BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver31_contig00036163
         (3052 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77295.1| hypothetical protein VITISV_005638 [Vitis vinifera]   174   5e-54
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   196   8e-47
emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]   196   1e-46
gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subc...   193   9e-46
ref|XP_009145096.1| PREDICTED: uncharacterized protein LOC103868...   184   3e-45
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   189   1e-44
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   189   1e-44
emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis ...   188   3e-44
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   187   5e-44
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                  187   5e-44
gb|AAB82754.1| retrofit [Oryza longistaminata]                        187   7e-44
emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]   187   7e-44
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]     181   1e-43
dbj|BAM42646.1| polyprotein [Arabidopsis thaliana]                    185   3e-43
ref|XP_009115279.1| PREDICTED: uncharacterized protein LOC103840...   184   3e-43
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   184   3e-43
dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]                    184   4e-43
dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana]                    184   4e-43
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  184   6e-43
ref|XP_013658442.1| PREDICTED: uncharacterized protein LOC106363...   183   7e-43

>emb|CAN77295.1| hypothetical protein VITISV_005638 [Vitis vinifera]
          Length = 1198

 Score =  174 bits (440), Expect(3) = 5e-54
 Identities = 111/325 (34%), Positives = 160/325 (49%), Gaps = 22/325 (6%)
 Frame = -2

Query: 909  ECQLCKKPGHLAPQCKYKYALSDNNMMQDYYASHDSYGDVYDDYWYPEPEVFVVYQXXXX 730
            +CQLC K GH    C +K+ +S     Q   +S+ S  +  +    P             
Sbjct: 184  QCQLCGKFGHTVQICYHKFDIS----YQSSQSSNTSPSNASNPNSIPA-------MVASS 232

Query: 729  XXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHNDSV 550
                   W  DSGA HH+T  + NL   S Y G D+V +GNG  L+I++ GS  L +DS 
Sbjct: 233  NNLAEDTWYLDSGANHHLTQSVGNLTSSSPYTGIDKVTIGNGKHLSISNTGSHRLLSDSR 292

Query: 549  RFTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGLYH 370
             F +  V HV  I+ NLI V +F  +NN  FEF S+ F +KDL T KVL  G +++GLY 
Sbjct: 293  SFHLKKVFHVHFISANLISVAKFYLDNNALFEFRSNSFFVKDLHTKKVLAQGKLENGLYR 352

Query: 369  MEFTKEQLKQAF--------------XXXXXXXXSWHNKLGHPSYKTLKHVLSSVN---- 244
                  + K AF                       WH++LGH S   +  ++ S N    
Sbjct: 353  FPVLNSK-KVAFVGAINSSTFYSHNSSIFDNKVKLWHHRLGHASTNIVTQIMQSCNVSFE 411

Query: 243  ---EVIDSHFTSTLCSYFQTAKSHALPYPHSSPNNMYGPLDLVYSDVW-VSPLCSVNGYK 76
                 + S   ST+CS  Q AKSH LP  H S +    PL+LV++D+W  + + S +G +
Sbjct: 412  KNKNTVCSTVCSTVCSSCQLAKSHRLP-THLSLSCASKPLELVHTDLWGPASVKSTSGAR 470

Query: 75   YYVSFIDSFSRFTWLYPIAYKYEVL 1
            Y++ F+D +SR+TW YP+  K + L
Sbjct: 471  YFILFLDDYSRYTWFYPLQTKDQAL 495



 Score = 65.9 bits (159), Expect(3) = 5e-54
 Identities = 35/100 (35%), Positives = 62/100 (62%)
 Frame = -3

Query: 1589 SQVIDCIFPHEIWNTLEQNYNSTTKSRLLQLKTDLIGLKKSSDTMLVYFNKARSISH*LA 1410
            +Q+I     H  WN LE+ ++S++++R++QL+ +L   KK S +M+ Y  K +  +  LA
Sbjct: 2    AQIIGHNSSHSAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSLA 61

Query: 1409 QIDRDVSDEDLVIHILQGLPSECNAFKTSICTQQLKNDNL 1290
             I   VS++D V+++L GL S+ NA  T+I    +K+D +
Sbjct: 62   AIGEPVSEQDQVMNLLGGLGSDYNAVVTAI---NIKDDKI 98



 Score = 23.5 bits (49), Expect(3) = 5e-54
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
 Frame = -1

Query: 1192 QPQKSSQNLHQFEHQYSGSNAYPSNTHTYNAYPHQSWHNSSPPANFGRSGNYGLRGNINA 1013
            + Q S +        Y+ S+    +   YN    Q   N +P  +     NY  RG    
Sbjct: 115  EQQSSIEQFSSISANYASSSNSRGSGRRYNGGRGQ---NHTPNIS-----NYTYRGRGRG 166

Query: 1012 GRFKGNFRGGSN---------CDRFG 962
            GR+  N R  SN         C +FG
Sbjct: 167  GRYGQNGRHNSNSSEKPQCQLCGKFG 192


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  196 bits (499), Expect = 8e-47
 Identities = 115/320 (35%), Positives = 165/320 (51%), Gaps = 8/320 (2%)
 Frame = -2

Query: 936  PPLRYNNFIECQLCKKPGHLAPQCKYKYALSDNNMMQD--YYASHDSYGDVYDDYWYPEP 763
            PP   +N  +CQLC K GH    C Y+Y   D + + D  Y  S  SYG   D  WY   
Sbjct: 269  PPGGVDNRPKCQLCYKRGHTVINCWYRY---DEDFVPDEKYAGSATSYG--IDTNWYV-- 321

Query: 762  EVFVVYQXXXXXXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITH 583
                                 D+ AT H+T E+  L +   Y+G DQV   +G+G+ I+H
Sbjct: 322  ---------------------DTSATDHVTGELDKLTVRDRYKGQDQVHTASGAGMEISH 360

Query: 582  VGSSTLHNDSVRFTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVL 403
            +G ST+   +    + N+L+V +  KNL+   + + +N+ Y E YS  F +KDL T K+L
Sbjct: 361  IGHSTVRTPNRDIHLRNILYVPNANKNLVSANRLVSDNSAYMELYSKYFNLKDLATKKLL 420

Query: 402  LTGPVKDGLYHMEFTK-----EQLKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSSVN-E 241
              GP +  LY +  +        LK+AF         WH++LGHP+   ++ V+S  N  
Sbjct: 421  FRGPCRGRLYALPSSSPHERPRPLKEAFGAIKPSFERWHSRLGHPASPIVEKVISKNNLP 480

Query: 240  VIDSHFTSTLCSYFQTAKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSF 61
             +      ++C   Q  KSH LPY  SS  + + PL+L+YSDVW   L SV G +YYVSF
Sbjct: 481  CLAESNKQSVCDACQQGKSHQLPYSRSSSMSSH-PLELIYSDVWGPALTSVGGKQYYVSF 539

Query: 60   IDSFSRFTWLYPIAYKYEVL 1
            I  +S+FTWLY I +K EV+
Sbjct: 540  IGDYSKFTWLYLIKHKSEVI 559



 Score = 78.2 bits (191), Expect = 4e-11
 Identities = 47/171 (27%), Positives = 85/171 (49%)
 Frame = -3

Query: 1865 KLSATNYPLWKSQIAPLLRNYNLLRFVDGSFHCLVKYL*CTSPAGAAIVSASDFVDNDPE 1686
            KLS +N+ LWK+Q+   +R   L   + G+          T    A I + +   D   +
Sbjct: 21   KLSKSNHALWKAQVMAAVRGARLEGHLTGA----------TKTPNALITTTAG--DKGEK 68

Query: 1685 NEFVFNPAYDYWVNQDSALLSWLFSSRTKEIHSQVIDCIFPHEIWNTLEQNYNSTTKSRL 1506
               V NP +D WV  D  +L +L S+  +++ +QV  C      W  LE+ Y+S T++R 
Sbjct: 69   EVTVRNPEFDDWVATDQQVLGFLLSTLARDVLAQVATCGTAAAAWQMLEEMYSSVTRARF 128

Query: 1505 LQLKTDLIGLKKSSDTMLVYFNKARSISH*LAQIDRDVSDEDLVIHILQGL 1353
            +  +  L   KK + ++  Y +K ++++  +    + V D+DL+ +I+ GL
Sbjct: 129  INTRIALSNTKKGTLSINEYVSKMKALADEMTAAGKIVDDDDLISYIIAGL 179


>emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]
          Length = 1172

 Score =  196 bits (497), Expect = 1e-46
 Identities = 98/233 (42%), Positives = 142/233 (60%), Gaps = 4/233 (1%)
 Frame = -2

Query: 708 WVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHNDSVRFTILNV 529
           W+ DSGA+HHITS++SNL++H+ Y G D + + +G+GL ITH GS +LH  + +F++ NV
Sbjct: 233 WLLDSGASHHITSDLSNLSIHAPYNGSDDIMIDDGTGLPITHTGSLSLHTSNAQFSLTNV 292

Query: 528 LHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGLYHMEFTKEQ 349
           L V  + KNLI + +    NN    F    FL+KDL T   LL G  KDG+Y    +   
Sbjct: 293 LCVPGMKKNLISISKLXISNNVSITFLPSSFLVKDLRTGATLLKGKTKDGVYEWLVSSPL 352

Query: 348 LKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSSVNEVIDS----HFTSTLCSYFQTAKSH 181
           L  AF         WH++LGHP++  LKHV+S+ N  + S    HF+   C      KSH
Sbjct: 353 L--AFSSVKTSSSEWHHRLGHPAFPILKHVISTNNLALSSSSLLHFSCNTC---HCNKSH 407

Query: 180 ALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYPI 22
            L + +S+ N+   PL ++YSDVW SP+ S +G+KYYV F+D F+++ W YP+
Sbjct: 408 KLSFSNSTINSS-RPLQILYSDVWTSPIISYDGFKYYVIFVDYFTKYIWFYPL 459


>gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2074

 Score =  193 bits (490), Expect = 9e-46
 Identities = 119/305 (39%), Positives = 158/305 (51%), Gaps = 4/305 (1%)
 Frame = -2

Query: 906  CQLCKKPGHLAPQCKYKYALSDNNMMQD-YYASHDSYGDVYDDYWYPEPEVFVVYQXXXX 730
            CQLC K GH+   C Y+Y   D N + D   A+  SYG   D  WY              
Sbjct: 1242 CQLCGKIGHVVADCWYRY---DENFIPDSKTAAAASYG--VDTNWY-------------- 1282

Query: 729  XXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHNDSV 550
                      D+GAT HIT E+  L  H +Y G +Q+   +G+G+ I HVG S +H    
Sbjct: 1283 ---------MDTGATDHITGELDKLTTHEKYNGKEQIHTASGAGMDIKHVGHSIIHTPIC 1333

Query: 549  RFTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGLYH 370
               + N+LHV    KNLI   +   +N+ + E +   F IKD VT  +LL GP ++GLY 
Sbjct: 1334 NIQLKNILHVPKAEKNLISAHRLAVDNHAFVEVHPRFFAIKDQVTKNLLLRGPCRNGLYP 1393

Query: 369  MEFTK-EQLKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSSVN-EVIDSHFTSTLCSYFQ 196
            +  +     KQ           WH++LGHPS   ++ V+SS N   +     S +C+  Q
Sbjct: 1394 LPTSSLATSKQVLGAIKPTMSRWHSRLGHPSLAIVQKVVSSNNLPCLGDVNESGVCNACQ 1453

Query: 195  TAKSHALPYPHS-SPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYPIA 19
             AKSH LPYP S S +N   PL+LV+SDVW     SV G KYYVSFID FS+FTW+Y + 
Sbjct: 1454 QAKSHQLPYPKSFSVSN--NPLELVFSDVWGPAPTSVGGRKYYVSFIDDFSKFTWIYLLK 1511

Query: 18   YKYEV 4
             K EV
Sbjct: 1512 SKAEV 1516


>ref|XP_009145096.1| PREDICTED: uncharacterized protein LOC103868780 [Brassica rapa]
          Length = 2690

 Score =  184 bits (468), Expect(3) = 3e-45
 Identities = 108/304 (35%), Positives = 158/304 (51%), Gaps = 2/304 (0%)
 Frame = -2

Query: 909  ECQLCKKPGHLAPQCKYKYALSDNNMMQDYYASHDSYGDVYDDYWYPEPEVFVVYQXXXX 730
            +CQLC   GH A +C         + +Q + +S   +       W P   +    Q    
Sbjct: 966  KCQLCGIFGHSAQRC---------SQLQSFGSSSGQFNSPAS--WNPRANLATSSQYNPN 1014

Query: 729  XXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHNDSV 550
                   W+ DSGATHH+T++++NL LH  Y G ++V + +G+GL+I+H+GS+ L   S 
Sbjct: 1015 N------WILDSGATHHLTTDLNNLALHQPYNGGEEVTIADGTGLSISHIGSAILPTPSH 1068

Query: 549  RFTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGLYH 370
             F + +VL+V ++ KNL+ V +    N    EF+   F +KDL T   LL G  K+ LY 
Sbjct: 1069 SFPLRDVLYVPNLHKNLVSVYRLCNANQVSVEFFPAHFQVKDLSTGARLLQGKTKNELYE 1128

Query: 369  MEF--TKEQLKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSSVNEVIDSHFTSTLCSYFQ 196
                 TK     A         SWH++LGHPS   LK ++S  +  I        C    
Sbjct: 1129 WPLPPTKITTYLASPSPKTSLASWHSRLGHPSLPILKTLVSQFSLPISDSIKQFSCVDCL 1188

Query: 195  TAKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYPIAY 16
            T KSH LP+ H++      PL  +YSDVW SP+ S + YKYY+ F+D F+R+TWLYP+  
Sbjct: 1189 TNKSHKLPF-HTNTIKSDKPLQYLYSDVWTSPIVSSDHYKYYLIFVDHFTRYTWLYPLKQ 1247

Query: 15   KYEV 4
            K +V
Sbjct: 1248 KSQV 1251



 Score = 25.0 bits (53), Expect(3) = 3e-45
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = -3

Query: 1532 YNSTTKSRLLQLKTDLIGLKKSSDTMLVYFNKARSISH*LAQIDRDVSDEDLVIHILQGL 1353
            Y   +++   QL+  L   KK   ++  Y     +    +A + + +  ED + ++++GL
Sbjct: 801  YAKPSRAHFKQLRQQLKHWKKEEKSIDDYMLGLTTRFDQIALLGKPLDHEDQIEYVVEGL 860

Query: 1352 PSE 1344
            P E
Sbjct: 861  PEE 863



 Score = 23.9 bits (50), Expect(3) = 3e-45
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -1

Query: 1249 KLVIAESKLDLTTASANVTQPQKSSQNLHQFEHQ--YSGSNAYPSNTHTYNAYPHQSWHN 1076
            K  +  S + ++  +      ++S+ N ++  +Q  Y GSN Y +N +T   +P Q   N
Sbjct: 895  KTAVVASPVPVSANAVTYNGNKQSNHNNNKPNNQQRYGGSNKYNNNRNT--TWPPQ--QN 950

Query: 1075 SSPPANFGRSGNYGLRG 1025
             SP     R  N  LRG
Sbjct: 951  YSP-----RPDNRQLRG 962


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  189 bits (481), Expect = 1e-44
 Identities = 112/312 (35%), Positives = 158/312 (50%), Gaps = 6/312 (1%)
 Frame = -2

Query: 921  NNFIECQLCKKPGHLAPQCKYKYALSDNNMMQD--YYASHDSYGDVYDDYWYPEPEVFVV 748
            +N  +CQLC K GH    C Y+Y   D N + D  +  +  SYG   D  WY        
Sbjct: 274  DNRPKCQLCYKRGHTVCDCWYRY---DENFVPDERFAGTAVSYG--VDTNWY-------- 320

Query: 747  YQXXXXXXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSST 568
                            D+GAT H+T E+  L +  +Y G DQV   +G+G+ I+H+G+S 
Sbjct: 321  ---------------LDTGATDHVTGELDKLTVRDKYHGNDQVHTASGAGMEISHIGNSV 365

Query: 567  LHNDSVRFTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPV 388
            +   S    + +VL+V    KNL+   +   +N  + E Y   F IKDL   + LL G  
Sbjct: 366  VKTPSRNLHLKDVLYVPKANKNLVSAYKLTSDNLAFIELYRKFFFIKDLAMRRTLLRGRC 425

Query: 387  KDGLYHMEFTK---EQLKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSSVN-EVIDSHFT 220
              GLY +        Q+KQ +         WH++LGHPSY  ++ V+ S N   +D    
Sbjct: 426  HKGLYALPSPSSHHHQVKQVYGVTKPSFERWHSRLGHPSYTVVEKVIKSQNLPCLDVSEQ 485

Query: 219  STLCSYFQTAKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRF 40
             ++C   Q AKSH L +P S+  + Y PL+LV+SDVW     SV   KYYVSFID +S+F
Sbjct: 486  VSVCDACQKAKSHQLSFPKSTSESKY-PLELVFSDVWGPAPQSVGNNKYYVSFIDDYSKF 544

Query: 39   TWLYPIAYKYEV 4
            TW+Y + YK EV
Sbjct: 545  TWIYLLKYKSEV 556



 Score = 73.6 bits (179), Expect = 1e-09
 Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 1/193 (0%)
 Frame = -3

Query: 1919 SSMAKYDKHIP*TFKPPS-KLSATNYPLWKSQIAPLLRNYNLLRFVDGSFHCLVKYL*CT 1743
            +S +K +   P   +P S KL  +N+ +WK+QI   +R   L   + G            
Sbjct: 2    ASSSKNNTGNPLVGQPVSEKLGKSNHAVWKAQILATIRGARLEGHLTGD----------- 50

Query: 1742 SPAGAAIVSASDFVDNDPENEFVFNPAYDYWVNQDSALLSWLFSSRTKEIHSQVIDCIFP 1563
                A I+   +      +   V NP Y+ WV  D  +L++L SS TK++  QV  C   
Sbjct: 51   DQPPAPILRRKE----GEKEVVVSNPEYEEWVATDQQVLAYLLSSMTKDLLVQVATCRTA 106

Query: 1562 HEIWNTLEQNYNSTTKSRLLQLKTDLIGLKKSSDTMLVYFNKARSISH*LAQIDRDVSDE 1383
               W+ ++  + S T++R +  +  L  L+K    +  Y  K R+++  L  + + V D+
Sbjct: 107  ASAWSMIQGMFGSMTRARTINTRLSLSTLQKGDMNITTYVGKMRALADDLMAVGKPVDDD 166

Query: 1382 DLVIHILQGLPSE 1344
            +L+ +I  GL  E
Sbjct: 167  ELIGYIFAGLDDE 179


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  189 bits (480), Expect = 1e-44
 Identities = 111/306 (36%), Positives = 165/306 (53%), Gaps = 5/306 (1%)
 Frame = -2

Query: 906  CQLCKKPGHLAPQCKYKYALSDNNMMQDYY----ASHDSYGDVYDDYWYPEPEVFVVYQX 739
            CQ+C K GH A  C Y+Y   D + + D      A+ +SYG   D  WY           
Sbjct: 278  CQVCFKRGHTAADCWYRY---DEDYVPDAKHVAAAAVNSYG--VDTNWYI---------- 322

Query: 738  XXXXXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHN 559
                         D+GAT H+T E+  L +  +Y G +Q+   +G+G+ I+H+G + +HN
Sbjct: 323  -------------DTGATDHVTGELDKLTMKEKYNGGEQIHTASGAGMDISHIGHAIVHN 369

Query: 558  DSVR-FTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKD 382
             + R   + NVL+V    KNL+ V + + +N+ + E + D F +KD +T K LL G    
Sbjct: 370  PNSRNIHLRNVLYVPQAKKNLVSVHRLVNDNSAFLELHRDYFFLKDQITRKTLLKGRSWR 429

Query: 381  GLYHMEFTKEQLKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSSVNEVIDSHFTSTLCSY 202
             LY +  +   LKQA+         WH++LGHPS  T+K V++  +       + ++C+ 
Sbjct: 430  RLYPLPHSS--LKQAYSAIKLSLDRWHHRLGHPSITTVKQVVNKFSLPCSDLSSESVCNA 487

Query: 201  FQTAKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYPI 22
             Q AKSH LP+P SS  + + PL+LV+SDVW     SV   KYYVSFID FS+FTW+Y I
Sbjct: 488  CQQAKSHQLPFPISSSVSKH-PLELVFSDVWGPAPESVGRKKYYVSFIDDFSKFTWIYLI 546

Query: 21   AYKYEV 4
             +K +V
Sbjct: 547  QHKSQV 552



 Score = 78.6 bits (192), Expect = 3e-11
 Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 1/186 (0%)
 Frame = -3

Query: 1865 KLSATNYPLWKSQIAPLLRNYNLLRFVDGSFHCLVKYL*CTSPAGAAIVSASDFVDNDPE 1686
            KL   N+ LWK Q++  +R   L   + G+            P     V+       +P 
Sbjct: 21   KLGKANHALWKVQVSAAVRGARLQGHLTGA---------TKRPPAEIAVTKDGATKKEP- 70

Query: 1685 NEFVFNPAYDYWVNQDSALLSWLFSSRTKEIHSQVIDCIFPHEIWNTLEQNYNSTTKSRL 1506
                 NPA++ W   D  +L +L SS T+E+  QV  C    E+W+ +EQ Y++ T++R 
Sbjct: 71   -----NPAHEDWEATDQQVLGYLLSSLTREVLMQVATCDTAAEVWSAIEQMYSTHTRARA 125

Query: 1505 LQLKTDLIGLKKSSDTMLVYFNKARSISH*LAQI-DRDVSDEDLVIHILQGLPSECNAFK 1329
            +  +  L   KK + +   YF K +S+   +A    R + +E+L+ +I+ GL    +   
Sbjct: 126  INTRFALTNTKKGNMSTPEYFAKMKSLGDEMATAGGRPIDEEELIQYIITGLGEGYSEVV 185

Query: 1328 TSICTQ 1311
            +++C +
Sbjct: 186  SAVCAR 191


>emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis chinensis]
          Length = 646

 Score =  188 bits (477), Expect = 3e-44
 Identities = 111/314 (35%), Positives = 161/314 (51%), Gaps = 11/314 (3%)
 Frame = -2

Query: 909  ECQLCKKPGHLAPQCKYKYALSDNNMMQDYYASHDSYGDVYDDYWYPEPEVFVVYQXXXX 730
            +CQ+C K GH+A +C +++    +N  Q   +  + +     D     P+  +       
Sbjct: 313  QCQICCKIGHVATECWHRF----DNQFQPKASHSNQFSSSAQD-----PQALMA----AP 359

Query: 729  XXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHNDSV 550
                   W  D+GATHH+TS+++NL+LH+ + G D+V VGNG GL + H G S++     
Sbjct: 360  GLLGETPWFLDTGATHHVTSDLANLSLHNPFSGDDKVIVGNGKGLYVLHTGHSSIPTSQG 419

Query: 549  RFTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGLYH 370
               + NVLHV  I  NL+ V +   +NN Y EFY   F +KD  T  +LL G +  GLY 
Sbjct: 420  ALLLKNVLHVPKIAANLVSVQKLCHDNNAYVEFYPSYFAVKDQKTQAILLKGGLDKGLYS 479

Query: 369  M------EFTKEQLKQAF----XXXXXXXXSWHNKLGHPSYKTLKHVLSSVNEVIDSHFT 220
            +         + ++ Q F             WHN+LGHPS   +  VL+  N  + S   
Sbjct: 480  VPSAYSSHAPQARVFQIFSTSSSTSIDSMRLWHNRLGHPSLAIVNKVLNHYNLPVFSLQN 539

Query: 219  STLCSYFQTAKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLC-SVNGYKYYVSFIDSFSR 43
              LC   Q AKSH LP+  +    M  P DLV++D+W SP C SVNG  Y++  ID +SR
Sbjct: 540  KLLCDSCQLAKSHKLPFVRNYSKAM-KPFDLVHADLWGSPSCLSVNGACYFLLLIDDYSR 598

Query: 42   FTWLYPIAYKYEVL 1
            F+WLY +  K E L
Sbjct: 599  FSWLYLLQSKDETL 612



 Score = 80.1 bits (196), Expect = 1e-11
 Identities = 46/185 (24%), Positives = 91/185 (49%)
 Frame = -3

Query: 1865 KLSATNYPLWKSQIAPLLRNYNLLRFVDGSFHCLVKYL*CTSPAGAAIVSASDFVDNDPE 1686
            KL   N+ +W++Q+  ++        ++G+  C  +++  T  A                
Sbjct: 48   KLDRNNFLIWRNQLLNIVVANGYEDILEGTRSCPYQWIAVTDTASTT------------H 95

Query: 1685 NEFVFNPAYDYWVNQDSALLSWLFSSRTKEIHSQVIDCIFPHEIWNTLEQNYNSTTKSRL 1506
               + NP Y  W  Q+  ++SW++SS T+++ +Q++      EIW  L ++Y S +++R+
Sbjct: 96   GSVILNPEYVLWQRQNRLVMSWIYSSLTEQMMTQIMAYNSACEIWTALRESYASASRARI 155

Query: 1505 LQLKTDLIGLKKSSDTMLVYFNKARSISH*LAQIDRDVSDEDLVIHILQGLPSECNAFKT 1326
            ++L+  L   +K   +++ Y  + + I   L  I   VS +D V+ +L GL SE N    
Sbjct: 156  MELRLQLQTTRKGGLSVMDYMLRIQHICDHLRAIGESVSIDDQVMAVLAGLGSEYNPIVA 215

Query: 1325 SICTQ 1311
            SI ++
Sbjct: 216  SITSR 220


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  187 bits (475), Expect = 5e-44
 Identities = 115/307 (37%), Positives = 158/307 (51%), Gaps = 6/307 (1%)
 Frame = -2

Query: 906  CQLCKKPGHLAPQCKYKYALSDNNMMQD---YYASHDSYGDVYDDYWYPEPEVFVVYQXX 736
            CQ+C K GH A  C Y++   D + + D     A+ +SYG   D  WY            
Sbjct: 284  CQVCFKRGHTAADCWYRF---DEDYVADEKLVAAATNSYG--IDTNWYI----------- 327

Query: 735  XXXXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHND 556
                        D+GAT HIT E+  L    +Y G +Q+   +G+G+ I+H+G + +H  
Sbjct: 328  ------------DTGATDHITGELEKLTTKEKYNGGEQIHTASGAGMDISHIGHTIVHTP 375

Query: 555  SVRFTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGL 376
            S    + NVL+V    KNLI   Q   +N+ + E +S  F IKD VT  VLL G  + GL
Sbjct: 376  SRNIHLNNVLYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQVTRDVLLEGKCRHGL 435

Query: 375  YHM--EFTKEQLKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSSVNEVID-SHFTSTLCS 205
            Y +   F +   KQA          WH++LGHPS   +K V+S  N          ++C+
Sbjct: 436  YPIPKSFGRSTNKQALGAAKLSLSRWHSRLGHPSLPIVKQVISRNNLPCSVESVNQSVCN 495

Query: 204  YFQTAKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYP 25
              Q AKSH LPY  S+  + + PL+LV+SDVW     SV   KYYVSFID FS+FTW+Y 
Sbjct: 496  ACQEAKSHQLPYIRSTSVSQF-PLELVFSDVWGPAPESVGRNKYYVSFIDDFSKFTWIYL 554

Query: 24   IAYKYEV 4
            + YK EV
Sbjct: 555  LKYKSEV 561



 Score = 75.1 bits (183), Expect = 4e-10
 Identities = 46/185 (24%), Positives = 86/185 (46%)
 Frame = -3

Query: 1865 KLSATNYPLWKSQIAPLLRNYNLLRFVDGSFHCLVKYL*CTSPAGAAIVSASDFVDNDPE 1686
            KL   N+ LWK+Q++  +    LL +++G            +P     V+        P 
Sbjct: 24   KLGKANHALWKAQVSAAVHGARLLGYLNGDIK---------APNAEISVTIDGKTTTKP- 73

Query: 1685 NEFVFNPAYDYWVNQDSALLSWLFSSRTKEIHSQVIDCIFPHEIWNTLEQNYNSTTKSRL 1506
                 NPA++ W   D  +L +L SS ++++  QV  C    E W  +E  Y++ T++R 
Sbjct: 74   -----NPAFEDWEANDQLVLGYLLSSLSRDVLIQVATCKTAAEAWRNIEALYSTGTRARA 128

Query: 1505 LQLKTDLIGLKKSSDTMLVYFNKARSISH*LAQIDRDVSDEDLVIHILQGLPSECNAFKT 1326
            +  +  L   KK +  +  Y  K R++   +A   R + +E LV +I+ GL  + +   +
Sbjct: 129  VNTRLALTNTKKGTMKIAEYVAKMRALCDEMAAGGRPLDEEGLVQYIIAGLNEDFSPIVS 188

Query: 1325 SICTQ 1311
            ++C +
Sbjct: 189  NLCNK 193


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score =  187 bits (475), Expect = 5e-44
 Identities = 115/307 (37%), Positives = 158/307 (51%), Gaps = 6/307 (1%)
 Frame = -2

Query: 906  CQLCKKPGHLAPQCKYKYALSDNNMMQD---YYASHDSYGDVYDDYWYPEPEVFVVYQXX 736
            CQ+C K GH A  C Y++   D + + D     A+ +SYG   D  WY            
Sbjct: 284  CQVCFKRGHTAADCWYRF---DEDYVADEKLVAAATNSYG--IDTNWYI----------- 327

Query: 735  XXXXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHND 556
                        D+GAT HIT E+  L    +Y G +Q+   +G+G+ I+H+G + +H  
Sbjct: 328  ------------DTGATDHITGELEKLTTKEKYNGGEQIHTASGAGMDISHIGHTIVHTP 375

Query: 555  SVRFTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGL 376
            S    + NVL+V    KNLI   Q   +N+ + E +S  F IKD VT  VLL G  + GL
Sbjct: 376  SRNIHLNNVLYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQVTRDVLLEGKCRHGL 435

Query: 375  YHM--EFTKEQLKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSSVNEVID-SHFTSTLCS 205
            Y +   F +   KQA          WH++LGHPS   +K V+S  N          ++C+
Sbjct: 436  YPIPKSFGRSTNKQALGAAKLSLSRWHSRLGHPSLPIVKQVISRNNLPCSVESVNQSVCN 495

Query: 204  YFQTAKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYP 25
              Q AKSH LPY  S+  + + PL+LV+SDVW     SV   KYYVSFID FS+FTW+Y 
Sbjct: 496  ACQEAKSHQLPYIRSTSVSQF-PLELVFSDVWGPAPESVGRNKYYVSFIDDFSKFTWIYL 554

Query: 24   IAYKYEV 4
            + YK EV
Sbjct: 555  LKYKSEV 561



 Score = 73.6 bits (179), Expect = 1e-09
 Identities = 46/185 (24%), Positives = 85/185 (45%)
 Frame = -3

Query: 1865 KLSATNYPLWKSQIAPLLRNYNLLRFVDGSFHCLVKYL*CTSPAGAAIVSASDFVDNDPE 1686
            KL   N+ LWK+Q++  +    LL +++G            +P     V+        P 
Sbjct: 24   KLGKANHALWKAQVSAAVHGARLLGYLNGDIK---------APNAEISVTIDGKTTTKP- 73

Query: 1685 NEFVFNPAYDYWVNQDSALLSWLFSSRTKEIHSQVIDCIFPHEIWNTLEQNYNSTTKSRL 1506
                 NPA++ W   D  +L +L SS ++++  QV  C    E W  +E  Y++ T++R 
Sbjct: 74   -----NPAFEDWEANDQLVLGYLLSSLSRDVLIQVATCKTAAEAWRNIEALYSTGTRARA 128

Query: 1505 LQLKTDLIGLKKSSDTMLVYFNKARSISH*LAQIDRDVSDEDLVIHILQGLPSECNAFKT 1326
            +  +  L   KK +  +  Y  K R++   +A   R + +E LV +I+ GL  + +   +
Sbjct: 129  VNTRLALTNTKKGTMKIAEYVAKMRALCDEMAAGGRPLDEEGLVQYIIAGLTEDFSPIVS 188

Query: 1325 SICTQ 1311
            + C +
Sbjct: 189  NPCNK 193


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  187 bits (474), Expect = 7e-44
 Identities = 115/307 (37%), Positives = 158/307 (51%), Gaps = 6/307 (1%)
 Frame = -2

Query: 906  CQLCKKPGHLAPQCKYKYALSDNNMMQD---YYASHDSYGDVYDDYWYPEPEVFVVYQXX 736
            CQ+C K GH A  C Y++   D + + D     A+ +SYG   D  WY            
Sbjct: 280  CQVCFKRGHTAADCWYRF---DEDYVADEKLVAAATNSYG--IDTNWYI----------- 323

Query: 735  XXXXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHND 556
                        D+GAT HIT E+  L    +Y G +Q+   +G+G+ I+H+G + +H  
Sbjct: 324  ------------DTGATDHITGELEKLTTKEKYNGGEQIHTASGAGMDISHIGHTIVHTP 371

Query: 555  SVRFTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGL 376
            S    + NVL+V    KNLI   Q   +N+ + E +S  F IKD VT  VLL G  + GL
Sbjct: 372  SRNIHLNNVLYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQVTRDVLLEGKCRHGL 431

Query: 375  YHME--FTKEQLKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSSVNEVID-SHFTSTLCS 205
            Y +   F +   KQA          WH++LGHPS   +K V+S  N          ++C+
Sbjct: 432  YPIPKFFGRSTNKQALGAAKLSLSRWHSRLGHPSLPIVKQVISRNNLPCSVESVNQSVCN 491

Query: 204  YFQTAKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYP 25
              Q AKSH LPY  S+  + + PL+LV+SDVW     SV   KYYVSFID FS+FTW+Y 
Sbjct: 492  ACQEAKSHQLPYIRSTSVSQF-PLELVFSDVWGPAPESVGRNKYYVSFIDDFSKFTWIYL 550

Query: 24   IAYKYEV 4
            + YK EV
Sbjct: 551  LKYKSEV 557



 Score = 78.6 bits (192), Expect = 3e-11
 Identities = 47/185 (25%), Positives = 88/185 (47%)
 Frame = -3

Query: 1865 KLSATNYPLWKSQIAPLLRNYNLLRFVDGSFHCLVKYL*CTSPAGAAIVSASDFVDNDPE 1686
            KL   N+ LWK+Q++  +R   LL +++G            +P     V+        P 
Sbjct: 24   KLGKANHALWKAQVSAAVRGARLLGYLNGDIK---------APDAELSVTIDGKTTTKP- 73

Query: 1685 NEFVFNPAYDYWVNQDSALLSWLFSSRTKEIHSQVIDCIFPHEIWNTLEQNYNSTTKSRL 1506
                 NPA++ W   D  +L +L SS ++++  QV  C    E W ++E  Y++ T++R 
Sbjct: 74   -----NPAFEDWEANDQLVLGYLLSSLSRDVLIQVATCKTAAEAWRSIEALYSTGTRARA 128

Query: 1505 LQLKTDLIGLKKSSDTMLVYFNKARSISH*LAQIDRDVSDEDLVIHILQGLPSECNAFKT 1326
            +  +  L   KK +  +  Y  K R++   +A     + +EDLV +I+ GL  + +   +
Sbjct: 129  VNTRLALTNTKKGTMKIAEYVAKMRALGDEMAAGGHPLDEEDLVQYIIAGLNEDFSPIVS 188

Query: 1325 SICTQ 1311
            ++C +
Sbjct: 189  NLCNK 193


>emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]
          Length = 590

 Score =  187 bits (474), Expect = 7e-44
 Identities = 99/237 (41%), Positives = 142/237 (59%), Gaps = 2/237 (0%)
 Frame = -2

Query: 708  WVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHNDSVRFTILNV 529
            W+ DS A+H+ITS++SNL  HSEY G D+V +G+GSGL ITH GS TL   + +F + + 
Sbjct: 297  WLIDSAASHNITSQVSNLQFHSEYDGTDEVIIGDGSGLPITHSGSLTLSFPNRKFQVEDT 356

Query: 528  LHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGLYHMEFTKEQ 349
            L V +I KNLI V  F K+NN   EF+   FL+KD  T ++LL GP ++G+Y M  +   
Sbjct: 357  LCVPTINKNLISVHHFTKQNNVILEFHPTYFLVKDRRTGEILLQGPCENGVYPMPSSPAA 416

Query: 348  LKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSSVNEVIDSHFT-STLCSYFQTAKSHALP 172
               AF         WH +LGHPS+K +  ++SS +    S  + S  C      K+H LP
Sbjct: 417  TPIAFVHERTSVTGWHQRLGHPSFKVVTRLISSFSLPTTSCLSGSNNCHSCSINKAHQLP 476

Query: 171  YPHSSPNNMYGPLDLVYSDVW-VSPLCSVNGYKYYVSFIDSFSRFTWLYPIAYKYEV 4
            + H        P DL+Y+DVW  SP  S+NG++YYV F+D F+++ W +P+  K +V
Sbjct: 477  F-HKHGLTSTTPFDLLYTDVWGPSPTPSLNGHRYYVIFVDHFTKYVWFFPLHQKSDV 532



 Score = 82.0 bits (201), Expect = 3e-12
 Identities = 47/175 (26%), Positives = 88/175 (50%)
 Frame = -3

Query: 1868 SKLSATNYPLWKSQIAPLLRNYNLLRFVDGSFHCLVKYL*CTSPAGAAIVSASDFVDNDP 1689
            ++L+ TN+P W +Q   LL  YNL  +VDG+  C         P   +  +A+       
Sbjct: 21   ARLTPTNFPSWNAQFESLLLGYNLFGYVDGTHTC--------PPLPTSTDAAA------- 65

Query: 1688 ENEFVFNPAYDYWVNQDSALLSWLFSSRTKEIHSQVIDCIFPHEIWNTLEQNYNSTTKSR 1509
                    A+  W  QD  +LS + +S +  +   +      H+ W  L + Y S +++R
Sbjct: 66   ------TTAHHLWFRQDKLILSAILTSVSPAVIPLIATSKTSHQAWTKLTKLYASRSRTR 119

Query: 1508 LLQLKTDLIGLKKSSDTMLVYFNKARSISH*LAQIDRDVSDEDLVIHILQGLPSE 1344
            ++QLK DL  +++ + ++  Y +  ++I+  LA ID  +S +D+ +++L GL S+
Sbjct: 120  VMQLKEDLTLMQRGNRSITEYLHSVKTIADELALIDAPLSQDDITLYVLHGLGSD 174


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score =  181 bits (459), Expect(2) = 1e-43
 Identities = 108/303 (35%), Positives = 153/303 (50%), Gaps = 2/303 (0%)
 Frame = -2

Query: 906  CQLCKKPGHLAPQCKYKYALSDNNMMQDY-YASHDSYGDVYDDYWYPEPEVFVVYQXXXX 730
            CQLC K GH+   C + Y   D++ + D   A+  SYG   D  WY              
Sbjct: 276  CQLCSKVGHVVADCWHCY---DDSFVPDARVAAAASYG--VDSNWYV------------- 317

Query: 729  XXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHNDSV 550
                      D+GAT HIT+E+  L     Y G +Q+   +GSG+ I H+G ST+   + 
Sbjct: 318  ----------DTGATDHITNELEKLTTRDRYNGKEQIHTASGSGMDIKHIGQSTIRTPTR 367

Query: 549  RFTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGLYH 370
               + N+LHV    KNLI   +   +N+ + E +   F IKD +T   LL GP  +GLY 
Sbjct: 368  NLYLRNILHVPRTKKNLISAHRLAVDNHAFVEVHPRFFAIKDQITKNTLLRGPCCNGLYP 427

Query: 369  MEFTKEQLKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSSVN-EVIDSHFTSTLCSYFQT 193
            +  +    KQ           WH++LGHPS++ ++ V+S  N   +       +C   Q 
Sbjct: 428  LPASTSSSKQVLGAIKPTVSIWHSRLGHPSWQIVQKVVSHNNLPCLGESKELGVCDACQK 487

Query: 192  AKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYPIAYK 13
             KSH LP+  S+  + + PL+LV+SDVW     SV G KYYVSFID FS+FTW+Y +  K
Sbjct: 488  GKSHQLPFLKSTSASNF-PLELVFSDVWGPAPDSVGGRKYYVSFIDDFSKFTWIYLLKQK 546

Query: 12   YEV 4
             EV
Sbjct: 547  SEV 549



 Score = 26.6 bits (57), Expect(2) = 1e-43
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 1081 HNSSPPANFGRSGNYGLRGNINAGRFKGNFRGGSNCDRFG 962
            ++S   AN GR+   G   N   G F    RGG   DR G
Sbjct: 221  YSSVNSANHGRNNGGGGNFNNGGGYFSNRGRGGGRGDRGG 260



 Score = 67.4 bits (163), Expect = 8e-08
 Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 3/185 (1%)
 Frame = -3

Query: 1865 KLSATNYPLWKSQIAPLLRNYNLLRFVDGSFHCLVKYL*CTSPAGAAIVSASDFVDNDPE 1686
            KL+  N+ LWK+ I P++    +  ++ G+                 + SA   V    +
Sbjct: 20   KLTKNNFSLWKTHILPVICGARMEGYLTGA---------------TQVPSAEIEVKEGEK 64

Query: 1685 NEF---VFNPAYDYWVNQDSALLSWLFSSRTKEIHSQVIDCIFPHEIWNTLEQNYNSTTK 1515
             E    V NPAY+ W+  D  +L +L SS +KEI  QV +       W  +    ++ ++
Sbjct: 65   GEITKKVSNPAYEAWIAADQQVLGFLLSSISKEILIQVANVDTAAHAWKMIVGLLSTQSR 124

Query: 1514 SRLLQLKTDLIGLKKSSDTMLVYFNKARSISH*LAQIDRDVSDEDLVIHILQGLPSECNA 1335
            +R L  +  L   +K   ++  Y +K ++++  +A   + + DE+   +IL GL S+   
Sbjct: 125  ARALNTRIALATTQKGESSVSDYISKMKTLADEMASAGKPLDDEEFTSYILAGLDSDYEQ 184

Query: 1334 FKTSI 1320
              +SI
Sbjct: 185  VVSSI 189


>dbj|BAM42646.1| polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score =  185 bits (469), Expect = 3e-43
 Identities = 109/304 (35%), Positives = 153/304 (50%), Gaps = 3/304 (0%)
 Frame = -2

Query: 906  CQLCKKPGHLAPQCKYKYALSDNNMMQDYYASHDSYGDVYDDYWYPEPEVFVVYQXXXXX 727
            CQ+C   GH A +C   +        Q   +            W P   + V        
Sbjct: 277  CQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTP--------WQPRANLAV------NS 322

Query: 726  XXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHNDSVR 547
                 +W+ DSGATHHITS+ +NL+LH  Y G D V + +GS + ITH GS++L   S  
Sbjct: 323  PYNANNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRS 382

Query: 546  FTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGLYHM 367
              +  VL+V +I KNLI V +    N    EF+   F +KDL T   LL G  KD LY  
Sbjct: 383  LDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEW 442

Query: 366  EFTKEQLKQAF--XXXXXXXXSWHNKLGHPSYKTLKHVLSSVN-EVIDSHFTSTLCSYFQ 196
                 Q    F          SWH++LGHPS   L  V+S+ +  V++       CS   
Sbjct: 443  PIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCF 502

Query: 195  TAKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYPIAY 16
              KSH +P+ +S+  +   PL+ +YSDVW SP+ S++ Y+YYV F+D F+R+TWLYP+  
Sbjct: 503  INKSHKVPFSNSTITSS-KPLEYIYSDVWSSPILSIDNYRYYVIFVDHFTRYTWLYPLKQ 561

Query: 15   KYEV 4
            K +V
Sbjct: 562  KSQV 565


>ref|XP_009115279.1| PREDICTED: uncharacterized protein LOC103840525 [Brassica rapa]
          Length = 585

 Score =  184 bits (468), Expect = 3e-43
 Identities = 109/303 (35%), Positives = 155/303 (51%), Gaps = 1/303 (0%)
 Frame = -2

Query: 909  ECQLCKKPGHLAPQCKYKYALSDNNMMQDYYASHDSYGDVYDDYWYPEPEVFVVYQXXXX 730
            +CQ C   GH A +C     +   N          S      +   PE            
Sbjct: 282  KCQACGVQGHSAQRCPMFRVIPTQNAPSSGQQWRPSAHQAGLNTMNPE------------ 329

Query: 729  XXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHNDSV 550
                   W+ DSGAT+H+TS+  NL+LH+ Y G D + +GNGS L ITH GS   H  + 
Sbjct: 330  ------GWLMDSGATNHVTSDFHNLSLHNPYTGSDSIVIGNGSALPITHTGSFRSHTPTR 383

Query: 549  RFTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGLYH 370
             +T  NVL V SI KNLI V QF  +N    EF+   F +K L T   LL G  KDG Y 
Sbjct: 384  DYTFNNVLCVPSIHKNLISVHQFCNDNQTSVEFFPSMFQVKALDTGATLLKGLAKDGSYE 443

Query: 369  MEFTKEQLKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSS-VNEVIDSHFTSTLCSYFQT 193
              ++      AF         WH++LGHP++  LK + SS +  V+ +   ST C+    
Sbjct: 444  WPYS---TLGAFSVSKSSLSHWHHRLGHPAFPILKTITSSFLPLVLCNALESTPCNSCLL 500

Query: 192  AKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYPIAYK 13
             KSH LP+  ++ ++ + PL +++SDVW SP+ SV+GYKYY+  +D F+R+ W +P+  K
Sbjct: 501  NKSHKLPFSTTTISSTH-PLHVLFSDVWTSPVLSVDGYKYYLLIVDHFTRYMWFFPLKLK 559

Query: 12   YEV 4
             +V
Sbjct: 560  SQV 562



 Score = 70.1 bits (170), Expect = 1e-08
 Identities = 50/175 (28%), Positives = 78/175 (44%)
 Frame = -3

Query: 1868 SKLSATNYPLWKSQIAPLLRNYNLLRFVDGSFHCLVKYL*CTSPAGAAIVSASDFVDNDP 1689
            +KL+ TNY +W  +I  LL  + L  F       LV +    +P           ++ D 
Sbjct: 34   TKLTNTNYLMWSKKIHALLEGHELHTF-------LVAHDSIPTPT----------IETDG 76

Query: 1688 ENEFVFNPAYDYWVNQDSALLSWLFSSRTKEIHSQVIDCIFPHEIWNTLEQNYNSTTKSR 1509
              E   NPAY  W  QD  L S +  + +  I   V      HE+W+TL   + + T+  
Sbjct: 77   ATEP--NPAYITWRRQDRLLYSAVLGALSLPIQPLVASATTTHEVWSTLASAFGTPTRGY 134

Query: 1508 LLQLKTDLIGLKKSSDTMLVYFNKARSISH*LAQIDRDVSDEDLVIHILQGLPSE 1344
            + QLK  +    K S T+  Y    ++ +  LA + + +  EDL+  +L GLP E
Sbjct: 135  IRQLKFQIKSCTKGSTTISEYLRTMKTKADELALLGKPMDPEDLIEQVLAGLPEE 189


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  184 bits (468), Expect = 3e-43
 Identities = 108/307 (35%), Positives = 163/307 (53%), Gaps = 6/307 (1%)
 Frame = -2

Query: 906  CQLCKKPGHLAPQCKYKYALSDNNMMQDY----YASHDSYGDVYDDYWYPEPEVFVVYQX 739
            CQ+C + GH A  C Y++   D N + D      A+H +  +V                 
Sbjct: 282  CQVCSRVGHTALNCWYRF---DENYVPDQRSANSAAHQNGSNV----------------- 321

Query: 738  XXXXXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHN 559
                      W  D+GAT HIT ++  L +H +Y G DQ+   NG+G+TI+++G++ +  
Sbjct: 322  ---------PWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTGMTISNIGNAIVPT 372

Query: 558  DSVRFTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDG 379
             S    + +VLHV S  KNLI V +   +N+ + EF+S  FLIKD  T  VLL G  +DG
Sbjct: 373  SSRSLHLRSVLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDG 432

Query: 378  LYHMEFTKE-QLKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSSVN-EVIDSHFTSTLCS 205
            LY +    + +LK  F         WH +LGHPS   +  V+S+ N   + ++ T+++C 
Sbjct: 433  LYPLPPHPDLRLKHNFSSTRVPLEHWHKRLGHPSRDIVHRVISNNNLPCLSNNSTTSVCD 492

Query: 204  YFQTAKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYP 25
                AK+H LPY  S   +   PL L++SDV+   + S   YKYYVSFID +S+FTW+Y 
Sbjct: 493  ACLQAKAHQLPYTISMSQSS-APLMLIFSDVFGPAIDSFGRYKYYVSFIDDYSKFTWIYL 551

Query: 24   IAYKYEV 4
            + +K +V
Sbjct: 552  LRHKSDV 558



 Score = 93.2 bits (230), Expect = 1e-15
 Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 2/193 (1%)
 Frame = -3

Query: 1892 IP*TFKPP--SKLSATNYPLWKSQIAPLLRNYNLLRFVDGSFHCLVKYL*CTSPAGAAIV 1719
            IP +F  P   KL+  NY LWK+Q+ P +R   L   + G   C  K           I 
Sbjct: 12   IPTSFAIPVSEKLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPK----------TIS 61

Query: 1718 SASDFVDNDPENEFVFNPAYDYWVNQDSALLSWLFSSRTKEIHSQVIDCIFPHEIWNTLE 1539
             ASD          V NPAY  W+ +D A+L +L SS ++E+ S V++C     +W TL 
Sbjct: 62   DASD------RTVTVANPAYGRWIARDQAVLGYLLSSLSREVLSSVVNCSTSASVWTTLS 115

Query: 1538 QNYNSTTKSRLLQLKTDLIGLKKSSDTMLVYFNKARSISH*LAQIDRDVSDEDLVIHILQ 1359
            + Y+S +++R +  +  L   KK + ++  YF K R  +  L    + + DE+ V  +L 
Sbjct: 116  EMYSSHSRARKVNTRIALATTKKGASSVAEYFAKMRGFADELGAAGKPLDDEEFVSFLLT 175

Query: 1358 GLPSECNAFKTSI 1320
            GL  + N   T++
Sbjct: 176  GLDEDFNPLVTAV 188


>dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score =  184 bits (467), Expect = 4e-43
 Identities = 108/304 (35%), Positives = 152/304 (50%), Gaps = 3/304 (0%)
 Frame = -2

Query: 906  CQLCKKPGHLAPQCKYKYALSDNNMMQDYYASHDSYGDVYDDYWYPEPEVFVVYQXXXXX 727
            CQ+C   GH A +C   +        Q   +            W P   + V        
Sbjct: 277  CQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTP--------WQPRANLAV------NS 322

Query: 726  XXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHNDSVR 547
                 +W+ DSGATHHITS+ +NL+ H  Y G D V + +GS + ITH GS++L   S  
Sbjct: 323  PYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRS 382

Query: 546  FTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGLYHM 367
              +  VL+V +I KNLI V +    N    EF+   F +KDL T   LL G  KD LY  
Sbjct: 383  LDLNKVLYVPNINKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEW 442

Query: 366  EFTKEQLKQAF--XXXXXXXXSWHNKLGHPSYKTLKHVLSSVN-EVIDSHFTSTLCSYFQ 196
                 Q    F          SWH++LGHPS   L  V+S+ +  V++       CS   
Sbjct: 443  PIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCF 502

Query: 195  TAKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYPIAY 16
              KSH +P+ +S+  +   PL+ +YSDVW SP+ S++ Y+YYV F+D F+R+TWLYP+  
Sbjct: 503  INKSHKVPFSNSTITSS-KPLEYIYSDVWSSPILSIDNYRYYVIFVDHFTRYTWLYPLKQ 561

Query: 15   KYEV 4
            K +V
Sbjct: 562  KSQV 565


>dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana]
          Length = 1475

 Score =  184 bits (467), Expect = 4e-43
 Identities = 108/304 (35%), Positives = 152/304 (50%), Gaps = 3/304 (0%)
 Frame = -2

Query: 906  CQLCKKPGHLAPQCKYKYALSDNNMMQDYYASHDSYGDVYDDYWYPEPEVFVVYQXXXXX 727
            CQ+C   GH A +C   +        Q   +            W P   + V        
Sbjct: 277  CQICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTP--------WQPRANLAV------NS 322

Query: 726  XXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHNDSVR 547
                 +W+ DSGATHHITS+ +NL+ H  Y G D V + +GS + ITH GS++L   S  
Sbjct: 323  PYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRS 382

Query: 546  FTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGLYHM 367
              +  VL+V +I KNLI V +    N    EF+   F +KDL T   LL G  KD LY  
Sbjct: 383  LDLNKVLYVPNINKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEW 442

Query: 366  EFTKEQLKQAF--XXXXXXXXSWHNKLGHPSYKTLKHVLSSVN-EVIDSHFTSTLCSYFQ 196
                 Q    F          SWH++LGHPS   L  V+S+ +  V++       CS   
Sbjct: 443  PIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCF 502

Query: 195  TAKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYPIAY 16
              KSH +P+ +S+  +   PL+ +YSDVW SP+ S++ Y+YYV F+D F+R+TWLYP+  
Sbjct: 503  INKSHKVPFSNSTITSS-KPLEYIYSDVWSSPILSIDNYRYYVIFVDHFTRYTWLYPLKQ 561

Query: 15   KYEV 4
            K +V
Sbjct: 562  KSQV 565


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  184 bits (466), Expect = 6e-43
 Identities = 113/307 (36%), Positives = 158/307 (51%), Gaps = 6/307 (1%)
 Frame = -2

Query: 906  CQLCKKPGHLAPQCKYKYALSDNNMMQDYY---ASHDSYGDVYDDYWYPEPEVFVVYQXX 736
            CQ+C K GH A  C Y++   D + + D     A+ +SYG   D  WY            
Sbjct: 281  CQVCFKRGHTAADCWYRF---DEDYVADEKLAAAATNSYG--IDTNWYI----------- 324

Query: 735  XXXXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHND 556
                        D+GAT HIT E+  L    +Y G +Q+   +G+G+ I+H+G +T+H  
Sbjct: 325  ------------DTGATDHITGELEKLTTKEKYNGNEQIHTASGAGMDISHIGHTTVHTP 372

Query: 555  SVRFTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGL 376
            S    + NVL+V    K+LI   Q   +N+ + E +S  F IKD VT  +LL G  + GL
Sbjct: 373  SRNIHLNNVLYVPQAKKSLISASQLATDNSAFLELHSKFFSIKDQVTKDILLEGRCRHGL 432

Query: 375  YHM--EFTKEQLKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSSVNEVID-SHFTSTLCS 205
            Y +   F +   KQA          WH++LGHPS   +K V+S  N          ++C+
Sbjct: 433  YPIPKSFGRTTSKQALGTTKLSLSRWHSRLGHPSLPIVKQVISKNNLPCSVESVNQSVCN 492

Query: 204  YFQTAKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYP 25
              Q AKS  LPY  S+  + + PL+LV+SDVW     SV   KYYVSFID FS+FTW+Y 
Sbjct: 493  ACQEAKSRQLPYVRSTSVSQF-PLELVFSDVWGPAPESVGRNKYYVSFIDDFSKFTWIYL 551

Query: 24   IAYKYEV 4
            + YK EV
Sbjct: 552  LKYKSEV 558



 Score = 73.9 bits (180), Expect = 8e-10
 Identities = 47/185 (25%), Positives = 86/185 (46%)
 Frame = -3

Query: 1865 KLSATNYPLWKSQIAPLLRNYNLLRFVDGSFHCLVKYL*CTSPAGAAIVSASDFVDNDPE 1686
            KL   N+ LWK+Q++  +R   L   + G+           +P     V+        P 
Sbjct: 23   KLGKGNHALWKAQVSAAVRGARLQGHLTGAVK---------APDAELSVTIDGKTTTKP- 72

Query: 1685 NEFVFNPAYDYWVNQDSALLSWLFSSRTKEIHSQVIDCIFPHEIWNTLEQNYNSTTKSRL 1506
                 NPA++ W   D  +L +L SS ++++  QV  C    E W  +E  Y++ T++R 
Sbjct: 73   -----NPAFEDWDANDQLVLGYLLSSLSRDVLIQVATCKTAAEAWRAIEGLYSTGTRARA 127

Query: 1505 LQLKTDLIGLKKSSDTMLVYFNKARSISH*LAQIDRDVSDEDLVIHILQGLPSECNAFKT 1326
            +  +  L   KK +  +  Y  K R++   +A   R + +EDLV +I+ GL  + +   +
Sbjct: 128  VNTRLALTNTKKGTMKIAEYVAKMRALGDEMAAGGRPLDEEDLVQYIIAGLNEDFSPIVS 187

Query: 1325 SICTQ 1311
            ++C +
Sbjct: 188  NLCNK 192


>ref|XP_013658442.1| PREDICTED: uncharacterized protein LOC106363199 [Brassica napus]
          Length = 585

 Score =  183 bits (465), Expect = 7e-43
 Identities = 109/303 (35%), Positives = 154/303 (50%), Gaps = 1/303 (0%)
 Frame = -2

Query: 909  ECQLCKKPGHLAPQCKYKYALSDNNMMQDYYASHDSYGDVYDDYWYPEPEVFVVYQXXXX 730
            +CQ C   GH A +C     +   N          S      +   PE            
Sbjct: 282  KCQACGVQGHSAQRCPMFRVIPTQNAPSSGQQWRPSAHQAGLNTMNPE------------ 329

Query: 729  XXXXXXDWVPDSGATHHITSEMSNLNLHSEYQGFDQVKVGNGSGLTITHVGSSTLHNDSV 550
                   W+ DSGAT+H+TS+  NL+LH+ Y G D + +GNGS L ITH GS   H  + 
Sbjct: 330  ------GWLMDSGATNHVTSDFHNLSLHNPYTGSDSIVIGNGSALPITHTGSFRSHTPTR 383

Query: 549  RFTILNVLHVSSITKNLIRVLQFIKENNCYFEFYSDKFLIKDLVTHKVLLTGPVKDGLYH 370
             +T  NVL V SI KNLI V QF  +N    EF+   F +K L T   LL G  KDG Y 
Sbjct: 384  DYTFNNVLCVPSIHKNLISVHQFCNDNQTSVEFFPSMFQVKALDTGATLLKGLAKDGSYE 443

Query: 369  MEFTKEQLKQAFXXXXXXXXSWHNKLGHPSYKTLKHVLSS-VNEVIDSHFTSTLCSYFQT 193
              ++      AF         WH +LGHP++  LK + SS +  V+ +   ST C+    
Sbjct: 444  WPYS---TLGAFSVSKSSLSHWHYRLGHPAFPILKTITSSFLPLVLCNALESTPCNSCLL 500

Query: 192  AKSHALPYPHSSPNNMYGPLDLVYSDVWVSPLCSVNGYKYYVSFIDSFSRFTWLYPIAYK 13
             KSH LP+  ++ ++ + PL +++SDVW SP+ SV+GYKYY+  +D F+R+ W +P+  K
Sbjct: 501  NKSHKLPFSTTTISSTH-PLHVLFSDVWTSPVLSVDGYKYYLLIVDHFTRYMWFFPLKLK 559

Query: 12   YEV 4
             +V
Sbjct: 560  SQV 562



 Score = 70.9 bits (172), Expect = 7e-09
 Identities = 50/175 (28%), Positives = 78/175 (44%)
 Frame = -3

Query: 1868 SKLSATNYPLWKSQIAPLLRNYNLLRFVDGSFHCLVKYL*CTSPAGAAIVSASDFVDNDP 1689
            +KL+ TNY +W  +I  LL  + L  F       LV +    +P           ++ D 
Sbjct: 34   TKLTNTNYLMWSKKIHALLEGHELHTF-------LVAHDSIPTPT----------IETDG 76

Query: 1688 ENEFVFNPAYDYWVNQDSALLSWLFSSRTKEIHSQVIDCIFPHEIWNTLEQNYNSTTKSR 1509
              E   NPAY  W  QD  L S +  + +  I   V      HE+W+TL   + + T+  
Sbjct: 77   ATEP--NPAYITWRRQDRLLYSAVLGALSLPIQPLVASATTTHEVWSTLASAFGTPTRGH 134

Query: 1508 LLQLKTDLIGLKKSSDTMLVYFNKARSISH*LAQIDRDVSDEDLVIHILQGLPSE 1344
            + QLK  +    K S T+  Y    ++ +  LA + + +  EDL+  +L GLP E
Sbjct: 135  IRQLKFQIKSCTKGSTTISEYLRTMKTKADELALLGKPMDPEDLIEQVLAGLPEE 189