BLASTX nr result
ID: Papaver31_contig00033855
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver31_contig00033855
(668 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I sub... 55 7e-14
emb|CBI29879.3| unnamed protein product [Vitis vinifera] 55 7e-14
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub... 51 1e-13
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr... 50 1e-13
ref|XP_010546965.1| PREDICTED: DNA-directed RNA polymerase I sub... 54 7e-13
ref|XP_011020318.1| PREDICTED: DNA-directed RNA polymerase I sub... 59 2e-11
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps... 53 3e-11
dbj|BAT51040.1| largest subunit of RNA polymerase I, partial [Pr... 49 2e-10
dbj|BAT51039.1| largest subunit of RNA polymerase I, partial [Pr... 49 2e-10
dbj|BAT51030.1| largest subunit of RNA polymerase I, partial [Pr... 49 2e-10
dbj|BAT51037.1| largest subunit of RNA polymerase I, partial [Pr... 49 2e-10
dbj|BAT51055.1| largest subunit of RNA polymerase I, partial [Pr... 49 3e-10
dbj|BAT51050.1| largest subunit of RNA polymerase I, partial [Pr... 49 3e-10
dbj|BAT51049.1| largest subunit of RNA polymerase I, partial [Pr... 49 3e-10
dbj|BAT51047.1| largest subunit of RNA polymerase I, partial [Pr... 49 3e-10
dbj|BAT51046.1| largest subunit of RNA polymerase I, partial [Pr... 49 3e-10
dbj|BAT51045.1| largest subunit of RNA polymerase I, partial [Pr... 49 3e-10
dbj|BAT51042.1| largest subunit of RNA polymerase I, partial [Pr... 49 4e-10
gb|KOM34151.1| hypothetical protein LR48_Vigan02g030100 [Vigna a... 48 9e-09
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ... 45 2e-08
>ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Vitis
vinifera]
Length = 1691
Score = 54.7 bits (130), Expect(3) = 7e-14
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 30/113 (26%)
Frame = -3
Query: 666 MNVTLGVPRLQETIMRASGENPESCYDLPLAQGEEEDFKQ-------------------- 547
+NVTLG+PRLQE +M A+ + PL G +D +
Sbjct: 1200 VNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEV 1259
Query: 546 ----------QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
Q ++KLK+K+ P + P I LED ++L+ +FVRELED
Sbjct: 1260 SIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELED 1312
Score = 40.0 bits (92), Expect(3) = 7e-14
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = -2
Query: 280 DEDEGDANDIEVEDFGVDPHKRKEKATAEMDYGE 179
DED+ +D ED G+D KRK++A+ EMDYG+
Sbjct: 1357 DEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGD 1390
Score = 29.3 bits (64), Expect(3) = 7e-14
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 416 IKNHLIMLSKVSGITNLGREYEAVIXXXXXXXXDGCGKQSHNG 288
I+NHL++LSK+SGI N + ++ G G NG
Sbjct: 1314 IQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGDGLAGGNG 1356
>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
Length = 1669
Score = 54.7 bits (130), Expect(3) = 7e-14
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 30/113 (26%)
Frame = -3
Query: 666 MNVTLGVPRLQETIMRASGENPESCYDLPLAQGEEEDFKQ-------------------- 547
+NVTLG+PRLQE +M A+ + PL G +D +
Sbjct: 1178 VNVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEV 1237
Query: 546 ----------QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
Q ++KLK+K+ P + P I LED ++L+ +FVRELED
Sbjct: 1238 SIVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELED 1290
Score = 40.0 bits (92), Expect(3) = 7e-14
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = -2
Query: 280 DEDEGDANDIEVEDFGVDPHKRKEKATAEMDYGE 179
DED+ +D ED G+D KRK++A+ EMDYG+
Sbjct: 1335 DEDDDGEDDGGAEDLGLDAQKRKQQASDEMDYGD 1368
Score = 29.3 bits (64), Expect(3) = 7e-14
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 416 IKNHLIMLSKVSGITNLGREYEAVIXXXXXXXXDGCGKQSHNG 288
I+NHL++LSK+SGI N + ++ G G NG
Sbjct: 1292 IQNHLLLLSKISGIKNFLPDSRSMASKETDEDASGDGLAGGNG 1334
>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
sinensis]
Length = 1715
Score = 50.8 bits (120), Expect(3) = 1e-13
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 30/113 (26%)
Frame = -3
Query: 666 MNVTLGVPRLQETIMRASGENPESCYDLPLAQGEEEDFKQ-------------------- 547
MNVTLG+PRLQE + AS + PL G+ ED +
Sbjct: 1213 MNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKKISV 1272
Query: 546 ----------QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
QA V+ L +++ P+++ DI LED + L+V+FVRELED
Sbjct: 1273 KVRAFTSHDGQACSVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVRELED 1325
Score = 42.7 bits (99), Expect(3) = 1e-13
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = -2
Query: 280 DEDEGDANDIEVEDFGVDPHKRKEKATAEMDYGEDG 173
D+D DA+ E ED G+D HK+K++AT E DY EDG
Sbjct: 1370 DDDADDADGEEAEDLGMDAHKQKQRATDEKDY-EDG 1404
Score = 29.6 bits (65), Expect(3) = 1e-13
Identities = 11/18 (61%), Positives = 17/18 (94%)
Frame = -1
Query: 419 TIKNHLIMLSKVSGITNL 366
TI+NHL++LSK++GI N+
Sbjct: 1326 TIQNHLLLLSKINGIKNV 1343
>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
gi|557523327|gb|ESR34694.1| hypothetical protein
CICLE_v10004132mg [Citrus clementina]
Length = 1715
Score = 50.4 bits (119), Expect(3) = 1e-13
Identities = 37/113 (32%), Positives = 52/113 (46%), Gaps = 30/113 (26%)
Frame = -3
Query: 666 MNVTLGVPRLQETIMRASGENPESCYDLPLAQGEEEDFKQ-------------------- 547
MNVTLG+PRLQE + AS + PL G+ ED +
Sbjct: 1213 MNVTLGIPRLQEILTIASKDIKTPVITCPLLVGKTEDDAKRLADKLKKITVADIVKKISV 1272
Query: 546 ----------QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
QA V+ L +++ P+++ DI LED + L+V+FVRELED
Sbjct: 1273 KVRAFTSHDGQACTVYVLTMELYKPKNYPTYTDITLEDWEEILEVVFVRELED 1325
Score = 42.7 bits (99), Expect(3) = 1e-13
Identities = 20/36 (55%), Positives = 26/36 (72%)
Frame = -2
Query: 280 DEDEGDANDIEVEDFGVDPHKRKEKATAEMDYGEDG 173
D+D DA+ E ED G+D HK+K++AT E DY EDG
Sbjct: 1370 DDDADDADGEEAEDLGMDAHKQKQRATDEKDY-EDG 1404
Score = 29.6 bits (65), Expect(3) = 1e-13
Identities = 11/18 (61%), Positives = 17/18 (94%)
Frame = -1
Query: 419 TIKNHLIMLSKVSGITNL 366
TI+NHL++LSK++GI N+
Sbjct: 1326 TIQNHLLLLSKINGIKNV 1343
>ref|XP_010546965.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Tarenaya
hassleriana]
Length = 1671
Score = 53.9 bits (128), Expect(3) = 7e-13
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 30/113 (26%)
Frame = -3
Query: 666 MNVTLGVPRLQETIMRASGENPESCYDLPLAQGEEED----------------------- 556
MNVTLG+PRLQE +M AS + PL +G+ +D
Sbjct: 1185 MNVTLGIPRLQEILMTASADIKTPIMSCPLLKGKTKDDANDIADKLRKITVADIIEGMEV 1244
Query: 555 -------FKQQATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
+++ + KLK+K+ PEH+ + I +D ++L V+F+R LED
Sbjct: 1245 SVVPFTILEKELCSIHKLKMKLYKPEHYPKNTGITAKDWEETLTVVFLRALED 1297
Score = 38.5 bits (88), Expect(3) = 7e-13
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = -2
Query: 280 DEDEGDANDIEVEDFGVDPHKRKEKATAEMDYGE 179
DEDE DA +++D G D KRK++AT EMDY E
Sbjct: 1342 DEDE-DAEGQDIDDLGSDAQKRKKQATDEMDYEE 1374
Score = 28.1 bits (61), Expect(3) = 7e-13
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 416 IKNHLIMLSKVSGITNLGRE 357
I+NH+++LSK+SGI N E
Sbjct: 1299 IQNHIVLLSKMSGIKNFVEE 1318
>ref|XP_011020318.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Populus
euphratica]
Length = 1699
Score = 58.9 bits (141), Expect(2) = 2e-11
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 30/113 (26%)
Frame = -3
Query: 666 MNVTLGVPRLQETIMRASGENPESCYDLPLAQGEEEDFKQQAT----------------- 538
MNVTLG+PRLQE +M AS + PL +G ++ ++ +
Sbjct: 1180 MNVTLGIPRLQEILMTASADIKTPIMTCPLQEGRTKEDAERLSDKLKKVTVADIIESMEV 1239
Query: 537 -------------HVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
++KLK+K+ P H+ DI +E+ ++L+VLFVRELED
Sbjct: 1240 SVMPFAVQNDGICRIYKLKMKLYTPAHYPQHADISVENWEETLEVLFVRELED 1292
Score = 37.4 bits (85), Expect(2) = 2e-11
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = -2
Query: 307 VSNHIMEETD-EDEGDANDIEVEDFGVDPHKRKEKATAEMDYGEDG 173
VS +I E + +D+ D E +D G+D KRK++ T EMDY +DG
Sbjct: 1326 VSGNISHEGENDDDSDDEGEEADDLGLDVQKRKQQVTDEMDY-DDG 1370
>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
gi|482559195|gb|EOA23386.1| hypothetical protein
CARUB_v10016563mg [Capsella rubella]
Length = 1651
Score = 53.1 bits (126), Expect(2) = 3e-11
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 30/113 (26%)
Frame = -3
Query: 666 MNVTLGVPRLQETIMRASGENPESCYDLPLAQGEEED----------------------- 556
MNVTLG+PRLQE +M A+ + PL +G+ ++
Sbjct: 1174 MNVTLGIPRLQEILMTAAADIKTPIMTCPLLKGKTKEDANDITDKLRKITVADIIKDMEL 1233
Query: 555 -------FKQQATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
K + KLK+ + PEH+ + DI ED +++ V+F+R+LED
Sbjct: 1234 SVVPYTIHKNDICSIHKLKINLYKPEHYPKNTDITEEDWEETMKVVFLRKLED 1286
Score = 42.4 bits (98), Expect(2) = 3e-11
Identities = 20/42 (47%), Positives = 26/42 (61%)
Frame = -2
Query: 301 NHIMEETDEDEGDANDIEVEDFGVDPHKRKEKATAEMDYGED 176
N I + ED+ D EV+D G D KRK++AT EMDY E+
Sbjct: 1320 NSISGKQTEDDDDGEGTEVDDLGSDAQKRKKQATDEMDYEEN 1361
>dbj|BAT51040.1| largest subunit of RNA polymerase I, partial [Prunus sargentii]
gi|953266337|dbj|BAT51041.1| largest subunit of RNA
polymerase I, partial [Prunus verecunda]
Length = 284
Score = 48.5 bits (114), Expect(3) = 2e-10
Identities = 27/43 (62%), Positives = 31/43 (72%), Gaps = 4/43 (9%)
Frame = -2
Query: 289 EETDEDEGDANDIE----VEDFGVDPHKRKEKATAEMDYGEDG 173
EE D+D G A+D E VEDFG+D HKRK +AT EMDY EDG
Sbjct: 120 EEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEMDY-EDG 161
Score = 35.8 bits (81), Expect(3) = 2e-10
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -3
Query: 546 QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
Q ++KL++ + PEH ++ ED + L+V+FVRELED
Sbjct: 36 QTCRIYKLEMTLHIPEHLQTIVEYSSEDWEEILEVVFVRELED 78
Score = 27.7 bits (60), Expect(3) = 2e-10
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = -1
Query: 416 IKNHLIMLSKVSGITN 369
I+NH+++LSK+SGI N
Sbjct: 80 IQNHILLLSKISGIKN 95
>dbj|BAT51039.1| largest subunit of RNA polymerase I, partial [Prunus serrulata var.
spontanea]
Length = 284
Score = 48.5 bits (114), Expect(3) = 2e-10
Identities = 27/43 (62%), Positives = 31/43 (72%), Gaps = 4/43 (9%)
Frame = -2
Query: 289 EETDEDEGDANDIE----VEDFGVDPHKRKEKATAEMDYGEDG 173
EE D+D G A+D E VEDFG+D HKRK +AT EMDY EDG
Sbjct: 120 EEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEMDY-EDG 161
Score = 35.8 bits (81), Expect(3) = 2e-10
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -3
Query: 546 QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
Q ++KL++ + PEH ++ ED + L+V+FVRELED
Sbjct: 36 QTCRIYKLEMTLHIPEHLQTIVEYSSEDWEEILEVVFVRELED 78
Score = 27.7 bits (60), Expect(3) = 2e-10
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = -1
Query: 416 IKNHLIMLSKVSGITN 369
I+NH+++LSK+SGI N
Sbjct: 80 IQNHILLLSKISGIKN 95
>dbj|BAT51030.1| largest subunit of RNA polymerase I, partial [Prunus apetala]
gi|953266317|dbj|BAT51031.1| largest subunit of RNA
polymerase I, partial [Prunus apetala]
gi|953266319|dbj|BAT51032.1| largest subunit of RNA
polymerase I, partial [Prunus incisa]
gi|953266321|dbj|BAT51033.1| largest subunit of RNA
polymerase I, partial [Prunus incisa]
gi|953266323|dbj|BAT51034.1| largest subunit of RNA
polymerase I, partial [Prunus incisa]
gi|953266325|dbj|BAT51035.1| largest subunit of RNA
polymerase I, partial [Prunus nipponica]
gi|953266327|dbj|BAT51036.1| largest subunit of RNA
polymerase I, partial [Prunus nipponica]
gi|953266331|dbj|BAT51038.1| largest subunit of RNA
polymerase I, partial [Prunus serrulata var. spontanea]
gi|953266341|dbj|BAT51043.1| largest subunit of RNA
polymerase I, partial [Prunus speciosa]
gi|953266343|dbj|BAT51044.1| largest subunit of RNA
polymerase I, partial [Prunus speciosa]
gi|953266361|dbj|BAT51053.1| largest subunit of RNA
polymerase I, partial [Prunus yedoensis]
Length = 284
Score = 48.5 bits (114), Expect(3) = 2e-10
Identities = 27/43 (62%), Positives = 31/43 (72%), Gaps = 4/43 (9%)
Frame = -2
Query: 289 EETDEDEGDANDIE----VEDFGVDPHKRKEKATAEMDYGEDG 173
EE D+D G A+D E VEDFG+D HKRK +AT EMDY EDG
Sbjct: 120 EEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEMDY-EDG 161
Score = 35.8 bits (81), Expect(3) = 2e-10
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -3
Query: 546 QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
Q ++KL++ + PEH ++ ED + L+V+FVRELED
Sbjct: 36 QTCRIYKLEMTLHIPEHLQTIVEYSSEDWEEILEVVFVRELED 78
Score = 27.7 bits (60), Expect(3) = 2e-10
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = -1
Query: 416 IKNHLIMLSKVSGITN 369
I+NH+++LSK+SGI N
Sbjct: 80 IQNHILLLSKISGIKN 95
>dbj|BAT51037.1| largest subunit of RNA polymerase I, partial [Prunus serrulata var.
spontanea]
Length = 276
Score = 48.5 bits (114), Expect(3) = 2e-10
Identities = 27/43 (62%), Positives = 31/43 (72%), Gaps = 4/43 (9%)
Frame = -2
Query: 289 EETDEDEGDANDIE----VEDFGVDPHKRKEKATAEMDYGEDG 173
EE D+D G A+D E VEDFG+D HKRK +AT EMDY EDG
Sbjct: 120 EEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEMDY-EDG 161
Score = 35.8 bits (81), Expect(3) = 2e-10
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -3
Query: 546 QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
Q ++KL++ + PEH ++ ED + L+V+FVRELED
Sbjct: 36 QTCRIYKLEMTLHIPEHLQTIVEYSSEDWEEILEVVFVRELED 78
Score = 27.7 bits (60), Expect(3) = 2e-10
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = -1
Query: 416 IKNHLIMLSKVSGITN 369
I+NH+++LSK+SGI N
Sbjct: 80 IQNHILLLSKISGIKN 95
>dbj|BAT51055.1| largest subunit of RNA polymerase I, partial [Prunus armeniaca]
Length = 276
Score = 48.5 bits (114), Expect(3) = 3e-10
Identities = 27/43 (62%), Positives = 31/43 (72%), Gaps = 4/43 (9%)
Frame = -2
Query: 289 EETDEDEGDANDIE----VEDFGVDPHKRKEKATAEMDYGEDG 173
EE D+D G A+D E VEDFG+D HKRK +AT EMDY EDG
Sbjct: 120 EEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEMDY-EDG 161
Score = 35.4 bits (80), Expect(3) = 3e-10
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -3
Query: 546 QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
Q ++KL++ + PEH ++ ED + L+++FVRELED
Sbjct: 36 QTCRIYKLEMTLHIPEHLRTIIEYSSEDWEEILEIVFVRELED 78
Score = 27.7 bits (60), Expect(3) = 3e-10
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = -1
Query: 416 IKNHLIMLSKVSGITN 369
I+NH+++LSK+SGI N
Sbjct: 80 IQNHILLLSKISGIKN 95
>dbj|BAT51050.1| largest subunit of RNA polymerase I, partial [Prunus cerasoides
var. campanulata]
Length = 276
Score = 48.5 bits (114), Expect(3) = 3e-10
Identities = 27/43 (62%), Positives = 31/43 (72%), Gaps = 4/43 (9%)
Frame = -2
Query: 289 EETDEDEGDANDIE----VEDFGVDPHKRKEKATAEMDYGEDG 173
EE D+D G A+D E VEDFG+D HKRK +AT EMDY EDG
Sbjct: 120 EEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEMDY-EDG 161
Score = 35.4 bits (80), Expect(3) = 3e-10
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -3
Query: 546 QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
Q ++KL++ + PEH ++ ED + L+++FVRELED
Sbjct: 36 QTCRIYKLEMTLHIPEHLQTIVEYSSEDWEEILEIVFVRELED 78
Score = 27.7 bits (60), Expect(3) = 3e-10
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = -1
Query: 416 IKNHLIMLSKVSGITN 369
I+NH+++LSK+SGI N
Sbjct: 80 IQNHILLLSKISGIKN 95
>dbj|BAT51049.1| largest subunit of RNA polymerase I, partial [Prunus pseudocerasus]
Length = 276
Score = 48.5 bits (114), Expect(3) = 3e-10
Identities = 27/43 (62%), Positives = 31/43 (72%), Gaps = 4/43 (9%)
Frame = -2
Query: 289 EETDEDEGDANDIE----VEDFGVDPHKRKEKATAEMDYGEDG 173
EE D+D G A+D E VEDFG+D HKRK +AT EMDY EDG
Sbjct: 120 EEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEMDY-EDG 161
Score = 35.4 bits (80), Expect(3) = 3e-10
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -3
Query: 546 QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
Q ++KL++ + PEH ++ ED + L+++FVRELED
Sbjct: 36 QTCRIYKLEMTLHIPEHLQTIVEYSSEDWEEILEIVFVRELED 78
Score = 27.7 bits (60), Expect(3) = 3e-10
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = -1
Query: 416 IKNHLIMLSKVSGITN 369
I+NH+++LSK+SGI N
Sbjct: 80 IQNHILLLSKISGIKN 95
>dbj|BAT51047.1| largest subunit of RNA polymerase I, partial [Prunus subhirtella
var. ascendens] gi|953266351|dbj|BAT51048.1| largest
subunit of RNA polymerase I, partial [Prunus subhirtella
var. ascendens] gi|953266357|dbj|BAT51051.1| largest
subunit of RNA polymerase I, partial [Prunus cerasoides]
gi|953266359|dbj|BAT51052.1| largest subunit of RNA
polymerase I, partial [Prunus yedoensis]
gi|953266363|dbj|BAT51054.1| largest subunit of RNA
polymerase I, partial [Prunus subhirtella]
Length = 276
Score = 48.5 bits (114), Expect(3) = 3e-10
Identities = 27/43 (62%), Positives = 31/43 (72%), Gaps = 4/43 (9%)
Frame = -2
Query: 289 EETDEDEGDANDIE----VEDFGVDPHKRKEKATAEMDYGEDG 173
EE D+D G A+D E VEDFG+D HKRK +AT EMDY EDG
Sbjct: 120 EEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEMDY-EDG 161
Score = 35.4 bits (80), Expect(3) = 3e-10
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -3
Query: 546 QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
Q ++KL++ + PEH ++ ED + L+++FVRELED
Sbjct: 36 QTCRIYKLEMTLHIPEHLQTIVEYSSEDWEEILEIVFVRELED 78
Score = 27.7 bits (60), Expect(3) = 3e-10
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = -1
Query: 416 IKNHLIMLSKVSGITN 369
I+NH+++LSK+SGI N
Sbjct: 80 IQNHILLLSKISGIKN 95
>dbj|BAT51046.1| largest subunit of RNA polymerase I, partial [Prunus maximowiczii]
Length = 276
Score = 48.5 bits (114), Expect(3) = 3e-10
Identities = 27/43 (62%), Positives = 31/43 (72%), Gaps = 4/43 (9%)
Frame = -2
Query: 289 EETDEDEGDANDIE----VEDFGVDPHKRKEKATAEMDYGEDG 173
EE D+D G A+D E VEDFG+D HKRK +AT EMDY EDG
Sbjct: 120 EEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEMDY-EDG 161
Score = 35.4 bits (80), Expect(3) = 3e-10
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -3
Query: 546 QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
Q ++KL++ + PEH ++ ED + L+++FVRELED
Sbjct: 36 QTCRIYKLEMTLHIPEHLQTIVEYSSEDWEEILEIVFVRELED 78
Score = 27.7 bits (60), Expect(3) = 3e-10
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = -1
Query: 416 IKNHLIMLSKVSGITN 369
I+NH+++LSK+SGI N
Sbjct: 80 IQNHILLLSKISGIKN 95
>dbj|BAT51045.1| largest subunit of RNA polymerase I, partial [Prunus maximowiczii]
Length = 276
Score = 48.5 bits (114), Expect(3) = 3e-10
Identities = 27/43 (62%), Positives = 31/43 (72%), Gaps = 4/43 (9%)
Frame = -2
Query: 289 EETDEDEGDANDIE----VEDFGVDPHKRKEKATAEMDYGEDG 173
EE D+D G A+D E VEDFG+D HKRK +AT EMDY EDG
Sbjct: 120 EEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEMDY-EDG 161
Score = 35.4 bits (80), Expect(3) = 3e-10
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -3
Query: 546 QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
Q ++KL++ + PEH ++ ED + L+++FVRELED
Sbjct: 36 QTCRIYKLEMTLHIPEHLQTIVEYSSEDWEEILEIVFVRELED 78
Score = 27.7 bits (60), Expect(3) = 3e-10
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = -1
Query: 416 IKNHLIMLSKVSGITN 369
I+NH+++LSK+SGI N
Sbjct: 80 IQNHILLLSKISGIKN 95
>dbj|BAT51042.1| largest subunit of RNA polymerase I, partial [Prunus verecunda]
Length = 284
Score = 48.5 bits (114), Expect(3) = 4e-10
Identities = 27/43 (62%), Positives = 31/43 (72%), Gaps = 4/43 (9%)
Frame = -2
Query: 289 EETDEDEGDANDIE----VEDFGVDPHKRKEKATAEMDYGEDG 173
EE D+D G A+D E VEDFG+D HKRK +AT EMDY EDG
Sbjct: 120 EEEDDDNGGADDGEHGEGVEDFGLDAHKRKLQATDEMDY-EDG 161
Score = 35.8 bits (81), Expect(3) = 4e-10
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -3
Query: 546 QATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
Q ++KL++ + PEH ++ ED + L+V+FVRELED
Sbjct: 36 QTCRIYKLEMTLHIPEHLQTIVEYSSEDWEEILEVVFVRELED 78
Score = 26.9 bits (58), Expect(3) = 4e-10
Identities = 9/16 (56%), Positives = 15/16 (93%)
Frame = -1
Query: 416 IKNHLIMLSKVSGITN 369
++NH+++LSK+SGI N
Sbjct: 80 LQNHILLLSKISGIKN 95
>gb|KOM34151.1| hypothetical protein LR48_Vigan02g030100 [Vigna angularis]
Length = 1592
Score = 47.8 bits (112), Expect(3) = 9e-09
Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 30/113 (26%)
Frame = -3
Query: 666 MNVTLGVPRLQETIMRASGENPESCYDLPLAQGEEED----------------------- 556
MNVTLG+PRLQE +M AS + PL + +
Sbjct: 1097 MNVTLGIPRLQEIVMAASRDIKTPFMTCPLRPNKSMEDAICLADKLKKITVADIIKSMKV 1156
Query: 555 -------FKQQATHVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
Q ++KL +K+ P+ + DI LED +L V FVRELED
Sbjct: 1157 SVVQVTVHAGQVCSIYKLVMKLYKPKQYPKYTDITLEDWEDTLRVFFVRELED 1209
Score = 35.8 bits (81), Expect(3) = 9e-09
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -2
Query: 289 EETDEDEGDANDIE-VEDFGVDPHKRKEKATAEMDYGEDG 173
++ D+D+G D E ED G D KRK + T E+DY EDG
Sbjct: 1256 KDDDDDDGVVEDTEGYEDLGSDAQKRKRQGTDEVDY-EDG 1294
Score = 22.7 bits (47), Expect(3) = 9e-09
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = -1
Query: 416 IKNHLIMLSKVSGI 375
I++H+ +LSK+SGI
Sbjct: 1211 IESHMALLSKISGI 1224
>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
putative isoform 2 [Theobroma cacao]
Length = 1689
Score = 45.1 bits (105), Expect(2) = 2e-08
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 30/113 (26%)
Frame = -3
Query: 666 MNVTLGVPRLQETIMRASGENPESCYDLPLAQGE-EEDFKQQAT---------------- 538
MNVTLG+PRLQE +M AS + PL +G+ +ED A
Sbjct: 1190 MNVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEV 1249
Query: 537 -------------HVFKLKVKVLGPEHFLPSMDIKLEDRMQSLDVLFVRELED 418
++KLK+ + P+ + + DI ++D L V+F+RELED
Sbjct: 1250 SVAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELED 1302
Score = 40.8 bits (94), Expect(2) = 2e-08
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -2
Query: 304 SNHIMEETDEDEGDANDIE-VEDFGVDPHKRKEKATAEMDYGED 176
S + D+D+ DA+D E ED G+D K+K++ T EMDY +D
Sbjct: 1341 SRETKNDDDDDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDD 1384