BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Perilla23_contig00030613
         (390 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011089039.1| PREDICTED: RNA polymerase sigma factor sigD,...   125   3e-46
ref|XP_012849779.1| PREDICTED: RNA polymerase sigma factor sigD,...   126   8e-45
ref|XP_012849780.1| PREDICTED: RNA polymerase sigma factor sigD,...   126   8e-45
ref|XP_009612911.1| PREDICTED: RNA polymerase sigma factor sigD,...   120   7e-40
ref|XP_010324724.1| PREDICTED: RNA polymerase sigma factor sigD,...   119   9e-40
ref|XP_010324734.1| PREDICTED: RNA polymerase sigma factor sigD,...   119   9e-40
ref|XP_010324732.1| PREDICTED: RNA polymerase sigma factor sigD,...   119   9e-40
ref|XP_009783017.1| PREDICTED: RNA polymerase sigma factor sigD,...   120   1e-39
ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD,...   119   3e-39
emb|CDP17818.1| unnamed protein product [Coffea canephora]            107   4e-37
ref|XP_002272444.2| PREDICTED: RNA polymerase sigma factor sigD,...   116   4e-37
emb|CBI24961.3| unnamed protein product [Vitis vinifera]              116   4e-37
ref|XP_010103268.1| RNA polymerase sigma factor rpoD [Morus nota...   112   5e-32
ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD,...   101   6e-32
gb|AKC88710.1| sigma factor [Hypseocharis bilobata]                   108   1e-31
ref|XP_009125938.1| PREDICTED: RNA polymerase sigma factor sigD,...   110   1e-31
ref|XP_009354359.1| PREDICTED: RNA polymerase sigma factor sigD,...   103   1e-31
ref|XP_010269782.1| PREDICTED: RNA polymerase sigma factor sigD,...   106   3e-31
gb|AKC88712.1| sigma factor [Monsonia emarginata]                     101   3e-31
ref|XP_013679794.1| PREDICTED: RNA polymerase sigma factor sigD,...   110   3e-31

>ref|XP_011089039.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Sesamum
           indicum]
          Length = 446

 Score =  125 bits (315), Expect(2) = 3e-46
 Identities = 60/77 (77%), Positives = 69/77 (89%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLLRGAIKF+PE+GYKLSTYAYWWIRQSITRA+ANKS+IIRLP  + EL+PKICEA+
Sbjct: 243 GSIGLLRGAIKFNPERGYKLSTYAYWWIRQSITRAIANKSKIIRLPGSISELVPKICEAN 302

Query: 52  NGLSRKLGRFPVYEEIA 2
             LSR+L R P Y+EIA
Sbjct: 303 AALSRRLRRPPTYDEIA 319



 Score = 86.7 bits (213), Expect(2) = 3e-46
 Identities = 44/53 (83%), Positives = 47/53 (88%)
 Frame = -1

Query: 390 WAKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           WAKAA IS+R LDRIL NGRESE+RIT+CY  LVVSIASSY GKGLSLQDLTQ
Sbjct: 189 WAKAAGISQRNLDRILCNGRESEERITSCYRRLVVSIASSYQGKGLSLQDLTQ 241


>ref|XP_012849779.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform
           X1 [Erythranthe guttatus]
          Length = 487

 Score =  126 bits (316), Expect(2) = 8e-45
 Identities = 61/77 (79%), Positives = 68/77 (88%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLLRGAIKF+PEKGYKLSTYAYWWIRQ+ITRA+  KS+IIRLP  + EL+PKICEA+
Sbjct: 233 GSIGLLRGAIKFNPEKGYKLSTYAYWWIRQAITRAITKKSKIIRLPGSIHELVPKICEAN 292

Query: 52  NGLSRKLGRFPVYEEIA 2
             LSRKL RFP YEEIA
Sbjct: 293 AVLSRKLRRFPTYEEIA 309



 Score = 81.3 bits (199), Expect(2) = 8e-45
 Identities = 39/53 (73%), Positives = 45/53 (84%)
 Frame = -1

Query: 390 WAKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           WA AA IS++ LDRI+WNG++SEKRIT  Y  LVVS+ASSY GKGLSLQDLTQ
Sbjct: 179 WANAAGISQKNLDRIIWNGKQSEKRITKSYLRLVVSVASSYQGKGLSLQDLTQ 231


>ref|XP_012849780.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform
           X2 [Erythranthe guttatus]
          Length = 436

 Score =  126 bits (316), Expect(2) = 8e-45
 Identities = 61/77 (79%), Positives = 68/77 (88%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLLRGAIKF+PEKGYKLSTYAYWWIRQ+ITRA+  KS+IIRLP  + EL+PKICEA+
Sbjct: 233 GSIGLLRGAIKFNPEKGYKLSTYAYWWIRQAITRAITKKSKIIRLPGSIHELVPKICEAN 292

Query: 52  NGLSRKLGRFPVYEEIA 2
             LSRKL RFP YEEIA
Sbjct: 293 AVLSRKLRRFPTYEEIA 309



 Score = 81.3 bits (199), Expect(2) = 8e-45
 Identities = 39/53 (73%), Positives = 45/53 (84%)
 Frame = -1

Query: 390 WAKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           WA AA IS++ LDRI+WNG++SEKRIT  Y  LVVS+ASSY GKGLSLQDLTQ
Sbjct: 179 WANAAGISQKNLDRIIWNGKQSEKRITKSYLRLVVSVASSYQGKGLSLQDLTQ 231


>ref|XP_009612911.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic
           [Nicotiana tomentosiformis]
          Length = 416

 Score =  120 bits (301), Expect(2) = 7e-40
 Identities = 57/77 (74%), Positives = 66/77 (85%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLL GA KF+P+KGYKLSTYAYWWIRQ+ITRA+ANKSR+IRLP  + EL+PKIC A+
Sbjct: 211 GSIGLLHGAKKFNPKKGYKLSTYAYWWIRQAITRAIANKSRVIRLPGSISELVPKICNAN 270

Query: 52  NGLSRKLGRFPVYEEIA 2
             LSRKL R P Y+EIA
Sbjct: 271 TELSRKLRRMPSYDEIA 287



 Score = 70.5 bits (171), Expect(2) = 7e-40
 Identities = 34/52 (65%), Positives = 43/52 (82%)
 Frame = -1

Query: 387 AKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           AKAA +SRR+LD++L N + S+K+I  CY GLVVS+A+SY GKGLSLQDL Q
Sbjct: 158 AKAAGMSRRRLDKLLVNAKISQKKIIKCYRGLVVSVAASYQGKGLSLQDLIQ 209


>ref|XP_010324724.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform
           X1 [Solanum lycopersicum]
          Length = 423

 Score =  119 bits (298), Expect(2) = 9e-40
 Identities = 57/77 (74%), Positives = 66/77 (85%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLL GA KF+P+KGYKLSTYAYWWIRQ+I+RAVANKSR+IRLP  + EL+PKIC A+
Sbjct: 218 GSIGLLHGAKKFNPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLPGSISELVPKICNAN 277

Query: 52  NGLSRKLGRFPVYEEIA 2
             LSRKL R P Y+EIA
Sbjct: 278 TELSRKLRRMPSYDEIA 294



 Score = 71.2 bits (173), Expect(2) = 9e-40
 Identities = 34/52 (65%), Positives = 43/52 (82%)
 Frame = -1

Query: 387 AKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           AKAA +S R+LD++L N +ES+K+I  CY GLVVS+A+SY GKGLSLQDL Q
Sbjct: 165 AKAAGMSTRRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQ 216


>ref|XP_010324734.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform
           X3 [Solanum lycopersicum]
          Length = 340

 Score =  119 bits (298), Expect(2) = 9e-40
 Identities = 57/77 (74%), Positives = 66/77 (85%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLL GA KF+P+KGYKLSTYAYWWIRQ+I+RAVANKSR+IRLP  + EL+PKIC A+
Sbjct: 218 GSIGLLHGAKKFNPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLPGSISELVPKICNAN 277

Query: 52  NGLSRKLGRFPVYEEIA 2
             LSRKL R P Y+EIA
Sbjct: 278 TELSRKLRRMPSYDEIA 294



 Score = 71.2 bits (173), Expect(2) = 9e-40
 Identities = 34/52 (65%), Positives = 43/52 (82%)
 Frame = -1

Query: 387 AKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           AKAA +S R+LD++L N +ES+K+I  CY GLVVS+A+SY GKGLSLQDL Q
Sbjct: 165 AKAAGMSTRRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQ 216


>ref|XP_010324732.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform
           X2 [Solanum lycopersicum]
          Length = 340

 Score =  119 bits (298), Expect(2) = 9e-40
 Identities = 57/77 (74%), Positives = 66/77 (85%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLL GA KF+P+KGYKLSTYAYWWIRQ+I+RAVANKSR+IRLP  + EL+PKIC A+
Sbjct: 218 GSIGLLHGAKKFNPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLPGSISELVPKICNAN 277

Query: 52  NGLSRKLGRFPVYEEIA 2
             LSRKL R P Y+EIA
Sbjct: 278 TELSRKLRRMPSYDEIA 294



 Score = 71.2 bits (173), Expect(2) = 9e-40
 Identities = 34/52 (65%), Positives = 43/52 (82%)
 Frame = -1

Query: 387 AKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           AKAA +S R+LD++L N +ES+K+I  CY GLVVS+A+SY GKGLSLQDL Q
Sbjct: 165 AKAAGMSTRRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQ 216


>ref|XP_009783017.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic
           [Nicotiana sylvestris]
          Length = 426

 Score =  120 bits (300), Expect(2) = 1e-39
 Identities = 57/77 (74%), Positives = 65/77 (84%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLL GA KF+P KGYKLSTYAYWWIRQ+ITRA+ANKSR+IRLP  + EL+PKIC A+
Sbjct: 221 GSIGLLHGAKKFNPNKGYKLSTYAYWWIRQAITRAIANKSRVIRLPGSISELVPKICNAN 280

Query: 52  NGLSRKLGRFPVYEEIA 2
             LSRKL R P Y+EIA
Sbjct: 281 TELSRKLQRMPSYDEIA 297



 Score = 70.1 bits (170), Expect(2) = 1e-39
 Identities = 34/52 (65%), Positives = 43/52 (82%)
 Frame = -1

Query: 387 AKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           AKAA +SRR+LD++L N + S+K+I  CY GLVVS+A+SY GKGLSLQDL Q
Sbjct: 168 AKAAGMSRRRLDKVLINAKISQKKIIKCYTGLVVSVAASYQGKGLSLQDLIQ 219


>ref|XP_006345495.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Solanum tuberosum]
          Length = 421

 Score =  119 bits (298), Expect(2) = 3e-39
 Identities = 57/77 (74%), Positives = 66/77 (85%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLL GA KF+P+KGYKLSTYAYWWIRQ+I+RAVANKSR+IRLP  + EL+PKIC A+
Sbjct: 216 GSIGLLHGAKKFNPKKGYKLSTYAYWWIRQAISRAVANKSRVIRLPGSISELVPKICNAN 275

Query: 52  NGLSRKLGRFPVYEEIA 2
             LSRKL R P Y+EIA
Sbjct: 276 TELSRKLRRMPSYDEIA 292



 Score = 69.7 bits (169), Expect(2) = 3e-39
 Identities = 33/52 (63%), Positives = 43/52 (82%)
 Frame = -1

Query: 387 AKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           AKAA +S ++LD++L N +ES+K+I  CY GLVVS+A+SY GKGLSLQDL Q
Sbjct: 163 AKAAGMSTQRLDKLLINAKESQKKIIQCYRGLVVSVAASYQGKGLSLQDLIQ 214


>emb|CDP17818.1| unnamed protein product [Coffea canephora]
          Length = 445

 Score =  107 bits (266), Expect(2) = 4e-37
 Identities = 49/77 (63%), Positives = 63/77 (81%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           G++GLL GA KF+PEKGYKLSTY YWWIRQ+IT+A+A KS+I RLP  + EL+P+ICEA+
Sbjct: 239 GNLGLLHGAKKFNPEKGYKLSTYVYWWIRQAITKAIAKKSKITRLPGSVSELVPRICEAN 298

Query: 52  NGLSRKLGRFPVYEEIA 2
             LSR+L + P  +EIA
Sbjct: 299 AVLSRRLRKLPTCQEIA 315



 Score = 74.7 bits (182), Expect(2) = 4e-37
 Identities = 34/53 (64%), Positives = 44/53 (83%)
 Frame = -1

Query: 390 WAKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           WAKAA +S+  LD++L +GRE+++RIT CY  LV+S+ASSY GKGLSLQDL Q
Sbjct: 185 WAKAAGMSKNSLDKVLCDGREAQERITRCYRRLVISVASSYQGKGLSLQDLIQ 237


>ref|XP_002272444.2| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Vitis
           vinifera]
          Length = 442

 Score =  116 bits (290), Expect(2) = 4e-37
 Identities = 54/77 (70%), Positives = 64/77 (83%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLLRGA +FDP++GYKLSTY YWWIRQ+I RA+ANKSRIIRLP  +CE++ KI EA 
Sbjct: 238 GSIGLLRGAERFDPDRGYKLSTYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEAR 297

Query: 52  NGLSRKLGRFPVYEEIA 2
             LSR+L R P Y+EIA
Sbjct: 298 TVLSRRLRRLPTYDEIA 314



 Score = 65.5 bits (158), Expect(2) = 4e-37
 Identities = 33/53 (62%), Positives = 38/53 (71%)
 Frame = -1

Query: 390 WAKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           WA+A  I R  LD++L NGRES +RI   Y  LVVSIA+ Y GKGLSLQDL Q
Sbjct: 184 WAEAVGIKRSSLDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQ 236


>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  116 bits (290), Expect(2) = 4e-37
 Identities = 54/77 (70%), Positives = 64/77 (83%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLLRGA +FDP++GYKLSTY YWWIRQ+I RA+ANKSRIIRLP  +CE++ KI EA 
Sbjct: 115 GSIGLLRGAERFDPDRGYKLSTYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEAR 174

Query: 52  NGLSRKLGRFPVYEEIA 2
             LSR+L R P Y+EIA
Sbjct: 175 TVLSRRLRRLPTYDEIA 191



 Score = 65.5 bits (158), Expect(2) = 4e-37
 Identities = 33/53 (62%), Positives = 38/53 (71%)
 Frame = -1

Query: 390 WAKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           WA+A  I R  LD++L NGRES +RI   Y  LVVSIA+ Y GKGLSLQDL Q
Sbjct: 61  WAEAVGIKRSSLDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQ 113


>ref|XP_010103268.1| RNA polymerase sigma factor rpoD [Morus notabilis]
           gi|587907279|gb|EXB95293.1| RNA polymerase sigma factor
           rpoD [Morus notabilis]
          Length = 422

 Score =  112 bits (279), Expect(2) = 5e-32
 Identities = 50/83 (60%), Positives = 65/83 (78%)
 Frame = -3

Query: 250 PARFDTGSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIP 71
           P     GS+GLLRGA KFDP++G KLSTY YWWIRQ+I RA+ NKSR++RLP  MC ++ 
Sbjct: 209 PDLIQEGSVGLLRGAQKFDPQRGNKLSTYVYWWIRQAIIRAIENKSRVVRLPGNMCGIVA 268

Query: 70  KICEASNGLSRKLGRFPVYEEIA 2
           K+ EA+N L+++L RFP Y+EIA
Sbjct: 269 KVTEANNVLNKRLRRFPTYDEIA 291



 Score = 52.8 bits (125), Expect(2) = 5e-32
 Identities = 26/52 (50%), Positives = 36/52 (69%)
 Frame = -1

Query: 387 AKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           AKA  +  R +D++L + RES++RI+  Y  LVVS+A+ Y GKGLS  DL Q
Sbjct: 162 AKAMGMEMRSIDKMLCDKRESQERISRSYRRLVVSVAAGYQGKGLSFPDLIQ 213


>ref|XP_004308689.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic
           [Fragaria vesca subsp. vesca]
          Length = 452

 Score =  101 bits (251), Expect(2) = 6e-32
 Identities = 48/77 (62%), Positives = 58/77 (75%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLLRGA KFDPE+G KLSTY YWWIRQ+I RA+ NKSRIIRLP  MC ++ KI  A 
Sbjct: 248 GSIGLLRGAEKFDPERGLKLSTYVYWWIRQAIIRAIENKSRIIRLPGHMCGVMAKITRAK 307

Query: 52  NGLSRKLGRFPVYEEIA 2
              +++  R P ++EIA
Sbjct: 308 KNFNQRFQRLPSHDEIA 324



 Score = 63.2 bits (152), Expect(2) = 6e-32
 Identities = 31/52 (59%), Positives = 38/52 (73%)
 Frame = -1

Query: 387 AKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           A A RI    +D+++ N RES++RI   Y GLVVS+ASSY GKGLSLQDL Q
Sbjct: 195 ANAMRIKMSSIDKVICNRRESQERIIKSYRGLVVSVASSYQGKGLSLQDLIQ 246


>gb|AKC88710.1| sigma factor [Hypseocharis bilobata]
          Length = 437

 Score =  108 bits (270), Expect(2) = 1e-31
 Identities = 50/77 (64%), Positives = 62/77 (80%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLLRGA +FDP +GYKLSTY YWW+RQ+I +AVAN SR+IRLP  +C+++ KI EA 
Sbjct: 230 GSIGLLRGAERFDPNRGYKLSTYVYWWVRQAIVKAVANDSRLIRLPGSVCDMLVKIAEAK 289

Query: 52  NGLSRKLGRFPVYEEIA 2
           N LS +L R P Y+EIA
Sbjct: 290 NTLSIRLRRLPSYDEIA 306



 Score = 55.1 bits (131), Expect(2) = 1e-31
 Identities = 29/52 (55%), Positives = 35/52 (67%)
 Frame = -1

Query: 387 AKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           A A  + +R +DRIL N R S++ I   Y GLVVSIA  Y G+GLSLQDL Q
Sbjct: 177 AMAMGMKKRNIDRILCNRRVSQETIIRTYRGLVVSIAIGYQGRGLSLQDLIQ 228


>ref|XP_009125938.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Brassica rapa]
          Length = 408

 Score =  110 bits (274), Expect(2) = 1e-31
 Identities = 53/77 (68%), Positives = 63/77 (81%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLLRGA +FDPE+GYKLSTY YWWI+Q+I RA+A+KSR+++LP  M EL  K+ EAS
Sbjct: 201 GSIGLLRGAERFDPERGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEAS 260

Query: 52  NGLSRKLGRFPVYEEIA 2
           N LSRKL R P  EEIA
Sbjct: 261 NVLSRKLRRIPSSEEIA 277



 Score = 53.5 bits (127), Expect(2) = 1e-31
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = -1

Query: 366 RRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           +R  + IL+  RE+ ++IT CY  LVVSIA+ Y GKGL+LQDL Q
Sbjct: 155 KRSANEILYRRREAREKITRCYRRLVVSIATGYQGKGLNLQDLIQ 199


>ref|XP_009354359.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Pyrus x
           bretschneideri]
          Length = 436

 Score =  103 bits (256), Expect(2) = 1e-31
 Identities = 49/77 (63%), Positives = 60/77 (77%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLLRGA KFD E+G KLSTY YWWIRQ+I RA+  KSRIIRLPV MC ++ KI +A 
Sbjct: 232 GSIGLLRGAEKFDHERGCKLSTYVYWWIRQAIIRALDKKSRIIRLPVNMCGMMAKITKAK 291

Query: 52  NGLSRKLGRFPVYEEIA 2
           N  ++++ R P Y+EIA
Sbjct: 292 NSFNQRIQRLPTYDEIA 308



 Score = 60.1 bits (144), Expect(2) = 1e-31
 Identities = 29/52 (55%), Positives = 37/52 (71%)
 Frame = -1

Query: 387 AKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           AKA  +  R +D++L   RES++RI   Y GL+VS+ASSY GKGLS QDL Q
Sbjct: 179 AKAMGMKTRSIDKVLCKKRESQERIIRSYRGLIVSVASSYQGKGLSFQDLIQ 230


>ref|XP_010269782.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Nelumbo
           nucifera]
          Length = 455

 Score =  106 bits (264), Expect(2) = 3e-31
 Identities = 49/77 (63%), Positives = 62/77 (80%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLLRG  +FDP KGYKLSTY YWWI+Q+I RA+A+KSR++RLP  + E++ KI EA+
Sbjct: 251 GSIGLLRGXERFDPRKGYKLSTYVYWWIKQAIIRAIASKSRMVRLPGSVSEMMAKIAEAN 310

Query: 52  NGLSRKLGRFPVYEEIA 2
             LS +LGR P Y+EIA
Sbjct: 311 TVLSTRLGRVPTYDEIA 327



 Score = 55.8 bits (133), Expect(2) = 3e-31
 Identities = 29/53 (54%), Positives = 35/53 (66%)
 Frame = -1

Query: 390 WAKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           WA+AA +    LD++L   RES +RI   Y  L+ SIAS Y GKGLSLQDL Q
Sbjct: 197 WAEAAGMRGATLDKMLCQARESRERIVFSYRRLIFSIASGYQGKGLSLQDLIQ 249


>gb|AKC88712.1| sigma factor [Monsonia emarginata]
          Length = 419

 Score =  101 bits (252), Expect(2) = 3e-31
 Identities = 51/77 (66%), Positives = 60/77 (77%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GS+GLLRGA KFDP++GYKLSTYAYWWIRQ+IT AVA +SR  RLPV    L+ KI EA 
Sbjct: 213 GSVGLLRGAEKFDPKRGYKLSTYAYWWIRQAITIAVAIESRPFRLPVSASSLLVKIIEAK 272

Query: 52  NGLSRKLGRFPVYEEIA 2
           N LS +L R P ++EIA
Sbjct: 273 NVLSSRLRRLPSHDEIA 289



 Score = 60.5 bits (145), Expect(2) = 3e-31
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = -1

Query: 387 AKAARISRRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQV 229
           A+   + +R +D IL N  ESE+R+   Y GL+VS+A SY GKGLSLQDL QV
Sbjct: 160 ARVMGVKKRSIDNILCNTAESEERLIRAYRGLIVSVAVSYQGKGLSLQDLIQV 212


>ref|XP_013679794.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
           [Brassica napus] gi|674947848|emb|CDX85630.1|
           BnaA02g01830D [Brassica napus]
          Length = 408

 Score =  110 bits (274), Expect(2) = 3e-31
 Identities = 53/77 (68%), Positives = 63/77 (81%)
 Frame = -3

Query: 232 GSIGLLRGAIKFDPEKGYKLSTYAYWWIRQSITRAVANKSRIIRLPVLMCELIPKICEAS 53
           GSIGLLRGA +FDPE+GYKLSTY YWWI+Q+I RA+A+KSR+++LP  M EL  K+ EAS
Sbjct: 201 GSIGLLRGAERFDPERGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEAS 260

Query: 52  NGLSRKLGRFPVYEEIA 2
           N LSRKL R P  EEIA
Sbjct: 261 NVLSRKLRRIPSCEEIA 277



 Score = 52.0 bits (123), Expect(2) = 3e-31
 Identities = 25/45 (55%), Positives = 32/45 (71%)
 Frame = -1

Query: 366 RRKLDRILWNGRESEKRITNCYHGLVVSIASSYLGKGLSLQDLTQ 232
           +R  + IL   RE+ ++IT CY  LVVSIA+ Y GKGL+LQDL Q
Sbjct: 155 KRSANEILCRRREAREKITRCYRRLVVSIATGYQGKGLNLQDLIQ 199