BLASTX nr result
ID: Papaver31_contig00034716
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver31_contig00034716
(531 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACJ63311.1| RNA polymerase III large subunit [Papaver orientale] 87 3e-36
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 79 5e-34
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 79 5e-34
ref|XP_010033188.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 77 6e-34
gb|KCW52757.1| hypothetical protein EUGRSUZ_J02108 [Eucalyptus g... 77 6e-34
gb|KCW52758.1| hypothetical protein EUGRSUZ_J02108 [Eucalyptus g... 77 6e-34
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu... 79 4e-33
ref|XP_010265589.1| PREDICTED: DNA-directed RNA polymerase III s... 79 7e-33
ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutr... 78 1e-32
gb|KNA22334.1| hypothetical protein SOVF_034890 [Spinacia oleracea] 82 1e-32
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 75 1e-32
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr... 75 1e-32
gb|KDO73040.1| hypothetical protein CISIN_1g000828mg [Citrus sin... 75 1e-32
gb|AAS79697.1| RNA polymerase III large subunit [Ginkgo biloba] 79 2e-32
ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thali... 77 2e-32
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar... 77 2e-32
ref|XP_010455868.1| PREDICTED: DNA-directed RNA polymerase III s... 77 2e-32
ref|XP_010483650.1| PREDICTED: DNA-directed RNA polymerase III s... 77 2e-32
ref|XP_010443797.1| PREDICTED: DNA-directed RNA polymerase III s... 77 2e-32
ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Caps... 77 2e-32
>gb|ACJ63311.1| RNA polymerase III large subunit [Papaver orientale]
Length = 554
Score = 86.7 bits (213), Expect(3) = 3e-36
Identities = 44/59 (74%), Positives = 46/59 (77%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A +GF DR+LPHFPRNS PDAKGFVENSF TGL ATE FFHT M G EGL DTAV
Sbjct: 297 GRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYTGLTATEFFFHT-MGGREGLVDTAV 354
Score = 59.3 bits (142), Expect(3) = 3e-36
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NI+Q+IAC
Sbjct: 262 LHWRNSPLIMSQCGSKGSPSNITQMIAC 289
Score = 53.1 bits (126), Expect(3) = 3e-36
Identities = 28/40 (70%), Positives = 29/40 (72%), Gaps = 10/40 (25%)
Frame = -1
Query: 90 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
GYMSRRLIKALEDLSI YD+ QFLYGDDGMD
Sbjct: 360 GYMSRRLIKALEDLSIHYDSTVRSASGGVVQFLYGDDGMD 399
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 79.0 bits (193), Expect(3) = 5e-34
Identities = 41/59 (69%), Positives = 42/59 (71%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A GF DR LPHFPR S PDAKGFV +SF TGL ATE FFHT M G EGL DTAV
Sbjct: 803 GRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATEFFFHT-MGGREGLVDTAV 860
Score = 59.3 bits (142), Expect(3) = 5e-34
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ+IAC
Sbjct: 768 LHWRNSPLIMSQCGSKGSPINISQMIAC 795
Score = 53.5 bits (127), Expect(3) = 5e-34
Identities = 28/40 (70%), Positives = 29/40 (72%), Gaps = 10/40 (25%)
Frame = -1
Query: 90 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
GYMSRRL+KALEDLSIQYD QFLYGDDGMD
Sbjct: 866 GYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGMD 905
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Vitis
vinifera]
Length = 1383
Score = 79.0 bits (193), Expect(3) = 5e-34
Identities = 41/59 (69%), Positives = 42/59 (71%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A GF DR LPHFPR S PDAKGFV +SF TGL ATE FFHT M G EGL DTAV
Sbjct: 803 GRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATEFFFHT-MGGREGLVDTAV 860
Score = 59.3 bits (142), Expect(3) = 5e-34
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ+IAC
Sbjct: 768 LHWRNSPLIMSQCGSKGSPINISQMIAC 795
Score = 53.5 bits (127), Expect(3) = 5e-34
Identities = 28/40 (70%), Positives = 29/40 (72%), Gaps = 10/40 (25%)
Frame = -1
Query: 90 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
GYMSRRL+KALEDLSIQYD QFLYGDDGMD
Sbjct: 866 GYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGMD 905
>ref|XP_010033188.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit rpc1 [Eucalyptus grandis]
Length = 1402
Score = 77.0 bits (188), Expect(3) = 6e-34
Identities = 40/59 (67%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A +GF DR+LPHFPR S P AKGFV NSF +GL ATE FFHT M G EGL DTAV
Sbjct: 807 GRRAPNGFIDRSLPHFPRQSKTPAAKGFVANSFYSGLTATEFFFHT-MGGREGLVDTAV 864
Score = 59.3 bits (142), Expect(3) = 6e-34
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ+IAC
Sbjct: 772 LHWRNSPLIMSQCGSKGSPINISQMIAC 799
Score = 55.1 bits (131), Expect(3) = 6e-34
Identities = 29/40 (72%), Positives = 29/40 (72%), Gaps = 10/40 (25%)
Frame = -1
Query: 90 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
GYMSRRLIKALEDLSI YDN QFLYGDDGMD
Sbjct: 870 GYMSRRLIKALEDLSIHYDNTVRNASGCIVQFLYGDDGMD 909
>gb|KCW52757.1| hypothetical protein EUGRSUZ_J02108 [Eucalyptus grandis]
Length = 1184
Score = 77.0 bits (188), Expect(3) = 6e-34
Identities = 40/59 (67%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A +GF DR+LPHFPR S P AKGFV NSF +GL ATE FFHT M G EGL DTAV
Sbjct: 589 GRRAPNGFIDRSLPHFPRQSKTPAAKGFVANSFYSGLTATEFFFHT-MGGREGLVDTAV 646
Score = 59.3 bits (142), Expect(3) = 6e-34
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ+IAC
Sbjct: 554 LHWRNSPLIMSQCGSKGSPINISQMIAC 581
Score = 55.1 bits (131), Expect(3) = 6e-34
Identities = 29/40 (72%), Positives = 29/40 (72%), Gaps = 10/40 (25%)
Frame = -1
Query: 90 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
GYMSRRLIKALEDLSI YDN QFLYGDDGMD
Sbjct: 652 GYMSRRLIKALEDLSIHYDNTVRNASGCIVQFLYGDDGMD 691
>gb|KCW52758.1| hypothetical protein EUGRSUZ_J02108 [Eucalyptus grandis]
Length = 1084
Score = 77.0 bits (188), Expect(3) = 6e-34
Identities = 40/59 (67%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A +GF DR+LPHFPR S P AKGFV NSF +GL ATE FFHT M G EGL DTAV
Sbjct: 589 GRRAPNGFIDRSLPHFPRQSKTPAAKGFVANSFYSGLTATEFFFHT-MGGREGLVDTAV 646
Score = 59.3 bits (142), Expect(3) = 6e-34
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ+IAC
Sbjct: 554 LHWRNSPLIMSQCGSKGSPINISQMIAC 581
Score = 55.1 bits (131), Expect(3) = 6e-34
Identities = 29/40 (72%), Positives = 29/40 (72%), Gaps = 10/40 (25%)
Frame = -1
Query: 90 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
GYMSRRLIKALEDLSI YDN QFLYGDDGMD
Sbjct: 652 GYMSRRLIKALEDLSIHYDNTVRNASGCIVQFLYGDDGMD 691
>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
polymerase III largest subunit, putative [Ricinus
communis]
Length = 1383
Score = 79.0 bits (193), Expect(3) = 4e-33
Identities = 41/59 (69%), Positives = 44/59 (74%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A GF DR+LPHFPR S P AKGFV NSF +GL+ATE FFHT MAG EGL DTAV
Sbjct: 784 GRRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLMATEFFFHT-MAGREGLVDTAV 841
Score = 55.5 bits (132), Expect(3) = 4e-33
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGS NISQ++AC
Sbjct: 749 LHWRNSPLIMSQCGSKGSVINISQMVAC 776
Score = 54.3 bits (129), Expect(3) = 4e-33
Identities = 28/40 (70%), Positives = 29/40 (72%), Gaps = 10/40 (25%)
Frame = -1
Query: 90 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
GYMSRRLIK LEDLSIQYDN QFLYGDDG+D
Sbjct: 847 GYMSRRLIKGLEDLSIQYDNTVRNASGCIVQFLYGDDGLD 886
>ref|XP_010265589.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Nelumbo
nucifera]
Length = 1392
Score = 78.6 bits (192), Expect(3) = 7e-33
Identities = 41/59 (69%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A +GF DR+LPHFPR S P AKGFV NSF TGL ATE FFHT M G EGL DTAV
Sbjct: 810 GRRAPNGFIDRSLPHFPRKSKTPAAKGFVANSFYTGLTATEFFFHT-MGGREGLVDTAV 867
Score = 59.3 bits (142), Expect(3) = 7e-33
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ+IAC
Sbjct: 775 LHWRNSPLIMSQCGSKGSPINISQMIAC 802
Score = 50.1 bits (118), Expect(3) = 7e-33
Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 10/40 (25%)
Frame = -1
Query: 90 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
GYMSRRLIKALEDL++ YD+ QFLYGDDG+D
Sbjct: 873 GYMSRRLIKALEDLAVYYDDTVRNASGGVVQFLYGDDGLD 912
>ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutrema salsugineum]
gi|557101978|gb|ESQ42341.1| hypothetical protein
EUTSA_v10012446mg [Eutrema salsugineum]
Length = 1375
Score = 78.2 bits (191), Expect(3) = 1e-32
Identities = 40/59 (67%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A GF DR+LPHFPR S P+AKGFV NSF +GL ATE FFHT M G EGL DTAV
Sbjct: 806 GHRAPDGFIDRSLPHFPRMSKTPEAKGFVANSFYSGLTATEFFFHT-MGGREGLVDTAV 863
Score = 58.9 bits (141), Expect(3) = 1e-32
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ++AC
Sbjct: 771 LHWRNSPLIMSQCGSKGSPINISQMVAC 798
Score = 50.1 bits (118), Expect(3) = 1e-32
Identities = 26/46 (56%), Positives = 29/46 (63%), Gaps = 10/46 (21%)
Frame = -1
Query: 108 IDVTS*GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
+ S GYMSRRL+KALEDL + YDN QF YGDDGMD
Sbjct: 863 VKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMD 908
>gb|KNA22334.1| hypothetical protein SOVF_034890 [Spinacia oleracea]
Length = 1352
Score = 82.0 bits (201), Expect(3) = 1e-32
Identities = 42/59 (71%), Positives = 44/59 (74%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A GF DR+LPHFPRNS P+AKGFV NSF TGL ATE FFHT M G EGL DTAV
Sbjct: 797 GRRAPDGFIDRSLPHFPRNSKTPEAKGFVANSFYTGLTATEFFFHT-MGGREGLVDTAV 854
Score = 58.9 bits (141), Expect(3) = 1e-32
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ++AC
Sbjct: 762 LHWRNSPLIMSQCGSKGSPINISQMVAC 789
Score = 46.2 bits (108), Expect(3) = 1e-32
Identities = 23/40 (57%), Positives = 26/40 (65%), Gaps = 10/40 (25%)
Frame = -1
Query: 90 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
GYMSRRL+K LEDL++ YD QF YGDDGMD
Sbjct: 860 GYMSRRLMKCLEDLAVHYDMTVRNSNGTIVQFFYGDDGMD 899
>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X1 [Citrus sinensis]
gi|568870034|ref|XP_006488217.1| PREDICTED: DNA-directed
RNA polymerase III subunit rpc1-like isoform X2 [Citrus
sinensis]
Length = 1404
Score = 75.1 bits (183), Expect(3) = 1e-32
Identities = 39/59 (66%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A +GF DR+LPHFPR + P AKGFV NSF +GL ATE FFHT M G EGL DTAV
Sbjct: 816 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHT-MGGREGLVDTAV 873
Score = 57.0 bits (136), Expect(3) = 1e-32
Identities = 30/40 (75%), Positives = 30/40 (75%), Gaps = 10/40 (25%)
Frame = -1
Query: 90 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
GYMSRRLIKALEDLSIQYDN QFLYGDDGMD
Sbjct: 879 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 918
Score = 55.1 bits (131), Expect(3) = 1e-32
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
L WRNSPLIMSQCGSKGSP NISQ++AC
Sbjct: 781 LPWRNSPLIMSQCGSKGSPINISQMVAC 808
>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
gi|557526635|gb|ESR37941.1| hypothetical protein
CICLE_v10027681mg [Citrus clementina]
Length = 1397
Score = 75.1 bits (183), Expect(3) = 1e-32
Identities = 39/59 (66%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A +GF DR+LPHFPR + P AKGFV NSF +GL ATE FFHT M G EGL DTAV
Sbjct: 809 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHT-MGGREGLVDTAV 866
Score = 57.0 bits (136), Expect(3) = 1e-32
Identities = 30/40 (75%), Positives = 30/40 (75%), Gaps = 10/40 (25%)
Frame = -1
Query: 90 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
GYMSRRLIKALEDLSIQYDN QFLYGDDGMD
Sbjct: 872 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 911
Score = 55.1 bits (131), Expect(3) = 1e-32
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
L WRNSPLIMSQCGSKGSP NISQ++AC
Sbjct: 774 LPWRNSPLIMSQCGSKGSPINISQMVAC 801
>gb|KDO73040.1| hypothetical protein CISIN_1g000828mg [Citrus sinensis]
gi|641854233|gb|KDO73041.1| hypothetical protein
CISIN_1g000828mg [Citrus sinensis]
Length = 1265
Score = 75.1 bits (183), Expect(3) = 1e-32
Identities = 39/59 (66%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A +GF DR+LPHFPR + P AKGFV NSF +GL ATE FFHT M G EGL DTAV
Sbjct: 677 GRRAPNGFIDRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHT-MGGREGLVDTAV 734
Score = 57.0 bits (136), Expect(3) = 1e-32
Identities = 30/40 (75%), Positives = 30/40 (75%), Gaps = 10/40 (25%)
Frame = -1
Query: 90 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
GYMSRRLIKALEDLSIQYDN QFLYGDDGMD
Sbjct: 740 GYMSRRLIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMD 779
Score = 55.1 bits (131), Expect(3) = 1e-32
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
L WRNSPLIMSQCGSKGSP NISQ++AC
Sbjct: 642 LPWRNSPLIMSQCGSKGSPINISQMVAC 669
>gb|AAS79697.1| RNA polymerase III large subunit [Ginkgo biloba]
Length = 548
Score = 79.3 bits (194), Expect(3) = 2e-32
Identities = 41/59 (69%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A +GF DR+LPHFPRN P AKGFV NSF TGL ATE FFHT M G EGL DTAV
Sbjct: 299 GRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTATEFFFHT-MGGREGLVDTAV 356
Score = 59.3 bits (142), Expect(3) = 2e-32
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ+IAC
Sbjct: 264 LHWRNSPLIMSQCGSKGSPINISQMIAC 291
Score = 47.8 bits (112), Expect(3) = 2e-32
Identities = 25/40 (62%), Positives = 27/40 (67%), Gaps = 10/40 (25%)
Frame = -1
Query: 90 GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
GYMSRRL+KALEDLS YD+ Q LYGDDGMD
Sbjct: 362 GYMSRRLMKALEDLSTHYDSTVRNASGGIVQLLYGDDGMD 401
>ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
gi|332009887|gb|AED97270.1| nuclear RNA polymerase C1
[Arabidopsis thaliana]
Length = 1391
Score = 77.0 bits (188), Expect(3) = 2e-32
Identities = 40/59 (67%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A GF DR+LPHFPR S +P AKGFV NSF +GL ATE FFHT M G EGL DTAV
Sbjct: 824 GHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHT-MGGREGLVDTAV 881
Score = 58.9 bits (141), Expect(3) = 2e-32
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ++AC
Sbjct: 789 LHWRNSPLIMSQCGSKGSPINISQMVAC 816
Score = 50.1 bits (118), Expect(3) = 2e-32
Identities = 26/46 (56%), Positives = 29/46 (63%), Gaps = 10/46 (21%)
Frame = -1
Query: 108 IDVTS*GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
+ S GYMSRRL+KALEDL + YDN QF YGDDGMD
Sbjct: 881 VKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMD 926
>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
Length = 1383
Score = 77.0 bits (188), Expect(3) = 2e-32
Identities = 40/59 (67%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A GF DR+LPHFPR S +P AKGFV NSF +GL ATE FFHT M G EGL DTAV
Sbjct: 807 GHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHT-MGGREGLVDTAV 864
Score = 58.9 bits (141), Expect(3) = 2e-32
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ++AC
Sbjct: 772 LHWRNSPLIMSQCGSKGSPINISQMVAC 799
Score = 50.1 bits (118), Expect(3) = 2e-32
Identities = 26/46 (56%), Positives = 29/46 (63%), Gaps = 10/46 (21%)
Frame = -1
Query: 108 IDVTS*GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
+ S GYMSRRL+KALEDL + YDN QF YGDDGMD
Sbjct: 864 VKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMD 909
>ref|XP_010455868.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Camelina sativa]
Length = 1379
Score = 77.0 bits (188), Expect(3) = 2e-32
Identities = 40/59 (67%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A GF DR+LPHFPR S +P AKGFV NSF +GL ATE FFHT M G EGL DTAV
Sbjct: 810 GHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHT-MGGREGLVDTAV 867
Score = 58.9 bits (141), Expect(3) = 2e-32
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ++AC
Sbjct: 775 LHWRNSPLIMSQCGSKGSPINISQMVAC 802
Score = 50.1 bits (118), Expect(3) = 2e-32
Identities = 26/46 (56%), Positives = 29/46 (63%), Gaps = 10/46 (21%)
Frame = -1
Query: 108 IDVTS*GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
+ S GYMSRRL+KALEDL + YDN QF YGDDGMD
Sbjct: 867 VKTASTGYMSRRLMKALEDLLVHYDNTVRNSSGCILQFTYGDDGMD 912
>ref|XP_010483650.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Camelina sativa]
Length = 1377
Score = 77.0 bits (188), Expect(3) = 2e-32
Identities = 40/59 (67%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A GF DR+LPHFPR S +P AKGFV NSF +GL ATE FFHT M G EGL DTAV
Sbjct: 808 GHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHT-MGGREGLVDTAV 865
Score = 58.9 bits (141), Expect(3) = 2e-32
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ++AC
Sbjct: 773 LHWRNSPLIMSQCGSKGSPINISQMVAC 800
Score = 50.1 bits (118), Expect(3) = 2e-32
Identities = 26/46 (56%), Positives = 29/46 (63%), Gaps = 10/46 (21%)
Frame = -1
Query: 108 IDVTS*GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
+ S GYMSRRL+KALEDL + YDN QF YGDDGMD
Sbjct: 865 VKTASTGYMSRRLMKALEDLLVHYDNTVRNSSGCILQFTYGDDGMD 910
>ref|XP_010443797.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Camelina sativa]
Length = 1377
Score = 77.0 bits (188), Expect(3) = 2e-32
Identities = 40/59 (67%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A GF DR+LPHFPR S +P AKGFV NSF +GL ATE FFHT M G EGL DTAV
Sbjct: 808 GHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHT-MGGREGLVDTAV 865
Score = 58.9 bits (141), Expect(3) = 2e-32
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ++AC
Sbjct: 773 LHWRNSPLIMSQCGSKGSPINISQMVAC 800
Score = 50.1 bits (118), Expect(3) = 2e-32
Identities = 26/46 (56%), Positives = 29/46 (63%), Gaps = 10/46 (21%)
Frame = -1
Query: 108 IDVTS*GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
+ S GYMSRRL+KALEDL + YDN QF YGDDGMD
Sbjct: 865 VKTASTGYMSRRLMKALEDLLVHYDNTVRNSSGCILQFTYGDDGMD 910
>ref|XP_006279465.1| hypothetical protein CARUB_v10025743mg [Capsella rubella]
gi|482548169|gb|EOA12363.1| hypothetical protein
CARUB_v10025743mg [Capsella rubella]
Length = 1376
Score = 77.0 bits (188), Expect(3) = 2e-32
Identities = 40/59 (67%), Positives = 43/59 (72%)
Frame = -3
Query: 373 GFPASSGFTDRNLPHFPRNSTAPDAKGFVENSFCTGLIATELFFHTIMAGLEGLGDTAV 197
G A GF DR+LPHFPR S +P AKGFV NSF +GL ATE FFHT M G EGL DTAV
Sbjct: 807 GHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTATEFFFHT-MGGREGLVDTAV 864
Score = 58.9 bits (141), Expect(3) = 2e-32
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -1
Query: 477 LHWRNSPLIMSQCGSKGSPDNISQIIAC 394
LHWRNSPLIMSQCGSKGSP NISQ++AC
Sbjct: 772 LHWRNSPLIMSQCGSKGSPINISQMVAC 799
Score = 50.1 bits (118), Expect(3) = 2e-32
Identities = 26/46 (56%), Positives = 29/46 (63%), Gaps = 10/46 (21%)
Frame = -1
Query: 108 IDVTS*GYMSRRLIKALEDLSIQYDN----------QFLYGDDGMD 1
+ S GYMSRRL+KALEDL + YDN QF YGDDGMD
Sbjct: 864 VKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGDDGMD 909