BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver31_contig00041391
         (810 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010476669.1| PREDICTED: mediator of RNA polymerase II tra...    59   5e-06

>ref|XP_010476669.1| PREDICTED: mediator of RNA polymerase II transcription subunit 15a
            isoform X1 [Camelina sativa]
            gi|727607142|ref|XP_010476670.1| PREDICTED: mediator of
            RNA polymerase II transcription subunit 15a isoform X1
            [Camelina sativa]
          Length = 1346

 Score = 58.5 bits (140), Expect = 5e-06
 Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 24/227 (10%)
 Frame = +1

Query: 196  QLQIPQLKQHDSN-----QNNTMID--QKSMQTSLPKAGTLLKPANLPS-----YALSSC 339
            Q  +PQL+ H        Q N +    Q+ +Q S    G+LL P N+       Y     
Sbjct: 512  QQMMPQLQSHHQQLGLQQQPNLLQQDVQQRLQASGQVTGSLLPPQNVVDQQRQLYQTQRT 571

Query: 340  TP-LASSDLPASVDTMSSRDTSIGEQXXXXXXXXXXXXVYIPLLDEMLGRWGCRIQQLPI 516
             P + SS L ++  T S+    +  Q            +Y+P L+E+  R   ++QQ  +
Sbjct: 572  LPEMPSSSLDSTAQTESAN--GVDWQEEVYQKIKSLKEMYLPDLNEIYQRVASKLQQFSL 629

Query: 517  SSENLPSHLKPDEIEYIQKYKTNLEFARNSLQMSVGARGSM----DAVIRWEKKIVGYLN 684
              +++P   + D+ E ++++KT LE  R    +SV     M    D V  +EK+I+G+LN
Sbjct: 630  EQDSIPQQQRSDQFEKLKQFKTMLE--RMIQFLSVPKSNIMPALKDKVPYYEKQIIGFLN 687

Query: 685  LPNVMAAV---QLPGDLLLQLQIPRMK----QHDSNQNNSE*SVSTM 804
            +      V   QLP   +  +Q P+ +    Q   NQ N +    +M
Sbjct: 688  MHKPRKPVQQGQLPQSQMQPMQQPQSQTVQDQSHDNQTNPQMQAMSM 734