BLASTX nr result
ID: Papaver32_contig00035486
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver32_contig00035486
(784 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
XP_011086076.1 PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA ... 50 3e-09
AAY85200.1 RNA polymerase II second largest subunit, partial [Co... 50 4e-09
CAD89687.1 RNA polymerase II, second largest subunit, partial [I... 50 6e-09
XP_015889960.1 PREDICTED: DNA-directed RNA polymerase II subunit... 49 7e-09
AAZ08462.1 RNA polymerase II second largest subunit, partial [Pl... 49 7e-09
AJS14107.1 RNA polymerase II second largest subunit, partial [Ex... 49 7e-09
AAS86825.1 RNA polymerase II second largest subunit, partial [Pl... 49 7e-09
AJS14111.1 RNA polymerase II second largest subunit, partial [Le... 49 7e-09
AFV74910.1 RNA polymerase II second largest subunit, partial [Ch... 49 7e-09
AJS14105.1 RNA polymerase II second largest subunit, partial [Di... 49 7e-09
XP_010108197.1 DNA-directed RNA polymerase II subunit [Morus not... 49 9e-09
XP_008225092.1 PREDICTED: DNA-directed RNA polymerase II subunit... 49 9e-09
XP_007214559.1 hypothetical protein PRUPE_ppa000425mg [Prunus pe... 49 9e-09
CAD92460.1 RNA polymerase II, partial [Escallonia sp. Oxelman 2340] 49 9e-09
CAD88602.1 RNA polymerase II second largest subunit, partial [Al... 49 9e-09
CAD89691.1 RNA polymerase II, second largest subunit, partial [E... 49 9e-09
AJS14121.1 RNA polymerase II second largest subunit, partial [Oc... 49 1e-08
AAT69126.1 RNA polymerase II, partial [Maripa glabra] 49 1e-08
AAT69117.1 RNA polymerase II, partial [Stylisma patens] 49 1e-08
AAT69125.1 RNA polymerase II, partial [Dicranostyles mildbraediana] 49 1e-08
>XP_011086076.1 PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Sesamum indicum]
Length = 1195
Score = 50.4 bits (119), Expect(3) = 3e-09
Identities = 36/98 (36%), Positives = 50/98 (51%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P + D+ Q A+ K C H + RHSE+ I + ++I G+
Sbjct: 880 KTTPISPDDAQGPAARYTK-CDHSTSLRHSETGIVDQVLLITN-----------ADGLRF 927
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 928 VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 965
Score = 32.7 bits (73), Expect(3) = 3e-09
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +C+MG++
Sbjct: 970 ITPDIIVNPHAIPSRMAIGQLIECVMGKV 998
Score = 25.8 bits (55), Expect(3) = 3e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 854 GSYDKLDDDGLAPPG 868
>AAY85200.1 RNA polymerase II second largest subunit, partial [Coriaria
sarmentosa]
Length = 952
Score = 49.7 bits (117), Expect(3) = 4e-09
Identities = 34/98 (34%), Positives = 48/98 (48%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A+D Q A+ + H + RHSE+ I + ++ G+
Sbjct: 772 KTTPIAQDEAQGQAAARYTRSDHSISLRHSETGIVDQVLLTTN-----------ADGLRF 820
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 821 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 858
Score = 33.1 bits (74), Expect(3) = 4e-09
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 863 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 891
Score = 25.8 bits (55), Expect(3) = 4e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 746 GSYDKLDDDGLAPPG 760
>CAD89687.1 RNA polymerase II, second largest subunit, partial [Ilex x
meserveae]
Length = 322
Score = 49.7 bits (117), Expect(3) = 6e-09
Identities = 36/98 (36%), Positives = 50/98 (51%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A+D+ Q AS K+ H + RHSE+ I + ++ G+
Sbjct: 142 KTTPIAQDDAQGQASRYTKRD-HSTSLRHSETGIVDQVLLTTN-----------ADGLRF 189
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 190 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 227
Score = 32.7 bits (73), Expect(3) = 6e-09
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
+TPDII+N H + IGQL +CIMG++
Sbjct: 232 VTPDIIVNPHAIPSRMTIGQLIECIMGKV 260
Score = 25.8 bits (55), Expect(3) = 6e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 116 GSYDKLDDDGLAPPG 130
>XP_015889960.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ziziphus
jujuba]
Length = 1191
Score = 48.9 bits (115), Expect(3) = 7e-09
Identities = 34/98 (34%), Positives = 48/98 (48%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A+D Q A+ + H + RHSE+ I + ++ G+
Sbjct: 875 KTTPIAQDEAQGQAASRYTRRDHSISLRHSETGIVDQVLLTTN-----------ADGLRF 923
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 924 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 961
Score = 33.1 bits (74), Expect(3) = 7e-09
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 966 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 994
Score = 25.8 bits (55), Expect(3) = 7e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 849 GSYDKLDDDGLAPPG 863
>AAZ08462.1 RNA polymerase II second largest subunit, partial [Platanus
orientalis]
Length = 923
Score = 48.9 bits (115), Expect(3) = 7e-09
Identities = 35/98 (35%), Positives = 50/98 (51%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A++ PQ AS ++ H + RHSES + + ++ G+
Sbjct: 744 KTTPIAQEEPQGQASRYTRRD-HSTSLRHSESGMVDQVLLTTN-----------ADGLRF 791
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 792 VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 829
Score = 33.1 bits (74), Expect(3) = 7e-09
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 834 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 862
Score = 25.8 bits (55), Expect(3) = 7e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 718 GSYDKLDDDGLAPPG 732
>AJS14107.1 RNA polymerase II second largest subunit, partial [Exocarpos
cupressiformis]
Length = 569
Score = 48.9 bits (115), Expect(3) = 7e-09
Identities = 36/98 (36%), Positives = 49/98 (50%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A+D Q AS K+ H + RHSE+ I + ++ G+
Sbjct: 355 KTSPIAQDESQGQASRYTKRD-HSTSLRHSETGIVDQVLLTTN-----------ADGLRF 402
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 403 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 440
Score = 33.1 bits (74), Expect(3) = 7e-09
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 445 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 473
Score = 25.8 bits (55), Expect(3) = 7e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 329 GSYDKLDDDGLAPPG 343
>AAS86825.1 RNA polymerase II second largest subunit, partial [Platanus
orientalis]
Length = 536
Score = 48.9 bits (115), Expect(3) = 7e-09
Identities = 35/98 (35%), Positives = 50/98 (51%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A++ PQ AS ++ H + RHSES + + ++ G+
Sbjct: 357 KTTPIAQEEPQGQASRYTRRD-HSTSLRHSESGMVDQVLLTTN-----------ADGLRF 404
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 405 VKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 442
Score = 33.1 bits (74), Expect(3) = 7e-09
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 447 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 475
Score = 25.8 bits (55), Expect(3) = 7e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 331 GSYDKLDDDGLAPPG 345
>AJS14111.1 RNA polymerase II second largest subunit, partial [Lepionurus
sylvestris]
Length = 490
Score = 48.9 bits (115), Expect(3) = 7e-09
Identities = 36/98 (36%), Positives = 49/98 (50%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A+D Q AS K+ H + RHSE+ I + ++ G+
Sbjct: 355 KTSPIAQDESQGQASRYTKRD-HSTSLRHSETGIVDQVLLTTN-----------ADGLRF 402
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 403 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 440
Score = 33.1 bits (74), Expect(3) = 7e-09
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 445 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 473
Score = 25.8 bits (55), Expect(3) = 7e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 329 GSYDKLDDDGLAPPG 343
>AFV74910.1 RNA polymerase II second largest subunit, partial [Champereia
manillana]
Length = 482
Score = 48.9 bits (115), Expect(3) = 7e-09
Identities = 36/98 (36%), Positives = 49/98 (50%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A+D Q AS K+ H + RHSE+ I + ++ G+
Sbjct: 296 KTSPIAQDESQGQASRYTKRD-HSTSLRHSETGIVDQVLLTTN-----------ADGLRF 343
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 344 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 381
Score = 33.1 bits (74), Expect(3) = 7e-09
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 386 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 414
Score = 25.8 bits (55), Expect(3) = 7e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 270 GSYDKLDDDGLAPPG 284
>AJS14105.1 RNA polymerase II second largest subunit, partial [Diogoa zenkeri]
Length = 436
Score = 48.9 bits (115), Expect(3) = 7e-09
Identities = 36/98 (36%), Positives = 49/98 (50%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A+D Q AS K+ H + RHSE+ I + ++ G+
Sbjct: 222 KTSPMAQDESQGQASRYSKRD-HSTSLRHSETGIVDQVLLTTN-----------ADGLRF 269
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 270 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 307
Score = 33.1 bits (74), Expect(3) = 7e-09
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 312 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 340
Score = 25.8 bits (55), Expect(3) = 7e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 196 GSYDKLDDDGLAPPG 210
>XP_010108197.1 DNA-directed RNA polymerase II subunit [Morus notabilis] EXC18122.1
DNA-directed RNA polymerase II subunit [Morus notabilis]
Length = 1193
Score = 48.5 bits (114), Expect(3) = 9e-09
Identities = 33/98 (33%), Positives = 48/98 (48%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A+D Q A+ + H + RHSE+ I + ++ G+
Sbjct: 877 KTTPIAQDEAQGQAASRYTRRDHSISLRHSENGIVDQVLLTTN-----------ADGLRF 925
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R + IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 926 VKVRVRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 963
Score = 33.1 bits (74), Expect(3) = 9e-09
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 968 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 996
Score = 25.8 bits (55), Expect(3) = 9e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 851 GSYDKLDDDGLAPPG 865
>XP_008225092.1 PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Prunus mume]
Length = 1192
Score = 48.9 bits (115), Expect(3) = 9e-09
Identities = 34/98 (34%), Positives = 48/98 (48%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A+D Q A+ + H + RHSE+ I + ++ G+
Sbjct: 876 KTTPMAQDEAQGQAASRYTRRDHSISLRHSETGIVDQVLLTTN-----------ADGLRF 924
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 925 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 962
Score = 32.7 bits (73), Expect(3) = 9e-09
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
+TPDII+N H + IGQL +CIMG++
Sbjct: 967 VTPDIIVNPHAIPSRMTIGQLIECIMGKV 995
Score = 25.8 bits (55), Expect(3) = 9e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 850 GSYDKLDDDGLAPPG 864
>XP_007214559.1 hypothetical protein PRUPE_ppa000425mg [Prunus persica] ONI10423.1
hypothetical protein PRUPE_4G046700 [Prunus persica]
Length = 1192
Score = 48.9 bits (115), Expect(3) = 9e-09
Identities = 34/98 (34%), Positives = 48/98 (48%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A+D Q A+ + H + RHSE+ I + ++ G+
Sbjct: 876 KTTPMAQDEAQGQAASRYTRRDHSISLRHSETGIVDQVLLTTN-----------ADGLRF 924
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 925 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 962
Score = 32.7 bits (73), Expect(3) = 9e-09
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
+TPDII+N H + IGQL +CIMG++
Sbjct: 967 VTPDIIVNPHAIPSRMTIGQLIECIMGKV 995
Score = 25.8 bits (55), Expect(3) = 9e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 850 GSYDKLDDDGLAPPG 864
>CAD92460.1 RNA polymerase II, partial [Escallonia sp. Oxelman 2340]
Length = 543
Score = 48.5 bits (114), Expect(3) = 9e-09
Identities = 35/98 (35%), Positives = 50/98 (51%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A+D+ Q AS K+ H + RHSE+ + + ++ G+
Sbjct: 355 KTTPIAQDDAQGQASRYSKRD-HSTSLRHSETGMVDQVLLTTN-----------ADGLRF 402
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 403 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 440
Score = 33.1 bits (74), Expect(3) = 9e-09
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 445 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 473
Score = 25.8 bits (55), Expect(3) = 9e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 329 GSYDKLDDDGLAPPG 343
>CAD88602.1 RNA polymerase II second largest subunit, partial [Alangium
platanifolium]
Length = 540
Score = 48.5 bits (114), Expect(3) = 9e-09
Identities = 35/98 (35%), Positives = 50/98 (51%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A+D+ Q AS ++ H + RHSE+ I + ++ G+
Sbjct: 361 KTTPIAQDDSQGQASRYSRRD-HSTSLRHSETGIVDQVLLTTN-----------ADGLRF 408
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 409 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 446
Score = 33.1 bits (74), Expect(3) = 9e-09
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 451 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 479
Score = 25.8 bits (55), Expect(3) = 9e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 335 GSYDKLDDDGLAPPG 349
>CAD89691.1 RNA polymerase II, second largest subunit, partial [Escallonia sp.
Oxelman 2340]
Length = 508
Score = 48.5 bits (114), Expect(3) = 9e-09
Identities = 35/98 (35%), Positives = 50/98 (51%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A+D+ Q AS K+ H + RHSE+ + + ++ G+
Sbjct: 298 KTTPIAQDDAQGQASRYSKRD-HSTSLRHSETGMVDQVLLTTN-----------ADGLRF 345
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 346 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 383
Score = 33.1 bits (74), Expect(3) = 9e-09
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 388 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 416
Score = 25.8 bits (55), Expect(3) = 9e-09
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 272 GSYDKLDDDGLAPPG 286
>AJS14121.1 RNA polymerase II second largest subunit, partial [Octoknema sp.
Nickrent 4560]
Length = 389
Score = 48.9 bits (115), Expect(3) = 1e-08
Identities = 36/98 (36%), Positives = 49/98 (50%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P A+D Q AS K+ H + RHSE+ I + ++ G+
Sbjct: 272 KTSPIAQDESQGQASRYTKRD-HSTSLRHSETGIVDQVLLTTN-----------ADGLRF 319
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 320 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 357
Score = 32.7 bits (73), Expect(3) = 1e-08
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGR 479
ITPDII+N H + IGQL +CIMG+
Sbjct: 362 ITPDIIVNPHAIPSRMTIGQLIECIMGK 389
Score = 25.8 bits (55), Expect(3) = 1e-08
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 246 GSYDKLDDDGLAPPG 260
>AAT69126.1 RNA polymerase II, partial [Maripa glabra]
Length = 228
Score = 48.5 bits (114), Expect(3) = 1e-08
Identities = 35/98 (35%), Positives = 50/98 (51%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P ++D+ Q AS K+ H + RHSE+ I + ++ G+
Sbjct: 92 KTTPISQDDAQGQASRYTKRD-HSTSLRHSETGIVDQVLLTTN-----------ADGLRF 139
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 140 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 177
Score = 33.1 bits (74), Expect(3) = 1e-08
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 182 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 210
Score = 25.8 bits (55), Expect(3) = 1e-08
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 66 GSYDKLDDDGLAPPG 80
>AAT69117.1 RNA polymerase II, partial [Stylisma patens]
Length = 223
Score = 48.5 bits (114), Expect(3) = 1e-08
Identities = 35/98 (35%), Positives = 50/98 (51%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P ++D+ Q AS K+ H + RHSE+ I + ++ G+
Sbjct: 89 KTTPISQDDAQGQASRYTKRD-HSTSLRHSETGIVDQVLLTTN-----------ADGLRF 136
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 137 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 174
Score = 33.1 bits (74), Expect(3) = 1e-08
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 179 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 207
Score = 25.8 bits (55), Expect(3) = 1e-08
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 63 GSYDKLDDDGLAPPG 77
>AAT69125.1 RNA polymerase II, partial [Dicranostyles mildbraediana]
Length = 215
Score = 48.5 bits (114), Expect(3) = 1e-08
Identities = 35/98 (35%), Positives = 50/98 (51%)
Frame = +2
Query: 92 KAIPTARDNPQQVASFC*KQCVHGANTRHSESEIAFKYVVIHM**I*N*NN*C*WFGVGV 271
K P ++D+ Q AS K+ H + RHSE+ I + ++ G+
Sbjct: 93 KTTPISQDDAQGQASRYTKRD-HSTSLRHSETGIVDQVLLTTN-----------ADGLRF 140
Query: 272 DESNIRYVGIP*VVFKFSSRHGKNGTVGMTCKQEDIQW 385
+ +R V IP + KFSSRHG+ GTVGMT QED+ W
Sbjct: 141 VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 178
Score = 33.1 bits (74), Expect(3) = 1e-08
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = +3
Query: 399 ITPDIILNSHLFLLK-EIGQLTDCIMGRL 482
ITPDII+N H + IGQL +CIMG++
Sbjct: 183 ITPDIIVNPHAIPSRMTIGQLIECIMGKV 211
Score = 25.8 bits (55), Expect(3) = 1e-08
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 16 GLTDKLDNDGLAPHG 60
G DKLD+DGLAP G
Sbjct: 67 GSYDKLDDDGLAPPG 81