BLASTX nr result

ID: Perilla23_contig00011347 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Perilla23_contig00011347
         (4089 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012845534.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA...  1240   0.0  
ref|XP_011078257.1| PREDICTED: probable RNA-dependent RNA polyme...  1214   0.0  
gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza]  1129   0.0  
ref|XP_011093632.1| PREDICTED: probable RNA-dependent RNA polyme...  1110   0.0  
gb|EYU30717.1| hypothetical protein MIMGU_mgv1a001145mg [Erythra...  1064   0.0  
emb|CDP03267.1| unnamed protein product [Coffea canephora]            910   0.0  
ref|XP_009780069.1| PREDICTED: probable RNA-dependent RNA polyme...   871   0.0  
ref|XP_009780070.1| PREDICTED: probable RNA-dependent RNA polyme...   864   0.0  
ref|XP_009592436.1| PREDICTED: probable RNA-dependent RNA polyme...   861   0.0  
ref|XP_010322170.1| PREDICTED: probable RNA-dependent RNA polyme...   852   0.0  
ref|XP_009592437.1| PREDICTED: probable RNA-dependent RNA polyme...   851   0.0  
ref|XP_009760371.1| PREDICTED: probable RNA-dependent RNA polyme...   835   0.0  
ref|XP_010313737.1| PREDICTED: probable RNA-dependent RNA polyme...   834   0.0  
ref|XP_009760370.1| PREDICTED: probable RNA-dependent RNA polyme...   834   0.0  
ref|XP_009603362.1| PREDICTED: probable RNA-dependent RNA polyme...   823   0.0  
ref|XP_009603361.1| PREDICTED: probable RNA-dependent RNA polyme...   822   0.0  
emb|CDP03268.1| unnamed protein product [Coffea canephora]            813   0.0  
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme...   805   0.0  
ref|XP_010656269.1| PREDICTED: probable RNA-dependent RNA polyme...   793   0.0  
ref|XP_009760372.1| PREDICTED: probable RNA-dependent RNA polyme...   791   0.0  

>ref|XP_012845534.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase
            5 [Erythranthe guttatus]
          Length = 1040

 Score = 1240 bits (3208), Expect = 0.0
 Identities = 633/1034 (61%), Positives = 777/1034 (75%), Gaps = 31/1034 (2%)
 Frame = -1

Query: 3963 DVRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPIKTFSGF 3784
            D+RLP+ VE  I+ + +EK   PL   ARK+L +IGEQ S+++L  +LSS+ PIK+FSGF
Sbjct: 11   DIRLPKKVEMTIQTICLEKNQPPLKNYARKMLAEIGEQASMEVLTEILSSNQPIKSFSGF 70

Query: 3783 VSFLVKQKYPIHKSP-----SSASPLGLR--SPSSASPNIARNGEGLQSPLS-------- 3649
            VSF+VK+ YP+  +       S+SP   +  SPSS SP+  RNGE L+SPLS        
Sbjct: 71   VSFMVKKDYPVQAAAVLAAYDSSSPQSQKMWSPSSTSPH-TRNGENLESPLSRLSMNSIT 129

Query: 3648 -NLQRTGFQNISCQLSFEDETLESRSCLVRDVSSLSGEHGEMTESVTISPQLLILNKLEY 3472
             NL  T  Q++ C+LSFEDET E+RS    +  +      E+ E +TI+ QL+ LNKLEY
Sbjct: 130  SNLHSTSPQSVGCRLSFEDETQENRS---PNCGTSQPSVPEVKEPITITQQLITLNKLEY 186

Query: 3471 RKLFLLLSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEESDRSQYL 3292
            RKLFL+LSYI R KLE V+T++DA+E++ M    M  FE  IW +YG++F +ESDRSQYL
Sbjct: 187  RKLFLVLSYIGREKLEDVVTVEDADEIYRMNEFPMQAFENKIWKKYGQRFYDESDRSQYL 246

Query: 3291 DWDSGKTHFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSVDGKYSAEKIV 3112
            DWDSGKTH YYCHV  DG YYFKGPYLNS++THLQRSLGD+N+LIVKF  DG +    I 
Sbjct: 247  DWDSGKTHVYYCHVYQDGRYYFKGPYLNSMKTHLQRSLGDDNILIVKFLEDGAFGTGNIA 306

Query: 3111 EQXXXXXXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSISTHGNEENYIL 2932
            ++             FKD+RKKV KN+  ++K  TYS+V+ +FV  DS+S  G +ENYIL
Sbjct: 307  QEGILVGLRRYRFFVFKDDRKKVNKNQSDKEKKATYSNVRCFFVRVDSVSPSGYDENYIL 366

Query: 2931 SRKSVSEARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDIIEDIPFQDENG 2752
            SRK++ EARR+FMHIHT+S++EK MAR SLILSK+ KL ++ AA+ ++ I+DIPFQDE G
Sbjct: 367  SRKTIGEARRMFMHIHTISSIEKCMARLSLILSKSIKLEINLAAVIIEKIKDIPFQDEGG 426

Query: 2751 SIIHDEDGKPILHTDGTGYISEDLAM---------KYITNSSSE----FATFGGTVCQER 2611
             +IHDEDGKPILHTDGTGYISEDLA+         KY T+   E    FA F     Q R
Sbjct: 427  FVIHDEDGKPILHTDGTGYISEDLAIRCQICFSAPKYGTDDRFEKNDHFADFADIASQVR 486

Query: 2610 GAAARINEPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQSEETL 2431
             A +R  E PLL+QCR+FH+GYAVKGTLL+NRKLEPG IQIRPSMIKVE+D  ++ EE  
Sbjct: 487  EAESRNKEAPLLVQCRIFHEGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDHNIKVEEAF 546

Query: 2430 NSLEIVNISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRSALRVA 2251
            NSLEIVNISH+P RN LSKYLIALLSYGGVPQEFFLNL++N L + +NVY+NRR+ALRVA
Sbjct: 547  NSLEIVNISHKPGRNCLSKYLIALLSYGGVPQEFFLNLVANTLEDARNVYTNRRAALRVA 606

Query: 2250 SLHDGLYWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYLMGTAD 2071
            S H GL +GF AQRMICSGVPL+EPYLQ CL N+            +P++ESFYLMGTAD
Sbjct: 607  SNHAGLDYGFLAQRMICSGVPLDEPYLQLCLSNLENGEKTKLKTGKIPLNESFYLMGTAD 666

Query: 2070 PTGVLNNDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAKYGVFF 1891
            PTGVLNNDEVCVIL +GQISGKVLVYRNPGMHFGD+HVMEA+YVKELE+FVGNAKYGVFF
Sbjct: 667  PTGVLNNDEVCVILGNGQISGKVLVYRNPGMHFGDVHVMEAVYVKELEEFVGNAKYGVFF 726

Query: 1890 STKGQKSAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQKSSN- 1714
            STKG  SAAYEMATGDFDGD+YW+SRNPELLK+FKA++PW+RV S PD++K+NP++ S+ 
Sbjct: 727  STKGATSAAYEMATGDFDGDMYWVSRNPELLKYFKASKPWKRVLSAPDSKKKNPKEFSDX 786

Query: 1713 -XXXXXXXXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKDSLKRKMIKLIDIYY 1537
                       EAR PS++M  AADSWL +MDRLL+LGDDR  EK SL +KMI+L+DIYY
Sbjct: 787  ELENELFQLCLEARTPSFNMATAADSWLTFMDRLLTLGDDRTAEKKSLMKKMIRLVDIYY 846

Query: 1536 DALDAPKSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFHDEAPPRRQ 1357
            DALDAPKSGKKV VP +LRAEM+PHHM K  ++SY SSS+LG+IYD V    ++  PR+ 
Sbjct: 847  DALDAPKSGKKVKVPEELRAEMYPHHMEKGSELSYHSSSVLGQIYDRVDALKNDFVPRK- 905

Query: 1356 EIWKLPCFDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKKYKQMLYEA 1177
            EIWKLPCFDV I E +V  WK+ Y+ YRREM + L            +VIKKYKQ+LYEA
Sbjct: 906  EIWKLPCFDVPIPEIYVKMWKSRYESYRREMTKALKSGNESRNDAADEVIKKYKQLLYEA 965

Query: 1176 PDMEESAKDTQVIYEEAVAIYHVTYNYASMYGVEKCGFAWKVAGSALCSLCAWKSAALNE 997
             DMEESAK ++VIY+EA+AIYHVTY+YA  +GVEKC FAW++A SALC+LCAWK A   E
Sbjct: 966  GDMEESAKSSEVIYDEAIAIYHVTYDYAMEHGVEKCNFAWRIAASALCNLCAWKLAGPRE 1025

Query: 996  KPVTILPSVLRSLL 955
            KP+ ILPS+LR LL
Sbjct: 1026 KPLPILPSLLRELL 1039


>ref|XP_011078257.1| PREDICTED: probable RNA-dependent RNA polymerase 5 [Sesamum indicum]
          Length = 1036

 Score = 1214 bits (3142), Expect = 0.0
 Identities = 651/1036 (62%), Positives = 770/1036 (74%), Gaps = 29/1036 (2%)
 Frame = -1

Query: 3975 SPHVDVRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPIKT 3796
            SP  +VRLPE VE II+R+ +EK   PL   AR +L +IGEQ +L++L TVLSS + I++
Sbjct: 5    SPDQEVRLPEPVEMIIQRICLEKNQPPLKKYARNMLAEIGEQAALEVLTTVLSSKT-IRS 63

Query: 3795 FSGFVSFLVKQKYPIHKSPSSASPLGLRSPSSASPNIARNG---EGLQSPLS-------- 3649
            F G+V+FLVK+ +P +++ +  S  G     S SPN + +    E L+SP+S        
Sbjct: 64   FGGYVAFLVKKDFP-NQAAAVLSAYGSPHQCSTSPNKSPHTPYYERLRSPVSSFSVDSIP 122

Query: 3648 -NLQRTGFQNISCQLSFEDETLESRSCLVRDVSSLSGEHGEMTESVTISPQLLILNKLEY 3472
             NL +TG QNI C LSFE+ETLE      R  S L  E  EMT+SVTIS QL+IL++L++
Sbjct: 123  SNLNKTGPQNIRCNLSFENETLEKSCPGARCQSPLPDELREMTDSVTISQQLMILSQLQF 182

Query: 3471 RKLFLLLSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEESDRSQYL 3292
            RKLFL+LSYI R KLEAV+ +D ANE++SMK L M +FE  IW  YG+KFCEESDRSQYL
Sbjct: 183  RKLFLVLSYIGRQKLEAVVNLDGANEIYSMKDLPMNDFEAKIWNSYGKKFCEESDRSQYL 242

Query: 3291 DWDSGKTHFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSVDGKYS-AEKI 3115
            DWDS KTH YYCHV  DGSYYFKGPYLNS RTHLQRSLGD+++LIVKF  D   +    +
Sbjct: 243  DWDSQKTHHYYCHVCRDGSYYFKGPYLNSFRTHLQRSLGDDSILIVKFLEDDSNTMGSSV 302

Query: 3114 VEQXXXXXXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSISTHGNEENYI 2935
            VE+             FKDERKKVKK +  E K+ TYS VK Y+V  DS+  HG EE YI
Sbjct: 303  VEEGILVGLRRYRFFVFKDERKKVKKIQMVEKKS-TYSAVKGYYVRVDSVCPHGYEEGYI 361

Query: 2934 LSRKSVSEARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDIIEDIPFQDEN 2755
            LSRK++SEARRLFMHIHT+ST+EKYMARFSLILSKT KL +DF A+T+  IEDIPF+DEN
Sbjct: 362  LSRKTISEARRLFMHIHTVSTIEKYMARFSLILSKTRKLDIDFKAVTIQRIEDIPFRDEN 421

Query: 2754 GSIIHDEDGKPILHTDGTGYISEDLAMKY---------ITNSS----SEFATFGGTVCQE 2614
             SIIHDEDGKPILHTDGTGYIS DLAMK          IT++S     E      T CQ+
Sbjct: 422  DSIIHDEDGKPILHTDGTGYISVDLAMKCPRSFSLANDITDNSFEKYEEIVNIEDTACQK 481

Query: 2613 RGAAARINEPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQSEET 2434
            RGA AR  EPPLLIQCRLF+DG AVKGTLL+NRKLEPG IQIRPSMIKVE+DQ L   ET
Sbjct: 482  RGAEARNKEPPLLIQCRLFYDGCAVKGTLLINRKLEPGTIQIRPSMIKVERDQKLPLGET 541

Query: 2433 LNSLEIVNISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRSALRV 2254
              SLEIV  S RP RN LSKYLIALLSYGGVPQEFF NLL+NAL ET+NVYS+ R+ALRV
Sbjct: 542  FKSLEIVATSRRPGRNALSKYLIALLSYGGVPQEFFCNLLTNALEETRNVYSDTRAALRV 601

Query: 2253 ASLHDGLYWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYLMGTA 2074
            AS +DGL  G  A+RMI SG+PL+EPYLQHCL ++            +PVSESFYLMGTA
Sbjct: 602  ASNYDGLEVGVVARRMISSGIPLSEPYLQHCLSSLESGEKIKLKQGKIPVSESFYLMGTA 661

Query: 2073 DPTGVLNNDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAKYGVF 1894
            DPTGVL N EVCVILD+GQISGKVLVYRNPGMHFGD+HVMEA+Y +ELE+ VGNAKYG+F
Sbjct: 662  DPTGVLKNHEVCVILDNGQISGKVLVYRNPGMHFGDVHVMEAVYKEELEEVVGNAKYGIF 721

Query: 1893 FSTKGQKSAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVP-DAEKRNPQKSS 1717
            FSTKG++SAAYEMATGDFDGD+YW+SRNPELLK+FKA+EPW+R YS P D++ RNP++ S
Sbjct: 722  FSTKGKRSAAYEMATGDFDGDMYWVSRNPELLKYFKASEPWKRFYSTPADSKIRNPREFS 781

Query: 1716 N--XXXXXXXXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKDSLKRKMIKLIDI 1543
            +            EAR PS+SM  AADSWL +MDRLL+LGDD A EK SLK+K+I+LIDI
Sbjct: 782  DMELEHELFQLFQEAREPSFSMATAADSWLTFMDRLLTLGDDCASEKLSLKKKIIQLIDI 841

Query: 1542 YYDALDAPKSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFHDEAPPR 1363
            YYDALDAPKSGKKV VPN+LRAEM+PHHM +  + SY SSSILG+IYD V  F ++A P 
Sbjct: 842  YYDALDAPKSGKKVKVPNELRAEMYPHHMERGAEFSYNSSSILGRIYDKVQAFKNDAVPG 901

Query: 1362 RQEIWKLPCFDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKKYKQMLY 1183
            + EIWKLP  D  I E ++ +WK  Y  YR EM   +            DVI KYKQ+LY
Sbjct: 902  K-EIWKLPFLDDPIPELYL-KWKARYKDYREEMTSAMKSSDESKDLAARDVIHKYKQLLY 959

Query: 1182 EAPDMEESAKDTQVIYEEAVAIYHVTYNYASMYGVEKCGFAWKVAGSALCSLCAWKSAAL 1003
            EAP MEESAK+T+ IYEE+VAIYHV Y+YA  +GV +C FAWKVAGSALC LCAWK A  
Sbjct: 960  EAPCMEESAKNTEEIYEESVAIYHVVYDYAMRHGVTRCSFAWKVAGSALCDLCAWKLAGP 1019

Query: 1002 NEKPVTILPSVLRSLL 955
             E+P+ ILPSVLR LL
Sbjct: 1020 KEEPIAILPSVLRELL 1035


>gb|AHL27588.1| RNA-dependent RNA polymerase 5 [Salvia miltiorrhiza]
          Length = 898

 Score = 1129 bits (2920), Expect = 0.0
 Identities = 597/894 (66%), Positives = 688/894 (76%), Gaps = 10/894 (1%)
 Frame = -1

Query: 4005 MEAKRQKTEHSPHVDVRLPESVEDIIKRVSMEKQTQPLDFNA--RKLLRDIGEQGSLQIL 3832
            MEAK+QK + S H DVRLPESVE  I+R+++EKQ  PL  N+  RK+LR+IGEQ SL++L
Sbjct: 1    MEAKKQKMDGSSHEDVRLPESVEAAIERIAVEKQQPPLPRNSDVRKMLREIGEQPSLKLL 60

Query: 3831 GTVLSSSSPIKTFSGFVSFLVKQKYPIHK----SPSSASPLGLRSPSSASPNIARNGEGL 3664
              + SS +PIK+F GFVS LV+  YP       SP  + P  + SPSS SPN+ARNGE L
Sbjct: 61   NIIHSSKTPIKSFGGFVSKLVRTYYPNQAAAIPSPYKSPPPTIYSPSSISPNVARNGESL 120

Query: 3663 QSPLSNLQRTGFQNISCQLSFEDETLESRSCLVRDVSSLSGEHGEMTESVTISPQLLILN 3484
            QS LSNLQ TGFQNISCQLSFEDE LESR+                 ES+ ISPQLL LN
Sbjct: 121  QSSLSNLQGTGFQNISCQLSFEDEALESRN-----------------ESMAISPQLLTLN 163

Query: 3483 KLEYRKLFLLLSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEESDR 3304
            KLE+RKLFLLLSY    KLE VLT ++AN+V++ K L MPEFE+ IW ++G ++C   DR
Sbjct: 164  KLEFRKLFLLLSYANGQKLEDVLTTEEANQVYANKALPMPEFERLIWDKFGYRYCNGLDR 223

Query: 3303 SQYLDWDSGKTHFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSVDGKYSA 3124
            SQ+LDWDSGKTH Y CHV+ DGSY FKGPYLNS RTHLQRSLGD+NVL VKF     Y A
Sbjct: 224  SQHLDWDSGKTHIYNCHVNPDGSYSFKGPYLNSSRTHLQRSLGDDNVLTVKFLAKEIYPA 283

Query: 3123 EKIVEQXXXXXXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSISTHGNEE 2944
             KIVE+             FKDE+KK KKN+  ED   ++S VK YFVH DSIS++ +EE
Sbjct: 284  RKIVEEGLIVGLRRYRFFVFKDEQKKAKKNQA-EDNKSSHSAVKCYFVHLDSISSNDHEE 342

Query: 2943 NYILSRKSVSEARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDIIEDIPFQ 2764
            +Y+L RKSVSEARRLFMHIHTLST+EKYMAR SLILSKTT++ LDFAAI V+IIEDIPFQ
Sbjct: 343  DYVLFRKSVSEARRLFMHIHTLSTIEKYMARLSLILSKTTRIDLDFAAIIVEIIEDIPFQ 402

Query: 2763 DENGSIIHDEDGKPILHTDGTGYISEDLAMKYITNSSSEFATFGGTVCQERGAAARINEP 2584
            D+NGSII DEDGKPILHTDGTGYIS+DLAMK    S   +A+   T              
Sbjct: 403  DDNGSIIRDEDGKPILHTDGTGYISQDLAMKC---SKDFYASMHNT---------NSTFE 450

Query: 2583 PLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQSEETL--NSLEIVN 2410
            PLLIQCRLFHDGYAVKGTLL+NRKLEPGRIQIRPSMIKVEKD +++SEE L  NSLEI  
Sbjct: 451  PLLIQCRLFHDGYAVKGTLLVNRKLEPGRIQIRPSMIKVEKDHSMESEEILKFNSLEINT 510

Query: 2409 ISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRSALRVASLHDGLY 2230
            IS RP RN+LSKYLI+LLSYGGVPQEFFLNLL  AL ETQNVYSNRR ALRVAS HD   
Sbjct: 511  ISRRPNRNFLSKYLISLLSYGGVPQEFFLNLLFKALEETQNVYSNRRVALRVASHHDDWD 570

Query: 2229 WGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYLMGTADPTGVLNN 2050
             G  AQRMIC G+PL+EPYLQHCL  +            +PV ES YLMGTADPTGVL+N
Sbjct: 571  LGLMAQRMICCGIPLDEPYLQHCLSKLESSQKKKLKEGRIPVDESCYLMGTADPTGVLHN 630

Query: 2049 DEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAKYGVFFSTKGQKS 1870
            DEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEA+YVK LE+F+GNAKYG+FFSTKGQ+S
Sbjct: 631  DEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAVYVKGLEEFIGNAKYGIFFSTKGQRS 690

Query: 1869 AAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQK--SSNXXXXXX 1696
            AAYE+ATGDFDGD YW+SRNPELL  FKA+EPW+RVY  PDAEKR+P+K  SS       
Sbjct: 691  AAYEIATGDFDGDTYWVSRNPELLTFFKASEPWKRVYPAPDAEKRDPRKFSSSELERELF 750

Query: 1695 XXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKDSLKRKMIKLIDIYYDALDAPK 1516
                ++R PSY+MG AADSWL YMDRLL+LGDDRA EK+SLK KMIKL+DIYYDALDAPK
Sbjct: 751  QLFLDSRTPSYNMGTAADSWLTYMDRLLTLGDDRAAEKNSLKTKMIKLVDIYYDALDAPK 810

Query: 1515 SGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFHDEAPPRRQE 1354
            SGKK++VP+DL+AE+FPHHM KA + SY SSSILG+IYD+VLEF+ +A  R+ E
Sbjct: 811  SGKKINVPDDLKAELFPHHMEKAIEKSYHSSSILGQIYDNVLEFNSDAVSRKGE 864


>ref|XP_011093632.1| PREDICTED: probable RNA-dependent RNA polymerase 5 [Sesamum indicum]
          Length = 1013

 Score = 1110 bits (2871), Expect = 0.0
 Identities = 593/1029 (57%), Positives = 734/1029 (71%), Gaps = 21/1029 (2%)
 Frame = -1

Query: 3975 SPHVDVRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPIKT 3796
            SPH +  LP S+E  I+++  ++   P+   ARKLL DIGE+ +  +L  + S+    K+
Sbjct: 4    SPHQEAPLPHSIEKTIQKICKDQSQPPISSYARKLLADIGEKAASDLLARI-SNQRITKS 62

Query: 3795 FSGFVSFLVKQKYPIHKSPSSASPLGLRSPSSASPNIARNGEGLQSPLSNLQRTGFQNIS 3616
            FSG++  LVK+ +P    PSS S   L SPSS+SP   RN    +SPL          I 
Sbjct: 63   FSGYIITLVKKYHPA-VVPSSPSKRSL-SPSSSSP---RNTSLKKSPLQ---------IG 108

Query: 3615 CQLSFEDETLESRSCLVRDVSSLS-----GEHGEMTESVTISPQLLILNKLEYRKLFLLL 3451
              LSFED+  E+R  +    +S +      E   MT+S TIS QL IL+KLEYRKLFL+L
Sbjct: 109  RLLSFEDDVQETRGPIFEHQTSTAVELKNSELRGMTKSNTISQQLRILSKLEYRKLFLVL 168

Query: 3450 SYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEESDRSQYLDWDSGKT 3271
            SY  R+KLE V+T+D AN++F  K L M  FE  IW  YG K+C +SDRS+YLDWD GKT
Sbjct: 169  SYTGRHKLENVMTVDGANDIFQKKDLPMSIFETAIWNTYGNKYCNKSDRSEYLDWDFGKT 228

Query: 3270 HFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSVDGKYSAEKIVEQXXXXX 3091
            H YYC+V  DGSY+FKGP L+S RTHLQRSLGD+N+LIVKF  D  Y    IVE+     
Sbjct: 229  HLYYCYVHEDGSYHFKGPCLSSTRTHLQRSLGDDNILIVKFLEDDMYGVN-IVEEGILVG 287

Query: 3090 XXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSISTHGNEENYILSRKSVSE 2911
                    FKDERK  KKN+   +K  + + VK  FV  DS+     + NYILS KSV E
Sbjct: 288  LRRFRFLVFKDERKGRKKNQIENEKAYSCA-VKCLFVRIDSVDPV-EDNNYILSGKSVGE 345

Query: 2910 ARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDIIEDIPFQDENGSIIHDED 2731
             RRLFMH+HT+ T+EKYMARFSLILSKT KL +DF AITV+ I+DIPF+D++GS+I DED
Sbjct: 346  VRRLFMHVHTVLTMEKYMARFSLILSKTIKLQVDFGAITVETIQDIPFRDDSGSLICDED 405

Query: 2730 GKPILHTDGTGYISEDLAMK---------YITNSS----SEFATFGGTVCQERGAAARIN 2590
            GKP+LHTDGTGYISEDLAMK         YIT++S     EF       CQ R A +R  
Sbjct: 406  GKPLLHTDGTGYISEDLAMKCPKEFSAAKYITDNSFETYHEFVDIDDASCQTRLAKSRNK 465

Query: 2589 EPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQSEETLNSLEIVN 2410
            E PLL+QCRLF++G AVKGTLL+N+KL+ G IQIRPSMIKVE+D     +   NSLEIV 
Sbjct: 466  EAPLLMQCRLFYNGCAVKGTLLVNKKLKLGEIQIRPSMIKVERDCTAPVQGNFNSLEIVA 525

Query: 2409 ISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRSALRVASLHDGLY 2230
            ISH+P R +LSK LI+LL+YGGVPQ+ FL LL+NAL +TQ VYSNR +ALRVAS HDGL 
Sbjct: 526  ISHKPGRTFLSKTLISLLNYGGVPQQVFLELLTNALEDTQKVYSNRHAALRVASNHDGLD 585

Query: 2229 WGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYLMGTADPTGVLNN 2050
            +G+ AQ MI  G+PLNEPYL HCL N+            +PV ESFYLMGTADPTGVL  
Sbjct: 586  FGYLAQLMISCGIPLNEPYLNHCLCNLKKDERAKLRKGKVPVGESFYLMGTADPTGVLEY 645

Query: 2049 DEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAKYGVFFSTKGQKS 1870
            D+VCV+LD+GQISGKVLVYRNPG+HFGDIHVMEAIYV++LED++G++KYG+FFSTKG +S
Sbjct: 646  DQVCVVLDNGQISGKVLVYRNPGLHFGDIHVMEAIYVQQLEDYIGDSKYGIFFSTKGGRS 705

Query: 1869 AAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQK--SSNXXXXXX 1696
            A YEMATGDFDGD+YW+SR+ ELLK+FKA+EPW RVYS  ++  +NP++  S        
Sbjct: 706  APYEMATGDFDGDMYWVSRHHELLKNFKASEPWARVYSTKESNSKNPKELSSEELERELF 765

Query: 1695 XXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKDSLKRKMIKLIDIYYDALDAPK 1516
                +AR+PS+ M  AADSWLA+MDRLL+LGDDR  EKD L+ KMI LIDIYYDALDAPK
Sbjct: 766  RLFLQARKPSFEMSTAADSWLAFMDRLLTLGDDRTFEKDCLREKMIHLIDIYYDALDAPK 825

Query: 1515 SGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFHDEAPPRRQEIWKLPC 1336
            SGK+V++P +LR EM+PHHM + P+ SY S SILG+IYD + EF DE  P++ EIWKLPC
Sbjct: 826  SGKRVNLPKELRPEMYPHHMERGPEYSYHSMSILGRIYDMIEEFKDEVVPKK-EIWKLPC 884

Query: 1335 FDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKKYKQMLYEAPDMEESA 1156
            FD+ I E ++ +W+ NY+ YRREM + LN           DVIKK K+ LY+APDMEES+
Sbjct: 885  FDIPIPETYIQKWRINYENYRREMAKALNSNYESKKDAANDVIKKNKEFLYDAPDMEESS 944

Query: 1155 KDTQVIYEEAVAIYHVTYNYA-SMYGVEKCGFAWKVAGSALCSLCAWKSAALNEKPVTIL 979
            KDT VIY+EA+AIYHVTY+YA SM  + KC FAWKV GSALC+L AWK+A   EKP+TIL
Sbjct: 945  KDTTVIYKEALAIYHVTYDYAKSMDDIGKCSFAWKVGGSALCNLYAWKTAGPKEKPLTIL 1004

Query: 978  PSVLRSLLN 952
            PSV+R +LN
Sbjct: 1005 PSVIREVLN 1013


>gb|EYU30717.1| hypothetical protein MIMGU_mgv1a001145mg [Erythranthe guttata]
          Length = 878

 Score = 1064 bits (2752), Expect = 0.0
 Identities = 537/855 (62%), Positives = 647/855 (75%), Gaps = 1/855 (0%)
 Frame = -1

Query: 3516 VTISPQLLILNKLEYRKLFLLLSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWAR 3337
            +TI+ QL+ LNKLEYRKLFL+LSYI R KLE V+T++DA+E++ M    M  FE  IW +
Sbjct: 62   ITITQQLITLNKLEYRKLFLVLSYIGREKLEDVVTVEDADEIYRMNEFPMQAFENKIWKK 121

Query: 3336 YGRKFCEESDRSQYLDWDSGKTHFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLI 3157
            YG++F +ESDRSQYLDWDSGKTH YYCHV  DG YYFKGPYLNS++THLQRSLGD+N+LI
Sbjct: 122  YGQRFYDESDRSQYLDWDSGKTHVYYCHVYQDGRYYFKGPYLNSMKTHLQRSLGDDNILI 181

Query: 3156 VKFSVDGKYSAEKIVEQXXXXXXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVH 2977
            VKF  DG +    I ++             FKD+RKKV KN+  ++K  TYS+V+ +FV 
Sbjct: 182  VKFLEDGAFGTGNIAQEGILVGLRRYRFFVFKDDRKKVNKNQSDKEKKATYSNVRCFFVR 241

Query: 2976 FDSISTHGNEENYILSRKSVSEARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAI 2797
             DS+S  G +ENYILSRK++ EARR+FMHIHT+S++EK MAR SLILSK+ KL ++ AA+
Sbjct: 242  VDSVSPSGYDENYILSRKTIGEARRMFMHIHTISSIEKCMARLSLILSKSIKLEINLAAV 301

Query: 2796 TVDIIEDIPFQDENGSIIHDEDGKPILHTDGTGYISEDLAMK-YITNSSSEFATFGGTVC 2620
             ++ I+DIPFQDE G +IHDEDGKPILHTDGTGYISEDLA++  I  S+ ++ T      
Sbjct: 302  IIEKIKDIPFQDEGGFVIHDEDGKPILHTDGTGYISEDLAIRCQICFSAPKYGTDD---- 357

Query: 2619 QERGAAARINEPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQSE 2440
                        PLL+QCR+FH+GYAVKGTLL+NRKLEPG IQIRPSMIKVE+D  ++ E
Sbjct: 358  ---------RFEPLLVQCRIFHEGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDHNIKVE 408

Query: 2439 ETLNSLEIVNISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRSAL 2260
            E  NSLEIVNISH+P RN LSKYLIALLSYGGVPQEFFLNL++N L + +NVY+NRR+AL
Sbjct: 409  EAFNSLEIVNISHKPGRNCLSKYLIALLSYGGVPQEFFLNLVANTLEDARNVYTNRRAAL 468

Query: 2259 RVASLHDGLYWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYLMG 2080
            RVAS H GL +GF AQRMICSGVPL+EPYLQ CL N+            +P++ESFYLMG
Sbjct: 469  RVASNHAGLDYGFLAQRMICSGVPLDEPYLQLCLSNLENGEKTKLKTGKIPLNESFYLMG 528

Query: 2079 TADPTGVLNNDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAKYG 1900
            TADPTGVLNNDEVCVIL +GQISGKVLVYRNPGMHFGD+HVMEA+YVKELE+FVGNAKYG
Sbjct: 529  TADPTGVLNNDEVCVILGNGQISGKVLVYRNPGMHFGDVHVMEAVYVKELEEFVGNAKYG 588

Query: 1899 VFFSTKGQKSAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQKS 1720
            VFFSTKG  SAAYEMATGDFDGD+YW+SRNPEL      NE ++                
Sbjct: 589  VFFSTKGATSAAYEMATGDFDGDMYWVSRNPEL-----ENELFQ---------------- 627

Query: 1719 SNXXXXXXXXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKDSLKRKMIKLIDIY 1540
                        EAR PS++M  AADSWL +MDRLL+LGDDR  EK SL +KMI+L+DIY
Sbjct: 628  ---------LCLEARTPSFNMATAADSWLTFMDRLLTLGDDRTAEKKSLMKKMIRLVDIY 678

Query: 1539 YDALDAPKSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFHDEAPPRR 1360
            YDALDAPKSGKKV VP +LRAEM+PHHM K  ++SY SSS+LG+IYD V    ++  PR+
Sbjct: 679  YDALDAPKSGKKVKVPEELRAEMYPHHMEKGSELSYHSSSVLGQIYDRVDALKNDFVPRK 738

Query: 1359 QEIWKLPCFDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKKYKQMLYE 1180
             EIWKLPCFDV I E +V  WK+ Y+ YRREM + L            +VIKKYKQ+LYE
Sbjct: 739  -EIWKLPCFDVPIPEIYVKMWKSRYESYRREMTKALKSGNESRNDAADEVIKKYKQLLYE 797

Query: 1179 APDMEESAKDTQVIYEEAVAIYHVTYNYASMYGVEKCGFAWKVAGSALCSLCAWKSAALN 1000
            A DMEESAK ++VIY+EA+AIYHVTY+YA  +GVEKC FAW++A SALC+LCAWK A   
Sbjct: 798  AGDMEESAKSSEVIYDEAIAIYHVTYDYAMEHGVEKCNFAWRIAASALCNLCAWKLAGPR 857

Query: 999  EKPVTILPSVLRSLL 955
            EKP+ ILPS+LR LL
Sbjct: 858  EKPLPILPSLLRELL 872


>emb|CDP03267.1| unnamed protein product [Coffea canephora]
          Length = 1019

 Score =  910 bits (2351), Expect = 0.0
 Identities = 505/1025 (49%), Positives = 669/1025 (65%), Gaps = 22/1025 (2%)
 Frame = -1

Query: 3960 VRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPIKT-FSGF 3784
            V L E VE +I+++ +EKQ  P D  AR+ L DIGE+ + +I+  +  S   I+T  S +
Sbjct: 13   VSLSEPVERMIEQICIEKQQPPPDHYARQRLFDIGEEKAYEIVRRIYYSEEAIRTTLSRY 72

Query: 3783 VS-FLVKQKYPIHKSPSSASPLGLRSPSSASPNIARNGEGLQSPLSNLQRTGFQNISCQL 3607
            ++ F    + P  +S S+ SP        AS +  +       P      T F       
Sbjct: 73   ITWFTDSPQSPFRQSSSTPSPRTPPPQLHASSSPPKRALHFPPP----PPTCFSQC---- 124

Query: 3606 SFEDETLESRSCLVRDVSSLSGEHGEMTESVTISPQLLILNKLEYRKLFLLLSYIKR--- 3436
               DE+  S    +   S L           T + QL +L++LE+RK FLL SYI R   
Sbjct: 125  ---DESPCSPMSKLNMSSPLPHPESARPSQTTHNYQLTVLSQLEFRKFFLLYSYIGRLVL 181

Query: 3435 NKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEESDRSQYLDWDSGKTHFYYC 3256
            +KLE V+T ++AN++  MK+L M  +E  IW   G++ C  SDR + +DWDSGKTHFYYC
Sbjct: 182  SKLEEVITTENANKILEMKNLPMGVYESCIWDMCGKQLCAPSDRIEVIDWDSGKTHFYYC 241

Query: 3255 HVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSVDGKYSAEKIVEQXXXXXXXXXX 3076
            HV  DGSY FKGPYL ++RTHLQR+LGD+NVLIV+F  DGK ++++I+E           
Sbjct: 242  HVYEDGSYCFKGPYLKTIRTHLQRALGDDNVLIVRFVDDGKCNSDRIIEDGIIVGLRRYR 301

Query: 3075 XXXFKDERKKVKKNRDWEDKNCTYSDV--KSYFVHFDSISTHGNEENYILSRKSVSEARR 2902
               FKDE K  KK +   +KN T      K YFV FDSI+T G +E Y+LS   V+EARR
Sbjct: 302  FFAFKDECKDAKKKKKGLEKNKTPLSAFPKCYFVRFDSIATSGTDEPYLLSSLEVNEARR 361

Query: 2901 LFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVD-IIEDIPFQDENGSIIHDEDGK 2725
            LFM ++++S++ KY+ARFSLILSKT KL +D +++ +D  I+DI  +D N   I D++G+
Sbjct: 362  LFMDVNSISSMAKYIARFSLILSKTIKLPVDLSSVVIDDTIQDIECRDGNNRPIKDDNGE 421

Query: 2724 PILHTDGTGYISEDLAMK---------YITNSS-SEFATFGGTV---CQERGAAARINEP 2584
            P++HTDGTG+ISEDLA+K         YI +    +F  F G V      RG  AR  +P
Sbjct: 422  PLIHTDGTGFISEDLALKCPQDFGRAQYIKDKDFQKFHNFVGFVDAPFDVRGTEARNRDP 481

Query: 2583 PLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQSEETLNSLEIVNIS 2404
            PLL+QCRLF  G AVKGTLL+N+KL+ G IQIRPSMIKV+KD+     +T +SLEIV +S
Sbjct: 482  PLLMQCRLFSQGLAVKGTLLVNKKLKAGTIQIRPSMIKVQKDREGPIGQTFDSLEIVAVS 541

Query: 2403 HRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRSALRVASLHDGLYWG 2224
            HRP R +LSKYLIALLSYGGVP+ FF++L+++ L ET  V++++R+A +VA   +G Y  
Sbjct: 542  HRPRRCHLSKYLIALLSYGGVPRTFFVDLMTSVLEETNAVFTDKRAAFKVALHQEGFYDA 601

Query: 2223 FEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYLMGTADPTGVLNNDE 2044
              A R++ +G+PLNEP+LQ  L  +            +P+SESFYLMGTADPTG+L  +E
Sbjct: 602  GGALRLLLAGIPLNEPHLQKRLSELANNERTLLKEGKIPISESFYLMGTADPTGLLKENE 661

Query: 2043 VCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAKYGVFFSTKGQKSAA 1864
            VCV+LD+GQ+SGKVL+YRNPG+HFGD+HV+EA+YV  LED +GNAKYG+FFSTKG++S A
Sbjct: 662  VCVVLDNGQVSGKVLLYRNPGLHFGDVHVLEAVYVPALEDIIGNAKYGIFFSTKGRRSVA 721

Query: 1863 YEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQKSSNXXXXXXXXXX 1684
             E+A GDFDGD+YW+SRNP+LLK+F A+ PW RVY    AE++NP + S           
Sbjct: 722  SEIANGDFDGDMYWVSRNPQLLKYFSASPPWTRVYPSLRAERKNPNEYSAEQLEHELFRH 781

Query: 1683 EARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKDSLKRKMIKLIDIYYDALDAPKSGKK 1504
              ++PSY+M +AADSWLA+MDRLL LGDD A EKD+LK  M+KLIDIYYDALDAPK G K
Sbjct: 782  FLKKPSYNMAVAADSWLAFMDRLLILGDDNAKEKDALKENMLKLIDIYYDALDAPKRGTK 841

Query: 1503 VDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFHDEAPPRRQEIWKLPCFDVS 1324
            V VP +L+AE FPH+MGK  D SYRS+S+LG IYD    F  E   R   I KLPCFDV 
Sbjct: 842  VIVPEELKAERFPHYMGK--DGSYRSTSVLGDIYDRAEAFQSE--QRCIAIEKLPCFDVE 897

Query: 1323 ISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKKYKQMLYEAPDMEESAKDTQ 1144
            + + +++ W+  Y+ YR+EM   L            DVIKKYK++LYEA + EES KD Q
Sbjct: 898  VPQNYLSSWRGRYNEYRKEMNVALQKDDESRNDAADDVIKKYKRLLYEAAEFEESKKDVQ 957

Query: 1143 VIYEEAVAIYHVTYNYA-SMYGVEKCGFAWKVAGSALCSLCAWKSAALNEKPVTILPSVL 967
             I++EA+A+Y VTY+YA S     KCGFAWK AGSAL S  A      NE+ V + PS L
Sbjct: 958  EIHKEALALYQVTYDYAISTKDAGKCGFAWKAAGSALLSYFA---TGRNERLVPVSPSAL 1014

Query: 966  RSLLN 952
            R L +
Sbjct: 1015 RELFS 1019


>ref|XP_009780069.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X1
            [Nicotiana sylvestris]
          Length = 1023

 Score =  871 bits (2250), Expect = 0.0
 Identities = 489/1028 (47%), Positives = 654/1028 (63%), Gaps = 24/1028 (2%)
 Frame = -1

Query: 3966 VDVRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPIKTFSG 3787
            ++  LP S+E +++++  E+  +P D   R+ L  IGEQGSL IL  ++S+ +  KT S 
Sbjct: 19   LEAPLPSSIEAMLRKICSEQCQEPPDAGIRRRLGSIGEQGSLAIL-RIISTRAIRKTLSA 77

Query: 3786 FVSFLVKQKYPIHKSPSSASPLGLRSPSSA-SPNIAR-NGEGLQSPLSNL------QRTG 3631
            F+ +L+ +      S   ASP    SPS   +P   R  GE    P   +      Q   
Sbjct: 78   FLVYLMDRYPDCLSSSPFASPQKRTSPSLLPTPESKRVQGESSSKPKPKIGSSPCVQFAS 137

Query: 3630 FQNISCQLSFEDETLESRSCLVRDVSSLSGEHGEMTESVTISPQLLILNKLEYRKLFLLL 3451
             Q +  QLSF DE     +C               T S+ IS QL+IL +LE+RKLFL+L
Sbjct: 138  PQRVIRQLSFGDEPSPESNC--------------RTPSLNISQQLMILGELEFRKLFLVL 183

Query: 3450 SYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEESDRSQYLDWDSGKT 3271
            SYI   KLE V++   A+++   K L M +FE  IW  +G+    ESDRS+YLDWD GKT
Sbjct: 184  SYIGSKKLEDVISPKIADDIVRKKTLPMTDFESEIWNAFGKACYTESDRSKYLDWDCGKT 243

Query: 3270 HFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSVDGKYSAEKIVEQXXXXX 3091
            H YYCH+  +G   FKGPYLN+ RTHLQR+LGDENVLIVKF V+    A  IVE+     
Sbjct: 244  HLYYCHIKQNGYCTFKGPYLNTTRTHLQRALGDENVLIVKF-VEDACCANIIVEEGILVG 302

Query: 3090 XXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSISTHGNEENYILSRKSVSE 2911
                    +KD++++ K     + K  +   +K YFV F+SI T+ +  +Y+ + +  SE
Sbjct: 303  FRRYRFFVYKDDKERKKTPAIMKTKTAS---LKCYFVRFESIETYNHGGSYVFAGRRTSE 359

Query: 2910 ARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDIIEDIPFQDENGSIIHDED 2731
            AR  FMH+H +S + KY AR SLILSKT KL ++ A++T++ +EDI  +DE+G II DED
Sbjct: 360  ARCHFMHVHMVSNMAKYAARLSLILSKTIKLQVNLASVTIERVEDILCRDESGCIICDED 419

Query: 2730 GKPILHTDGTGYISEDLAMK---------YITNSSSE----FATFGGTVCQERGAAARIN 2590
            G+P +HTDGTG+ISEDLAM+         YI + + E           + + RG  +   
Sbjct: 420  GEPCIHTDGTGFISEDLAMRCPKDFSKAEYIKDENYENFVDIVDLEDMIAERRGNGSLNK 479

Query: 2589 EPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQSEETLNSLEIVN 2410
            EPPLL+QCRL+ +G AVKGT L+NRK+   +IQIRPSM+KVE D  + S  T NSLE+V 
Sbjct: 480  EPPLLMQCRLYKNGCAVKGTFLINRKIGSRKIQIRPSMVKVETDPTISSLPTFNSLEVVA 539

Query: 2409 ISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRSALRVASLHDGLY 2230
            IS+RP + YLSK+LI+LLSYGGV +EFF+ +L +AL ET+ VY  +R+AL+VA  +  + 
Sbjct: 540  ISNRPRKTYLSKHLISLLSYGGVGREFFMEILGSALEETKQVYLKKRAALKVAINYREMD 599

Query: 2229 WGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYLMGTADPTGVLNN 2050
                A RMI SGVPLNEP+L   L  +            LP+S+SFYLMGTADPTGVL N
Sbjct: 600  DDCLAARMISSGVPLNEPHLHARLSRLAKIERSKLRGGKLPLSDSFYLMGTADPTGVLEN 659

Query: 2049 DEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAKYGVFFSTKGQKS 1870
            +EVCVILDSGQ+SG+VLVYRNPG+HFGD+HVM+A YV+EL D VG+AKYG+ FSTKG +S
Sbjct: 660  NEVCVILDSGQVSGRVLVYRNPGLHFGDVHVMKARYVEELVDIVGDAKYGIVFSTKGPRS 719

Query: 1869 AAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQKSS--NXXXXXX 1696
            AA E+A GDFDGD+YW+S N +L+  ++A++PW R +S P A  + P + S         
Sbjct: 720  AASEIANGDFDGDMYWVSINRKLVDSYRASKPWTRTHSTPKAVSKKPTEFSADELEYELF 779

Query: 1695 XXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKDSLKRKMIKLIDIYYDALDAPK 1516
                 A+    SM +AADSWLA+MDRLL L DD A    SLK KM+ LIDIYYDALDAPK
Sbjct: 780  RQFLRAKSKGASMSVAADSWLAFMDRLLMLRDDDADGMHSLKGKMLHLIDIYYDALDAPK 839

Query: 1515 SGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFHDEAPPRRQEIWKLPC 1336
            SGKKV +P+DL+A  FPH+M +    SY S+SILG+IYD V  + DE      EI KLPC
Sbjct: 840  SGKKVSIPHDLKANRFPHYMERGNPFSYHSTSILGQIYDYVDSYPDE-DLCITEISKLPC 898

Query: 1335 FDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKKYKQMLYEAPDMEESA 1156
            FDV I ++  T W+  Y+ Y+++M   +N           +VIKKYK++LY AP+ E+S 
Sbjct: 899  FDVEIPDECTTLWRERYEEYKKDMTMAMNSGCEVKNSACNEVIKKYKKLLYGAPEFEQSV 958

Query: 1155 KDTQVIYEEAVAIYHVTYNYASM-YGVEKCGFAWKVAGSALCSLCAWKSAALNEKPVTIL 979
            + T+ I+ EA+A+YHVTY+ A + Y +EKCGFAWKVAGSALC + A       E    IL
Sbjct: 959  RKTEDIFNEALALYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMYQ---KENAFPIL 1015

Query: 978  PSVLRSLL 955
            PS+L+ +L
Sbjct: 1016 PSILQDIL 1023


>ref|XP_009780070.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X2
            [Nicotiana sylvestris]
          Length = 1021

 Score =  864 bits (2232), Expect = 0.0
 Identities = 488/1028 (47%), Positives = 652/1028 (63%), Gaps = 24/1028 (2%)
 Frame = -1

Query: 3966 VDVRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPIKTFSG 3787
            ++  LP S+E +++++  E+  +P D   R+ L  IGEQGSL IL  ++S+ +  KT S 
Sbjct: 19   LEAPLPSSIEAMLRKICSEQCQEPPDAGIRRRLGSIGEQGSLAIL-RIISTRAIRKTLSA 77

Query: 3786 FVSFLVKQKYPIHKSPSSASPLGLRSPSSA-SPNIAR-NGEGLQSPLSNL------QRTG 3631
            F+ +L+ +      S   ASP    SPS   +P   R  GE    P   +      Q   
Sbjct: 78   FLVYLMDRYPDCLSSSPFASPQKRTSPSLLPTPESKRVQGESSSKPKPKIGSSPCVQFAS 137

Query: 3630 FQNISCQLSFEDETLESRSCLVRDVSSLSGEHGEMTESVTISPQLLILNKLEYRKLFLLL 3451
             Q +  QLSF DE     +C               T S+ IS QL+IL +LE+RKLFL+L
Sbjct: 138  PQRVIRQLSFGDEPSPESNC--------------RTPSLNISQQLMILGELEFRKLFLVL 183

Query: 3450 SYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEESDRSQYLDWDSGKT 3271
            SYI   KLE V++   A+++   K L M +FE  IW  +G+    ESDRS+YLDWD GKT
Sbjct: 184  SYIGSKKLEDVISPKIADDIVRKKTLPMTDFESEIWNAFGKACYTESDRSKYLDWDCGKT 243

Query: 3270 HFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSVDGKYSAEKIVEQXXXXX 3091
            H YYCH+  +G   FKGPYLN+ RTHLQR+LGDENVLIVKF V+    A  IVE+     
Sbjct: 244  HLYYCHIKQNGYCTFKGPYLNTTRTHLQRALGDENVLIVKF-VEDACCANIIVEEGILVG 302

Query: 3090 XXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSISTHGNEENYILSRKSVSE 2911
                    +KD++++ K     + K  +   +K YFV F+SI T+ +  +Y+ + +  SE
Sbjct: 303  FRRYRFFVYKDDKERKKTPAIMKTKTAS---LKCYFVRFESIETYNHGGSYVFAGRRTSE 359

Query: 2910 ARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDIIEDIPFQDENGSIIHDED 2731
            AR  FMH+H +S + KY AR SLILSKT KL ++ A++T++ +EDI  +DE+G II DED
Sbjct: 360  ARCHFMHVHMVSNMAKYAARLSLILSKTIKLQVNLASVTIERVEDILCRDESGCIICDED 419

Query: 2730 GKPILHTDGTGYISEDLAMK---------YITNSSSE----FATFGGTVCQERGAAARIN 2590
            G+P +HTDGTG+ISEDLAM+         YI + + E           + + RG  +   
Sbjct: 420  GEPCIHTDGTGFISEDLAMRCPKDFSKAEYIKDENYENFVDIVDLEDMIAERRGNGSLNK 479

Query: 2589 EPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQSEETLNSLEIVN 2410
            EPPLL+QCRL+ +G AVKGT L+NRK+   +IQIRPSM+KVE D  + S  T NSLE+V 
Sbjct: 480  EPPLLMQCRLYKNGCAVKGTFLINRKIGSRKIQIRPSMVKVETDPTISSLPTFNSLEVVA 539

Query: 2409 ISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRSALRVASLHDGLY 2230
            I  RP + YLSK+LI+LLSYGGV +EFF+ +L +AL ET+ VY  +R+AL+VA  +  + 
Sbjct: 540  I--RPRKTYLSKHLISLLSYGGVGREFFMEILGSALEETKQVYLKKRAALKVAINYREMD 597

Query: 2229 WGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYLMGTADPTGVLNN 2050
                A RMI SGVPLNEP+L   L  +            LP+S+SFYLMGTADPTGVL N
Sbjct: 598  DDCLAARMISSGVPLNEPHLHARLSRLAKIERSKLRGGKLPLSDSFYLMGTADPTGVLEN 657

Query: 2049 DEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAKYGVFFSTKGQKS 1870
            +EVCVILDSGQ+SG+VLVYRNPG+HFGD+HVM+A YV+EL D VG+AKYG+ FSTKG +S
Sbjct: 658  NEVCVILDSGQVSGRVLVYRNPGLHFGDVHVMKARYVEELVDIVGDAKYGIVFSTKGPRS 717

Query: 1869 AAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQKSS--NXXXXXX 1696
            AA E+A GDFDGD+YW+S N +L+  ++A++PW R +S P A  + P + S         
Sbjct: 718  AASEIANGDFDGDMYWVSINRKLVDSYRASKPWTRTHSTPKAVSKKPTEFSADELEYELF 777

Query: 1695 XXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKDSLKRKMIKLIDIYYDALDAPK 1516
                 A+    SM +AADSWLA+MDRLL L DD A    SLK KM+ LIDIYYDALDAPK
Sbjct: 778  RQFLRAKSKGASMSVAADSWLAFMDRLLMLRDDDADGMHSLKGKMLHLIDIYYDALDAPK 837

Query: 1515 SGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFHDEAPPRRQEIWKLPC 1336
            SGKKV +P+DL+A  FPH+M +    SY S+SILG+IYD V  + DE      EI KLPC
Sbjct: 838  SGKKVSIPHDLKANRFPHYMERGNPFSYHSTSILGQIYDYVDSYPDE-DLCITEISKLPC 896

Query: 1335 FDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKKYKQMLYEAPDMEESA 1156
            FDV I ++  T W+  Y+ Y+++M   +N           +VIKKYK++LY AP+ E+S 
Sbjct: 897  FDVEIPDECTTLWRERYEEYKKDMTMAMNSGCEVKNSACNEVIKKYKKLLYGAPEFEQSV 956

Query: 1155 KDTQVIYEEAVAIYHVTYNYASM-YGVEKCGFAWKVAGSALCSLCAWKSAALNEKPVTIL 979
            + T+ I+ EA+A+YHVTY+ A + Y +EKCGFAWKVAGSALC + A       E    IL
Sbjct: 957  RKTEDIFNEALALYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMYQ---KENAFPIL 1013

Query: 978  PSVLRSLL 955
            PS+L+ +L
Sbjct: 1014 PSILQDIL 1021


>ref|XP_009592436.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X1
            [Nicotiana tomentosiformis]
          Length = 1020

 Score =  861 bits (2224), Expect = 0.0
 Identities = 488/1029 (47%), Positives = 649/1029 (63%), Gaps = 25/1029 (2%)
 Frame = -1

Query: 3966 VDVRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPI-KTFS 3790
            ++  LP SVE +++++  E+  +P D   R+ L  IGEQGSL IL  +  SS PI KT S
Sbjct: 16   LEAPLPSSVEAMLRKICSEQCQEPPDVGIRRRLGSIGEQGSLTILRII--SSRPIRKTLS 73

Query: 3789 GFVSFLVKQKYPIHKSPSSASPLGLRSPSSA-SPNIAR-NGEGLQSPLSNL------QRT 3634
             F+ +L+ +      S   ASP    SPS   +P   R  GE    P   +      Q  
Sbjct: 74   AFLVYLMDRYPDCLSSSPFASPQKRTSPSLLPTPESKRVQGESSTKPKPKIGSSPCVQFA 133

Query: 3633 GFQNISCQLSFEDETLESRSCLVRDVSSLSGEHGEMTESVTISPQLLILNKLEYRKLFLL 3454
                +  QLSF DE     +C               T    IS QL+IL++LE+RKLFL+
Sbjct: 134  SPHRVVRQLSFRDEPSPESNC--------------RTPPPNISQQLMILSELEFRKLFLV 179

Query: 3453 LSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEESDRSQYLDWDSGK 3274
            LSYI    LE V++   A+++   K L M +FE  IW  +G+    ESDRS+YLDWD GK
Sbjct: 180  LSYIGSKTLEDVISPKIADDIVRKKTLPMTDFESEIWNAFGKACYAESDRSKYLDWDCGK 239

Query: 3273 THFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSVDGKYSAEKIVEQXXXX 3094
            TH YYCH+  +G   FKGPYLN+ RTHLQR+LGDENVLIVKF V+    A  IVE+    
Sbjct: 240  THLYYCHIKQNGYCTFKGPYLNTTRTHLQRALGDENVLIVKF-VEDACCANIIVEEGILV 298

Query: 3093 XXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSISTHGNEENYILSRKSVS 2914
                     +KD++++ K     + K  +   +K YFV F+SI T+ +  +Y+ + K  S
Sbjct: 299  GFRRYRFFVYKDDKERKKTPAIMKTKTAS---LKCYFVRFESIETYNHGGSYVFAAKRTS 355

Query: 2913 EARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDIIEDIPFQDENGSIIHDE 2734
            EAR  FMH+H +S + KY AR SLILSKT KL ++ A++T++ +EDI  +DE+G II DE
Sbjct: 356  EARCHFMHVHMVSNMAKYAARLSLILSKTIKLQVNLASVTIERVEDILCRDESGCIICDE 415

Query: 2733 DGKPILHTDGTGYISEDLAMK---------YITNSSSE----FATFGGTVCQERGAAARI 2593
            DG+P +HTDGTG+ISEDLAM+         YI + + E           + + RG  +  
Sbjct: 416  DGEPRIHTDGTGFISEDLAMRCPKDFSKAEYIKDENYENFVDIVDLEDMIAERRGNGSLN 475

Query: 2592 NEPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQSEETLNSLEIV 2413
             EPPLL+QCRLF +G AVKGT L+NRK+   +IQIRPSM+KVE D  + +  T NSLE+V
Sbjct: 476  KEPPLLMQCRLFKNGCAVKGTFLVNRKIGSRKIQIRPSMVKVETDPTISALPTFNSLEVV 535

Query: 2412 NISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRSALRVASLHDGL 2233
             ISHRP + YLSK+LI+LLSYGGV  EFF+ +L +AL ET+ VY  +R+AL+VA  +  +
Sbjct: 536  AISHRPRKTYLSKHLISLLSYGGVGNEFFMEILGSALEETKQVYLKKRAALKVAINYREM 595

Query: 2232 YWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYLMGTADPTGVLN 2053
                 A R+I SGVPLNEP+L   L  +            LP+S+SFYLMGTADPTGVL 
Sbjct: 596  DDDCLAARLISSGVPLNEPHLHARLSRLAKIERSKLRGGKLPLSDSFYLMGTADPTGVLE 655

Query: 2052 NDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAKYGVFFSTKGQK 1873
            N+EVCVILDSGQ+SG+VLVYRNPG+HFGD+HVM+A YV+EL D VG+AKYG+FFSTKG +
Sbjct: 656  NNEVCVILDSGQVSGRVLVYRNPGLHFGDVHVMKARYVEELVDIVGDAKYGIFFSTKGPR 715

Query: 1872 SAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQKSS--NXXXXX 1699
            SAA E+A GDFDGD+YW+S N +L+  ++A++PW R++S P A  + P + S        
Sbjct: 716  SAASEIANGDFDGDMYWVSINRKLVDSYRASKPWTRMHSTPKAVSKKPTEFSADELEYEL 775

Query: 1698 XXXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKDSLKRKMIKLIDIYYDALDAP 1519
                  A+    SM +AADSWLA+MD LL L DD      SLK K++ LIDIYYDALDAP
Sbjct: 776  FRQFLGAKSKGASMSVAADSWLAFMDLLLMLRDDDVDGMHSLKGKILHLIDIYYDALDAP 835

Query: 1518 KSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFHDEAPPRRQEIWKLP 1339
            KSGKKV +P+DL+A  FPH+M +    SY S+SILG+IYD V  + DE      EI KLP
Sbjct: 836  KSGKKVSIPHDLKANRFPHYMERGNPFSYHSTSILGQIYDYVDSYPDE-DLCITEISKLP 894

Query: 1338 CFDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKKYKQMLYEAPDMEES 1159
            CFDV I ++ +  W   Y+ Y+++M   +N           +VIKKYK++LY AP+ E+S
Sbjct: 895  CFDVEIPDECMALWGERYEEYKKDMTMAMNSGCEVKNSACNEVIKKYKKLLYGAPEFEQS 954

Query: 1158 AKDTQVIYEEAVAIYHVTYNYASM-YGVEKCGFAWKVAGSALCSLCAWKSAALNEKPVTI 982
             + T+ I+ EA+A+YHVTY+ A + Y +EKCGFAWKVAGSALC + A       E    I
Sbjct: 955  VRKTKDIFNEALALYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMYH---KENAFPI 1011

Query: 981  LPSVLRSLL 955
            LPS+L+ +L
Sbjct: 1012 LPSILQDIL 1020


>ref|XP_010322170.1| PREDICTED: probable RNA-dependent RNA polymerase 3 [Solanum
            lycopersicum] gi|723706114|ref|XP_010322171.1| PREDICTED:
            probable RNA-dependent RNA polymerase 3 [Solanum
            lycopersicum]
          Length = 1014

 Score =  852 bits (2200), Expect = 0.0
 Identities = 486/1031 (47%), Positives = 659/1031 (63%), Gaps = 27/1031 (2%)
 Frame = -1

Query: 3966 VDVRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPIK-TFS 3790
            +D  LP SVE ++ R+  E+  +P     R+ L  IGE+GSL++L  +  S  PIK + S
Sbjct: 12   LDAPLPYSVETMLDRICKEQGQKPPCTGIRRRLSSIGEKGSLEMLKII--SRRPIKKSLS 69

Query: 3789 GFVSFLVKQKYPIHKSPSSASPLGLRSPSSASPNIARNGEG--LQSPLSNLQRTGFQNIS 3616
             F+ +++  +YP   S SS+SP       S+SP +  + EG  LQ   S+  +     ++
Sbjct: 70   AFLVYMI-DRYPDCLS-SSSSPFNCLLKRSSSPRLFPSPEGKRLQGESSSKSKLEMGLLA 127

Query: 3615 C--------QLSFEDETLESRSCLVRDVSSLSGEHGEMTESVTISPQLLILNKLEYRKLF 3460
            C        QLSF +E                 E      S  +S QL+ILN+LE+RKLF
Sbjct: 128  CASPQKVARQLSFCEEP----------------ESNCRRTSPYVSQQLMILNELEFRKLF 171

Query: 3459 LLLSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEESDRSQYLDWDS 3280
            L+LSYI  NKLE V++   A+++   K+LSM +FE  IW  +G+     SDRS+YLDW+ 
Sbjct: 172  LVLSYIGCNKLEDVISPQIADDIVRKKNLSMTDFESEIWNAFGKACYAVSDRSKYLDWNC 231

Query: 3279 GKTHFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSVDGKYSAEKIVEQXX 3100
             KTH YYCH+  +G   FKGPYLN+LRTHLQR+LGD+NVLIVKF V+    A  I+E+  
Sbjct: 232  RKTHIYYCHIKQNGYCSFKGPYLNTLRTHLQRALGDDNVLIVKF-VEDTSCANIILEEGI 290

Query: 3099 XXXXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSISTHGNEENYILSRKS 2920
                       +KD++++ K     + K  +   +K YFV F+SI T  + E+Y+ S K+
Sbjct: 291  LVGLRRYRFFVYKDDKERKKSPAMMKTKTAS---LKCYFVRFESIGTCNDGESYVFSTKT 347

Query: 2919 VSEARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDIIEDIPFQDENGSIIH 2740
            +S+AR  FMH+H +S + KY AR SLILSKT KL  D  ++T++ IEDI  +DENG II 
Sbjct: 348  ISQARCKFMHVHMVSNMAKYAARLSLILSKTIKLQTDLDSVTIERIEDILCRDENGCIIQ 407

Query: 2739 DEDGKPILHTDGTGYISEDLAM---------KYITNSSSE----FATFGGTVCQERGAAA 2599
            DEDG+P +HTDGTG+ISEDLAM         +YI + + E             + R + +
Sbjct: 408  DEDGEPRIHTDGTGFISEDLAMHCPKDFSKAEYIKDENYENFVDIVDLDDVNVERRVSVS 467

Query: 2598 RINEPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQSEETLNSLE 2419
            R  +PPLL+QCRLF +G AVKGT L+NRK+   +I IRPSM+KVE D  + S  T +SLE
Sbjct: 468  RNRKPPLLMQCRLFFNGCAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPTISSIPTFDSLE 527

Query: 2418 IVNISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRSALRVASLHD 2239
            IV ISHRP + YLSK LI+LLSYGGV +E+F+ LL +AL ET+ VY  +R+AL+VA  + 
Sbjct: 528  IVAISHRPNKAYLSKNLISLLSYGGVHKEYFMELLGSALEETKQVYLRKRAALKVAINYR 587

Query: 2238 GLYWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYLMGTADPTGV 2059
             +       RMI SG+PLNEP+L   L  +            LP+S+SFYLMGTADPTGV
Sbjct: 588  EMDDECLTARMISSGIPLNEPHLHARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTGV 647

Query: 2058 LNNDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAKYGVFFSTKG 1879
            L ++EVCVILD+GQ+SG+VLVYRNPG+HFGD+HVM+A YV+EL D VG+AKYG+FFSTKG
Sbjct: 648  LESNEVCVILDNGQVSGRVLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKG 707

Query: 1878 QKSAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQKSS--NXXX 1705
             +SAA E+A GDFDGD+YW+S N +L+  +  + PW R++S P+A  + P + S      
Sbjct: 708  PRSAATEIANGDFDGDMYWVSINRKLVDSYTTSRPWIRMHSTPNAVSKKPSEFSADELEY 767

Query: 1704 XXXXXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKDSLKRKMIKLIDIYYDALD 1525
                   EA+    +M +AADSWLA+MDRLL+L DD   +  SLK KM+ LIDIYYDALD
Sbjct: 768  ELFRQFLEAKSKGANMSLAADSWLAFMDRLLTLRDDNVDDMHSLKGKMLHLIDIYYDALD 827

Query: 1524 APKSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFHDEAPPRRQEIWK 1345
            APKSGKKV +P+ L+A  FPH+M K    SY S+SILG+IYD V  + DE      EI K
Sbjct: 828  APKSGKKVSIPHYLKANKFPHYMEKGNSCSYHSTSILGQIYDHVDSYPDE-DLCITEISK 886

Query: 1344 LPCFDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKKYKQMLYEAPDME 1165
            LPCF+V I ++ +T W+  Y+ Y+++M   +N           +VIKKYK +LY A + E
Sbjct: 887  LPCFEVEIPQRCMTLWRGRYEEYKKDMTRAMNFDCELRITSCNEVIKKYKMLLYGAVEFE 946

Query: 1164 ESAKDTQVIYEEAVAIYHVTYNYASM-YGVEKCGFAWKVAGSALCSLCAWKSAALNEKPV 988
            ++ + T+ I++EA+AIYHVTY+ A + Y +EKCGFAWKVAGSALC + A       EK +
Sbjct: 947  QTVRKTEDIFDEALAIYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMYR---KEKDL 1003

Query: 987  TILPSVLRSLL 955
             ILPSVL+ +L
Sbjct: 1004 PILPSVLQEIL 1014


>ref|XP_009592437.1| PREDICTED: probable RNA-dependent RNA polymerase 3 isoform X2
            [Nicotiana tomentosiformis]
          Length = 1018

 Score =  851 bits (2199), Expect = 0.0
 Identities = 486/1029 (47%), Positives = 647/1029 (62%), Gaps = 25/1029 (2%)
 Frame = -1

Query: 3966 VDVRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPI-KTFS 3790
            ++  LP SVE +++++  E+  +P D   R+ L  IGEQGSL IL  +  SS PI KT S
Sbjct: 16   LEAPLPSSVEAMLRKICSEQCQEPPDVGIRRRLGSIGEQGSLTILRII--SSRPIRKTLS 73

Query: 3789 GFVSFLVKQKYPIHKSPSSASPLGLRSPSSA-SPNIAR-NGEGLQSPLSNL------QRT 3634
             F+ +L+ +      S   ASP    SPS   +P   R  GE    P   +      Q  
Sbjct: 74   AFLVYLMDRYPDCLSSSPFASPQKRTSPSLLPTPESKRVQGESSTKPKPKIGSSPCVQFA 133

Query: 3633 GFQNISCQLSFEDETLESRSCLVRDVSSLSGEHGEMTESVTISPQLLILNKLEYRKLFLL 3454
                +  QLSF DE     +C               T    IS QL+IL++LE+RKLFL+
Sbjct: 134  SPHRVVRQLSFRDEPSPESNC--------------RTPPPNISQQLMILSELEFRKLFLV 179

Query: 3453 LSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEESDRSQYLDWDSGK 3274
            LSYI    LE V++   A+++   K L M +FE  IW  +G+    ESDRS+YLDWD GK
Sbjct: 180  LSYIGSKTLEDVISPKIADDIVRKKTLPMTDFESEIWNAFGKACYAESDRSKYLDWDCGK 239

Query: 3273 THFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSVDGKYSAEKIVEQXXXX 3094
            TH YYCH+  +G   FKGPYLN+ RTHLQR+LGDENVLIVKF V+    A  IVE+    
Sbjct: 240  THLYYCHIKQNGYCTFKGPYLNTTRTHLQRALGDENVLIVKF-VEDACCANIIVEEGILV 298

Query: 3093 XXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSISTHGNEENYILSRKSVS 2914
                     +KD++++ K     + K  +   +K YFV F+SI T+ +  +Y+ + K  S
Sbjct: 299  GFRRYRFFVYKDDKERKKTPAIMKTKTAS---LKCYFVRFESIETYNHGGSYVFAAKRTS 355

Query: 2913 EARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDIIEDIPFQDENGSIIHDE 2734
            EAR  FMH+H +S + KY AR SLILSKT KL ++ A++T++ +EDI  +DE+G II DE
Sbjct: 356  EARCHFMHVHMVSNMAKYAARLSLILSKTIKLQVNLASVTIERVEDILCRDESGCIICDE 415

Query: 2733 DGKPILHTDGTGYISEDLAMK---------YITNSSSE----FATFGGTVCQERGAAARI 2593
            DG+P +HTDGTG+ISEDLAM+         YI + + E           + + RG  +  
Sbjct: 416  DGEPRIHTDGTGFISEDLAMRCPKDFSKAEYIKDENYENFVDIVDLEDMIAERRGNGSLN 475

Query: 2592 NEPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQSEETLNSLEIV 2413
             EPPLL+QCRLF +G AVKGT L+NRK+   +IQIRPSM+KVE D  + +  T NSLE+V
Sbjct: 476  KEPPLLMQCRLFKNGCAVKGTFLVNRKIGSRKIQIRPSMVKVETDPTISALPTFNSLEVV 535

Query: 2412 NISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRSALRVASLHDGL 2233
             I  RP + YLSK+LI+LLSYGGV  EFF+ +L +AL ET+ VY  +R+AL+VA  +  +
Sbjct: 536  AI--RPRKTYLSKHLISLLSYGGVGNEFFMEILGSALEETKQVYLKKRAALKVAINYREM 593

Query: 2232 YWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYLMGTADPTGVLN 2053
                 A R+I SGVPLNEP+L   L  +            LP+S+SFYLMGTADPTGVL 
Sbjct: 594  DDDCLAARLISSGVPLNEPHLHARLSRLAKIERSKLRGGKLPLSDSFYLMGTADPTGVLE 653

Query: 2052 NDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAKYGVFFSTKGQK 1873
            N+EVCVILDSGQ+SG+VLVYRNPG+HFGD+HVM+A YV+EL D VG+AKYG+FFSTKG +
Sbjct: 654  NNEVCVILDSGQVSGRVLVYRNPGLHFGDVHVMKARYVEELVDIVGDAKYGIFFSTKGPR 713

Query: 1872 SAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQKSS--NXXXXX 1699
            SAA E+A GDFDGD+YW+S N +L+  ++A++PW R++S P A  + P + S        
Sbjct: 714  SAASEIANGDFDGDMYWVSINRKLVDSYRASKPWTRMHSTPKAVSKKPTEFSADELEYEL 773

Query: 1698 XXXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKDSLKRKMIKLIDIYYDALDAP 1519
                  A+    SM +AADSWLA+MD LL L DD      SLK K++ LIDIYYDALDAP
Sbjct: 774  FRQFLGAKSKGASMSVAADSWLAFMDLLLMLRDDDVDGMHSLKGKILHLIDIYYDALDAP 833

Query: 1518 KSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFHDEAPPRRQEIWKLP 1339
            KSGKKV +P+DL+A  FPH+M +    SY S+SILG+IYD V  + DE      EI KLP
Sbjct: 834  KSGKKVSIPHDLKANRFPHYMERGNPFSYHSTSILGQIYDYVDSYPDE-DLCITEISKLP 892

Query: 1338 CFDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKKYKQMLYEAPDMEES 1159
            CFDV I ++ +  W   Y+ Y+++M   +N           +VIKKYK++LY AP+ E+S
Sbjct: 893  CFDVEIPDECMALWGERYEEYKKDMTMAMNSGCEVKNSACNEVIKKYKKLLYGAPEFEQS 952

Query: 1158 AKDTQVIYEEAVAIYHVTYNYASM-YGVEKCGFAWKVAGSALCSLCAWKSAALNEKPVTI 982
             + T+ I+ EA+A+YHVTY+ A + Y +EKCGFAWKVAGSALC + A       E    I
Sbjct: 953  VRKTKDIFNEALALYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMYH---KENAFPI 1009

Query: 981  LPSVLRSLL 955
            LPS+L+ +L
Sbjct: 1010 LPSILQDIL 1018


>ref|XP_009760371.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2
            [Nicotiana sylvestris]
          Length = 1058

 Score =  835 bits (2158), Expect = 0.0
 Identities = 492/1043 (47%), Positives = 641/1043 (61%), Gaps = 40/1043 (3%)
 Frame = -1

Query: 3960 VRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPIKTFSGFV 3781
            ++LP SVE ++ ++   ++  P+D   R+LL  IGE+GSL IL  + S     KT SGF+
Sbjct: 17   IKLPPSVEQMLNQICKNQRQNPIDEKVRRLLLSIGEEGSLDILSKI-SVCQIKKTLSGFI 75

Query: 3780 SFLVKQKYP------IHKSPSSASP----------LGLRSPSSASPNI---ARNGEGLQS 3658
             F+ K+ Y         ++P S++           + L SP+S+S ++    RNG   Q+
Sbjct: 76   VFMAKKYYQSETQQFYQQTPVSSAESFFQSPQIQRISLSSPNSSSSSVNFSPRNGPLFQA 135

Query: 3657 PLSNLQRTGFQN-ISCQLSFEDETLESRSCLVRDVSS-LSGEHGEMTESVTISPQLLILN 3484
             + N    G  +  S        T   R+   RD    +  E+        IS QLL L+
Sbjct: 136  TVHNNVGDGSDSPTSAPQMLSPPTSPERTNFRRDSHDPMPSEYRNRAGIQGISKQLLALS 195

Query: 3483 KLEYRKLFLLLSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEESDR 3304
             LE+RKLFL+L YI R KLE V+ + D  E+  M    M  FE  IW +YG   CE   R
Sbjct: 196  NLEFRKLFLILHYIGRRKLEDVIMLHDVGEILDMTCQPMAHFESYIWTKYGH-LCENVKR 254

Query: 3303 SQYLDWDSGKTHFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSVDGKYSA 3124
             QYLDWDSG++HFY+CHV SDGSY FKGPYL + RTHLQ+SLGDEN+L+V+F  +     
Sbjct: 255  VQYLDWDSGRSHFYHCHVYSDGSYAFKGPYLKAERTHLQQSLGDENILVVRFMEEAPRCP 314

Query: 3123 EKIVEQXXXXXXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSISTHGNEE 2944
            ++IV+              +KD+ KK K + D E+K  T   VK YFV  +S++ + N  
Sbjct: 315  QEIVKNGILIGLRRYHFFVYKDDGKK-KNSMDKEEKIDT---VKCYFVRMESLNPYENL- 369

Query: 2943 NYILSRKSVSEARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDIIEDIPFQ 2764
             YIL  K V +AR  FMH+H +S++ KYMARFSLILS T KL +D  ++ +D IEDI   
Sbjct: 370  TYILYDKIVHKARCRFMHVHMVSSMAKYMARFSLILSTTVKLQVDLNSVNIDRIEDIYCH 429

Query: 2763 DENGSIIHDEDGKPILHTDGTGYISEDLAMKY--------ITNSSSEFATFG---GTVCQ 2617
            D+NG  ++DEDGKP++HTDGTGYISEDLA K           N+  E  + G   G    
Sbjct: 430  DKNGRTLYDEDGKPLIHTDGTGYISEDLARKCPQDFFNVKYKNAKLERYSNGVEPGENSS 489

Query: 2616 ERGAAA-RINEPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQSE 2440
            E G A  +  EPPLL+QCRLF++G AVKGTLL+NRKL    IQIRPSMIKVE D  L   
Sbjct: 490  EVGEAEFQSGEPPLLMQCRLFYNGLAVKGTLLVNRKLPRCTIQIRPSMIKVEADPKLSRT 549

Query: 2439 ETLNSLEIVNISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRSAL 2260
               NSLEIV  S +P   YLS+ LIALL+YGGVP E+F ++L+N L ETQ +YS+  +AL
Sbjct: 550  RMFNSLEIVTPSFKPRNTYLSRTLIALLTYGGVPAEYFFDILNNTLEETQRLYSDEVTAL 609

Query: 2259 RVASLHDGLYWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYLMG 2080
            +VA+ H        A  MI   VPL EPYL+ CL ++            LP+S++FYLMG
Sbjct: 610  KVAANHRDRDDASIATGMIMVVVPLCEPYLRCCLSSLAKEERNGLKGGKLPISDTFYLMG 669

Query: 2079 TADPTGVLNNDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAKYG 1900
            TADPT  LN  EVCVIL+ GQISG+VLVYRNPG+HFGDIH + A+ VK L D VGNAKYG
Sbjct: 670  TADPTDTLNPHEVCVILEHGQISGEVLVYRNPGLHFGDIHRLLAVPVKNLGDVVGNAKYG 729

Query: 1899 VFFSTKGQKSAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQ-- 1726
            +FFSTKG +SAA E+A GDFDGD YW+S+NP+LLK++ A+ PW R++S P A  R P+  
Sbjct: 730  IFFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYYHASRPWCRIHSTPKALHREPKDF 789

Query: 1725 KSSNXXXXXXXXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKD---SLKRKMIK 1555
             +            E R P+YSM  A+ SWLA MDRLL L  +   E +   ++K K+ +
Sbjct: 790  SAEEMEHELFQTFLETRMPNYSMADASSSWLALMDRLLMLRKNNTTENEETKTMKEKLFE 849

Query: 1554 LIDIYYDALDAPKSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFHDE 1375
            L D+YYDA+DAPKSG KV +P  L+ + FPH + K  +  Y S+S+LG+IYD V  F  E
Sbjct: 850  LTDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLEKKEE--YISTSVLGEIYDRVKSFKAE 907

Query: 1374 APPRRQEIWKLPCFDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKKYK 1195
            A     EI KLP F+V I E  +  W+  Y  YR EM + LN           +V+KKYK
Sbjct: 908  AAV-AVEIKKLPAFEVKIPETCLRLWEERYKKYRFEMMQALNTSSESKNDLADEVVKKYK 966

Query: 1194 QMLYEAPDMEESAKDTQVIYEEAVAIYHVTYNYASMYG-VEKCGFAWKVAGSALCSLCAW 1018
            Q+LYEAPDMEESA+ T  I+ +A+AIY VTY+YA   G V+KCGFAWKVAGSALC L A 
Sbjct: 967  QLLYEAPDMEESARSTTDIFNDALAIYRVTYDYAKAIGDVKKCGFAWKVAGSALCRLHAE 1026

Query: 1017 KSA-ALNEKPVTILPSVLRSLLN 952
              A   N+K + + PS+L  LLN
Sbjct: 1027 LHAKEHNQKIMAVSPSILHKLLN 1049


>ref|XP_010313737.1| PREDICTED: probable RNA-dependent RNA polymerase 5 [Solanum
            lycopersicum]
          Length = 1054

 Score =  834 bits (2155), Expect = 0.0
 Identities = 497/1049 (47%), Positives = 636/1049 (60%), Gaps = 45/1049 (4%)
 Frame = -1

Query: 3963 DVRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPIKTFSGF 3784
            +V LP SV+ +I ++  +++    D   R+LL  IGE+ SL IL  + S     KT SGF
Sbjct: 11   EVELPSSVQQMINQICKKERQNSPDDTVRRLLVAIGEERSLYILNEI-SKCQIKKTLSGF 69

Query: 3783 VSFLVKQKYP-----IHKSPSSASPLGLRSPSSASPNIARNGEGLQSPLSNLQRTGFQNI 3619
            + F+ K+ Y       ++  +   P+        SP I RN   L SP S+     F   
Sbjct: 70   IVFMAKKYYQSETQQFYQKQNHEQPVLSAESFYHSPQIRRNS--LSSPNSSCSSVNFSPR 127

Query: 3618 SCQLSFED-----ETLESRSCLVRDVS--------SLSGEHGEMTESVT--------ISP 3502
            +  + F+D     +T +S +   R  S        S    H + + S          IS 
Sbjct: 128  NRPI-FQDRDIVGDTSDSPTSGPRIPSPPLSPVTTSFQKCHYDPSPSKFRDRASTRGISE 186

Query: 3501 QLLILNKLEYRKLFLLLSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKF 3322
            QLL LNKLE+RK FL+L+YI R K+E V+T+ D  ++  M +  M  FE  IW +YG   
Sbjct: 187  QLLALNKLEFRKFFLILNYIGRRKVEDVITLHDVGDILDMIYQPMSHFESYIWNKYGH-L 245

Query: 3321 CEESDRSQYLDWDSGKTHFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSV 3142
            CE + R QYLDWDSG+TH Y+CHV SD SY FKGPYL + RTHLQ SLGDENVLIVKF  
Sbjct: 246  CEHNKRVQYLDWDSGRTHLYHCHVHSDRSYTFKGPYLKAERTHLQHSLGDENVLIVKFEQ 305

Query: 3141 DGKYSAEKIVEQXXXXXXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSIS 2962
            +     E+IV+              +KD+ KK    R  +DK      VK YFV  +S++
Sbjct: 306  NTPGCPEEIVQNGILVGLRRYRFFVYKDDGKK----RRLKDKEEKIDSVKCYFVRMESLN 361

Query: 2961 THGNEENYILSRKSVSEARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDII 2782
             + NE  YIL  K V EAR  FMH+H +S++ KYMARFSLILS T KL +D  ++ +D I
Sbjct: 362  PYENE-TYILHDKMVHEARCNFMHVHMVSSMAKYMARFSLILSTTVKLQVDLNSVNIDRI 420

Query: 2781 EDIPFQDENGSIIHDEDGKPILHTDGTGYISEDLAMKY------ITNSSSEFATFGGTV- 2623
            EDI   D++G II+DEDGKP++HTDGTGYISEDLA K       + +  +    +   V 
Sbjct: 421  EDIYCHDKSGRIIYDEDGKPLIHTDGTGYISEDLARKCPQDFFNVKHKCANLVRYANGVK 480

Query: 2622 ----CQERGAAA-RINEPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKD 2458
                  E G A  +  EPPLL+QCRLF++G AVKGTLL+NRKL    IQIRPSMIKVE D
Sbjct: 481  LGENSSELGEAEFQSGEPPLLMQCRLFYNGLAVKGTLLVNRKLPQRTIQIRPSMIKVEAD 540

Query: 2457 QALQSEETLNSLEIVNISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYS 2278
              L      NSLEI   S +P   YLS+ LIALL+YGGVP E+F ++L+N L ETQ +YS
Sbjct: 541  PRLSRAHMFNSLEINTPSLKPRNTYLSRTLIALLTYGGVPVEYFYDILNNTLEETQRLYS 600

Query: 2277 NRRSALRVASLHDGLYWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSE 2098
            +  +AL+VA  H        A  MI +GVPL EPYL  CL ++            LP+++
Sbjct: 601  DEVTALKVAVNHRDRDDASTATSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPIAD 660

Query: 2097 SFYLMGTADPTGVLNNDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFV 1918
            +FYLMGTADPT  LN  EVCVIL+ GQI G+VL+YRNPG+HFGDIH + A+ VK L D V
Sbjct: 661  TFYLMGTADPTDTLNRHEVCVILEHGQIFGEVLIYRNPGLHFGDIHRLLAVPVKNLGDIV 720

Query: 1917 GNAKYGVFFSTKGQKSAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEK 1738
            GNAKYG+FFSTKG +SAA E+A GDFDGD YWIS+NP+LLK+F A+ PW R++S P A  
Sbjct: 721  GNAKYGIFFSTKGPRSAATEIANGDFDGDKYWISQNPQLLKYFTASRPWSRIHSTPKALH 780

Query: 1737 RNPQKSS--NXXXXXXXXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKD---SL 1573
            R P   S             E R P+YSM  A+ +W A MDRLL LG +  IE +   S+
Sbjct: 781  REPNNFSAEEREHELFQTFLETRMPNYSMADASANWYALMDRLLILGKNNTIENEETKSV 840

Query: 1572 KRKMIKLIDIYYDALDAPKSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSV 1393
            K K+ +LID+YYDA+DAPKSG KV +P  L+ + FPH + K    SY S+S+LG+IYD V
Sbjct: 841  KEKLFELIDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQKKE--SYHSTSVLGEIYDRV 898

Query: 1392 LEFHDEAPPRRQEIWKLPCFDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXD 1213
             +F  E P    EI KLP F+V I E  +  W+  Y  YR EM+E LN            
Sbjct: 899  EKFKAEEPV-AVEIKKLPAFEVGIPETCLRLWEERYRKYRFEMKEALNTSSESKNDLADQ 957

Query: 1212 VIKKYKQMLYEAPDMEESAKDTQVIYEEAVAIYHVTYNYASMYG-VEKCGFAWKVAGSAL 1036
            VIKKYKQ+LYEAPDMEES + T  IY +A+AIY VTY+YA   G V KCGFAWKVAG+AL
Sbjct: 958  VIKKYKQLLYEAPDMEESIRSTTDIYNDALAIYRVTYDYAKAIGDVRKCGFAWKVAGTAL 1017

Query: 1035 CSLCAWKSA-ALNEKPVTILPSVLRSLLN 952
            C L A   A   N+K + + PS+L +LLN
Sbjct: 1018 CRLHAELHAKEHNQKVMAMSPSILHNLLN 1046


>ref|XP_009760370.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1
            [Nicotiana sylvestris]
          Length = 1060

 Score =  834 bits (2155), Expect = 0.0
 Identities = 492/1045 (47%), Positives = 641/1045 (61%), Gaps = 42/1045 (4%)
 Frame = -1

Query: 3960 VRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPIKTFSGFV 3781
            ++LP SVE ++ ++   ++  P+D   R+LL  IGE+GSL IL  + S     KT SGF+
Sbjct: 17   IKLPPSVEQMLNQICKNQRQNPIDEKVRRLLLSIGEEGSLDILSKI-SVCQIKKTLSGFI 75

Query: 3780 SFLVKQKYP------IHKSPSSASP----------LGLRSPSSASPNI---ARNGEGLQS 3658
             F+ K+ Y         ++P S++           + L SP+S+S ++    RNG   Q+
Sbjct: 76   VFMAKKYYQSETQQFYQQTPVSSAESFFQSPQIQRISLSSPNSSSSSVNFSPRNGPLFQA 135

Query: 3657 PLSNLQRTGFQN---ISCQLSFEDETLESRSCLVRDVSS-LSGEHGEMTESVTISPQLLI 3490
             + N    G  +    S        T   R+   RD    +  E+        IS QLL 
Sbjct: 136  TVHNNDIVGDGSDSPTSAPQMLSPPTSPERTNFRRDSHDPMPSEYRNRAGIQGISKQLLA 195

Query: 3489 LNKLEYRKLFLLLSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEES 3310
            L+ LE+RKLFL+L YI R KLE V+ + D  E+  M    M  FE  IW +YG   CE  
Sbjct: 196  LSNLEFRKLFLILHYIGRRKLEDVIMLHDVGEILDMTCQPMAHFESYIWTKYGH-LCENV 254

Query: 3309 DRSQYLDWDSGKTHFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSVDGKY 3130
             R QYLDWDSG++HFY+CHV SDGSY FKGPYL + RTHLQ+SLGDEN+L+V+F  +   
Sbjct: 255  KRVQYLDWDSGRSHFYHCHVYSDGSYAFKGPYLKAERTHLQQSLGDENILVVRFMEEAPR 314

Query: 3129 SAEKIVEQXXXXXXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSISTHGN 2950
              ++IV+              +KD+ KK K + D E+K  T   VK YFV  +S++ + N
Sbjct: 315  CPQEIVKNGILIGLRRYHFFVYKDDGKK-KNSMDKEEKIDT---VKCYFVRMESLNPYEN 370

Query: 2949 EENYILSRKSVSEARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDIIEDIP 2770
               YIL  K V +AR  FMH+H +S++ KYMARFSLILS T KL +D  ++ +D IEDI 
Sbjct: 371  L-TYILYDKIVHKARCRFMHVHMVSSMAKYMARFSLILSTTVKLQVDLNSVNIDRIEDIY 429

Query: 2769 FQDENGSIIHDEDGKPILHTDGTGYISEDLAMKY--------ITNSSSEFATFG---GTV 2623
              D+NG  ++DEDGKP++HTDGTGYISEDLA K           N+  E  + G   G  
Sbjct: 430  CHDKNGRTLYDEDGKPLIHTDGTGYISEDLARKCPQDFFNVKYKNAKLERYSNGVEPGEN 489

Query: 2622 CQERGAAA-RINEPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQ 2446
              E G A  +  EPPLL+QCRLF++G AVKGTLL+NRKL    IQIRPSMIKVE D  L 
Sbjct: 490  SSEVGEAEFQSGEPPLLMQCRLFYNGLAVKGTLLVNRKLPRCTIQIRPSMIKVEADPKLS 549

Query: 2445 SEETLNSLEIVNISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRS 2266
                 NSLEIV  S +P   YLS+ LIALL+YGGVP E+F ++L+N L ETQ +YS+  +
Sbjct: 550  RTRMFNSLEIVTPSFKPRNTYLSRTLIALLTYGGVPAEYFFDILNNTLEETQRLYSDEVT 609

Query: 2265 ALRVASLHDGLYWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYL 2086
            AL+VA+ H        A  MI   VPL EPYL+ CL ++            LP+S++FYL
Sbjct: 610  ALKVAANHRDRDDASIATGMIMVVVPLCEPYLRCCLSSLAKEERNGLKGGKLPISDTFYL 669

Query: 2085 MGTADPTGVLNNDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAK 1906
            MGTADPT  LN  EVCVIL+ GQISG+VLVYRNPG+HFGDIH + A+ VK L D VGNAK
Sbjct: 670  MGTADPTDTLNPHEVCVILEHGQISGEVLVYRNPGLHFGDIHRLLAVPVKNLGDVVGNAK 729

Query: 1905 YGVFFSTKGQKSAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQ 1726
            YG+FFSTKG +SAA E+A GDFDGD YW+S+NP+LLK++ A+ PW R++S P A  R P+
Sbjct: 730  YGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYYHASRPWCRIHSTPKALHREPK 789

Query: 1725 --KSSNXXXXXXXXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKD---SLKRKM 1561
               +            E R P+YSM  A+ SWLA MDRLL L  +   E +   ++K K+
Sbjct: 790  DFSAEEMEHELFQTFLETRMPNYSMADASSSWLALMDRLLMLRKNNTTENEETKTMKEKL 849

Query: 1560 IKLIDIYYDALDAPKSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFH 1381
             +L D+YYDA+DAPKSG KV +P  L+ + FPH + K  +  Y S+S+LG+IYD V  F 
Sbjct: 850  FELTDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLEKKEE--YISTSVLGEIYDRVKSFK 907

Query: 1380 DEAPPRRQEIWKLPCFDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKK 1201
             EA     EI KLP F+V I E  +  W+  Y  YR EM + LN           +V+KK
Sbjct: 908  AEAAV-AVEIKKLPAFEVKIPETCLRLWEERYKKYRFEMMQALNTSSESKNDLADEVVKK 966

Query: 1200 YKQMLYEAPDMEESAKDTQVIYEEAVAIYHVTYNYASMYG-VEKCGFAWKVAGSALCSLC 1024
            YKQ+LYEAPDMEESA+ T  I+ +A+AIY VTY+YA   G V+KCGFAWKVAGSALC L 
Sbjct: 967  YKQLLYEAPDMEESARSTTDIFNDALAIYRVTYDYAKAIGDVKKCGFAWKVAGSALCRLH 1026

Query: 1023 AWKSA-ALNEKPVTILPSVLRSLLN 952
            A   A   N+K + + PS+L  LLN
Sbjct: 1027 AELHAKEHNQKIMAVSPSILHKLLN 1051


>ref|XP_009603362.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X2
            [Nicotiana tomentosiformis]
          Length = 1061

 Score =  823 bits (2126), Expect = 0.0
 Identities = 487/1045 (46%), Positives = 632/1045 (60%), Gaps = 42/1045 (4%)
 Frame = -1

Query: 3960 VRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPIKTFSGFV 3781
            ++LP SVE ++ ++   ++    D   R+LL  IGE+GSL IL  + S S   KT SGF+
Sbjct: 18   IKLPPSVEQMLNQICKNQRQNLPDKKVRRLLLSIGEEGSLDILSEI-SVSQIKKTLSGFI 76

Query: 3780 SFLVKQKYP------IHKSPSSASP------------LGLRSPSSASPNI---ARNGEGL 3664
             F+ K+ Y         + P+  S             + L SP+S+S +I    R G   
Sbjct: 77   VFMAKKYYQSETQQFYQQQPTQVSSAESFFQSPQIQRISLSSPNSSSSSINFSPRIGPLF 136

Query: 3663 QSPLSNLQRTGFQN-ISCQLSFEDETLESRSCLVRDV-SSLSGEHGEMTESVTISPQLLI 3490
            Q+ + N    G  +  S            R+   RD+      E         IS QLL 
Sbjct: 137  QATVHNNVGDGSDSPTSAPQMLSPPMSPERTIFQRDLYDPTPSEFRNRAGIQGISEQLLA 196

Query: 3489 LNKLEYRKLFLLLSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEES 3310
            L+ LE+RKLFL+L YI R KLE V+ + D  ++  M    M  FE  IW +YG   CE  
Sbjct: 197  LSNLEFRKLFLILHYIGRRKLEDVIMLHDVGDILDMTCQPMAHFESCIWTKYGH-LCENV 255

Query: 3309 DRSQYLDWDSGKTHFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSVDGKY 3130
             R QYLDWDSG++HFY+CHV SDGSY FKGPYL + RTHLQ+SLGDEN+L+V+F  +   
Sbjct: 256  KRVQYLDWDSGRSHFYHCHVYSDGSYAFKGPYLKAERTHLQQSLGDENILVVRFMEEAPR 315

Query: 3129 SAEKIVEQXXXXXXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSISTHGN 2950
              ++IV+              +KD+ KK K + D E+K  T   VK YFV  +S++ + N
Sbjct: 316  CPQEIVKNGILVGLRRYRFFVYKDDGKK-KNSMDKEEKIDT---VKCYFVRMESLNPYEN 371

Query: 2949 EENYILSRKSVSEARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDIIEDIP 2770
               YIL  K V EAR  FMH+H + ++ KYMARFSLILS T KL +D  ++ +D IEDI 
Sbjct: 372  L-TYILHNKIVHEARCRFMHVHMVPSMAKYMARFSLILSTTVKLQVDLNSVNIDRIEDIY 430

Query: 2769 FQDENGSIIHDEDGKPILHTDGTGYISEDLAMKY--------ITNSSSEFATFG---GTV 2623
              D+NG  ++DEDGKP++HTDGTGYISEDLA K           N+  E    G   G  
Sbjct: 431  CHDKNGRTLYDEDGKPLIHTDGTGYISEDLARKCPQDFFNVKYKNAKLERYPNGVELGES 490

Query: 2622 CQERGAAA-RINEPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQ 2446
              E G A  +  EPPLL+QCRLF++G AVKGTLL+NRKL  G IQIRPSMIKVE D  L 
Sbjct: 491  SSELGEAEFQSGEPPLLMQCRLFYNGLAVKGTLLVNRKLPRGTIQIRPSMIKVEADPKLS 550

Query: 2445 SEETLNSLEIVNISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRS 2266
                 NSLEIV  S +P   YLS+ LIALL+YGGVP E+F ++L+N L ETQ +YS+  +
Sbjct: 551  RARMFNSLEIVTPSFKPRNTYLSRTLIALLTYGGVPGEYFFDILNNTLEETQRLYSDEVT 610

Query: 2265 ALRVASLHDGLYWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYL 2086
            AL+VA+ H        A  MI +GVPL EPYL+ CL ++            LP+S++FYL
Sbjct: 611  ALKVAANHRDRDDASIATGMIMAGVPLCEPYLRCCLSSLAKEERNGLKGGKLPISDTFYL 670

Query: 2085 MGTADPTGVLNNDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAK 1906
            MGTADPT  LN  EVCVIL+ GQISG+VLVYRNPG+HFGDIH + A+ VK L D VGNAK
Sbjct: 671  MGTADPTDTLNPHEVCVILEHGQISGEVLVYRNPGLHFGDIHRLLAVPVKNLGDVVGNAK 730

Query: 1905 YGVFFSTKGQKSAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQ 1726
            YG+ FSTKG +SAA E+A GDFDGD YW+S+NP+LLK+++A+ PW R++S P    R P 
Sbjct: 731  YGILFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYYRASRPWSRIHSTPKTLHREPN 790

Query: 1725 --KSSNXXXXXXXXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKD---SLKRKM 1561
               +            E R P+YSM  A+ SWLA +DRLL L  +   E +   ++K K+
Sbjct: 791  DFSAEEMEHELFQTFLETRMPNYSMADASSSWLALVDRLLILRKNYTTENEETKTMKEKL 850

Query: 1560 IKLIDIYYDALDAPKSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFH 1381
             +L D+YYDA+DAPKSG KV +P  L+ + FPH + K  +  Y S+S+LG+IYD V  F 
Sbjct: 851  FELTDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLEKKAE--YISTSVLGEIYDRVKSFK 908

Query: 1380 DEAPPRRQEIWKLPCFDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKK 1201
             E      EI KLP F+V I E  +  W+  Y  YR EM + LN           +V+KK
Sbjct: 909  AE-EAAAVEIKKLPAFEVKIPETCLRLWEERYKKYRFEMMQALNTSSESKNDLADEVVKK 967

Query: 1200 YKQMLYEAPDMEESAKDTQVIYEEAVAIYHVTYNYASMYG-VEKCGFAWKVAGSALCSLC 1024
            YKQ+LYEA DMEESA+ T  I+ +A+AIY VTY+YA   G V+KCGFAWKVAGSALC L 
Sbjct: 968  YKQLLYEATDMEESARSTTDIFNDALAIYRVTYDYAKAIGDVKKCGFAWKVAGSALCRLH 1027

Query: 1023 AWKSA-ALNEKPVTILPSVLRSLLN 952
            A   A   N+K + + PS+L  LLN
Sbjct: 1028 AELHAKEHNQKVMAVSPSILHKLLN 1052


>ref|XP_009603361.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1
            [Nicotiana tomentosiformis]
          Length = 1063

 Score =  822 bits (2123), Expect = 0.0
 Identities = 486/1057 (45%), Positives = 635/1057 (60%), Gaps = 54/1057 (5%)
 Frame = -1

Query: 3960 VRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPIKTFSGFV 3781
            ++LP SVE ++ ++   ++    D   R+LL  IGE+GSL IL  + S S   KT SGF+
Sbjct: 18   IKLPPSVEQMLNQICKNQRQNLPDKKVRRLLLSIGEEGSLDILSEI-SVSQIKKTLSGFI 76

Query: 3780 SFLVKQKYP------IHKSPSSASP------------LGLRSPSSASPNIARN------- 3676
             F+ K+ Y         + P+  S             + L SP+S+S +I  +       
Sbjct: 77   VFMAKKYYQSETQQFYQQQPTQVSSAESFFQSPQIQRISLSSPNSSSSSINFSPRIGPLF 136

Query: 3675 ----------GEGLQSPLSNLQRTGFQNISCQLSFEDETLESRSCLVRDVSSLSGEHGEM 3526
                      G+G  SP S  Q         +  F+ +  +      R+ + + G     
Sbjct: 137  QATVHNNDIVGDGSDSPTSAPQMLSPPMSPERTIFQRDLYDPTPSEFRNRAGIQG----- 191

Query: 3525 TESVTISPQLLILNKLEYRKLFLLLSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNI 3346
                 IS QLL L+ LE+RKLFL+L YI R KLE V+ + D  ++  M    M  FE  I
Sbjct: 192  -----ISEQLLALSNLEFRKLFLILHYIGRRKLEDVIMLHDVGDILDMTCQPMAHFESCI 246

Query: 3345 WARYGRKFCEESDRSQYLDWDSGKTHFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDEN 3166
            W +YG   CE   R QYLDWDSG++HFY+CHV SDGSY FKGPYL + RTHLQ+SLGDEN
Sbjct: 247  WTKYGH-LCENVKRVQYLDWDSGRSHFYHCHVYSDGSYAFKGPYLKAERTHLQQSLGDEN 305

Query: 3165 VLIVKFSVDGKYSAEKIVEQXXXXXXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSY 2986
            +L+V+F  +     ++IV+              +KD+ KK K + D E+K  T   VK Y
Sbjct: 306  ILVVRFMEEAPRCPQEIVKNGILVGLRRYRFFVYKDDGKK-KNSMDKEEKIDT---VKCY 361

Query: 2985 FVHFDSISTHGNEENYILSRKSVSEARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDF 2806
            FV  +S++ + N   YIL  K V EAR  FMH+H + ++ KYMARFSLILS T KL +D 
Sbjct: 362  FVRMESLNPYENL-TYILHNKIVHEARCRFMHVHMVPSMAKYMARFSLILSTTVKLQVDL 420

Query: 2805 AAITVDIIEDIPFQDENGSIIHDEDGKPILHTDGTGYISEDLAMKY--------ITNSSS 2650
             ++ +D IEDI   D+NG  ++DEDGKP++HTDGTGYISEDLA K           N+  
Sbjct: 421  NSVNIDRIEDIYCHDKNGRTLYDEDGKPLIHTDGTGYISEDLARKCPQDFFNVKYKNAKL 480

Query: 2649 EFATFG---GTVCQERGAAA-RINEPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRP 2482
            E    G   G    E G A  +  EPPLL+QCRLF++G AVKGTLL+NRKL  G IQIRP
Sbjct: 481  ERYPNGVELGESSSELGEAEFQSGEPPLLMQCRLFYNGLAVKGTLLVNRKLPRGTIQIRP 540

Query: 2481 SMIKVEKDQALQSEETLNSLEIVNISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNAL 2302
            SMIKVE D  L      NSLEIV  S +P   YLS+ LIALL+YGGVP E+F ++L+N L
Sbjct: 541  SMIKVEADPKLSRARMFNSLEIVTPSFKPRNTYLSRTLIALLTYGGVPGEYFFDILNNTL 600

Query: 2301 NETQNVYSNRRSALRVASLHDGLYWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXX 2122
             ETQ +YS+  +AL+VA+ H        A  MI +GVPL EPYL+ CL ++         
Sbjct: 601  EETQRLYSDEVTALKVAANHRDRDDASIATGMIMAGVPLCEPYLRCCLSSLAKEERNGLK 660

Query: 2121 XXXLPVSESFYLMGTADPTGVLNNDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIY 1942
               LP+S++FYLMGTADPT  LN  EVCVIL+ GQISG+VLVYRNPG+HFGDIH + A+ 
Sbjct: 661  GGKLPISDTFYLMGTADPTDTLNPHEVCVILEHGQISGEVLVYRNPGLHFGDIHRLLAVP 720

Query: 1941 VKELEDFVGNAKYGVFFSTKGQKSAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRV 1762
            VK L D VGNAKYG+ FSTKG +SAA E+A GDFDGD YW+S+NP+LLK+++A+ PW R+
Sbjct: 721  VKNLGDVVGNAKYGILFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYYRASRPWSRI 780

Query: 1761 YSVPDAEKRNPQ--KSSNXXXXXXXXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAI 1588
            +S P    R P    +            E R P+YSM  A+ SWLA +DRLL L  +   
Sbjct: 781  HSTPKTLHREPNDFSAEEMEHELFQTFLETRMPNYSMADASSSWLALVDRLLILRKNYTT 840

Query: 1587 EKD---SLKRKMIKLIDIYYDALDAPKSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSI 1417
            E +   ++K K+ +L D+YYDA+DAPKSG KV +P  L+ + FPH + K  +  Y S+S+
Sbjct: 841  ENEETKTMKEKLFELTDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLEKKAE--YISTSV 898

Query: 1416 LGKIYDSVLEFHDEAPPRRQEIWKLPCFDVSISEKHVTEWKTNYDCYRREMREVLNXXXX 1237
            LG+IYD V  F  E      EI KLP F+V I E  +  W+  Y  YR EM + LN    
Sbjct: 899  LGEIYDRVKSFKAE-EAAAVEIKKLPAFEVKIPETCLRLWEERYKKYRFEMMQALNTSSE 957

Query: 1236 XXXXXXXDVIKKYKQMLYEAPDMEESAKDTQVIYEEAVAIYHVTYNYASMYG-VEKCGFA 1060
                   +V+KKYKQ+LYEA DMEESA+ T  I+ +A+AIY VTY+YA   G V+KCGFA
Sbjct: 958  SKNDLADEVVKKYKQLLYEATDMEESARSTTDIFNDALAIYRVTYDYAKAIGDVKKCGFA 1017

Query: 1059 WKVAGSALCSLCAWKSA-ALNEKPVTILPSVLRSLLN 952
            WKVAGSALC L A   A   N+K + + PS+L  LLN
Sbjct: 1018 WKVAGSALCRLHAELHAKEHNQKVMAVSPSILHKLLN 1054


>emb|CDP03268.1| unnamed protein product [Coffea canephora]
          Length = 875

 Score =  813 bits (2100), Expect = 0.0
 Identities = 440/872 (50%), Positives = 594/872 (68%), Gaps = 13/872 (1%)
 Frame = -1

Query: 3531 EMTESVTISPQLLILNKLEYRKLFLLLSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEK 3352
            ++T  V    + L+ +KLEYRKLFL+ SYI R K E V++ DDA+++  MK L M  FE 
Sbjct: 23   KITPEVFSYQRTLLTSKLEYRKLFLIYSYIGRRKFEDVVSDDDADQILEMKDLPMGNFES 82

Query: 3351 NIWARYGRKFCEESDRSQYLDWDSGKTHFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGD 3172
             IW  YG+++   +DR Q  +WD+GKTH YYC+V +DGS  FKGP L++  THLQR+LGD
Sbjct: 83   RIWDAYGKRYVP-ADRRQSTEWDTGKTHLYYCYVYADGSCSFKGPCLDTTSTHLQRTLGD 141

Query: 3171 ENVLIVKFSVDGKYSAEKIVEQXXXXXXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVK 2992
            +N+LIVKF+ DG+   ++I+++              K +++  K      DK      V+
Sbjct: 142  DNILIVKFAEDGRSCIDRILKEGILVGLRCYQFFGTKKQKEMEK------DKTSLSPAVR 195

Query: 2991 SYFVHFDSISTHGNEENYILSRKSVSEARRLFMHIHTLSTLEKYMARFSLILSKTTKLYL 2812
             YFV++DSI+  GN E+Y L   ++++AR  FMH+H +S+L KYMARFSLILSKT KL +
Sbjct: 196  CYFVNYDSIAARGNSESYSLCPSNLNKARCHFMHVHMVSSLAKYMARFSLILSKTIKLPV 255

Query: 2811 DFAAITVDIIEDIPFQDENGSIIHDEDGKPILHTDGTGYISEDLAMKYITN-SSSEFAT- 2638
            D ++I ++ IEDIP +DENG  I DEDG+ ++ TDGTG+ISEDLA+K   N  S++F   
Sbjct: 256  DLSSIVIESIEDIPCRDENGDEILDEDGEVLVLTDGTGFISEDLALKCPQNFCSAKFLKD 315

Query: 2637 --FGGTVCQERGAAARINEP-PLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKV 2467
              F  T          ++ P PLL+QCRLF  G AVKGTLL+NRK       IR SM+KV
Sbjct: 316  NDFEVTCYAYNEEFECLDHPNPLLMQCRLFSRGLAVKGTLLVNRK-------IRSSMVKV 368

Query: 2466 EKDQALQSEETLNSLEIVNISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQN 2287
            ++D       T +SLEIV +SH+P R  LSK LIALLSYGGVP+ FFL++L   L ETQ 
Sbjct: 369  KRDIRCPVAPTFDSLEIVAVSHKPRRCQLSKNLIALLSYGGVPRNFFLDILRTVLEETQA 428

Query: 2286 VYSNRRSALRVASLHDGLYWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLP 2107
            +++N  +AL+V+  +  +  G+   RMI +GVPL+EP+LQ  L  +            LP
Sbjct: 429  LFTNLHAALKVSIRNGDMDDGWTTARMILAGVPLSEPHLQDRLAKLANFERKSLKEGKLP 488

Query: 2106 VSESFYLMGTADPTGVLNNDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELE 1927
            +SESFY+MGTADPTG+L  +EVCVIL++GQISGKVLVYRNPG+HFGD+HV+EA+YVKELE
Sbjct: 489  ISESFYVMGTADPTGLLKANEVCVILENGQISGKVLVYRNPGLHFGDVHVLEAVYVKELE 548

Query: 1926 DFVGNAKYGVFFSTKGQKSAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPD 1747
            D +GNAK+G+FFSTKGQ+S A E+A GDFDGD+YW+SRNP+LLK+F+A+EPW RVYS P 
Sbjct: 549  DVIGNAKFGIFFSTKGQRSVANEIANGDFDGDMYWVSRNPQLLKYFRASEPWTRVYSSPP 608

Query: 1746 AEKRNPQ--KSSNXXXXXXXXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKDSL 1573
            AE + P    +            E R+ S++M +AA SWLA+MDRLL L D+ A + D L
Sbjct: 609  AENKKPSDFSAEALEYELFRLSLEKRKQSFNMAVAAHSWLAFMDRLLVLRDENAGDTDGL 668

Query: 1572 KRKMIKLIDIYYDALDAPKSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSV 1393
            +++++KL+DIYYDALDAPKSGKKV+VP+DL A+ +PH+MGK    SY S+SILG I+D  
Sbjct: 669  RQQILKLVDIYYDALDAPKSGKKVNVPSDLIAKSYPHYMGKGN--SYHSTSILGDIFDQT 726

Query: 1392 LEFHDEAPPRRQ--EIWKLPCFDVSISEKHVTEWKTNYDCYRREMREVLN---XXXXXXX 1228
             +F  E   RR   EIWKLPCF+  I E++++ W   YD YR EMR+ L           
Sbjct: 727  EQFQSE---RRSIGEIWKLPCFNSRIPEEYLSMWMARYDDYRYEMRDALEQNPADDDLKN 783

Query: 1227 XXXXDVIKKYKQMLYEAPDMEESAKDTQVIYEEAVAIYHVTYNYASMYG-VEKCGFAWKV 1051
                 VIKKYK++LYEA +++ES K  + I  EA+AIYHV+Y++A   G + KC FAW+V
Sbjct: 784  KAADRVIKKYKELLYEAAELQESKKKMEEINNEALAIYHVSYDHAIGRGCISKCSFAWRV 843

Query: 1050 AGSALCSLCAWKSAALNEKPVTILPSVLRSLL 955
            AGSALC+L A  + + NE P+ ++PSVLR+ L
Sbjct: 844  AGSALCNLHA-SNTSTNEYPMLVVPSVLRNAL 874


>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 1110

 Score =  805 bits (2079), Expect = 0.0
 Identities = 496/1102 (45%), Positives = 637/1102 (57%), Gaps = 98/1102 (8%)
 Frame = -1

Query: 3963 DVRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPIKTFSGF 3784
            +V LP SV+ +I ++  +++    D   R+LL  IGE+ SL IL  + S     KT SGF
Sbjct: 11   EVELPHSVQQMINQICKKERQNSPDDKVRRLLVAIGEERSLCILREI-SKCQIKKTLSGF 69

Query: 3783 V-------------SFLVKQKY--PI-------HKSPSSASPLGLRSPSSASPNIA-RN- 3676
            +              F  KQ Y  P+       H      S L   + S +S N + RN 
Sbjct: 70   IVFMAKKYYQSETQQFYQKQNYEEPVPSAESFYHSPQIRRSSLSSPNSSCSSVNFSPRNR 129

Query: 3675 ---------GEGLQSPLSNLQRTGFQNISCQLSFEDETLESRSCLVRDVSSLSGEH---- 3535
                     G+   SP S  +           SF+ +  + R    RD +S  G      
Sbjct: 130  PIFQDNDIVGDASDSPTSAPRIPSPPMSPVTTSFQRDHYDPRPSTFRDRASTRGISEQLL 189

Query: 3534 -----GEMTESVT-------------------------------------ISPQLLILNK 3481
                 G+ ++S T                                     IS QLL L+K
Sbjct: 190  ALNIVGDASDSPTSAPRIPSPPMSPVTTSFQRDHYDPRPSTFRDRASTRGISEQLLALSK 249

Query: 3480 LEYRKLFLLLSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEESDRS 3301
            LE+RK FL+L+YI R K+E V+ + D  ++  M +  M  FE  IW +YG   CE + R 
Sbjct: 250  LEFRKFFLILNYIGRRKVEDVIMLHDVGDILDMIYQPMSHFESYIWNKYGH-LCEHNKRV 308

Query: 3300 QYLDWDSGKTHFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKFSVDGKYSAE 3121
            QYLDWDSG+TH Y+CHV SDGSY FKGPYL + RTHLQ+SLGDENVLIVKF  +     E
Sbjct: 309  QYLDWDSGRTHLYHCHVHSDGSYTFKGPYLKAERTHLQQSLGDENVLIVKFEQNTPGCPE 368

Query: 3120 KIVEQXXXXXXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSISTHGNEEN 2941
            +IV+              +KD+ KK    R  +DK      VK YFV  +S++ +  +E 
Sbjct: 369  EIVQNGILVGLRRYRFFVYKDDGKK----RSSKDKEEKIDSVKCYFVRMESLNPY-EKET 423

Query: 2940 YILSRKSVSEARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDIIEDIPFQD 2761
            YIL  K V EAR  FMH+H +S++ KYMARFSL LS T KL +D  ++ +D IEDI   D
Sbjct: 424  YILRDKMVHEARCNFMHVHMVSSMAKYMARFSLTLSTTVKLQVDLNSVNIDRIEDICCHD 483

Query: 2760 ENGSIIHDEDGKPILHTDGTGYISEDLAMKYITN--------SSSEFATFG---GTVCQE 2614
            ++G II+DEDGKP++HTDGTGYISEDLA K   +        ++ E  T G   G    E
Sbjct: 484  KSGRIIYDEDGKPLIHTDGTGYISEDLARKCPQDFFNVKHRCANLERYTNGVKLGENSSE 543

Query: 2613 RGAAA-RINEPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQSEE 2437
             G A  +  EPPLL+QCRLF++G AVKGTLL+NRKL    IQIRPSMIKVE D  L   +
Sbjct: 544  LGEAEFQSGEPPLLMQCRLFYNGLAVKGTLLVNRKLPRRTIQIRPSMIKVEADPRLSRAQ 603

Query: 2436 TLNSLEIVNISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRSALR 2257
              NSLEI   S +P   YLS+ LIALL+YGGVP E+F ++L+N L ETQ +YS+  +AL+
Sbjct: 604  MFNSLEINTPSLKPRNTYLSRTLIALLTYGGVPVEYFYDILNNTLEETQRLYSDEVTALK 663

Query: 2256 VASLHDGLYWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYLMGT 2077
            VA  H        A  MI +GVPL EPYL  CL ++            LP++++FYLMGT
Sbjct: 664  VAVNHRDRDDASTATSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPIADTFYLMGT 723

Query: 2076 ADPTGVLNNDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAKYGV 1897
            ADPT  LN  EVCVIL+ GQI G+VLVYRNPG+HFGDIH + A+ VK L D VGNAKYG+
Sbjct: 724  ADPTDTLNPHEVCVILEHGQIFGEVLVYRNPGLHFGDIHRLLAVPVKNLGDIVGNAKYGI 783

Query: 1896 FFSTKGQKSAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQKSS 1717
            FFSTKG +SAA E+A GDFDGD YW+S+NP+LLK+F A+ PW R++S P    R P   S
Sbjct: 784  FFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYFTASRPWSRIHSTPKTLHREPNNFS 843

Query: 1716 --NXXXXXXXXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKD---SLKRKMIKL 1552
                         E R P+YSM  A+ +W A MDRLL LG +   E +   S+K K+ +L
Sbjct: 844  AEEREHDLFQTFLETRMPNYSMADASANWYALMDRLLILGKNNTTENEEIKSVKEKLFEL 903

Query: 1551 IDIYYDALDAPKSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFHDEA 1372
            ID+YYDA+DAPKSG KV +P  L+ + FPH + K    SY S+S+LG+IYD V +F  E 
Sbjct: 904  IDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLQKKE--SYHSTSVLGEIYDRVEKFKAE- 960

Query: 1371 PPRRQEIWKLPCFDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKKYKQ 1192
             P   EI KL  F+V I +  +  W+  Y  YR EM+E LN            VIKKYKQ
Sbjct: 961  EPAAVEIKKLSAFEVGIPDTCLRLWEERYRNYRFEMKEALNTSSESKNDLADQVIKKYKQ 1020

Query: 1191 MLYEAPDMEESAKDTQVIYEEAVAIYHVTYNYASMYG-VEKCGFAWKVAGSALCSLCAWK 1015
            +LYEAPDMEES + T  +Y +A+AIY VTY+YA   G V KCGFAWKVAG+ALC L A  
Sbjct: 1021 LLYEAPDMEESIRSTTDMYNDALAIYCVTYDYAKAIGDVRKCGFAWKVAGAALCKLHAEL 1080

Query: 1014 SA-ALNEKPVTILPSVLRSLLN 952
             A   N+K + + PS+L  LLN
Sbjct: 1081 HAKEHNQKVMAMSPSILHKLLN 1102


>ref|XP_010656269.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Vitis
            vinifera]
          Length = 954

 Score =  793 bits (2048), Expect = 0.0
 Identities = 463/1035 (44%), Positives = 618/1035 (59%), Gaps = 30/1035 (2%)
 Frame = -1

Query: 3966 VDVRLPESVEDIIKRVSMEKQTQPLDFNARKLLRDIGEQGSLQILGTVLSSSSPIKTFSG 3787
            ++V LP SVE +++R+  E+Q  P + + R+ L  +GE+ +L++L  +  S   I+  S 
Sbjct: 1    MEVSLPHSVEQMLQRICTEQQQPPPEAHTRRNLASLGEESTLELLRKI--SHLKIRNLSA 58

Query: 3786 FVSFLVKQKYPIHKSPSSASPLGLRSPSSASPNIARNGEGLQSPLSNLQRTGFQNISCQL 3607
             ++++V +      +  S +P  L                + SP S  ++   Q      
Sbjct: 59   LINYMVGKAAQGDAASHSPTPKHL----------------ISSPSSTPKKARRQ------ 96

Query: 3606 SFEDETLESRSCLVRDVSSLSGEHGEMTESVTISPQLLILNKLEYRKLFLLLSYIKRNKL 3427
                                             SPQL+ L +LE+RK FL+LSYI   + 
Sbjct: 97   -------------------------------ASSPQLVALGELEFRKAFLILSYIGDKRP 125

Query: 3426 EAVLTMDDANEVFSMKHLSMPEFEKNIWARYGRKFCEESDRSQYLDWDSGKTHFYYCHVS 3247
            E +L+   A E+  +K+L M  FE  +W   GRKF +E DR +  DWDS KTH Y+CHVS
Sbjct: 126  EDLLS---AEEILKLKNLPMGVFETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYHCHVS 182

Query: 3246 SDGSYYFKGPYLNSLRTHLQRSLGDENVLIVKF------------SVDGKYSAEKIVEQX 3103
             DGSY FKGPYLN  RTHLQR LGDEN+L+VKF            S D   S  KI  + 
Sbjct: 183  PDGSYRFKGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTDSNASYNKIAREG 242

Query: 3102 XXXXXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFDSISTHGNEENYILSRK 2923
                        FKD  K+ KK      KN T S VK YFV  +S +         LS K
Sbjct: 243  IFVGLRQYRFFVFKDGGKEEKK------KNPT-SSVKCYFVFMESSA---------LSGK 286

Query: 2922 SVSEARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITVDIIEDIPFQDENGSII 2743
            +V EAR +FMH H +S++ KYMARFSLILSKT KL +D + + +  I+D P +DE+G ++
Sbjct: 287  TVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVV 346

Query: 2742 HDEDGKPILHTDGTGYISEDLAM---------KYITNSSSEFAT----FGGTVCQERGAA 2602
            +DED KP++ TDGTG+ISEDLA+         KY+ N +S+         G   + R   
Sbjct: 347  YDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSDRLVGNVELEGKFSELRCLE 406

Query: 2601 ARINEPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKVEKDQALQSEETLNSL 2422
                EPPLLIQCRLF++G AVKGTLLLNRKL P  IQIRPSMIKVE D  L   +T+NS+
Sbjct: 407  THTWEPPLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSV 466

Query: 2421 EIVNISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQNVYSNRRSALRVASLH 2242
            EI   S++P R+YLSKYLIALLSYGGVP E+F+NLL +AL +  +V S++R+ALRV SL 
Sbjct: 467  EINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRV-SLR 525

Query: 2241 DGLYWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLPVSESFYLMGTADPTG 2062
             G        RMI SG+P++EP+L HCL  +            LPV++ FYLMGTADPTG
Sbjct: 526  FGEMDDSIVTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTG 585

Query: 2061 VLNNDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELEDFVGNAKYGVFFSTK 1882
             L +DEVC+ILD GQ+ G+VLVY++PG+HFGDIHV+ A YV+ LE+FVGNAKY +FF  K
Sbjct: 586  TLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIK 645

Query: 1881 GQKSAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPDAEKRNPQKSSNXXXX 1702
            G +S A EMA  DFDGD+YW+SRN +LL++F+A+EPW R  S      + P   S     
Sbjct: 646  GPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELE 705

Query: 1701 XXXXXXEAR---RPSYSMGIAADSWLAYMDRLLSLGDDRAIEKDSLKRKMIKLIDIYYDA 1531
                        + S ++G+AAD+WL +MDRLL+L DD + EK+ LKRKM++L DIYYDA
Sbjct: 706  HELFQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDA 765

Query: 1530 LDAPKSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIYDSVLEFHDEAPPRRQEI 1351
            LDAPKSG KV+V  +L+AE FPH MG+  + SY S+SILG+IYD+V  F  E    + EI
Sbjct: 766  LDAPKSGMKVNVSKELKAEKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQSTK-EI 822

Query: 1350 WKLPCFDV-SISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXXXXDVIKKYKQMLYEAP 1174
            W+LP F++ ++ +  +  WK  YD YR EM   L            +VI KYKQ+LY A 
Sbjct: 823  WRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAA 882

Query: 1173 DMEESAKDTQVIYEEAVAIYHVTYNYA-SMYGVEKCGFAWKVAGSALCSLCAWKSAALNE 997
            + EES ++ + I++EA+AIYHVTY +  +   V  C F W+VAG ALC L   K   L E
Sbjct: 883  EFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVK---LGE 939

Query: 996  KPVTILPSVLRSLLN 952
            K +  +PSVLR + N
Sbjct: 940  KSMVCVPSVLRQVFN 954


>ref|XP_009760372.1| PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X3
            [Nicotiana sylvestris]
          Length = 905

 Score =  791 bits (2043), Expect = 0.0
 Identities = 446/872 (51%), Positives = 565/872 (64%), Gaps = 19/872 (2%)
 Frame = -1

Query: 3510 ISPQLLILNKLEYRKLFLLLSYIKRNKLEAVLTMDDANEVFSMKHLSMPEFEKNIWARYG 3331
            IS QLL L+ LE+RKLFL+L YI R KLE V+ + D  E+  M    M  FE  IW +YG
Sbjct: 34   ISKQLLALSNLEFRKLFLILHYIGRRKLEDVIMLHDVGEILDMTCQPMAHFESYIWTKYG 93

Query: 3330 RKFCEESDRSQYLDWDSGKTHFYYCHVSSDGSYYFKGPYLNSLRTHLQRSLGDENVLIVK 3151
               CE   R QYLDWDSG++HFY+CHV SDGSY FKGPYL + RTHLQ+SLGDEN+L+V+
Sbjct: 94   H-LCENVKRVQYLDWDSGRSHFYHCHVYSDGSYAFKGPYLKAERTHLQQSLGDENILVVR 152

Query: 3150 FSVDGKYSAEKIVEQXXXXXXXXXXXXXFKDERKKVKKNRDWEDKNCTYSDVKSYFVHFD 2971
            F  +     ++IV+              +KD+ KK K + D E+K  T   VK YFV  +
Sbjct: 153  FMEEAPRCPQEIVKNGILIGLRRYHFFVYKDDGKK-KNSMDKEEKIDT---VKCYFVRME 208

Query: 2970 SISTHGNEENYILSRKSVSEARRLFMHIHTLSTLEKYMARFSLILSKTTKLYLDFAAITV 2791
            S++ + N   YIL  K V +AR  FMH+H +S++ KYMARFSLILS T KL +D  ++ +
Sbjct: 209  SLNPYENL-TYILYDKIVHKARCRFMHVHMVSSMAKYMARFSLILSTTVKLQVDLNSVNI 267

Query: 2790 DIIEDIPFQDENGSIIHDEDGKPILHTDGTGYISEDLAMKY--------ITNSSSEFATF 2635
            D IEDI   D+NG  ++DEDGKP++HTDGTGYISEDLA K           N+  E  + 
Sbjct: 268  DRIEDIYCHDKNGRTLYDEDGKPLIHTDGTGYISEDLARKCPQDFFNVKYKNAKLERYSN 327

Query: 2634 G---GTVCQERGAAA-RINEPPLLIQCRLFHDGYAVKGTLLLNRKLEPGRIQIRPSMIKV 2467
            G   G    E G A  +  EPPLL+QCRLF++G AVKGTLL+NRKL    IQIRPSMIKV
Sbjct: 328  GVEPGENSSEVGEAEFQSGEPPLLMQCRLFYNGLAVKGTLLVNRKLPRCTIQIRPSMIKV 387

Query: 2466 EKDQALQSEETLNSLEIVNISHRPPRNYLSKYLIALLSYGGVPQEFFLNLLSNALNETQN 2287
            E D  L      NSLEIV  S +P   YLS+ LIALL+YGGVP E+F ++L+N L ETQ 
Sbjct: 388  EADPKLSRTRMFNSLEIVTPSFKPRNTYLSRTLIALLTYGGVPAEYFFDILNNTLEETQR 447

Query: 2286 VYSNRRSALRVASLHDGLYWGFEAQRMICSGVPLNEPYLQHCLYNVXXXXXXXXXXXXLP 2107
            +YS+  +AL+VA+ H        A  MI   VPL EPYL+ CL ++            LP
Sbjct: 448  LYSDEVTALKVAANHRDRDDASIATGMIMVVVPLCEPYLRCCLSSLAKEERNGLKGGKLP 507

Query: 2106 VSESFYLMGTADPTGVLNNDEVCVILDSGQISGKVLVYRNPGMHFGDIHVMEAIYVKELE 1927
            +S++FYLMGTADPT  LN  EVCVIL+ GQISG+VLVYRNPG+HFGDIH + A+ VK L 
Sbjct: 508  ISDTFYLMGTADPTDTLNPHEVCVILEHGQISGEVLVYRNPGLHFGDIHRLLAVPVKNLG 567

Query: 1926 DFVGNAKYGVFFSTKGQKSAAYEMATGDFDGDLYWISRNPELLKHFKANEPWRRVYSVPD 1747
            D VGNAKYG+FFSTKG +SAA E+A GDFDGD YW+S+NP+LLK++ A+ PW R++S P 
Sbjct: 568  DVVGNAKYGIFFSTKGPRSAATEIANGDFDGDKYWVSQNPQLLKYYHASRPWCRIHSTPK 627

Query: 1746 AEKRNPQ--KSSNXXXXXXXXXXEARRPSYSMGIAADSWLAYMDRLLSLGDDRAIEKD-- 1579
            A  R P+   +            E R P+YSM  A+ SWLA MDRLL L  +   E +  
Sbjct: 628  ALHREPKDFSAEEMEHELFQTFLETRMPNYSMADASSSWLALMDRLLMLRKNNTTENEET 687

Query: 1578 -SLKRKMIKLIDIYYDALDAPKSGKKVDVPNDLRAEMFPHHMGKAPDISYRSSSILGKIY 1402
             ++K K+ +L D+YYDA+DAPKSG KV +P  L+ + FPH + K  +  Y S+S+LG+IY
Sbjct: 688  KTMKEKLFELTDLYYDAIDAPKSGNKVYIPKRLKVDKFPHFLEKKEE--YISTSVLGEIY 745

Query: 1401 DSVLEFHDEAPPRRQEIWKLPCFDVSISEKHVTEWKTNYDCYRREMREVLNXXXXXXXXX 1222
            D V  F  EA     EI KLP F+V I E  +  W+  Y  YR EM + LN         
Sbjct: 746  DRVKSFKAEAAV-AVEIKKLPAFEVKIPETCLRLWEERYKKYRFEMMQALNTSSESKNDL 804

Query: 1221 XXDVIKKYKQMLYEAPDMEESAKDTQVIYEEAVAIYHVTYNYASMYG-VEKCGFAWKVAG 1045
              +V+KKYKQ+LYEAPDMEESA+ T  I+ +A+AIY VTY+YA   G V+KCGFAWKVAG
Sbjct: 805  ADEVVKKYKQLLYEAPDMEESARSTTDIFNDALAIYRVTYDYAKAIGDVKKCGFAWKVAG 864

Query: 1044 SALCSLCAWKSA-ALNEKPVTILPSVLRSLLN 952
            SALC L A   A   N+K + + PS+L  LLN
Sbjct: 865  SALCRLHAELHAKEHNQKIMAVSPSILHKLLN 896


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