BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Perilla23_contig00023247
         (1118 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011081158.1| PREDICTED: DNA-directed RNA polymerase IV su...   622   e-175
ref|XP_012835484.1| PREDICTED: DNA-directed RNA polymerase IV su...   582   e-163
gb|EYU38999.1| hypothetical protein MIMGU_mgv1a000239mg [Erythra...   531   e-148
gb|EPS74753.1| hypothetical protein M569_00001, partial [Genlise...   509   e-141
emb|CDP09818.1| unnamed protein product [Coffea canephora]            455   e-125
ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV su...   426   e-116
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su...   425   e-116
ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV su...   424   e-116
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase IV su...   421   e-115
ref|XP_011650451.1| PREDICTED: DNA-directed RNA polymerase IV su...   408   e-111
ref|XP_011650450.1| PREDICTED: DNA-directed RNA polymerase IV su...   408   e-111
ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV su...   408   e-111
ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV su...   407   e-110
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su...   407   e-110
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su...   407   e-110
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-...   406   e-110
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   405   e-110
ref|XP_010325436.1| PREDICTED: DNA-directed RNA polymerase IV su...   400   e-109
ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV su...   400   e-108
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r...   400   e-108

>ref|XP_011081158.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Sesamum indicum]
          Length = 1408

 Score =  622 bits (1605), Expect = e-175
 Identities = 305/372 (81%), Positives = 340/372 (91%)
 Frame = -1

Query: 1118 DGYPKMKFKVSSKDVFAKSAIIAEVSEALLSKSSNGSLASDYWDILPKDSSQEQSSLPSN 939
            DGYPKMKFKVSSKDVFAK+AIIAEV+E LL+K+S   LA DYWD++PKDS+QE S LP+N
Sbjct: 100  DGYPKMKFKVSSKDVFAKTAIIAEVNETLLNKNSVRGLAPDYWDVIPKDSAQEFSGLPAN 159

Query: 938  KRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREFGQRIAVDETTKM 759
            KRVL+PAQVY+ILK VCPR LEA  KRKN IF+NSLLVTPNS+RVREFGQRI VDETTKM
Sbjct: 160  KRVLLPAQVYSILKHVCPRVLEALLKRKNSIFLNSLLVTPNSHRVREFGQRITVDETTKM 219

Query: 758  YRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASSASGLKNIKDL 579
            YRKLIDFRGTPNELSARVL+RYK+SKIRSEKLS+L+K+YEKQSTNDSASSASGLKNIK+L
Sbjct: 220  YRKLIDFRGTPNELSARVLDRYKVSKIRSEKLSSLEKIYEKQSTNDSASSASGLKNIKEL 279

Query: 578  LVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLMPCCDYMLHRR 399
            L+GKRTDHSFRMVVVGDPRIKV EIG+PF +A NVLI DHIN WNW++L PCCD+ML+RR
Sbjct: 280  LLGKRTDHSFRMVVVGDPRIKVDEIGLPFQIAENVLISDHINLWNWDRLEPCCDFMLYRR 339

Query: 398  GNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLIALSVKILPIN 219
            G FSV+R+GQRI IW KDMLR GDSICRPLIDGDIVL+NRPPSIHQHSLIALSV+ILPI 
Sbjct: 340  GYFSVLRNGQRICIWSKDMLRTGDSICRPLIDGDIVLINRPPSIHQHSLIALSVRILPIK 399

Query: 218  HVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQNGRNLLALGQ 39
             V+SINPL+CSP +GDFDGDCLHG+VPQS+ SRVELNEL SL  QL NGQNGRNLL+L Q
Sbjct: 400  SVVSINPLVCSPLRGDFDGDCLHGYVPQSVTSRVELNELVSLNEQLHNGQNGRNLLSLSQ 459

Query: 38   DSLTAAYLFLED 3
            DSLTAAYLFLED
Sbjct: 460  DSLTAAYLFLED 471


>ref|XP_012835484.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Erythranthe
            guttatus] gi|848869730|ref|XP_012835485.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Erythranthe
            guttatus] gi|848869733|ref|XP_012835486.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 [Erythranthe
            guttatus]
          Length = 1447

 Score =  582 bits (1501), Expect = e-163
 Identities = 283/372 (76%), Positives = 330/372 (88%)
 Frame = -1

Query: 1118 DGYPKMKFKVSSKDVFAKSAIIAEVSEALLSKSSNGSLASDYWDILPKDSSQEQSSLPSN 939
            DGYPKM F+VSSKDVFAKSAIIAEV E L++K S+G+LA DYWD++PKDS+ E + LP N
Sbjct: 139  DGYPKMTFRVSSKDVFAKSAIIAEVKEILVNKCSSGNLAYDYWDVIPKDSAVEHAVLPPN 198

Query: 938  KRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREFGQRIAVDETTKM 759
            +RVL+PAQVYNILKDVCP TL+   KRKN IF+NSLLVTPNS+RVREFGQRI +DE T+M
Sbjct: 199  RRVLLPAQVYNILKDVCPTTLQGLLKRKNSIFLNSLLVTPNSHRVREFGQRITIDELTRM 258

Query: 758  YRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASSASGLKNIKDL 579
            YRKL+DFRG+PNEL+ARVL+RYKLSKIRSEK+S++QK YE+QS NDSASS+S LKNIK+L
Sbjct: 259  YRKLVDFRGSPNELTARVLDRYKLSKIRSEKVSSMQKEYERQSLNDSASSSSALKNIKEL 318

Query: 578  LVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLMPCCDYMLHRR 399
            ++ KRTD+ FRMVVVGDPRI+V EIG+P HVA N+LI DHIN WNW+KL  CCD+ML  +
Sbjct: 319  VLAKRTDNCFRMVVVGDPRIRVDEIGLPSHVAENMLIADHINLWNWDKLEVCCDFMLCHK 378

Query: 398  GNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLIALSVKILPIN 219
            GNFS++R+G+RITIW KDMLR GDS+ RPLIDGDIVLVNRPPSIHQHSLIALSVKILP  
Sbjct: 379  GNFSILRNGERITIWSKDMLRTGDSLRRPLIDGDIVLVNRPPSIHQHSLIALSVKILPTT 438

Query: 218  HVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQNGRNLLALGQ 39
             V+SINPLICSPF+GDFDGDCLHG+VPQS+NSRVEL EL SL  QLVNGQ+GRNLL+L Q
Sbjct: 439  SVVSINPLICSPFRGDFDGDCLHGYVPQSVNSRVELQELVSLDKQLVNGQSGRNLLSLAQ 498

Query: 38   DSLTAAYLFLED 3
            DSLTAA+L LED
Sbjct: 499  DSLTAAHLILED 510


>gb|EYU38999.1| hypothetical protein MIMGU_mgv1a000239mg [Erythranthe guttata]
          Length = 1379

 Score =  531 bits (1367), Expect = e-148
 Identities = 264/372 (70%), Positives = 306/372 (82%)
 Frame = -1

Query: 1118 DGYPKMKFKVSSKDVFAKSAIIAEVSEALLSKSSNGSLASDYWDILPKDSSQEQSSLPSN 939
            DGYPKM F+VSSKDVFAKSAIIAEV E L++K S+G+LA DYWD++PKDS+ E + LP N
Sbjct: 134  DGYPKMTFRVSSKDVFAKSAIIAEVKEILVNKCSSGNLAYDYWDVIPKDSAVEHAVLPPN 193

Query: 938  KRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREFGQRIAVDETTKM 759
            +RVL+PAQVYNILKDVCP TL+   KRKN IF+NSLLVTPNS+RVREFGQRI +DE T+M
Sbjct: 194  RRVLLPAQVYNILKDVCPTTLQGLLKRKNSIFLNSLLVTPNSHRVREFGQRITIDELTRM 253

Query: 758  YRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASSASGLKNIKDL 579
            YRKL+DFRG+PNEL+AR                         S NDSASS+S LKNIK+L
Sbjct: 254  YRKLVDFRGSPNELTAR-------------------------SLNDSASSSSALKNIKEL 288

Query: 578  LVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLMPCCDYMLHRR 399
            ++ KRTD+ FRMVVVGDPRI+V EIG+P HVA N+LI DHIN WNW+KL  CCD+ML  +
Sbjct: 289  VLAKRTDNCFRMVVVGDPRIRVDEIGLPSHVAENMLIADHINLWNWDKLEVCCDFMLCHK 348

Query: 398  GNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLIALSVKILPIN 219
            GNFS++R+G+RITIW KDMLR GDS+ RPLIDGDIVLVNRPPSIHQHSLIALSVKILP  
Sbjct: 349  GNFSILRNGERITIWSKDMLRTGDSLRRPLIDGDIVLVNRPPSIHQHSLIALSVKILPTT 408

Query: 218  HVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQNGRNLLALGQ 39
             V+SINPLICSPF+GDFDGDCLHG+VPQS+NSRVEL EL SL  QLVNGQ+GRNLL+L Q
Sbjct: 409  SVVSINPLICSPFRGDFDGDCLHGYVPQSVNSRVELQELVSLDKQLVNGQSGRNLLSLAQ 468

Query: 38   DSLTAAYLFLED 3
            DSLTAA+L LED
Sbjct: 469  DSLTAAHLILED 480


>gb|EPS74753.1| hypothetical protein M569_00001, partial [Genlisea aurea]
          Length = 1380

 Score =  509 bits (1311), Expect = e-141
 Identities = 255/374 (68%), Positives = 314/374 (83%), Gaps = 3/374 (0%)
 Frame = -1

Query: 1115 GYPKMKFKVSSKDVFAKSAIIAEVSEALLSKSSNGSLASDYWDILPKDSSQEQSSLPSNK 936
            GYPKMKF+VS+++VFAK+AIIAEV E  +++     LASDYWDI+PKDS Q+QS +PSN+
Sbjct: 100  GYPKMKFRVSTREVFAKTAIIAEVQEMAVNQHHCIGLASDYWDIIPKDSPQDQSDIPSNR 159

Query: 935  RVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREFGQRIAVDETTKMY 756
            RVL P+QVY+ILKDVCP+TLEA  KRKN IF+NSLLVTPNS+RVREFG  I VD TT++Y
Sbjct: 160  RVLYPSQVYSILKDVCPKTLEALLKRKNSIFLNSLLVTPNSHRVREFGGHITVDGTTRLY 219

Query: 755  RKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASSASGLKNIKDLL 576
            RKL DFRG+ NEL+ARVLERY   KI SEK+S ++K+YEKQS+NDSASS+SGL+NIK+L+
Sbjct: 220  RKLTDFRGSANELNARVLERY---KICSEKVSAIEKIYEKQSSNDSASSSSGLRNIKELI 276

Query: 575  VGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLMPCCDYMLHRR- 399
            + KRTD++FRMVVVGDPR+KV EIG+P  +A +VLI D I+  +W KL   CD ML+++ 
Sbjct: 277  LAKRTDNAFRMVVVGDPRLKVDEIGLPIQIAESVLISDLISIHSWGKLESWCDLMLYKKA 336

Query: 398  --GNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLIALSVKILP 225
                FSVIR+GQ+  I+ KDML+ GDSI RP+ DGDIVL+NRPPSIHQHSL+ALSVK+LP
Sbjct: 337  PFSPFSVIRNGQKTHIFSKDMLQVGDSISRPISDGDIVLINRPPSIHQHSLLALSVKVLP 396

Query: 224  INHVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQNGRNLLAL 45
            I  V++INPL C P +GDFDGDCLHGFVPQS+NSRVE+ EL SLK QLVNGQNGR+L++L
Sbjct: 397  IKSVIAINPLTCLPLRGDFDGDCLHGFVPQSLNSRVEIGELASLKKQLVNGQNGRSLMSL 456

Query: 44   GQDSLTAAYLFLED 3
            GQDSLTAAYL L +
Sbjct: 457  GQDSLTAAYLILNN 470


>emb|CDP09818.1| unnamed protein product [Coffea canephora]
          Length = 1511

 Score =  455 bits (1171), Expect = e-125
 Identities = 232/373 (62%), Positives = 287/373 (76%), Gaps = 1/373 (0%)
 Frame = -1

Query: 1118 DGYPKMKFKVSSKDVFAKSAIIAEVSEALLS-KSSNGSLASDYWDILPKDSSQEQSSLPS 942
            D YP MKFKV+SKDVFAK+AI AEVSE   S +SSNGS+ASDYWDI+P D+ Q+ S+L S
Sbjct: 173  DSYPPMKFKVTSKDVFAKTAISAEVSERSSSNRSSNGSMASDYWDIIPSDAQQDLSNLGS 232

Query: 941  NKRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREFGQRIAVDETTK 762
            NKR+L  AQVYNILKDV PR LE+F KRK+ +F+N  L+TPN +RV E GQ I  D  TK
Sbjct: 233  NKRLLSHAQVYNILKDVDPRFLESFLKRKSSVFLNCFLLTPNCHRVTELGQHITFDTKTK 292

Query: 761  MYRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASSASGLKNIKD 582
            +Y+KLIDFRGT NELSARVL+  K+SK+RSEK S +   +      DSA + SGLK IK+
Sbjct: 293  LYKKLIDFRGTANELSARVLDLIKVSKVRSEKSSAINSAFSVLGFKDSAVATSGLKYIKE 352

Query: 581  LLVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLMPCCDYMLHR 402
            LL+GKRTDH+FRMVVVGDP I + EIG+P H+A  +L+ +H+N+WN+ KL      +L  
Sbjct: 353  LLLGKRTDHAFRMVVVGDPNINLGEIGMPRHIAEKLLVSEHVNKWNFGKLKDYVALILVG 412

Query: 401  RGNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLIALSVKILPI 222
             G   V R G+   +   D L  GD + RP++DGDIVL+NRPPSIHQHS+++LSV+ILPI
Sbjct: 413  GGEICVRRGGRLEKLSIIDKLCCGDVLYRPMLDGDIVLINRPPSIHQHSMLSLSVRILPI 472

Query: 221  NHVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQNGRNLLALG 42
            N VLSINPLICSP +GDFDGDCLHG+V QS++SRVELNEL +L  QL+NGQ+GRNLL+L 
Sbjct: 473  NSVLSINPLICSPLRGDFDGDCLHGYVSQSVDSRVELNELVALNKQLLNGQSGRNLLSLS 532

Query: 41   QDSLTAAYLFLED 3
             DSLTAA+L LED
Sbjct: 533  HDSLTAAHLILED 545


>ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana sylvestris] gi|698503797|ref|XP_009797464.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X1 [Nicotiana sylvestris]
            gi|698503800|ref|XP_009797465.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1 isoform X1 [Nicotiana
            sylvestris] gi|698503802|ref|XP_009797466.1| PREDICTED:
            DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana sylvestris] gi|698503804|ref|XP_009797467.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X1 [Nicotiana sylvestris]
          Length = 1447

 Score =  426 bits (1095), Expect = e-116
 Identities = 220/372 (59%), Positives = 280/372 (75%), Gaps = 1/372 (0%)
 Frame = -1

Query: 1115 GYPKMKFKVSSKDVFAKSAIIAEVSEALLSKSSNGSLASDYWDILPKDSSQEQSSLPSN- 939
            GYP MKFKVS KD+F ++AIIAEVSE  L ++S GSLASDYW+ +P D+ Q+ S   S  
Sbjct: 126  GYPPMKFKVSPKDMFGRTAIIAEVSEKKLQQTSGGSLASDYWNFIPDDAQQDASLNSSKY 185

Query: 938  KRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREFGQRIAVDETTKM 759
            K+VL  AQVY+ILKDV P  LE   +RKN IF+ S L+TPNS+RV EFGQ +  DE+ ++
Sbjct: 186  KKVLTHAQVYSILKDVDPGFLEGLLRRKNSIFLKSCLLTPNSHRVTEFGQHMIFDESNRL 245

Query: 758  YRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASSASGLKNIKDL 579
            YRKLIDFRGT N+LS  V  R K+SKIR+E+            TND  + A+GLK +K+L
Sbjct: 246  YRKLIDFRGTANDLSMCVFNRIKVSKIRAER----------SLTNDPNAPATGLKYVKEL 295

Query: 578  LVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLMPCCDYMLHRR 399
            ++ KRT+H+FRMVVVGDP IK+ EIG+P HVA ++ + + ++  NWEKL   CD M+ ++
Sbjct: 296  VLAKRTNHAFRMVVVGDPNIKLGEIGIPCHVAEDLHMAEPLSSRNWEKLSDHCDLMILQK 355

Query: 398  GNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLIALSVKILPIN 219
            G   V R+G  + I   D L+ GD I RPLIDGD+VL+NRPPSIHQHSLIALSV+ILPI 
Sbjct: 356  GAIHVRRNGVLVRISVMDQLQRGDIIYRPLIDGDVVLINRPPSIHQHSLIALSVRILPII 415

Query: 218  HVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQNGRNLLALGQ 39
             VLSINPL+CSPF+GDFDGDCLHG+VPQSI+SRVEL+EL  L  QL++GQ+G+NLL+L  
Sbjct: 416  SVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNRQLIDGQSGQNLLSLSH 475

Query: 38   DSLTAAYLFLED 3
            DSLTAA+L LE+
Sbjct: 476  DSLTAAHLILEE 487


>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Solanum tuberosum]
          Length = 1446

 Score =  425 bits (1093), Expect = e-116
 Identities = 220/374 (58%), Positives = 283/374 (75%), Gaps = 4/374 (1%)
 Frame = -1

Query: 1115 GYPKMKFKVSSKDVFAKSAIIAEVSEALLSK---SSNGSLASDYWDILPKDSSQEQSSLP 945
            GYP  KFKVS KD+F ++AIIAEV+E LL K   ++  SLASDYWD +P D+ QE S   
Sbjct: 127  GYPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQQTTGVSLASDYWDFIPYDAQQEASVNS 186

Query: 944  SN-KRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREFGQRIAVDET 768
            SN KRVL  AQVY+ILKD+ P  LE   KRKN IF+ S L+TPNS+RV EFGQ +  DE+
Sbjct: 187  SNYKRVLSHAQVYSILKDIDPGFLEGLLKRKNSIFLKSCLLTPNSHRVTEFGQHMIFDES 246

Query: 767  TKMYRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASSASGLKNI 588
             ++YRKLIDFRGT N+LS  VL+R K+SKIR+++             ND  + A+GLK +
Sbjct: 247  NRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADR----------SVINDPNAPATGLKYV 296

Query: 587  KDLLVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLMPCCDYML 408
            K+L++ KRT+H+FRMVVVGDP I++ EIG+P HVA N+ + + ++  NWE++   CD M+
Sbjct: 297  KELVLAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAESLSLRNWERMTDLCDLMI 356

Query: 407  HRRGNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLIALSVKIL 228
             +RG   V R+G  + I   D L+ GD I RPLIDGD+V++NRPPSIHQHSLIALSV+IL
Sbjct: 357  LQRGGILVRRNGVLVRISVMDRLQNGDIIHRPLIDGDVVMINRPPSIHQHSLIALSVRIL 416

Query: 227  PINHVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQNGRNLLA 48
            PIN VLSINPL+CSPF+GDFDGDCLHG++PQSI+SR+EL+EL +LK QL++GQNG+NLL+
Sbjct: 417  PINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSRIELSELVALKQQLLDGQNGQNLLS 476

Query: 47   LGQDSLTAAYLFLE 6
            L  DSLTAA+L LE
Sbjct: 477  LSHDSLTAAHLILE 490


>ref|XP_009593317.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana tomentosiformis]
          Length = 1447

 Score =  424 bits (1090), Expect = e-116
 Identities = 220/371 (59%), Positives = 278/371 (74%), Gaps = 1/371 (0%)
 Frame = -1

Query: 1115 GYPKMKFKVSSKDVFAKSAIIAEVSEALLSKSSNGSLASDYWDILPKDSSQEQSSLPSN- 939
            GYP MKFKVS KD+F K+AI+AEVSE  L ++  GSLASDYW+ +P D+ Q+ S   S  
Sbjct: 126  GYPPMKFKVSPKDMFGKTAIMAEVSEKKLQQTCGGSLASDYWNFIPDDAQQDASLNSSKY 185

Query: 938  KRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREFGQRIAVDETTKM 759
            KRVL  AQVY+ILKDV P  LE   +RKN IF+ S L+TPNS+RV EFGQ +  DE+ ++
Sbjct: 186  KRVLTHAQVYSILKDVDPGFLEGLLRRKNSIFLKSCLLTPNSHRVTEFGQHMIFDESNRL 245

Query: 758  YRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASSASGLKNIKDL 579
            YRKLIDFRGT N+LS  V  R K+SKIR+E+            TND  + A+GLK +K+L
Sbjct: 246  YRKLIDFRGTANDLSMCVFNRIKVSKIRAER----------SLTNDPNAPATGLKYVKEL 295

Query: 578  LVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLMPCCDYMLHRR 399
            ++ KRT+H+FRMVVVGDP IK+ EIG+P HVA ++ + + ++  NWEKL   CD M+ ++
Sbjct: 296  VLAKRTNHAFRMVVVGDPNIKLGEIGIPCHVAEDLHMAEPLSSRNWEKLTDHCDLMILQK 355

Query: 398  GNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLIALSVKILPIN 219
            G   V R+G  + I   D L+ GD I RPLIDGD+VL+NRPPSIHQHSLIALSV+ILPI 
Sbjct: 356  GAIHVRRNGVLVRISVMDQLQRGDIIYRPLIDGDVVLINRPPSIHQHSLIALSVRILPII 415

Query: 218  HVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQNGRNLLALGQ 39
             VLSINPL+CSPF+GDFDGDCLHG+VPQSI+SRVEL+EL  L  QL++GQ+G+NLL+L  
Sbjct: 416  SVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNRQLIDGQSGQNLLSLSH 475

Query: 38   DSLTAAYLFLE 6
            DSLTAA+L LE
Sbjct: 476  DSLTAAHLVLE 486


>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Solanum lycopersicum] gi|723724576|ref|XP_010325435.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X1 [Solanum lycopersicum]
          Length = 1446

 Score =  421 bits (1081), Expect = e-115
 Identities = 217/374 (58%), Positives = 282/374 (75%), Gaps = 4/374 (1%)
 Frame = -1

Query: 1115 GYPKMKFKVSSKDVFAKSAIIAEVSEALLSK---SSNGSLASDYWDILPKDSSQEQSSLP 945
            GYP  KFKVS KD+F ++AIIAEV+E LL K   ++  SLASDYWD +P D+ QE S   
Sbjct: 127  GYPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQKTTGVSLASDYWDFIPYDAQQEASVNS 186

Query: 944  SN-KRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREFGQRIAVDET 768
            SN KRVL  AQVY+ILKD+ P  LE   +RKN IF+ S L+TPNS+RV EFGQ +  DE+
Sbjct: 187  SNYKRVLSHAQVYSILKDIDPGFLEGLLRRKNSIFLKSCLLTPNSHRVTEFGQHMIFDES 246

Query: 767  TKMYRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASSASGLKNI 588
             ++YRKLIDFRGT N+LS  VL+R K+SKIR+++             ND  + A+GLK +
Sbjct: 247  NRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADR----------SVINDPNAPATGLKYV 296

Query: 587  KDLLVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLMPCCDYML 408
            K+L++ KRT+H+FRMVVVGDP I++ EIG+P HVA N+ + + ++  NWE++   CD M+
Sbjct: 297  KELVLAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAETLSLRNWERMTDLCDLMI 356

Query: 407  HRRGNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLIALSVKIL 228
             +RG   V R+G  + I   D L+ GD I RPL+DGD+V++NRPPSIHQHSLIALSV+IL
Sbjct: 357  LQRGGILVRRNGVLVRISVMDGLQKGDIIHRPLVDGDVVMINRPPSIHQHSLIALSVRIL 416

Query: 227  PINHVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQNGRNLLA 48
            PIN VLSINPL+CSPF+GDFDGDCLHG++PQSI+S +EL+EL +LK QL++GQNG+NLL+
Sbjct: 417  PINSVLSINPLVCSPFRGDFDGDCLHGYIPQSIDSTIELSELVALKQQLLDGQNGQNLLS 476

Query: 47   LGQDSLTAAYLFLE 6
            L  DSLTAA+L LE
Sbjct: 477  LSHDSLTAAHLILE 490


>ref|XP_011650451.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3
            [Cucumis sativus]
          Length = 1361

 Score =  408 bits (1048), Expect = e-111
 Identities = 207/382 (54%), Positives = 274/382 (71%), Gaps = 10/382 (2%)
 Frame = -1

Query: 1118 DGYPKMKFKVSSKDVFAKSAIIAEVSEALLSKS----SNGSLASDYWDILPKDSSQEQSS 951
            D YP M+FK+S+ D+F KS I+ EV E +  K     + G L SDYWD +PKD  QE+S 
Sbjct: 28   DWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESY 87

Query: 950  LPSNKRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREF------GQ 789
               N+++L  AQV+ +LKD+ P+ L+ F    + +F+NS  VTPNS+RV E       GQ
Sbjct: 88   CRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQ 147

Query: 788  RIAVDETTKMYRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASS 609
            R+  DE T+ Y+K++DFRGT NEL +RVL+  K+SK+  EKL N   VY+++   D+A+S
Sbjct: 148  RLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQNKDLVYQQKKIKDTATS 207

Query: 608  ASGLKNIKDLLVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLM 429
            +SGL+ IKD+++GKR+DH FRMVVVGDP I++ EIG+P HVA  + I +H++ WN +KL 
Sbjct: 208  SSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLS 267

Query: 428  PCCDYMLHRRGNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLI 249
              C   L  +G   V R+G+ + +     L  GD+I RPL DGDIVLVNRPPSIHQHSLI
Sbjct: 268  TSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDIVLVNRPPSIHQHSLI 327

Query: 248  ALSVKILPINHVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQ 69
            ALSVK+LP++ VLS+NPL CSPF+GDFDGDCLHG+VPQS+ +RVE+ EL SL  QL NGQ
Sbjct: 328  ALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDKQLTNGQ 387

Query: 68   NGRNLLALGQDSLTAAYLFLED 3
            +GRNLL+L  DSLTAA+L LED
Sbjct: 388  SGRNLLSLSHDSLTAAHLILED 409


>ref|XP_011650450.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Cucumis sativus]
          Length = 1362

 Score =  408 bits (1048), Expect = e-111
 Identities = 207/382 (54%), Positives = 274/382 (71%), Gaps = 10/382 (2%)
 Frame = -1

Query: 1118 DGYPKMKFKVSSKDVFAKSAIIAEVSEALLSKS----SNGSLASDYWDILPKDSSQEQSS 951
            D YP M+FK+S+ D+F KS I+ EV E +  K     + G L SDYWD +PKD  QE+S 
Sbjct: 29   DWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESY 88

Query: 950  LPSNKRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREF------GQ 789
               N+++L  AQV+ +LKD+ P+ L+ F    + +F+NS  VTPNS+RV E       GQ
Sbjct: 89   CRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQ 148

Query: 788  RIAVDETTKMYRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASS 609
            R+  DE T+ Y+K++DFRGT NEL +RVL+  K+SK+  EKL N   VY+++   D+A+S
Sbjct: 149  RLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQNKDLVYQQKKIKDTATS 208

Query: 608  ASGLKNIKDLLVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLM 429
            +SGL+ IKD+++GKR+DH FRMVVVGDP I++ EIG+P HVA  + I +H++ WN +KL 
Sbjct: 209  SSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLS 268

Query: 428  PCCDYMLHRRGNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLI 249
              C   L  +G   V R+G+ + +     L  GD+I RPL DGDIVLVNRPPSIHQHSLI
Sbjct: 269  TSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDIVLVNRPPSIHQHSLI 328

Query: 248  ALSVKILPINHVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQ 69
            ALSVK+LP++ VLS+NPL CSPF+GDFDGDCLHG+VPQS+ +RVE+ EL SL  QL NGQ
Sbjct: 329  ALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDKQLTNGQ 388

Query: 68   NGRNLLALGQDSLTAAYLFLED 3
            +GRNLL+L  DSLTAA+L LED
Sbjct: 389  SGRNLLSLSHDSLTAAHLILED 410


>ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Cucumis sativus] gi|778675671|ref|XP_011650448.1|
            PREDICTED: DNA-directed RNA polymerase IV subunit 1
            isoform X1 [Cucumis sativus]
            gi|778675673|ref|XP_011650449.1| PREDICTED: DNA-directed
            RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus]
            gi|700200830|gb|KGN55963.1| hypothetical protein
            Csa_3G039340 [Cucumis sativus]
          Length = 1483

 Score =  408 bits (1048), Expect = e-111
 Identities = 207/382 (54%), Positives = 274/382 (71%), Gaps = 10/382 (2%)
 Frame = -1

Query: 1118 DGYPKMKFKVSSKDVFAKSAIIAEVSEALLSKS----SNGSLASDYWDILPKDSSQEQSS 951
            D YP M+FK+S+ D+F KS I+ EV E +  K     + G L SDYWD +PKD  QE+S 
Sbjct: 150  DWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESY 209

Query: 950  LPSNKRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREF------GQ 789
               N+++L  AQV+ +LKD+ P+ L+ F    + +F+NS  VTPNS+RV E       GQ
Sbjct: 210  CRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQ 269

Query: 788  RIAVDETTKMYRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASS 609
            R+  DE T+ Y+K++DFRGT NEL +RVL+  K+SK+  EKL N   VY+++   D+A+S
Sbjct: 270  RLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQNKDLVYQQKKIKDTATS 329

Query: 608  ASGLKNIKDLLVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLM 429
            +SGL+ IKD+++GKR+DH FRMVVVGDP I++ EIG+P HVA  + I +H++ WN +KL 
Sbjct: 330  SSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLS 389

Query: 428  PCCDYMLHRRGNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLI 249
              C   L  +G   V R+G+ + +     L  GD+I RPL DGDIVLVNRPPSIHQHSLI
Sbjct: 390  TSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDIVLVNRPPSIHQHSLI 449

Query: 248  ALSVKILPINHVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQ 69
            ALSVK+LP++ VLS+NPL CSPF+GDFDGDCLHG+VPQS+ +RVE+ EL SL  QL NGQ
Sbjct: 450  ALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDKQLTNGQ 509

Query: 68   NGRNLLALGQDSLTAAYLFLED 3
            +GRNLL+L  DSLTAA+L LED
Sbjct: 510  SGRNLLSLSHDSLTAAHLILED 531


>ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3 [Vitis
            vinifera]
          Length = 1354

 Score =  407 bits (1045), Expect = e-110
 Identities = 209/382 (54%), Positives = 274/382 (71%), Gaps = 10/382 (2%)
 Frame = -1

Query: 1118 DGYPKMKFKVSSKDVFAKSAIIAEVSEALLSKSSNGS----LASDYWDILPKDSSQEQSS 951
            D YP MKFKVSSKD+F K+AII E++E L  K    S    L  DYWD +PKD  QE++ 
Sbjct: 28   DWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENC 87

Query: 950  LPSNKRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREF------GQ 789
            L  N+RVL  AQV+ +LKD+ P  ++ F  R +  F+N L VTPN++RV E       GQ
Sbjct: 88   LNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQ 147

Query: 788  RIAVDETTKMYRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASS 609
             +  D+ ++ Y+KL+DFRGT NELS RVL+  K SK+RSEK           ++ DSAS 
Sbjct: 148  TLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEK----------STSKDSASK 197

Query: 608  ASGLKNIKDLLVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLM 429
             SGLK IK++L+GKRT+HSFRM+VVGDP++++ EIG+P H+A  +LI +H+N WNWEK+ 
Sbjct: 198  MSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVT 257

Query: 428  PCCDYMLHRRGNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLI 249
              C+  L  +G   V R G    +   +  +AGD I RPL DGDIVL+NRPPSIHQHS+I
Sbjct: 258  NGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVI 317

Query: 248  ALSVKILPINHVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQ 69
            ALSVK+LP+N V+SINPL CSPF+GDFDGDCLHG++PQS++SRVEL+EL +L  QL+N Q
Sbjct: 318  ALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQ 377

Query: 68   NGRNLLALGQDSLTAAYLFLED 3
            +GRNLL+L QDSL+AA+L +ED
Sbjct: 378  SGRNLLSLSQDSLSAAHLVMED 399


>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
            vinifera]
          Length = 1458

 Score =  407 bits (1045), Expect = e-110
 Identities = 209/382 (54%), Positives = 274/382 (71%), Gaps = 10/382 (2%)
 Frame = -1

Query: 1118 DGYPKMKFKVSSKDVFAKSAIIAEVSEALLSKSSNGS----LASDYWDILPKDSSQEQSS 951
            D YP MKFKVSSKD+F K+AII E++E L  K    S    L  DYWD +PKD  QE++ 
Sbjct: 134  DWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENC 193

Query: 950  LPSNKRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREF------GQ 789
            L  N+RVL  AQV+ +LKD+ P  ++ F  R +  F+N L VTPN++RV E       GQ
Sbjct: 194  LNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQ 253

Query: 788  RIAVDETTKMYRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASS 609
             +  D+ ++ Y+KL+DFRGT NELS RVL+  K SK+RSEK           ++ DSAS 
Sbjct: 254  TLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEK----------STSKDSASK 303

Query: 608  ASGLKNIKDLLVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLM 429
             SGLK IK++L+GKRT+HSFRM+VVGDP++++ EIG+P H+A  +LI +H+N WNWEK+ 
Sbjct: 304  MSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVT 363

Query: 428  PCCDYMLHRRGNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLI 249
              C+  L  +G   V R G    +   +  +AGD I RPL DGDIVL+NRPPSIHQHS+I
Sbjct: 364  NGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVI 423

Query: 248  ALSVKILPINHVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQ 69
            ALSVK+LP+N V+SINPL CSPF+GDFDGDCLHG++PQS++SRVEL+EL +L  QL+N Q
Sbjct: 424  ALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQ 483

Query: 68   NGRNLLALGQDSLTAAYLFLED 3
            +GRNLL+L QDSL+AA+L +ED
Sbjct: 484  SGRNLLSLSQDSLSAAHLVMED 505


>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Vitis
            vinifera]
          Length = 1460

 Score =  407 bits (1045), Expect = e-110
 Identities = 209/382 (54%), Positives = 274/382 (71%), Gaps = 10/382 (2%)
 Frame = -1

Query: 1118 DGYPKMKFKVSSKDVFAKSAIIAEVSEALLSKSSNGS----LASDYWDILPKDSSQEQSS 951
            D YP MKFKVSSKD+F K+AII E++E L  K    S    L  DYWD +PKD  QE++ 
Sbjct: 134  DWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENC 193

Query: 950  LPSNKRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREF------GQ 789
            L  N+RVL  AQV+ +LKD+ P  ++ F  R +  F+N L VTPN++RV E       GQ
Sbjct: 194  LNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQ 253

Query: 788  RIAVDETTKMYRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASS 609
             +  D+ ++ Y+KL+DFRGT NELS RVL+  K SK+RSEK           ++ DSAS 
Sbjct: 254  TLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEK----------STSKDSASK 303

Query: 608  ASGLKNIKDLLVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLM 429
             SGLK IK++L+GKRT+HSFRM+VVGDP++++ EIG+P H+A  +LI +H+N WNWEK+ 
Sbjct: 304  MSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVT 363

Query: 428  PCCDYMLHRRGNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLI 249
              C+  L  +G   V R G    +   +  +AGD I RPL DGDIVL+NRPPSIHQHS+I
Sbjct: 364  NGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVI 423

Query: 248  ALSVKILPINHVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQ 69
            ALSVK+LP+N V+SINPL CSPF+GDFDGDCLHG++PQS++SRVEL+EL +L  QL+N Q
Sbjct: 424  ALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQ 483

Query: 68   NGRNLLALGQDSLTAAYLFLED 3
            +GRNLL+L QDSL+AA+L +ED
Sbjct: 484  SGRNLLSLSQDSLSAAHLVMED 505


>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
            cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
            polymerase II subunit RPB1-B, putative [Theobroma cacao]
          Length = 1484

 Score =  406 bits (1043), Expect = e-110
 Identities = 210/383 (54%), Positives = 271/383 (70%), Gaps = 11/383 (2%)
 Frame = -1

Query: 1118 DGYPKMKFKVSSKDVFAKSAIIAEVSEAL---LSKSSNGSLASDYWDILPKDSSQEQSSL 948
            D YP M FK+SSKD+F KSAII EVSE     + K    +L SDYWD +PKD  QE+S +
Sbjct: 137  DWYPPMNFKISSKDLFRKSAIIVEVSEKSSMKVRKRGKQALPSDYWDFIPKDEQQEESLI 196

Query: 947  PSNKRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREF------GQR 786
              N+RVL  +QV  +LKDV P  ++ F    + IF+N   VTPNS+RV E       GQR
Sbjct: 197  RPNRRVLSHSQVRYLLKDVDPEFIKKFVLSMDSIFLNCFPVTPNSHRVTEIMHASSNGQR 256

Query: 785  IAVDETTKMYRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQK--VYEKQSTNDSAS 612
            +  D+ T++Y+KL DFRG  NELS+ VLE  K+SK+  EK SN +   V  ++   DSAS
Sbjct: 257  LIFDQRTRVYKKLADFRGIANELSSHVLECLKISKLHLEKPSNEESALVLAQKRNKDSAS 316

Query: 611  SASGLKNIKDLLVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKL 432
            + SGL+ +KD+++GKR DH FRMV+ G+P +K+ EI +P HVA  + I + +N WN E+L
Sbjct: 317  NMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEISIPCHVAERLQIAEQLNNWNEERL 376

Query: 431  MPCCDYMLHRRGNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSL 252
              CCD  L  +G   V R+G+ + I   + L+ GD+I RPL +GDI+L+NRPPSIHQHSL
Sbjct: 377  KACCDLRLLEKGEIHVRREGRLVRIRHNEKLQVGDTIFRPLNNGDIILINRPPSIHQHSL 436

Query: 251  IALSVKILPINHVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNG 72
            IALSVK+LP++ V+SINPLICSPF+GDFDGDCLHG+VPQSI +RVEL EL SL  QL+NG
Sbjct: 437  IALSVKVLPVSSVVSINPLICSPFRGDFDGDCLHGYVPQSIKARVELIELVSLNRQLING 496

Query: 71   QNGRNLLALGQDSLTAAYLFLED 3
            Q+GRNLL+L  DSLTAAYL  ED
Sbjct: 497  QSGRNLLSLSHDSLTAAYLVKED 519


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  405 bits (1040), Expect = e-110
 Identities = 210/382 (54%), Positives = 275/382 (71%), Gaps = 10/382 (2%)
 Frame = -1

Query: 1118 DGYPKMKFKVSSKDVFAKSAIIAEVSEALLSKSSNGS----LASDYWDILPKDSSQEQSS 951
            D YP MKFKVSSKD+F K+AII E++E L  K    S    L  DYWD +PKD  QE++ 
Sbjct: 134  DWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENC 193

Query: 950  LPSNKRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREF------GQ 789
            L  N+RVL  AQV+ +LKD+ P  ++ F  R +  F+N L VTPN++RV E       GQ
Sbjct: 194  LNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQ 253

Query: 788  RIAVDETTKMYRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASS 609
             +  D+ ++ Y+KL+DFRGT NELS RVL+  K SK      SNL+   EK ++ DSAS 
Sbjct: 254  TLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKA-----SNLRS--EKSTSKDSASK 306

Query: 608  ASGLKNIKDLLVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLM 429
             SGLK IK++L+GKRT+HSFRM+VVGDP++++ EIG+P H+A  +LI +H+N WNWEK+ 
Sbjct: 307  MSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVT 366

Query: 428  PCCDYMLHRRGNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLI 249
              C+  L  +G   V R G    +   +  +AGD I RPL DGDIVL+NRPPSIHQHS+I
Sbjct: 367  NGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVI 426

Query: 248  ALSVKILPINHVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQ 69
            ALSVK+LP+N V+SINPL CSPF+GDFDGDCLHG++PQS++SRVEL+EL +L  QL+N Q
Sbjct: 427  ALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQ 486

Query: 68   NGRNLLALGQDSLTAAYLFLED 3
            +GRNLL+L QDSL+AA+L +ED
Sbjct: 487  SGRNLLSLSQDSLSAAHLVMED 508


>ref|XP_010325436.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Solanum lycopersicum]
          Length = 1307

 Score =  400 bits (1029), Expect = e-109
 Identities = 207/361 (57%), Positives = 272/361 (75%), Gaps = 4/361 (1%)
 Frame = -1

Query: 1076 VFAKSAIIAEVSEALLSK---SSNGSLASDYWDILPKDSSQEQSSLPSN-KRVLMPAQVY 909
            +F ++AIIAEV+E LL K   ++  SLASDYWD +P D+ QE S   SN KRVL  AQVY
Sbjct: 1    MFGRTAIIAEVNENLLKKVQKTTGVSLASDYWDFIPYDAQQEASVNSSNYKRVLSHAQVY 60

Query: 908  NILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREFGQRIAVDETTKMYRKLIDFRGT 729
            +ILKD+ P  LE   +RKN IF+ S L+TPNS+RV EFGQ +  DE+ ++YRKLIDFRGT
Sbjct: 61   SILKDIDPGFLEGLLRRKNSIFLKSCLLTPNSHRVTEFGQHMIFDESNRLYRKLIDFRGT 120

Query: 728  PNELSARVLERYKLSKIRSEKLSNLQKVYEKQSTNDSASSASGLKNIKDLLVGKRTDHSF 549
             N+LS  VL+R K+SKIR+++             ND  + A+GLK +K+L++ KRT+H+F
Sbjct: 121  ANDLSMCVLDRIKVSKIRADR----------SVINDPNAPATGLKYVKELVLAKRTNHAF 170

Query: 548  RMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLMPCCDYMLHRRGNFSVIRDGQ 369
            RMVVVGDP I++ EIG+P HVA N+ + + ++  NWE++   CD M+ +RG   V R+G 
Sbjct: 171  RMVVVGDPNIELGEIGIPCHVAENLHMAETLSLRNWERMTDLCDLMILQRGGILVRRNGV 230

Query: 368  RITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLIALSVKILPINHVLSINPLIC 189
             + I   D L+ GD I RPL+DGD+V++NRPPSIHQHSLIALSV+ILPIN VLSINPL+C
Sbjct: 231  LVRISVMDGLQKGDIIHRPLVDGDVVMINRPPSIHQHSLIALSVRILPINSVLSINPLVC 290

Query: 188  SPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQNGRNLLALGQDSLTAAYLFL 9
            SPF+GDFDGDCLHG++PQSI+S +EL+EL +LK QL++GQNG+NLL+L  DSLTAA+L L
Sbjct: 291  SPFRGDFDGDCLHGYIPQSIDSTIELSELVALKQQLLDGQNGQNLLSLSHDSLTAAHLIL 350

Query: 8    E 6
            E
Sbjct: 351  E 351


>ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
            [Gossypium raimondii]
          Length = 1300

 Score =  400 bits (1028), Expect = e-108
 Identities = 203/381 (53%), Positives = 269/381 (70%), Gaps = 11/381 (2%)
 Frame = -1

Query: 1112 YPKMKFKVSSKDVFAKSAIIAEVSEALLSK---SSNGSLASDYWDILPKDSSQEQSSLPS 942
            YP M+FK++SK++F KSAI+ EVSE  L K       +L +DYWD +PKD  QE+  +  
Sbjct: 139  YPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPADYWDFIPKDQQQEEGFVKP 198

Query: 941  NKRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREF------GQRIA 780
             +RVL  AQV ++LKDV P  ++ F    + IF+N   VTPNS+RV E        QR+ 
Sbjct: 199  GRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSHRVTEIMHTSSNAQRLI 258

Query: 779  VDETTKMYRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQK--VYEKQSTNDSASSA 606
             DE T++Y+KL+DFRG  NELS+ VLE  K+SK+  EK S      +   +   DSAS+ 
Sbjct: 259  FDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTEDSALIAALKKNKDSASNM 318

Query: 605  SGLKNIKDLLVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLMP 426
            SGL+ +KD+++GKR DH FRMV+ G+P +K+ EIG+P HVA  + I + +N WN E+L  
Sbjct: 319  SGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQIAEQLNRWNEERLKT 378

Query: 425  CCDYMLHRRGNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLIA 246
            CC+  +  +G   + R+G+ + I   + ++ GD+I RPL DGD VL+NRPPSIHQHSLIA
Sbjct: 379  CCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGDTVLINRPPSIHQHSLIA 438

Query: 245  LSVKILPINHVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQN 66
            LSVK+LP+N V+SINPLICSPF+GDFDGDCLHG+VPQSIN+RVEL+EL SL  QL+NGQ+
Sbjct: 439  LSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLDRQLINGQS 498

Query: 65   GRNLLALGQDSLTAAYLFLED 3
            GRNLL+L  DSLTAAYL  ED
Sbjct: 499  GRNLLSLSHDSLTAAYLVKED 519


>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
          Length = 1478

 Score =  400 bits (1028), Expect = e-108
 Identities = 203/381 (53%), Positives = 269/381 (70%), Gaps = 11/381 (2%)
 Frame = -1

Query: 1112 YPKMKFKVSSKDVFAKSAIIAEVSEALLSK---SSNGSLASDYWDILPKDSSQEQSSLPS 942
            YP M+FK++SK++F KSAI+ EVSE  L K       +L +DYWD +PKD  QE+  +  
Sbjct: 136  YPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPADYWDFIPKDQQQEEGFVKP 195

Query: 941  NKRVLMPAQVYNILKDVCPRTLEAFFKRKNLIFVNSLLVTPNSYRVREF------GQRIA 780
             +RVL  AQV ++LKDV P  ++ F    + IF+N   VTPNS+RV E        QR+ 
Sbjct: 196  GRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSHRVTEIMHTSSNAQRLI 255

Query: 779  VDETTKMYRKLIDFRGTPNELSARVLERYKLSKIRSEKLSNLQK--VYEKQSTNDSASSA 606
             DE T++Y+KL+DFRG  NELS+ VLE  K+SK+  EK S      +   +   DSAS+ 
Sbjct: 256  FDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTEDSALIAALKKNKDSASNM 315

Query: 605  SGLKNIKDLLVGKRTDHSFRMVVVGDPRIKVHEIGVPFHVA*NVLIRDHINEWNWEKLMP 426
            SGL+ +KD+++GKR DH FRMV+ G+P +K+ EIG+P HVA  + I + +N WN E+L  
Sbjct: 316  SGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQIAEQLNRWNEERLKT 375

Query: 425  CCDYMLHRRGNFSVIRDGQRITIWFKDMLRAGDSICRPLIDGDIVLVNRPPSIHQHSLIA 246
            CC+  +  +G   + R+G+ + I   + ++ GD+I RPL DGD VL+NRPPSIHQHSLIA
Sbjct: 376  CCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGDTVLINRPPSIHQHSLIA 435

Query: 245  LSVKILPINHVLSINPLICSPFQGDFDGDCLHGFVPQSINSRVELNELCSLKTQLVNGQN 66
            LSVK+LP+N V+SINPLICSPF+GDFDGDCLHG+VPQSIN+RVEL+EL SL  QL+NGQ+
Sbjct: 436  LSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLDRQLINGQS 495

Query: 65   GRNLLALGQDSLTAAYLFLED 3
            GRNLL+L  DSLTAAYL  ED
Sbjct: 496  GRNLLSLSHDSLTAAYLVKED 516