaps = 13/409 (3%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDRS 1401
            MA++ TS VYI VIEDVI+KVR+EF+NNG PGE+VLNELQGIWE KM+QA V+ GPI+RS
Sbjct: 1    MASTTTSSVYINVIEDVINKVREEFINNGGPGEAVLNELQGIWEAKMMQAGVILGPIERS 60

Query: 1400 SAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1221
            S  KQ  PG  ITPVHDLNV             +                   TP+P  T
Sbjct: 61   SQ-KQPTPGSAITPVHDLNVPYEGTEEYETPTADMLFPPTPL----------QTPVP--T 107

Query: 1220 PLPGSADNSLYNIPTGSSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMNQRTPLSV 1041
            PLPGSAD S+YNIPTG SDYPTP +D+G NA+ KGG             PW NQRTPLSV
Sbjct: 108  PLPGSADGSMYNIPTGGSDYPTPVNDNGSNADIKGGR---PSPYMQSPSPWSNQRTPLSV 164

Query: 1040 DVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAT 861
            DVNVAYVEGR+E DRGTS+QP TQDFFMMS+GKRKREDF AQY NGGY IPQQDGAGDAT
Sbjct: 165  DVNVAYVEGREEVDRGTSNQPLTQDFFMMSSGKRKREDF-AQYQNGGY-IPQQDGAGDAT 222

Query: 860  SEIFELEVSQG----------TIANRQILAHLASSSTKIPQLDGPIPDPYDDVLSTPNIY 711
            SE+ + E S+G          T A  + LA LA SS+KIPQLDGPIPD Y+D+LSTPNIY
Sbjct: 223  SEVAKAEGSRGGNFLDRRHSTTTAKSKFLAELARSSSKIPQLDGPIPDSYEDMLSTPNIY 282

Query: 710  NYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVA--XXXXXXXXXXXXXXXXXXXXXXX 537
            NYQGVVNEDYN+VNTPAPNDLQASTPA   QND+                          
Sbjct: 283  NYQGVVNEDYNVVNTPAPNDLQASTPAPAPQNDIVDDDDDEPLNEDDDDEDDLDDVDQGE 342

Query: 536  XLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
             LNTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 343  ELNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 391


>XP_016745211.1 PREDICTED: transcription initiation factor IIA large subunit-like
            [Gossypium hirsutum]
          Length = 391

 Score =  463 bits (1191), Expect = e-157
 Identities = 259/409 (63%), Positives = 287/409 (70%), Gaps = 13/409 (3%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDRS 1401
            MA++ TS VYI VIEDVI+KVR+EF+NNG PGE+VLNELQGIWE KM+QA V+ GPI+RS
Sbjct: 1    MASTTTSSVYINVIEDVINKVREEFINNGGPGEAVLNELQGIWEAKMMQAGVILGPIERS 60

Query: 1400 SAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPLPGST 1221
            S  KQ  PG  ITPVHDLNV             +                   TP+P  T
Sbjct: 61   SQ-KQPTPGSAITPVHDLNVPYEGTEEYETPTADMLFPPTPL----------QTPVP--T 107

Query: 1220 PLPGSADNSLYNIPTGSSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMNQRTPLSV 1041
            PLPGSAD S+YNIPTG SD PTP +D+G NA+ KGG             PW NQRTPLSV
Sbjct: 108  PLPGSADGSMYNIPTGGSDSPTPVNDNGSNADIKGGR---PSPYMQSPSPWSNQRTPLSV 164

Query: 1040 DVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAT 861
            DVNVAYVEGR+E DRGTS+QP TQDFFMMS+GKRKREDF AQY NGGY IPQQDGAGDAT
Sbjct: 165  DVNVAYVEGREEVDRGTSNQPLTQDFFMMSSGKRKREDF-AQYQNGGY-IPQQDGAGDAT 222

Query: 860  SEIFELEVSQG----------TIANRQILAHLASSSTKIPQLDGPIPDPYDDVLSTPNIY 711
            SE+ + E S+G          T A  +ILA LA SS+KIPQLDGPIPD Y+D+LSTPNIY
Sbjct: 223  SEVAKAEGSRGGNFLDRRHSTTTAKSKILAELARSSSKIPQLDGPIPDSYEDMLSTPNIY 282

Query: 710  NYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVA--XXXXXXXXXXXXXXXXXXXXXXX 537
            NYQGVVNEDYN+VNTPAPNDLQASTPA   QND+                          
Sbjct: 283  NYQGVVNEDYNVVNTPAPNDLQASTPAPAPQNDIVDDDDDEPLNEDDDDEDDLDDVDQGE 342

Query: 536  XLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
             LNTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 343  ELNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 391


>XP_012066966.1 PREDICTED: transcription initiation factor IIA large subunit
            [Jatropha curcas] KDP42211.1 hypothetical protein
            JCGZ_02941 [Jatropha curcas]
          Length = 407

 Score =  463 bits (1192), Expect = e-157
 Identities = 268/416 (64%), Positives = 291/416 (69%), Gaps = 20/416 (4%)
 Frame = -1

Query: 1577 MATSG-TSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDR 1404
            MATS  TS VYI VIEDVI+KVRDEF+NNG PGESVLNELQGIWEMKM+QA V+ GPI+R
Sbjct: 1    MATSSATSTVYIHVIEDVINKVRDEFINNGGPGESVLNELQGIWEMKMMQAGVILGPIER 60

Query: 1403 SSAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGS--TPLP 1230
            SSA K + PGGPITPVHDLNV             E                PGS  TPLP
Sbjct: 61   SSAAKPV-PGGPITPVHDLNVPYEGPEEYETPTAEILFPPTPLQTPIQTPLPGSVQTPLP 119

Query: 1229 GS--TPLPGSADNS-LYNIPTG-SSDYPTPASDSGGNAEAKGGNGRXXXXXXXXXXPWMN 1062
            G+  TPLPGSADNS +YNIPTG +S+YPTP SD+GG+ EAK G             PWMN
Sbjct: 120  GNGQTPLPGSADNSSMYNIPTGPTSEYPTPVSDTGGSTEAKPGR---PSPYMQAPSPWMN 176

Query: 1061 QRTPLSVDVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNIPQQ 882
            QR PL  DVNVAYVEGR+EADRG SHQP TQDFFMMS+GKRKREDF  Q++NGG+ IPQQ
Sbjct: 177  QRPPL--DVNVAYVEGREEADRGNSHQPLTQDFFMMSSGKRKREDFATQFNNGGF-IPQQ 233

Query: 881  DGAGDATSEIFELEVSQG----------TIANRQILAHLASSSTKIPQLDGPIPDPYDDV 732
            DGAGD  SE   L+ SQG          T AN +IL+H      KIPQLDGPIPDPYDDV
Sbjct: 234  DGAGDVPSEA--LQASQGNGSLGRCDTITSANIEILSHATRRVLKIPQLDGPIPDPYDDV 291

Query: 731  LSTPNIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVA--XXXXXXXXXXXXXXXX 558
            LSTPNIYNYQGVVNEDYNI NTPAPND+QASTPAV  QND                    
Sbjct: 292  LSTPNIYNYQGVVNEDYNIANTPAPNDIQASTPAVAPQNDAVDDDDDEPLNEDDDDDDDL 351

Query: 557  XXXXXXXXLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
                    +NTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 352  DDVEQGEDMNTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 407


>XP_018820031.1 PREDICTED: transcription initiation factor IIA large subunit-like
            [Juglans regia]
          Length = 397

 Score =  455 bits (1171), Expect = e-154
 Identities = 257/418 (61%), Positives = 280/418 (66%), Gaps = 22/418 (5%)
 Frame = -1

Query: 1577 MATSGTSMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQARVVGGPIDRS 1401
            MA S TS VYI+VIEDVI+KVRDEFVNNG PGE VL E QG WE KMIQA VV GPIDR+
Sbjct: 1    MAASTTSNVYIQVIEDVINKVRDEFVNNGGPGEDVLKEFQGTWEAKMIQAGVVIGPIDRT 60

Query: 1400 SAPKQLAPGGPITPVHDLNVXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXPGSTPL--PG 1227
             A K   PGGPITPVHDLNV             E                   TPL  P 
Sbjct: 61   GALKP-TPGGPITPVHDLNVPYEGTEEYETPTAEMLFPP--------------TPLQTPS 105

Query: 1226 STPLPGSADNSLYNIPTGSSDYPTPASDSGG--------NAEAKGGNGRXXXXXXXXXXP 1071
             TPLPG+A+NS+YNIPTG SDYPTP +D+GG        N EAKGG             P
Sbjct: 106  QTPLPGTAENSMYNIPTGPSDYPTPGNDTGGGGGGNNNNNNEAKGGR---PSPFMQPPSP 162

Query: 1070 WMNQRTPLSVDVNVAYVEGRDEADRGTSHQPPTQDFFMMSAGKRKREDFPAQYHNGGYNI 891
            W+NQR PL  DVNVAYVEGRDE DRG SHQP TQDFF+  +GKRKREDF +QYH GG+ I
Sbjct: 163  WINQRAPL--DVNVAYVEGRDEVDRGASHQPLTQDFFVAPSGKRKREDFSSQYHAGGF-I 219

Query: 890  PQQDGAGDATSEIFELEVSQG----------TIANRQILAHLASSSTKIPQLDGPIPDPY 741
            PQQDGAGDAT E+FE+EVS G          T AN++ LA++  SS+KIPQLDGPIPDPY
Sbjct: 220  PQQDGAGDATLEVFEIEVSGGSASLGGHCIVTTANKETLAYVRESSSKIPQLDGPIPDPY 279

Query: 740  DDVLSTPNIYNYQGVVNEDYNIVNTPAPNDLQASTPAVVTQNDVA-XXXXXXXXXXXXXX 564
            DDVLSTPNIYNYQG  NEDYNI NTPAP D+ A TPAVV QNDV                
Sbjct: 280  DDVLSTPNIYNYQGAYNEDYNIANTPAPTDIPAGTPAVVAQNDVVEDDDDEPPLNENDDD 339

Query: 563  XXXXXXXXXXLNTQHLVLAQFDKVTRTKSKWKCALKDGIMHINNKDILFNKATGEFDF 390
                       NTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 340  DFDDVDEGEEQNTQHLVLAQFDKVTRTKSRWKCLLKDGIMHINNKDILFNKATGEFEF 397