BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver31_contig00029348
         (1162 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008236380.1| PREDICTED: RNA pseudouridine synthase 4, mit...   435   e-119
ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prun...   433   e-118
ref|XP_010271251.1| PREDICTED: RNA pseudouridine synthase 4, mit...   430   e-117
ref|XP_002282614.1| PREDICTED: RNA pseudouridine synthase 4, mit...   430   e-117
ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prun...   426   e-116
ref|XP_011001179.1| PREDICTED: RNA pseudouridine synthase 4, mit...   413   e-112
ref|XP_009378853.1| PREDICTED: RNA pseudouridine synthase 4, mit...   409   e-111
ref|XP_011001172.1| PREDICTED: RNA pseudouridine synthase 4, mit...   409   e-111
ref|XP_009341344.1| PREDICTED: RNA pseudouridine synthase 4, mit...   408   e-111
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   406   e-110
ref|XP_010647894.1| PREDICTED: RNA pseudouridine synthase 4, mit...   404   e-109
ref|XP_010096290.1| RNA pseudourine synthase 4 [Morus notabilis]...   401   e-109
ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mit...   398   e-108
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   398   e-108
ref|XP_012075891.1| PREDICTED: RNA pseudouridine synthase 4, mit...   397   e-108
ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [...   394   e-107
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   392   e-106
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   386   e-104
ref|XP_012450617.1| PREDICTED: RNA pseudouridine synthase 4, mit...   384   e-104
ref|XP_009805028.1| PREDICTED: RNA pseudouridine synthase 4, mit...   382   e-103

>ref|XP_008236380.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Prunus mume]
          Length = 483

 Score =  435 bits (1118), Expect = e-119
 Identities = 215/339 (63%), Positives = 263/339 (77%), Gaps = 3/339 (0%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVIN 983
            MN GD IHLP+SV          D   L  DK+EC   ++E T+I SLELYKDP+IIVIN
Sbjct: 150  MNVGDRIHLPISVQE-----FPNDKQELPNDKKECHCSEEEVTFIRSLELYKDPAIIVIN 204

Query: 982  KPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILH 803
            KPPG+PVQGGIGIK+SLD LA+  L YD+SE PRLVHRLDRDSSG+LV+GRTQTSAT+LH
Sbjct: 205  KPPGMPVQGGIGIKRSLDELAAACLSYDFSESPRLVHRLDRDSSGILVMGRTQTSATVLH 264

Query: 802  SIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERIT- 626
            SIFREKTF AS D  D+ KRILQ++YWALVIG+PR+  GLISAPLGKV++DNGKS+RIT 
Sbjct: 265  SIFREKTFGASNDVIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITI 324

Query: 625  VDDNRNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 446
            V+D++ +PSQHAIT+Y+++ SP  G TW+EL+PLTGRKHQLRVHCAEVL TPIVGDYKYG
Sbjct: 325  VNDSQTLPSQHAITKYKVIGSPCPGYTWLELTPLTGRKHQLRVHCAEVLQTPIVGDYKYG 384

Query: 445  WQAHKNWKGLPWTNPTERSAEKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDVH 272
            WQ H+NWK L W+N    S E+ PK  +  F L+ ++GS+SEK P LHLHC+QM+ P+V+
Sbjct: 385  WQTHRNWKPLAWSNNECHSDEEFPKTKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVN 444

Query: 271  MALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
            +ALQ+V              + VAPLP+ MQRSW+I NS
Sbjct: 445  LALQNVKLHSDSDLSELESLELVAPLPSFMQRSWNITNS 483


>ref|XP_007199810.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
            gi|462395210|gb|EMJ01009.1| hypothetical protein
            PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  433 bits (1113), Expect = e-118
 Identities = 215/339 (63%), Positives = 263/339 (77%), Gaps = 3/339 (0%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVIN 983
            MN GD IHLP+SV          D   L  DK+EC   ++E T+I SLELYKDP+IIVIN
Sbjct: 150  MNVGDRIHLPLSVQE-----FPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVIN 204

Query: 982  KPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILH 803
            KPPG+PVQGGIGIK+SLD LA+  L YD+SEPPRLVHRLDRDSSG+LV+GRTQTSAT+LH
Sbjct: 205  KPPGMPVQGGIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLH 264

Query: 802  SIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERIT- 626
            SIFREKTF AS D  D+ KRILQ++YWALVIG+PR+  GLISAPLGKV++DNGKS+RIT 
Sbjct: 265  SIFREKTFGASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITI 324

Query: 625  VDDNRNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 446
            V+D++ +PSQHAIT+Y+++ SP  G TW+EL+PLTGRKHQLRVHCAEVL TPIVGDYKYG
Sbjct: 325  VNDSQTLPSQHAITKYKVIGSPCPGYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYG 384

Query: 445  WQAHKNWKGLPWTNPTERSAEKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDVH 272
            WQ H+NWK L W+N    S E+ PK  +  F L+ ++GS+SEK P LHLHC+QM+ P+V+
Sbjct: 385  WQTHRNWKPLAWSNNECHSDEEFPKRKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVN 444

Query: 271  MALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
            +ALQ+V              + VA LP+ MQRSW+I NS
Sbjct: 445  LALQNVKLHSDSDLSELESLELVAALPSFMQRSWNITNS 483


>ref|XP_010271251.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Nelumbo nucifera]
          Length = 472

 Score =  430 bits (1106), Expect = e-117
 Identities = 216/335 (64%), Positives = 257/335 (76%), Gaps = 1/335 (0%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVIN 983
            MN GD I LP++V              L  + QE   ++ E +YI SLELYKDP+II +N
Sbjct: 150  MNLGDRIFLPITVQE------------LPSETQEHYCNEDEISYICSLELYKDPAIIAVN 197

Query: 982  KPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILH 803
            KP G+PVQGGIGIK+SLD LA+TYLRYDYSEPPRLVHRLDRDSSG+LV+GRTQTSATILH
Sbjct: 198  KPHGMPVQGGIGIKKSLDELAATYLRYDYSEPPRLVHRLDRDSSGILVMGRTQTSATILH 257

Query: 802  SIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITV 623
            SIFREKTF AS +  DN K ILQ++YWALVIGTP+RA+GLISAPLGKV++D+GKSER+TV
Sbjct: 258  SIFREKTFGASIN--DNDKMILQRRYWALVIGTPKRANGLISAPLGKVVLDDGKSERMTV 315

Query: 622  DDNRN-MPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 446
            D N N + SQHA+T+Y++++S   G TW+EL PLTGRKHQLRVHCAEVLGTPIVGDYKYG
Sbjct: 316  DTNGNAISSQHAVTKYQVMKSSAHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYG 375

Query: 445  WQAHKNWKGLPWTNPTERSAEKLPKMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVHMA 266
            WQAH+ WK L W+NP +       K   F LDS+ GSI+EK+PHLHLHCRQMIFP++ +A
Sbjct: 376  WQAHRKWKPLSWSNPQKNKKLPRSKESPFGLDSEGGSIAEKQPHLHLHCRQMIFPNIALA 435

Query: 265  LQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDIL 161
            LQH+              + VAPLP HMQRSW IL
Sbjct: 436  LQHLQSSSNCDLSELESLNLVAPLPPHMQRSWGIL 470


>ref|XP_002282614.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
            [Vitis vinifera] gi|296090438|emb|CBI40257.3| unnamed
            protein product [Vitis vinifera]
          Length = 476

 Score =  430 bits (1106), Expect = e-117
 Identities = 217/339 (64%), Positives = 260/339 (76%), Gaps = 3/339 (0%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVIN 983
            MN GD I LP++V                 +K E   +D+E  ++H+LELYKDP+IIV+N
Sbjct: 150  MNLGDQILLPITVEE------------FPSEKHEYHCNDEEINFVHNLELYKDPAIIVVN 197

Query: 982  KPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILH 803
            KPPGLPVQGGIGIK+SLD LA+TYLRYD SEPPRLVHRLDRDSSG+L++GRTQTSATILH
Sbjct: 198  KPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILH 257

Query: 802  SIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITV 623
            SIFREKTF AS +  D  KRILQ++YWALVIG+PRR  GLISAPLGKV++D+GKSERIT+
Sbjct: 258  SIFREKTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITI 317

Query: 622  DDN-RNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 446
             DN + M SQHAITEYR+++S   G TW+ELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG
Sbjct: 318  VDNVQTMSSQHAITEYRVIKSSCHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 377

Query: 445  WQAHKNWKGLPWTNPTERSAEKLP--KMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVH 272
            WQAH+ WK L  +N  +   E L   K   F LD ++GSI +K+PHLHLHC+QM+ P+V 
Sbjct: 378  WQAHRKWKQLFQSNIEKNLDENLSNRKTHPFGLDLESGSILDKQPHLHLHCKQMVLPNVS 437

Query: 271  MALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
            +ALQ++              +FVAPLP+HMQRSWDILNS
Sbjct: 438  LALQNLQLSAECDLSELESLEFVAPLPSHMQRSWDILNS 476


>ref|XP_007199809.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
            gi|462395209|gb|EMJ01008.1| hypothetical protein
            PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  426 bits (1095), Expect = e-116
 Identities = 214/339 (63%), Positives = 262/339 (77%), Gaps = 3/339 (0%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVIN 983
            MN GD IHLP+SV          D   L  DK+EC   ++E T+I SLELYKDP+IIVIN
Sbjct: 150  MNVGDRIHLPLSVQE-----FPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVIN 204

Query: 982  KPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILH 803
            KPPG+PVQGGIGIK+SLD LA+  L YD+SEPPRLVHRLDRDSSG+LV+GRTQTSAT+LH
Sbjct: 205  KPPGMPVQGGIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLH 264

Query: 802  SIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERIT- 626
            SIFREKTF AS D  D+ KRILQ++YWALVIG+PR+  GLISAPLGKV++DNGKS+RIT 
Sbjct: 265  SIFREKTFGASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITI 324

Query: 625  VDDNRNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 446
            V+D++ +PSQHAIT+Y+++ SP    TW+EL+PLTGRKHQLRVHCAEVL TPIVGDYKYG
Sbjct: 325  VNDSQTLPSQHAITKYKVIGSPC--YTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYG 382

Query: 445  WQAHKNWKGLPWTNPTERSAEKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDVH 272
            WQ H+NWK L W+N    S E+ PK  +  F L+ ++GS+SEK P LHLHC+QM+ P+V+
Sbjct: 383  WQTHRNWKPLAWSNNECHSDEEFPKRKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVN 442

Query: 271  MALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
            +ALQ+V              + VA LP+ MQRSW+I NS
Sbjct: 443  LALQNVKLHSDSDLSELESLELVAALPSFMQRSWNITNS 481


>ref|XP_011001179.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
            [Populus euphratica]
          Length = 471

 Score =  413 bits (1061), Expect = e-112
 Identities = 207/337 (61%), Positives = 251/337 (74%), Gaps = 3/337 (0%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVIN 983
            M+ GD I LP+SV +            L  +KQ+C   ++E  +I  LELYKD +IIV+N
Sbjct: 146  MDVGDRIFLPISVKA------------LPAEKQDCHCSEEETNFIRGLELYKDDAIIVVN 193

Query: 982  KPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILH 803
            KPPG+PVQGGIGIK+SLD L+++    DYSEPPRLVHRLDRD SG+LV+GRTQTSAT+LH
Sbjct: 194  KPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 253

Query: 802  SIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITV 623
            +IFREKT  AS D   + +RILQ+KYWALVIG+PRR  GLISAPLGKV++DNGKS+RITV
Sbjct: 254  AIFREKTLAASNDDVGDKRRILQRKYWALVIGSPRRQKGLISAPLGKVVVDNGKSDRITV 313

Query: 622  DDN-RNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 446
             +N +N+ SQHA+T+YR+++S   G TW+ELSPLTGRKHQLRVHCAEVLGTPIVGDYKY 
Sbjct: 314  VENSQNLSSQHAVTQYRVIESS-HGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYA 372

Query: 445  WQAHKNWKGLPWTNPTERSAEK--LPKMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVH 272
            WQAH+NWK LPW+N  + S EK    K+  F LD  +G ISEK P LHLHC+QM+ PDV 
Sbjct: 373  WQAHRNWKQLPWSNIEDNSNEKSRSEKILPFALDLDSGGISEKHPRLHLHCKQMVLPDVS 432

Query: 271  MALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDIL 161
             ALQ VH              F APLP +M+RSWDIL
Sbjct: 433  KALQDVHLSSDYDFSQLASLKFDAPLPPYMKRSWDIL 469


>ref|XP_009378853.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Pyrus x
            bretschneideri] gi|694408325|ref|XP_009378854.1|
            PREDICTED: RNA pseudouridine synthase 4,
            mitochondrial-like [Pyrus x bretschneideri]
          Length = 361

 Score =  409 bits (1051), Expect = e-111
 Identities = 209/339 (61%), Positives = 255/339 (75%), Gaps = 4/339 (1%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHS-PAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVI 986
            MN GD IHLP SV   PA++      H+ +  KQEC   ++E  +I SLELYKDP+IIVI
Sbjct: 28   MNIGDRIHLPFSVQEFPADK------HKSSNYKQECHCSEEEINFIRSLELYKDPAIIVI 81

Query: 985  NKPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATIL 806
            NKPPG+PVQGGIGIK+SLD LA+  L YD SEPPRLVHRLDRDSSG+LV+GRTQT A +L
Sbjct: 82   NKPPGMPVQGGIGIKRSLDKLATACLSYDLSEPPRLVHRLDRDSSGLLVMGRTQTIAAVL 141

Query: 805  HSIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERIT 626
            HSIFREKT  AS D TD+ KRILQ++YWALVIG+PR+  GLISAPL KV++DNGKSERIT
Sbjct: 142  HSIFREKTVGASNDVTDDAKRILQRRYWALVIGSPRQRKGLISAPLVKVVVDNGKSERIT 201

Query: 625  -VDDNRNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKY 449
              +D++ + SQHAIT+Y+++ S   G TW+EL+PLTGRKHQLRVHCAEVL TPIVGDYKY
Sbjct: 202  AANDSQTLSSQHAITKYKVIGSSCPGFTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKY 261

Query: 448  GWQAHKNWKGLPWTNPTERSAEKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDV 275
            GWQ H+NWK L  +N      E+L    +  F L+  +GSISEK P LHLHC+QM+ P+V
Sbjct: 262  GWQTHRNWKPLSSSNTESHWNEELRPRRNLPFDLNMDSGSISEKTPRLHLHCKQMVLPNV 321

Query: 274  HMALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILN 158
            ++ALQ+V              + VAPLP++MQRSWDI N
Sbjct: 322  YLALQNVKLHSDCDLSELESLELVAPLPSYMQRSWDITN 360


>ref|XP_011001172.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
            [Populus euphratica]
          Length = 475

 Score =  409 bits (1050), Expect = e-111
 Identities = 207/341 (60%), Positives = 252/341 (73%), Gaps = 7/341 (2%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVIN 983
            M+ GD I LP+SV +            L  +KQ+C   ++E  +I  LELYKD +IIV+N
Sbjct: 146  MDVGDRIFLPISVKA------------LPAEKQDCHCSEEETNFIRGLELYKDDAIIVVN 193

Query: 982  KPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILH 803
            KPPG+PVQGGIGIK+SLD L+++    DYSEPPRLVHRLDRD SG+LV+GRTQTSAT+LH
Sbjct: 194  KPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 253

Query: 802  SIFREKTFEASADATD----NTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSE 635
            +IFREKT  AS D +     + +RILQ+KYWALVIG+PRR  GLISAPLGKV++DNGKS+
Sbjct: 254  AIFREKTLAASNDVSSTDVGDKRRILQRKYWALVIGSPRRQKGLISAPLGKVVVDNGKSD 313

Query: 634  RITVDDN-RNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGD 458
            RITV +N +N+ SQHA+T+YR+++S   G TW+ELSPLTGRKHQLRVHCAEVLGTPIVGD
Sbjct: 314  RITVVENSQNLSSQHAVTQYRVIESS-HGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGD 372

Query: 457  YKYGWQAHKNWKGLPWTNPTERSAEK--LPKMPSFVLDSKTGSISEKEPHLHLHCRQMIF 284
            YKY WQAH+NWK LPW+N  + S EK    K+  F LD  +G ISEK P LHLHC+QM+ 
Sbjct: 373  YKYAWQAHRNWKQLPWSNIEDNSNEKSRSEKILPFALDLDSGGISEKHPRLHLHCKQMVL 432

Query: 283  PDVHMALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDIL 161
            PDV  ALQ VH              F APLP +M+RSWDIL
Sbjct: 433  PDVSKALQDVHLSSDYDFSQLASLKFDAPLPPYMKRSWDIL 473


>ref|XP_009341344.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Pyrus x
            bretschneideri]
          Length = 486

 Score =  408 bits (1049), Expect = e-111
 Identities = 209/340 (61%), Positives = 255/340 (75%), Gaps = 4/340 (1%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHS-PAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVI 986
            MN GD IHLP SV   PA++      H+ +  KQEC   ++E  +I SLELYKDP+IIVI
Sbjct: 153  MNIGDRIHLPFSVQEFPADK------HKSSNYKQECHCSEEEINFIRSLELYKDPAIIVI 206

Query: 985  NKPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATIL 806
            NKPPG+PVQGGIGIK+SLD LA+  L YD SEPPRLVHRLDRDSSG+LV+GRTQT A +L
Sbjct: 207  NKPPGMPVQGGIGIKRSLDKLATACLSYDLSEPPRLVHRLDRDSSGLLVMGRTQTIAAVL 266

Query: 805  HSIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERIT 626
            HSIFREKT  AS D TD+ KRILQ++YWALVIG+PR+  GLISAPL KV++DNGKSERIT
Sbjct: 267  HSIFREKTVGASNDVTDDAKRILQRRYWALVIGSPRQRKGLISAPLVKVVVDNGKSERIT 326

Query: 625  -VDDNRNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKY 449
              +D++ + SQHAIT+Y+++ S   G TW+EL+PLTGRKHQLRVHCAEVL TPIVGDYKY
Sbjct: 327  AANDSQTLSSQHAITKYKVIGSSCPGFTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKY 386

Query: 448  GWQAHKNWKGLPWTNPTERSAEKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDV 275
            GWQ H+NWK L  +N      E+L    +  F L+  +GSI EK P LHLHC+QM+ P+V
Sbjct: 387  GWQTHRNWKPLSSSNTESHWNEELRPRRNLPFDLNMDSGSIFEKTPRLHLHCKQMVLPNV 446

Query: 274  HMALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
            ++ALQ+V              + VAPLP++MQRSWDI NS
Sbjct: 447  YLALQNVKLHSDCDLSELESLELVAPLPSYMQRSWDITNS 486


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
            gi|550331407|gb|EEE87831.2| hypothetical protein
            POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  406 bits (1044), Expect = e-110
 Identities = 205/337 (60%), Positives = 250/337 (74%), Gaps = 3/337 (0%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVIN 983
            M+ GD I LP+SV              L  +KQ+C  +++E  +I  LELYKD +IIV+N
Sbjct: 146  MDVGDRIFLPISVKV------------LPAEKQDCHCNEEEINFIRGLELYKDAAIIVVN 193

Query: 982  KPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILH 803
            KPPG+PVQGGIGIK+SLD L+++    DYSEPPRLVHRLDRD SG+LV+GRTQTSAT+LH
Sbjct: 194  KPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLH 253

Query: 802  SIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITV 623
            +IFREKT  AS D   N +RILQ+KYWALVIG+PRR  GLISAPLGKV++DNGKS+RITV
Sbjct: 254  AIFREKTLAASNDDVGNKRRILQRKYWALVIGSPRRPKGLISAPLGKVVVDNGKSDRITV 313

Query: 622  DDN-RNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 446
             +N +N+ SQHA+T+YR+++S   G TW+ELSPLTGRKHQLRVHCAEVLGTPIVGDYKY 
Sbjct: 314  VENSQNLSSQHAVTQYRVIESS-HGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYA 372

Query: 445  WQAHKNWKGLPWTNPTERSAEK--LPKMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVH 272
            WQAH+NWK L W+N  + S +K    K+  F LD  +GSISEK P LHLHC+QM+ PDV 
Sbjct: 373  WQAHRNWKQLQWSNIEDNSNDKSLSEKILPFALDLDSGSISEKHPRLHLHCKQMVLPDVS 432

Query: 271  MALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDIL 161
             ALQ V               F APLP +M++SWDIL
Sbjct: 433  KALQDVQLSSDYDFSQLASLKFDAPLPPYMKKSWDIL 469


>ref|XP_010647894.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
            [Vitis vinifera]
          Length = 430

 Score =  404 bits (1037), Expect = e-109
 Identities = 200/290 (68%), Positives = 236/290 (81%), Gaps = 3/290 (1%)
 Frame = -1

Query: 1015 LYKDPSIIVINKPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVL 836
            L +DP+IIV+NKPPGLPVQGGIGIK+SLD LA+TYLRYD SEPPRLVHRLDRDSSG+L++
Sbjct: 141  LKRDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILIM 200

Query: 835  GRTQTSATILHSIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVI 656
            GRTQTSATILHSIFREKTF AS +  D  KRILQ++YWALVIG+PRR  GLISAPLGKV+
Sbjct: 201  GRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVV 260

Query: 655  MDNGKSERITVDDN-RNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVL 479
            +D+GKSERIT+ DN + M SQHAITEYR+++S   G TW+ELSPLTGRKHQLRVHCAEVL
Sbjct: 261  VDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSPLTGRKHQLRVHCAEVL 320

Query: 478  GTPIVGDYKYGWQAHKNWKGLPWTNPTERSAEKLP--KMPSFVLDSKTGSISEKEPHLHL 305
            GTPIVGDYKYGWQAH+ WK L  +N  +   E L   K   F LD ++GSI +K+PHLHL
Sbjct: 321  GTPIVGDYKYGWQAHRKWKQLFQSNIEKNLDENLSNRKTHPFGLDLESGSILDKQPHLHL 380

Query: 304  HCRQMIFPDVHMALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
            HC+QM+ P+V +ALQ++              +FVAPLP+HMQRSWDILNS
Sbjct: 381  HCKQMVLPNVSLALQNLQLSAECDLSELESLEFVAPLPSHMQRSWDILNS 430


>ref|XP_010096290.1| RNA pseudourine synthase 4 [Morus notabilis]
            gi|587874547|gb|EXB63685.1| RNA pseudourine synthase 4
            [Morus notabilis]
          Length = 470

 Score =  401 bits (1031), Expect = e-109
 Identities = 201/339 (59%), Positives = 247/339 (72%), Gaps = 3/339 (0%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVIN 983
            +N GD I LP+SV              L  +K+EC  +++E  +I SLELYKDP+I+V+N
Sbjct: 144  LNLGDKIFLPISVKE------------LPVEKKECFCNEEEVKFIRSLELYKDPAIVVVN 191

Query: 982  KPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILH 803
            KPPGLPVQGGIGIK SLD LA T L YDY+EPPRLVHRLDRD SG+LV+GRTQTSAT+LH
Sbjct: 192  KPPGLPVQGGIGIKTSLDQLAVTCLSYDYTEPPRLVHRLDRDCSGILVMGRTQTSATVLH 251

Query: 802  SIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERIT- 626
            SIFREKTF AS D T   K +LQ++YWA VIG+PR  +GLISAPL KV++DNGKS+RIT 
Sbjct: 252  SIFREKTFGASNDETVKGKIVLQRRYWAFVIGSPRHPNGLISAPLRKVVLDNGKSDRITV 311

Query: 625  VDDNRNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 446
            V+ +  + SQHAIT+Y+++ S   G TW+ELSPLTGRKHQLRVHCAEVLGTP+VGDYKYG
Sbjct: 312  VNGSHTLSSQHAITKYKVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPMVGDYKYG 371

Query: 445  WQAHKNWKGLPWTNPTERSAEKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDVH 272
            WQAH++WK L W +P  +  E LPK  +  F L+   GSISEK P LHLHC+QM+ P++ 
Sbjct: 372  WQAHRDWKPLHWPDPDNKCIEVLPKRKNLPFGLNMDNGSISEKHPRLHLHCKQMVLPNIS 431

Query: 271  MALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
              LQ+V                 APLP++MQRSW + NS
Sbjct: 432  HVLQNVQRYSDYELSRLERLKLDAPLPSYMQRSWHLTNS 470


>ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Citrus sinensis] gi|568867349|ref|XP_006487000.1|
            PREDICTED: RNA pseudouridine synthase 4,
            mitochondrial-like isoform X2 [Citrus sinensis]
          Length = 362

 Score =  398 bits (1023), Expect = e-108
 Identities = 198/336 (58%), Positives = 250/336 (74%), Gaps = 3/336 (0%)
 Frame = -1

Query: 1153 GDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPP 974
            GD I LP+S+     R            K++C   ++E  +I SLELYKD +IIVINKP 
Sbjct: 39   GDRIFLPISIQESPSR------------KEKCPCTEEEVEFIQSLELYKDSAIIVINKPH 86

Query: 973  GLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIF 794
            G+PVQGGIGI++S+D LA+T L YDYSEPPRLVHRLDRDSSG+LV+GRTQTSAT+LHSIF
Sbjct: 87   GMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 146

Query: 793  REKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVDDN 614
            REKTF AS +  DN K+ILQ+ YWALV+GTPR + G+ISAPLGKV++DNGKS+RITV +N
Sbjct: 147  REKTFSASKEDNDNEKKILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNN 206

Query: 613  -RNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQA 437
             + M +QHA+T Y++++    G TW++LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 
Sbjct: 207  DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 266

Query: 436  HKNWKGLPWTNPTERSAEKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDVHMAL 263
            H+ WK    ++ ++ S E++PK  +  F LD ++GSI EK+P LHLHC++M  P+V  A+
Sbjct: 267  HRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAI 326

Query: 262  QHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
            Q V                VAPLP+HMQRSWD+LNS
Sbjct: 327  QKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLNS 362


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  398 bits (1022), Expect = e-108
 Identities = 202/339 (59%), Positives = 246/339 (72%), Gaps = 3/339 (0%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVIN 983
            MN GD I LP+SV +            L  +KQ+C   +KE  +I  LELYKD +IIV+N
Sbjct: 211  MNVGDRIFLPISVQA------------LPFEKQKCHCGEKEANFIRGLELYKDEAIIVVN 258

Query: 982  KPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILH 803
            KPPG+PVQGGIGIK S D LA++ L YDYSEPPRLVHRLDRDSSG+LV+GRTQTS  +LH
Sbjct: 259  KPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRLVHRLDRDSSGILVMGRTQTSTMVLH 318

Query: 802  SIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITV 623
            S+FREKTF AS       +RILQ+KYWALVIG+PRR  G+ISAPLGKV++D+GKS+RITV
Sbjct: 319  SVFREKTFAASNHDIGERRRILQRKYWALVIGSPRRQKGIISAPLGKVVVDDGKSDRITV 378

Query: 622  DDNRNMPS-QHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 446
             +N    S QHA+T+YR+++S   G  W+ELSP+TGRKHQLRVHCAEVLGTPIVGDYKYG
Sbjct: 379  VENAESTSFQHAVTQYRVMESS-HGYAWLELSPITGRKHQLRVHCAEVLGTPIVGDYKYG 437

Query: 445  WQAHKNWKGLPWTNPTERSAEK--LPKMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVH 272
            WQ H+ WK LP+ N  + S E     K+  F +D ++GSISEK P LHLHC+QM+ PDV 
Sbjct: 438  WQVHRKWKQLPFPNLEKISNENALCKKILPFGIDLESGSISEKHPRLHLHCKQMVLPDVS 497

Query: 271  MALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
             AL+ V              +  APLP++MQRSWDILNS
Sbjct: 498  QALRGVQTSSNYDFSDLKSIELDAPLPSYMQRSWDILNS 536


>ref|XP_012075891.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha
            curcas] gi|802540331|ref|XP_012075896.1| PREDICTED: RNA
            pseudouridine synthase 4, mitochondrial [Jatropha curcas]
            gi|802540333|ref|XP_012075899.1| PREDICTED: RNA
            pseudouridine synthase 4, mitochondrial [Jatropha curcas]
            gi|802540335|ref|XP_012075905.1| PREDICTED: RNA
            pseudouridine synthase 4, mitochondrial [Jatropha curcas]
            gi|643740231|gb|KDP45903.1| hypothetical protein
            JCGZ_15463 [Jatropha curcas]
          Length = 470

 Score =  397 bits (1021), Expect = e-108
 Identities = 204/339 (60%), Positives = 251/339 (74%), Gaps = 3/339 (0%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVIN 983
            M+ GD I LP++V +            L  +KQ+   + +   +I SLELYKD  IIV+N
Sbjct: 142  MSIGDRIFLPITVQA------------LPSEKQQNVYNQEAVNFIRSLELYKDDIIIVVN 189

Query: 982  KPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILH 803
            KPPG+PVQGGIGIK+SLD LA++ L YDYSEPPRLVHRLDRDSSG+LV+GRTQTS T+LH
Sbjct: 190  KPPGIPVQGGIGIKRSLDELAASCLSYDYSEPPRLVHRLDRDSSGILVMGRTQTSTTVLH 249

Query: 802  SIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITV 623
            S+FREKTF AS D   + +RILQ+KYWALVIG+PR   GLISAPLGKV++DNGKS+RITV
Sbjct: 250  SVFREKTFAASNDDIGDRRRILQRKYWALVIGSPRCQKGLISAPLGKVLVDNGKSDRITV 309

Query: 622  DDN-RNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 446
             +N  N  SQHA+T YR+L+S  Q  TW+ELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG
Sbjct: 310  IENVHNTSSQHAVTHYRVLES-FQDYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 368

Query: 445  WQAHKNWKGLPWTNPTERSAEKLP--KMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVH 272
            WQAH+ WK L W++  +   +K+P  KM    +D ++GSISEK+P LHLHC+QM+ P+V 
Sbjct: 369  WQAHRKWKHLHWSDLEKTLHDKVPCEKMLPLGIDFESGSISEKQPRLHLHCKQMVLPNVS 428

Query: 271  MALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
             ALQ                +  APLP++MQRSWDIL+S
Sbjct: 429  QALQDAKISPDYNFSDMETIELDAPLPSYMQRSWDILSS 467


>ref|XP_007042534.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
            gi|508706469|gb|EOX98365.1| Ribosomal pseudouridine
            synthase, putative [Theobroma cacao]
          Length = 477

 Score =  394 bits (1013), Expect = e-107
 Identities = 203/339 (59%), Positives = 250/339 (73%), Gaps = 3/339 (0%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVIN 983
            +N GD I LP SV    E            +KQE    ++E  +I  LELYKDP+IIV+N
Sbjct: 151  LNIGDRIFLPFSVREFRE------------EKQESGCTEEELNFIRGLELYKDPAIIVLN 198

Query: 982  KPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILH 803
            KPPG+PVQGGIGIK SLD LA+  L +DYSEPPRLVHRLDRDSSG+LV+GRTQ SATILH
Sbjct: 199  KPPGMPVQGGIGIKWSLDKLAAACLCFDYSEPPRLVHRLDRDSSGILVMGRTQMSATILH 258

Query: 802  SIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITV 623
            S+FRE+T +AS D  DN KRILQK+YWALVIG+PRR  G+I APL KV++D+GKS+RITV
Sbjct: 259  SVFREETNDASKDDVDNEKRILQKRYWALVIGSPRRPKGMIVAPLRKVVVDDGKSDRITV 318

Query: 622  DDNRN-MPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 446
             DN   + SQ A TEY+++++   G TW+ELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG
Sbjct: 319  FDNSQIVSSQRAKTEYQVIKTTSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYG 378

Query: 445  WQAHKNWKGLPWTNPTERSAEKLPK--MPSFVLDSKTGSISEKEPHLHLHCRQMIFPDVH 272
            WQAH+ W+ LP ++  + S +K P+  M  F L+  +GSIS K P LHLHCR+MIFP+V 
Sbjct: 379  WQAHRRWQHLPESDLKKSSNDKCPEENMLPFGLNMDSGSISAKRPRLHLHCREMIFPNVS 438

Query: 271  MALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
             ALQ++              + VAPLP++MQ+SWDI+NS
Sbjct: 439  QALQNLQLSTDHDLSKLKSLEVVAPLPSYMQKSWDIMNS 477


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
            gi|557524859|gb|ESR36165.1| hypothetical protein
            CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  392 bits (1008), Expect = e-106
 Identities = 197/336 (58%), Positives = 247/336 (73%), Gaps = 3/336 (0%)
 Frame = -1

Query: 1153 GDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVINKPP 974
            GD I LP+S+     R            K++C   ++E  +I SLELYKD +IIVINKP 
Sbjct: 171  GDRIFLPISIQESPSR------------KEKCPCTEEEVGFIQSLELYKDSAIIVINKPH 218

Query: 973  GLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILHSIF 794
            G+PVQGGIGI++S+D LA+T L YDYSEPPRLVHRLDRDSSG+LV+GRTQTSAT+LHSIF
Sbjct: 219  GMPVQGGIGIRRSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIF 278

Query: 793  REKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITVDDN 614
            REKTF AS +  DN KRILQ+ YWALV+GTPR + G+ISAPL KV++DNGKS+RITV +N
Sbjct: 279  REKTFSASKEDNDNEKRILQRWYWALVVGTPRCSKGVISAPLRKVVVDNGKSDRITVVNN 338

Query: 613  -RNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQA 437
             + M +QHA+T Y++++    G TW++LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ 
Sbjct: 339  DQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQT 398

Query: 436  HKNWKGLPWTNPTERSAEKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDVHMAL 263
            H+ WK    ++  + S ++ PK  +  F LD ++GSI EK+P LHLHC++M  P+V  A+
Sbjct: 399  HRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAI 458

Query: 262  QHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
            Q V                VAPLP+HMQRSWD+LNS
Sbjct: 459  QKVQLSSGCDVSKLESLKLVAPLPSHMQRSWDVLNS 494


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum
            tuberosum]
          Length = 467

 Score =  386 bits (991), Expect = e-104
 Identities = 195/340 (57%), Positives = 245/340 (72%), Gaps = 4/340 (1%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHS-PAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVI 986
            MN GD I LP++V   P+E++         P  +E      E  ++HSLELYKDP I+V+
Sbjct: 140  MNVGDRIFLPITVQKFPSEKVV------YYPSSEE------ERKFVHSLELYKDPEIVVV 187

Query: 985  NKPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATIL 806
            NKPPG+PVQGGIGIK+SLD LA+ Y+R++YSE PRLVHRLDRD SG+LV+GRTQ SA+ L
Sbjct: 188  NKPPGMPVQGGIGIKRSLDELAAKYMRHEYSEAPRLVHRLDRDCSGLLVMGRTQLSASAL 247

Query: 805  HSIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERIT 626
            HSIFREKTF++  +  ++ KRILQKKYWALVIG PRR+ G+ISAPLGK+++DNGKSERIT
Sbjct: 248  HSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRRSGGIISAPLGKLVLDNGKSERIT 307

Query: 625  VDDNRNMPS-QHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKY 449
            +  +   PS Q+A+TEYR++ S  +G TW+ELSPLTGRKHQLRVHCAE LGTPIVGDYKY
Sbjct: 308  IMSDVRAPSAQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCAEALGTPIVGDYKY 367

Query: 448  GWQAHKNWKGLPWTNPTERSAEKLP--KMPSFVLDSKTGSISEKEPHLHLHCRQMIFPDV 275
            GWQAH+  K LP          ++P  K   F L    GSIS+K+PHLHLHC++M+ P++
Sbjct: 368  GWQAHRKLKHLPLPTSVLNLGVQIPRQKPDPFNLRLGNGSISDKQPHLHLHCKEMVLPNI 427

Query: 274  HMALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
             +ALQ                  VAPLP HMQ+SWD L+S
Sbjct: 428  SLALQRAQVVSDTDLVDVESIKLVAPLPFHMQKSWDCLSS 467


>ref|XP_012450617.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Gossypium
            raimondii] gi|763744841|gb|KJB12280.1| hypothetical
            protein B456_002G009500 [Gossypium raimondii]
          Length = 479

 Score =  384 bits (987), Expect = e-104
 Identities = 199/340 (58%), Positives = 245/340 (72%), Gaps = 4/340 (1%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHSPAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVIN 983
            +N GD I LP+SV    E            +K E    D+E  +I SLELYKD +IIV+N
Sbjct: 152  LNIGDKIFLPISVREVPE------------EKHEHDCTDEESNFIRSLELYKDTAIIVLN 199

Query: 982  KPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATILH 803
            KPPG+PVQGGIGIK SLD LA+ +LRYDYSE PRLVHRLDRD SG+LV+GRTQ SA ILH
Sbjct: 200  KPPGMPVQGGIGIKWSLDELAAAWLRYDYSESPRLVHRLDRDCSGILVMGRTQMSAAILH 259

Query: 802  SIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERITV 623
            S+FRE+T  AS   +DN KR+LQK+YWALVIG+PRR  G ISAPL KV++D+GKS+RITV
Sbjct: 260  SVFREETLGASKHDSDNEKRVLQKRYWALVIGSPRRPKGTISAPLRKVVVDDGKSDRITV 319

Query: 622  DDNRN--MPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKY 449
             ++ N  + SQ AITEYR++++   G TW+ELSPLTGRKHQLRVHCAEVLGTPIVGDYKY
Sbjct: 320  FEHNNTILSSQRAITEYRVIKTSTHGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKY 379

Query: 448  GWQAHKNWKGLPWTNPTERSAEKLPK--MPSFVLDSKTGSISEKEPHLHLHCRQMIFPDV 275
            GWQAH+ ++ L  ++  + S EK+ K  M  F L+  +GSISEK   LHLHCR+MI P+V
Sbjct: 380  GWQAHRRFQNLAESDLRKNSNEKVAKENMLPFGLNMDSGSISEKHLRLHLHCREMILPNV 439

Query: 274  HMALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
               L++                 VAPLP++MQ+SWDILNS
Sbjct: 440  SQVLRNPKSFTDDDLSKLKSLKIVAPLPSYMQKSWDILNS 479


>ref|XP_009805028.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
            [Nicotiana sylvestris]
          Length = 481

 Score =  382 bits (980), Expect = e-103
 Identities = 192/340 (56%), Positives = 243/340 (71%), Gaps = 4/340 (1%)
 Frame = -1

Query: 1162 MNWGDTIHLPVSVHS-PAERINSRDGHRLTPDKQECRIDDKEGTYIHSLELYKDPSIIVI 986
            MN GD I LP++V   P++++         P  +E      E  ++HSLELYKDP IIV+
Sbjct: 154  MNIGDRIFLPITVQKFPSDKVEDY------PSSEE------EMKFLHSLELYKDPEIIVL 201

Query: 985  NKPPGLPVQGGIGIKQSLDALASTYLRYDYSEPPRLVHRLDRDSSGVLVLGRTQTSATIL 806
            NKPPGLPVQGGIGIK+SLD LA+ Y++Y+YSE PRLVHRLDRD SG+LV+GRTQ SA++L
Sbjct: 202  NKPPGLPVQGGIGIKRSLDELAAKYMKYEYSEAPRLVHRLDRDCSGILVMGRTQLSASVL 261

Query: 805  HSIFREKTFEASADATDNTKRILQKKYWALVIGTPRRASGLISAPLGKVIMDNGKSERIT 626
            HS+FREKTF    +  ++ KR+LQK+YWALVIG PRR+ GLIS PLGKV++DNGKSERIT
Sbjct: 262  HSVFREKTFGTQTEDLESKKRVLQKRYWALVIGCPRRSKGLISVPLGKVVLDNGKSERIT 321

Query: 625  V-DDNRNMPSQHAITEYRLLQSPIQGLTWIELSPLTGRKHQLRVHCAEVLGTPIVGDYKY 449
            +  D R   +Q A+TEYR++ S  +G TW+ELSPLTGRKHQLRVHCAEVLGTPIVGDYKY
Sbjct: 322  IMSDVREPSAQFAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKY 381

Query: 448  GWQAHKNWKGLPWTNPTERSAEKLPKMPS--FVLDSKTGSISEKEPHLHLHCRQMIFPDV 275
            GWQAH+  K L  +        ++ +  +  F L    GSIS+K+PHLHLHC++M+ P+ 
Sbjct: 382  GWQAHRKLKHLSSSTSIVNLGARILEQEADPFSLRLGNGSISDKQPHLHLHCKEMVLPNF 441

Query: 274  HMALQHVHXXXXXXXXXXXXXDFVAPLPAHMQRSWDILNS 155
             +ALQ                  VAPLP+HMQ+SWD L+S
Sbjct: 442  SLALQQARVVSGADLVHVESIKLVAPLPSHMQKSWDCLSS 481