BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver31_contig00028677
         (2303 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010251347.1| PREDICTED: RNA-binding motif protein, X chro...   287   3e-74
ref|XP_007044902.1| RNA-binding family protein isoform 1 [Theobr...   285   2e-73
ref|XP_008389755.1| PREDICTED: RNA-binding protein FUS-like [Mal...   281   2e-72
ref|XP_010650880.1| PREDICTED: cleavage and polyadenylation spec...   280   5e-72
ref|XP_002282072.3| PREDICTED: cleavage and polyadenylation spec...   280   5e-72
ref|XP_012459070.1| PREDICTED: cleavage and polyadenylation spec...   278   2e-71
ref|XP_008221952.1| PREDICTED: cleavage and polyadenylation spec...   276   5e-71
ref|XP_012085551.1| PREDICTED: cleavage and polyadenylation spec...   276   5e-71
gb|KHG22501.1| Cleavage and polyadenylation specificity factor s...   276   6e-71
ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citr...   274   2e-70
ref|XP_008340137.1| PREDICTED: cleavage and polyadenylation spec...   272   9e-70
ref|XP_002312652.1| RNA recognition motif-containing family prot...   272   9e-70
ref|XP_009780918.1| PREDICTED: cleavage and polyadenylation spec...   271   2e-69
ref|XP_007044909.1| RNA-binding family protein isoform 6 [Theobr...   271   3e-69
ref|XP_007044908.1| RNA-binding family protein isoform 5, partia...   271   3e-69
ref|XP_007044907.1| RNA-binding family protein isoform 4 [Theobr...   271   3e-69
ref|XP_007044904.1| RNA-binding family protein isoform 1 [Theobr...   271   3e-69
ref|XP_009359255.1| PREDICTED: cleavage and polyadenylation spec...   270   3e-69
ref|XP_007225677.1| hypothetical protein PRUPE_ppa002814mg [Prun...   270   6e-69
ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation spec...   268   1e-68

>ref|XP_010251347.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Nelumbo
            nucifera]
          Length = 599

 Score =  287 bits (735), Expect = 3e-74
 Identities = 164/291 (56%), Positives = 185/291 (63%), Gaps = 2/291 (0%)
 Frame = -2

Query: 2278 QVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNRVPGNVN- 2102
            Q GN+GF+GSA  PPK GADP+Q   KF+G +  LPD GT    +A QM  NR+  NVN 
Sbjct: 156  QGGNLGFRGSAPIPPKVGADPSQXSGKFAGESSSLPDSGTAGPXSAPQMPSNRMNMNVNM 215

Query: 2101 -RPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSK 1925
             RP+ ++N  R AV+NGTTM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERASGKSK
Sbjct: 216  NRPMXNENMNRXAVENGTTMLFVGELHWWTTDAELEXVLSQYGRVKEIKFFDERASGKSK 275

Query: 1924 GYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQ 1745
            GYCQVEFY+  AAAACKEGM G +FNGRACVVAFAS Q+LKQMGAAYLNK Q+Q+Q+QPQ
Sbjct: 276  GYCQVEFYDPAAAAACKEGMXGHVFNGRACVVAFASXQTLKQMGAAYLNKTQMQSQSQPQ 335

Query: 1744 GRRVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXXX 1565
            GRR  ND G GRG G N PAG      RN+ K                            
Sbjct: 336  GRRFMND-GVGRGGGMNHPAG---EVARNYGKXPWGRGGHGMINRGPGGGAXRGRGGAIG 391

Query: 1564 AKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPT 1412
            AK M+              PY Q                PQ MMGAGFDPT
Sbjct: 392  AKGMV-GSTGGIGTGATGGPYXQALXGPALAGPAGAMMHPQGMMGAGFDPT 441



 Score = 62.4 bits (150), Expect = 2e-06
 Identities = 28/37 (75%), Positives = 34/37 (91%)
 Frame = -2

Query: 883 GQSSSRSRSKTHMMQEDDHRSRSRDGDYGKRRRLPSE 773
           GQ+SSRS SK+ MMQE+++RSRSR+ DYGKRRRLPSE
Sbjct: 563 GQNSSRSXSKSRMMQEEEYRSRSRBADYGKRRRLPSE 599


>ref|XP_007044902.1| RNA-binding family protein isoform 1 [Theobroma cacao]
            gi|590695488|ref|XP_007044903.1| RNA-binding family
            protein isoform 1 [Theobroma cacao]
            gi|508708837|gb|EOY00734.1| RNA-binding family protein
            isoform 1 [Theobroma cacao] gi|508708838|gb|EOY00735.1|
            RNA-binding family protein isoform 1 [Theobroma cacao]
          Length = 653

 Score =  285 bits (728), Expect = 2e-73
 Identities = 161/334 (48%), Positives = 192/334 (57%)
 Frame = -2

Query: 2278 QVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNRVPGNVNR 2099
            QV NMGFQG ++A  K G DP+ +P K +       + GT   + A  +  N++  NVN 
Sbjct: 155  QVKNMGFQGLSSASHKVGIDPSGVPQKIANVPAQSLNSGTGGPQGAPHVPPNQMGLNVNH 214

Query: 2098 PIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGY 1919
            P++S+N +RP ++NG TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERASGKSKGY
Sbjct: 215  PMISENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGY 274

Query: 1918 CQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQGR 1739
            CQVEFY+  +AAACKEGM G++FNGRACVVAFASPQ+LKQMGA+Y+NK Q Q+QAQPQGR
Sbjct: 275  CQVEFYDPASAAACKEGMDGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGR 334

Query: 1738 RVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXAK 1559
            R PND G GRG   N+ +G     GRN+ +                             K
Sbjct: 335  R-PND-GLGRGGNMNYQSG---DAGRNYGR-GGWGRGGQGVVNRSGVGGPMRGRGGVGVK 388

Query: 1558 NMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXXXXX 1379
            NM+               Y Q                PQ MMGAGFDPT           
Sbjct: 389  NMVGSSAGVGNGANGGAAYGQGPAGPPFGGPAGGMMHPQGMMGAGFDPTYMGRGGSYGGF 448

Query: 1378 XXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGR 1277
                              GL GVAPHVNPAFFGR
Sbjct: 449  PGPGFPGMLPSFPAVNTLGLAGVAPHVNPAFFGR 482



 Score = 60.1 bits (144), Expect = 9e-06
 Identities = 31/56 (55%), Positives = 36/56 (64%)
 Frame = -2

Query: 940 HRDHXXXXXXXXXXXXXXRGQSSSRSRSKTHMMQEDDHRSRSRDGDYGKRRRLPSE 773
           +R+H              RGQSSSRSR ++H M E+  RSRSRD DYGKRRRLPSE
Sbjct: 598 YREHRHRERDLDYDDDLDRGQSSSRSRRRSHAMPEEQRRSRSRDVDYGKRRRLPSE 653


>ref|XP_008389755.1| PREDICTED: RNA-binding protein FUS-like [Malus domestica]
            gi|657994880|ref|XP_008389756.1| PREDICTED: RNA-binding
            protein FUS-like [Malus domestica]
          Length = 658

 Score =  281 bits (718), Expect = 2e-72
 Identities = 171/363 (47%), Positives = 200/363 (55%), Gaps = 4/363 (1%)
 Frame = -2

Query: 2296 EIVAAPQVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLP--DPGTDALRNAQQMQVN 2123
            E+    QV  MGFQGS T PP  G D + +  K  G +  +P  +PGT     A Q+  N
Sbjct: 149  EMTHDTQVRQMGFQGSTTIPPNVGIDSSDITGK--GNSEYIPSLNPGTAGPPGAAQIPTN 206

Query: 2122 R--VPGNVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFD 1949
            +  +  N NRP+V++N IRP ++NG+ M+FVG+LHWWTTDAE+E  LSQYGRVKEIKFFD
Sbjct: 207  QMSIKINANRPMVNENQIRPPIENGSAMLFVGELHWWTTDAEIESXLSQYGRVKEIKFFD 266

Query: 1948 ERASGKSKGYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQ 1769
            ERASGKSKGYCQVEF++  AA ACKEGM G++FNGRACVVAFASPQ+LKQMGA+YL+K+Q
Sbjct: 267  ERASGKSKGYCQVEFHDPAAATACKEGMDGYVFNGRACVVAFASPQTLKQMGASYLSKSQ 326

Query: 1768 VQAQAQPQGRRVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXX 1589
             QAQAQ  GRR  ND G GRGAG NF   AGDTGGRNF +                    
Sbjct: 327  XQAQAQQPGRRPMND-GVGRGAGVNFQ--AGDTGGRNFGR-GGWGRGGQGGRGPGGGGPM 382

Query: 1588 XXXXXXXXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTX 1409
                     KNM+               Y Q                PQ MMG+GFDPT 
Sbjct: 383  RGRGGAMGVKNMVGNPAGVGTGANGGG-YGQ-GLGGPGFGGPVGMMNPQGMMGSGFDPTY 440

Query: 1408 XXXXXXXXXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXME 1229
                                        GL GVAPHVNPAFFGR              ME
Sbjct: 441  MGRGGGYGGFPGPAFPGMLPQFPGVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGSSGME 500

Query: 1228 AHH 1220
             HH
Sbjct: 501  GHH 503


>ref|XP_010650880.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            CG7185 isoform X2 [Vitis vinifera]
            gi|731372808|ref|XP_010650883.1| PREDICTED: cleavage and
            polyadenylation specificity factor subunit CG7185 isoform
            X2 [Vitis vinifera] gi|731372811|ref|XP_010650886.1|
            PREDICTED: cleavage and polyadenylation specificity
            factor subunit CG7185 isoform X2 [Vitis vinifera]
          Length = 650

 Score =  280 bits (715), Expect = 5e-72
 Identities = 170/362 (46%), Positives = 200/362 (55%), Gaps = 3/362 (0%)
 Frame = -2

Query: 2296 EIVAAPQVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNRV 2117
            E+    QV N+GFQGS   P K GA+P+ +  K +  +  + + GT   R   QM  N++
Sbjct: 148  EMTHDTQVRNLGFQGSTPIPQKTGAEPSDVHGKIANESTPVLNSGTGGPRAVPQMLSNQM 207

Query: 2116 PGNVN--RPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDER 1943
              NVN  RP+V++N IRPAVDNG TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDER
Sbjct: 208  GMNVNVNRPMVNENQIRPAVDNGATMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDER 267

Query: 1942 ASGKSKGYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQ 1763
            ASGKSKGYCQVEFY++ AAAACKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK   Q
Sbjct: 268  ASGKSKGYCQVEFYDASAAAACKEGMNGYIFNGRACVVAFASPQTLKQMGASYMNK--TQ 325

Query: 1762 AQAQPQGRRVPNDGGSGRGAGANFPAGAGDTGGRNFNK-VXXXXXXXXXXXXXXXXXXXX 1586
            AQ+Q QGRR  ND G GRG G N   G     GRN+ +                      
Sbjct: 326  AQSQSQGRRPMND-GVGRGGGMNMQGG---DAGRNYGRGGWGRGGQGILNRGPGGGGPMR 381

Query: 1585 XXXXXXXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXX 1406
                   AKNM+               Y Q                PQ MMG+GFDPT  
Sbjct: 382  GRGGAVGAKNMV---GNTAGVGASGGGYGQGLAGPTFGGPAGGLMHPQGMMGSGFDPTYM 438

Query: 1405 XXXXXXXXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEA 1226
                                       GL GVAPHVNPAFFGR              M+ 
Sbjct: 439  GRGGAYGGFSGSAFPGMVPSFPAVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGATGMDG 498

Query: 1225 HH 1220
            HH
Sbjct: 499  HH 500



 Score = 68.9 bits (167), Expect = 2e-08
 Identities = 34/57 (59%), Positives = 40/57 (70%)
 Frame = -2

Query: 943 GHRDHXXXXXXXXXXXXXXRGQSSSRSRSKTHMMQEDDHRSRSRDGDYGKRRRLPSE 773
           G+RDH              RGQSSSRSRS++  + ++DHRSRSRDGDYGKRRRLPSE
Sbjct: 594 GYRDHRQRERDFNNEDDWDRGQSSSRSRSRSRAVADEDHRSRSRDGDYGKRRRLPSE 650


>ref|XP_002282072.3| PREDICTED: cleavage and polyadenylation specificity factor subunit 6
            isoform X1 [Vitis vinifera]
          Length = 656

 Score =  280 bits (715), Expect = 5e-72
 Identities = 170/362 (46%), Positives = 200/362 (55%), Gaps = 3/362 (0%)
 Frame = -2

Query: 2296 EIVAAPQVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNRV 2117
            E+    QV N+GFQGS   P K GA+P+ +  K +  +  + + GT   R   QM  N++
Sbjct: 154  EMTHDTQVRNLGFQGSTPIPQKTGAEPSDVHGKIANESTPVLNSGTGGPRAVPQMLSNQM 213

Query: 2116 PGNVN--RPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDER 1943
              NVN  RP+V++N IRPAVDNG TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDER
Sbjct: 214  GMNVNVNRPMVNENQIRPAVDNGATMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDER 273

Query: 1942 ASGKSKGYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQ 1763
            ASGKSKGYCQVEFY++ AAAACKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK   Q
Sbjct: 274  ASGKSKGYCQVEFYDASAAAACKEGMNGYIFNGRACVVAFASPQTLKQMGASYMNK--TQ 331

Query: 1762 AQAQPQGRRVPNDGGSGRGAGANFPAGAGDTGGRNFNK-VXXXXXXXXXXXXXXXXXXXX 1586
            AQ+Q QGRR  ND G GRG G N   G     GRN+ +                      
Sbjct: 332  AQSQSQGRRPMND-GVGRGGGMNMQGG---DAGRNYGRGGWGRGGQGILNRGPGGGGPMR 387

Query: 1585 XXXXXXXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXX 1406
                   AKNM+               Y Q                PQ MMG+GFDPT  
Sbjct: 388  GRGGAVGAKNMV---GNTAGVGASGGGYGQGLAGPTFGGPAGGLMHPQGMMGSGFDPTYM 444

Query: 1405 XXXXXXXXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEA 1226
                                       GL GVAPHVNPAFFGR              M+ 
Sbjct: 445  GRGGAYGGFSGSAFPGMVPSFPAVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGATGMDG 504

Query: 1225 HH 1220
            HH
Sbjct: 505  HH 506



 Score = 68.9 bits (167), Expect = 2e-08
 Identities = 34/57 (59%), Positives = 40/57 (70%)
 Frame = -2

Query: 943 GHRDHXXXXXXXXXXXXXXRGQSSSRSRSKTHMMQEDDHRSRSRDGDYGKRRRLPSE 773
           G+RDH              RGQSSSRSRS++  + ++DHRSRSRDGDYGKRRRLPSE
Sbjct: 600 GYRDHRQRERDFNNEDDWDRGQSSSRSRSRSRAVADEDHRSRSRDGDYGKRRRLPSE 656


>ref|XP_012459070.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            CG7185 [Gossypium raimondii]
            gi|823252908|ref|XP_012459071.1| PREDICTED: cleavage and
            polyadenylation specificity factor subunit CG7185
            [Gossypium raimondii] gi|763811133|gb|KJB78035.1|
            hypothetical protein B456_012G173800 [Gossypium
            raimondii]
          Length = 648

 Score =  278 bits (711), Expect = 2e-71
 Identities = 158/334 (47%), Positives = 190/334 (56%)
 Frame = -2

Query: 2278 QVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNRVPGNVNR 2099
            QV NMGFQG  +A  K G  P+ +P K +       + GT   + A Q+  N++  NVN 
Sbjct: 151  QVKNMGFQGLTSASSKVGTGPSVVPQKIANNPAQSLNSGTGGPQGASQVPPNQMGMNVNH 210

Query: 2098 PIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGY 1919
            P++++N +RP ++NG TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERASGKSKGY
Sbjct: 211  PMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGY 270

Query: 1918 CQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQGR 1739
            CQVEFY+S +AAACKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK Q Q Q QPQGR
Sbjct: 271  CQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGR 330

Query: 1738 RVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXAK 1559
            R PN+ G G+G   N+  G     GRN+ +                             K
Sbjct: 331  R-PNE-GFGKGGNMNYQGG---DAGRNYGR--GGWGRGGQAGNRGGGGGPMRGRGGVGVK 383

Query: 1558 NMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXXXXX 1379
            NM+            A  Y                  PQ MMGAGFDPT           
Sbjct: 384  NMVGSSAGVGNGAYGAGAYGPGPGGPAFGGPAGGMMHPQGMMGAGFDPTYMGRGGGYGGF 443

Query: 1378 XXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGR 1277
                              GL GVAPHVNPAFFGR
Sbjct: 444  PGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGR 477



 Score = 62.0 bits (149), Expect = 2e-06
 Identities = 30/56 (53%), Positives = 39/56 (69%)
 Frame = -2

Query: 940 HRDHXXXXXXXXXXXXXXRGQSSSRSRSKTHMMQEDDHRSRSRDGDYGKRRRLPSE 773
           +R+H              RGQSSSRSR+++H  +E++HRSRSRD DYGK+RRLPSE
Sbjct: 593 YREHRHRGRDVDYDDDWDRGQSSSRSRNRSHATREEEHRSRSRDVDYGKKRRLPSE 648


>ref|XP_008221952.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            CG7185 [Prunus mume]
          Length = 647

 Score =  276 bits (707), Expect = 5e-71
 Identities = 165/356 (46%), Positives = 193/356 (54%), Gaps = 3/356 (0%)
 Frame = -2

Query: 2278 QVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNRVP--GNV 2105
            QV +MGFQGS T PP  G D + +  K +  +    + GT       QM  N++    N 
Sbjct: 156  QVRHMGFQGSTTMPPNIGGDSSDITGKTALESVPSMNSGTAGPTGVTQMPTNQISIKVNA 215

Query: 2104 NRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSK 1925
            NRP+ ++N +RP V+NG+TM+FVG+LHWWTTD+ELE VLSQYGRVKEIKFFDERASGKSK
Sbjct: 216  NRPMFNENQVRPTVENGSTMLFVGELHWWTTDSELESVLSQYGRVKEIKFFDERASGKSK 275

Query: 1924 GYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQ 1745
            GYCQVEF++  AA ACKEGM G+LFNGRACVVAFASPQ+LKQMGA+YL+K+Q Q Q+Q  
Sbjct: 276  GYCQVEFHDPAAATACKEGMDGYLFNGRACVVAFASPQTLKQMGASYLSKSQGQTQSQQP 335

Query: 1744 GRRVPNDGGSGRGAGANFPAGAGDTGGRNFNK-VXXXXXXXXXXXXXXXXXXXXXXXXXX 1568
            GRR  ND G GRG G N+    GDTGGRNF +                            
Sbjct: 336  GRRPMND-GVGRGGGVNYQ--TGDTGGRNFGRGGWGRGGQGVANRGPGGGGPMRGRGGAM 392

Query: 1567 XAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXX 1388
             AKNM                Y Q                PQ MMGAGFDPT        
Sbjct: 393  GAKNM--AGNPAGVGTGANGGYGQGLAGPGFGGPVGGMMNPQGMMGAGFDPTYMGRGGGY 450

Query: 1387 XXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHH 1220
                                 GL GVAPHVNPAFFGR              M+ HH
Sbjct: 451  GGFPGPAFPGMLSSFPAVNTMGLAGVAPHVNPAFFGRGMATNGMGMMGSSGMDGHH 506



 Score = 65.1 bits (157), Expect = 3e-07
 Identities = 34/56 (60%), Positives = 37/56 (66%)
 Frame = -2

Query: 940 HRDHXXXXXXXXXXXXXXRGQSSSRSRSKTHMMQEDDHRSRSRDGDYGKRRRLPSE 773
           +RDH              RGQSSSR RS++  M EDDHRSRSRD DYGKRRRLPSE
Sbjct: 592 YRDHRQRERDVGYEDDWDRGQSSSRPRSRSKAMPEDDHRSRSRDVDYGKRRRLPSE 647


>ref|XP_012085551.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            6-like [Jatropha curcas] gi|802723892|ref|XP_012085552.1|
            PREDICTED: cleavage and polyadenylation specificity
            factor subunit 6-like [Jatropha curcas]
            gi|802723894|ref|XP_012085553.1| PREDICTED: cleavage and
            polyadenylation specificity factor subunit 6-like
            [Jatropha curcas] gi|643714049|gb|KDP26714.1|
            hypothetical protein JCGZ_17872 [Jatropha curcas]
          Length = 656

 Score =  276 bits (707), Expect = 5e-71
 Identities = 159/342 (46%), Positives = 190/342 (55%), Gaps = 2/342 (0%)
 Frame = -2

Query: 2296 EIVAAPQVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNRV 2117
            E+    Q  N+GF GS++ P   G DP+ M  K +     +P+      R   Q+  N++
Sbjct: 144  EMTHDAQARNIGFHGSSSVPSNIGVDPSDMSRKTANEPAPVPNTAATGPRGMPQLPGNQI 203

Query: 2116 PGN--VNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDER 1943
              N  VNRP V++N IRP V+NG+T++FVG+LHWWTTDAELE VLSQYGRVKEIKFFDER
Sbjct: 204  SINMDVNRPTVNENQIRPPVENGSTVLFVGELHWWTTDAELESVLSQYGRVKEIKFFDER 263

Query: 1942 ASGKSKGYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQ 1763
            ASGKSKG+CQVEFY++ AAAACKEGM+G +FNGR CVVAFASPQ+LKQMGA+Y+NK Q Q
Sbjct: 264  ASGKSKGFCQVEFYDAAAAAACKEGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKTQGQ 323

Query: 1762 AQAQPQGRRVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXX 1583
            +Q Q QGRR  ND G+GRG   N+  G     GRNF +                      
Sbjct: 324  SQTQNQGRRPMND-GAGRGDNMNYQGG---DAGRNFGRGGWGRGGQGMMNRGPGGGGPMR 379

Query: 1582 XXXXXXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXX 1403
                   KNM+               Y Q                PQNMMGAGFDPT   
Sbjct: 380  GRGAMGPKNMIGGAGGVGSGANGGG-YGQGLVGPAFGGLAGGMMPPQNMMGAGFDPTYMG 438

Query: 1402 XXXXXXXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGR 1277
                                      GL GVAPHVNPAFFGR
Sbjct: 439  RGAAYGGFAGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFGR 480


>gb|KHG22501.1| Cleavage and polyadenylation specificity factor subunit [Gossypium
            arboreum]
          Length = 648

 Score =  276 bits (706), Expect = 6e-71
 Identities = 157/334 (47%), Positives = 190/334 (56%)
 Frame = -2

Query: 2278 QVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNRVPGNVNR 2099
            QV NMGFQG  +A  K G  P+ +P K +       + GT   + A Q+  N++  NVN 
Sbjct: 151  QVKNMGFQGLTSASSKVGTGPSVVPQKIANNPAQSLNSGTGGPQGASQVPPNQMGMNVNH 210

Query: 2098 PIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSKGY 1919
            P++++N +RP ++NG TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERASGKSKGY
Sbjct: 211  PMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGY 270

Query: 1918 CQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQGR 1739
            CQVEFY+S +AAACKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK Q Q Q QPQGR
Sbjct: 271  CQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGR 330

Query: 1738 RVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXAK 1559
            R PN+ G G+G   N+  G     GRN+ +                             K
Sbjct: 331  R-PNE-GFGKGGNMNYQGG---DAGRNYGR--GGWGRGGQAGNRGGGGGPMRGRGGVGVK 383

Query: 1558 NMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXXXXX 1379
            +M+            A  Y                  PQ MMGAGFDPT           
Sbjct: 384  SMVGSSAGVGNGGYGAGAYGPGPGGPAFGGPAGGMMHPQGMMGAGFDPTYMGRGGGYGGF 443

Query: 1378 XXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGR 1277
                              GL GVAPHVNPAFFGR
Sbjct: 444  PGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGR 477



 Score = 62.0 bits (149), Expect = 2e-06
 Identities = 30/56 (53%), Positives = 39/56 (69%)
 Frame = -2

Query: 940 HRDHXXXXXXXXXXXXXXRGQSSSRSRSKTHMMQEDDHRSRSRDGDYGKRRRLPSE 773
           +R+H              RGQSSSRSR+++H  +E++HRSRSRD DYGK+RRLPSE
Sbjct: 593 YREHRHRGRDLDYDDDWDRGQSSSRSRNRSHATREEEHRSRSRDVDYGKKRRLPSE 648


>ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citrus clementina]
            gi|557540375|gb|ESR51419.1| hypothetical protein
            CICLE_v10030915mg [Citrus clementina]
          Length = 658

 Score =  274 bits (701), Expect = 2e-70
 Identities = 166/339 (48%), Positives = 193/339 (56%), Gaps = 6/339 (1%)
 Frame = -2

Query: 2275 VGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGT----DALRNAQQMQVNRVPGN 2108
            V NMGFQGS + PP+ G DP+ MP + +     + +PG      AL  A QM VN    N
Sbjct: 157  VRNMGFQGSTSGPPRTGVDPSNMPGRVANEPAPVLNPGAAGPQGALIPANQMGVNI---N 213

Query: 2107 VNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKS 1928
            VNR +V++N IRP ++NG TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERASGKS
Sbjct: 214  VNRAMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKS 273

Query: 1927 KGYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQP 1748
            KGYCQVEF+++ AAAACK+GM+G +FNGR CVVAFASPQ+LKQMGA+Y+NK Q Q Q+Q 
Sbjct: 274  KGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQT 333

Query: 1747 QGRRVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXX 1568
            QGRR  NDGG GRG   N+ +G    GGRNF +                           
Sbjct: 334  QGRRPMNDGG-GRGGNMNYQSG---DGGRNFGR-GGWGRGGQGVPNRGPGGGAMRGRGPM 388

Query: 1567 XAKNMM--XXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXX 1394
             AKNMM                 Y Q                PQNMMG GFDPT      
Sbjct: 389  GAKNMMGSSSGAGSGAGPAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYMGRGG 447

Query: 1393 XXXXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGR 1277
                                   GL GVAPHVNPAFF R
Sbjct: 448  GYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNR 486


>ref|XP_008340137.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            6-like [Malus domestica]
          Length = 656

 Score =  272 bits (696), Expect = 9e-70
 Identities = 166/363 (45%), Positives = 199/363 (54%), Gaps = 4/363 (1%)
 Frame = -2

Query: 2296 EIVAAPQVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLP--DPGTDALRNAQQMQVN 2123
            E+   PQV +M FQGS T PP  G D + +  K  G +  +P  +P +     A Q+  N
Sbjct: 149  EMTHDPQVRHMAFQGSTTMPPNVGVDSSDITGK--GNSEFVPSLNPASAGPPGATQILTN 206

Query: 2122 R--VPGNVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFD 1949
            +  +  N NRP+V++N IRP ++NG+  +FVG+LHWWTTDAE+E V+SQYGRVKEIKFFD
Sbjct: 207  QMSIKINANRPMVNENQIRPPIENGSATLFVGELHWWTTDAEIESVISQYGRVKEIKFFD 266

Query: 1948 ERASGKSKGYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQ 1769
            ERASGKSKGYCQVEF++  AA ACKEGM G++FNGRACV A+ASPQ+LKQMGA+YL+K+Q
Sbjct: 267  ERASGKSKGYCQVEFHDQAAATACKEGMDGYVFNGRACVXAYASPQTLKQMGASYLSKSQ 326

Query: 1768 VQAQAQPQGRRVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXX 1589
             QAQAQ  GRR  NDGG GRG G NF   AGD GGRNF +                    
Sbjct: 327  GQAQAQQPGRRPMNDGG-GRGXGVNFQ--AGDPGGRNFGR-GGWGRGGQGVRGPGGGGPM 382

Query: 1588 XXXXXXXXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTX 1409
                    AKNM+               Y Q                PQ MMG+GFDPT 
Sbjct: 383  RGRGGVMGAKNMVGNPAGVGTGANGGG-YGQ-GLGGPGFGGPVGMMNPQGMMGSGFDPTY 440

Query: 1408 XXXXXXXXXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXME 1229
                                        GL GVAPHVNPAFFGR              ME
Sbjct: 441  MGRGGGYGGFPGPAFPGMLPQFPGVNTMGLAGVAPHVNPAFFGRGMATNGMGMMGSSGME 500

Query: 1228 AHH 1220
             HH
Sbjct: 501  GHH 503


>ref|XP_002312652.1| RNA recognition motif-containing family protein [Populus trichocarpa]
            gi|222852472|gb|EEE90019.1| RNA recognition
            motif-containing family protein [Populus trichocarpa]
          Length = 619

 Score =  272 bits (696), Expect = 9e-70
 Identities = 159/336 (47%), Positives = 187/336 (55%), Gaps = 2/336 (0%)
 Frame = -2

Query: 2278 QVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNRV--PGNV 2105
            QV NMGFQ S   PP  G DP+ M  K +     LP  G+   R A QMQVN++    +V
Sbjct: 139  QVRNMGFQKSTPVPPGIGVDPSDMSRKNAIEPEPLPITGSAGPRGAPQMQVNQMHMSADV 198

Query: 2104 NRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKSK 1925
            NRP+V++N +RP ++NG+T ++VG+LHWWTTDAELE   SQ+GRVKEIKFFDERASGKSK
Sbjct: 199  NRPVVNENQVRPPIENGSTTLYVGELHWWTTDAELESFASQFGRVKEIKFFDERASGKSK 258

Query: 1924 GYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQPQ 1745
            GYCQV+FYE+ AAAACKEGM+G +FNGR CVVAFASPQ+LKQMGA+Y+NK Q Q Q Q Q
Sbjct: 259  GYCQVDFYEAAAAAACKEGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKTQGQPQTQSQ 318

Query: 1744 GRRVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXXX 1565
            GR   ND G+GRG  ANF +G    GGRN+ +                            
Sbjct: 319  GRGSMND-GAGRGGNANFQSG---DGGRNYGR-GAWGRGGQGILNRGPGGGPMRGRGAMG 373

Query: 1564 AKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXXXX 1385
             KNM                Y Q                PQ MMGAGFDP          
Sbjct: 374  PKNMAGNVAGVGSGANGGG-YGQGLAGPAFGGPAGGMMPPQGMMGAGFDPLYMGRGGGYG 432

Query: 1384 XXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGR 1277
                                GL GVAPHVNPAFF R
Sbjct: 433  GFAGPGFPGMLPSFPAVNSMGLAGVAPHVNPAFFAR 468


>ref|XP_009780918.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 6
            [Nicotiana sylvestris]
          Length = 648

 Score =  271 bits (693), Expect = 2e-69
 Identities = 158/338 (46%), Positives = 188/338 (55%), Gaps = 4/338 (1%)
 Frame = -2

Query: 2278 QVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNRVPG---- 2111
            QVGN G+QGS     K GADP  MP K +     L + G    R   QM  N++      
Sbjct: 151  QVGNSGYQGSIQTTQKIGADPINMPEKNANEATPLVNSGVGGSRVVTQMPTNQLSSSGNV 210

Query: 2110 NVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGK 1931
            N+N PI+S+ PIRP+++NG TM+FVG+LHWWTTDAE+E VL+QYG VKEIKFFDERASGK
Sbjct: 211  NINSPIISETPIRPSLENGNTMLFVGELHWWTTDAEIESVLTQYGNVKEIKFFDERASGK 270

Query: 1930 SKGYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQ 1751
            SKGYCQVEF++  AAA+CKEGM+G +FNGRACVVAFA+PQ++KQMG++Y+NK Q Q Q Q
Sbjct: 271  SKGYCQVEFFDPAAAASCKEGMNGHIFNGRACVVAFATPQTIKQMGSSYMNKTQNQVQTQ 330

Query: 1750 PQGRRVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXX 1571
            PQGRR P + G GRG GAN+  G     GRNF +                          
Sbjct: 331  PQGRR-PMNEGVGRG-GANYAPG---DAGRNFGR-GSWGRGGPGMPNRGPGGGPVRGRGG 384

Query: 1570 XXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXX 1391
              AKNMM               + Q                PQ MMG GFDP        
Sbjct: 385  MGAKNMM---GNPGAGTGPGGAFGQGLAGPAFGGPPAGLMHPQGMMGPGFDPGFMGRGAG 441

Query: 1390 XXXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGR 1277
                                  GLPGVAPHVNPAFFGR
Sbjct: 442  YGGFSGPAFPGMIPQFPAVNPMGLPGVAPHVNPAFFGR 479



 Score = 62.4 bits (150), Expect = 2e-06
 Identities = 32/57 (56%), Positives = 38/57 (66%)
 Frame = -2

Query: 943 GHRDHXXXXXXXXXXXXXXRGQSSSRSRSKTHMMQEDDHRSRSRDGDYGKRRRLPSE 773
           G+RD+              RGQSSSRSRS++   QE+DHRSRSRD +YGKRRR PSE
Sbjct: 592 GYRDYRQKERESEYEDDYDRGQSSSRSRSRSRAAQEEDHRSRSRDTNYGKRRRAPSE 648


>ref|XP_007044909.1| RNA-binding family protein isoform 6 [Theobroma cacao]
            gi|508708844|gb|EOY00741.1| RNA-binding family protein
            isoform 6 [Theobroma cacao]
          Length = 602

 Score =  271 bits (692), Expect = 3e-69
 Identities = 156/341 (45%), Positives = 193/341 (56%)
 Frame = -2

Query: 2299 TEIVAAPQVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNR 2120
            TE     QV N+GFQG  +A  K G DP+ +P K +       + GT   +    +  N+
Sbjct: 148  TEGTHDKQVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQ 207

Query: 2119 VPGNVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERA 1940
            +  NVN P++++N ++P ++NG TM+FVG+LHWWTTDAELE VLSQYGR+KEIKFFDE+A
Sbjct: 208  MGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKA 267

Query: 1939 SGKSKGYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQA 1760
            SGKSKGYCQVEFY+  +AA CKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK Q Q+
Sbjct: 268  SGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQS 327

Query: 1759 QAQPQGRRVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXX 1580
            QAQPQGRR PN+ G GRG   N+ +G     GRN+ +                       
Sbjct: 328  QAQPQGRR-PNE-GLGRGGNLNYQSG---DAGRNYGR-GGWGRGGQGGVNRAGGGGLMRG 381

Query: 1579 XXXXXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXX 1400
                  KNM+            A  Y Q                PQ MMGAGFDPT    
Sbjct: 382  RGGVGVKNMVGISAGVGNGANGAGAYGQ-GPGPAFGGPAGGMMHPQGMMGAGFDPTYMVR 440

Query: 1399 XXXXXXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGR 1277
                                     GL GVAPHVNPAFFGR
Sbjct: 441  GGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGR 481


>ref|XP_007044908.1| RNA-binding family protein isoform 5, partial [Theobroma cacao]
            gi|508708843|gb|EOY00740.1| RNA-binding family protein
            isoform 5, partial [Theobroma cacao]
          Length = 656

 Score =  271 bits (692), Expect = 3e-69
 Identities = 156/341 (45%), Positives = 193/341 (56%)
 Frame = -2

Query: 2299 TEIVAAPQVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNR 2120
            TE     QV N+GFQG  +A  K G DP+ +P K +       + GT   +    +  N+
Sbjct: 148  TEGTHDKQVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQ 207

Query: 2119 VPGNVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERA 1940
            +  NVN P++++N ++P ++NG TM+FVG+LHWWTTDAELE VLSQYGR+KEIKFFDE+A
Sbjct: 208  MGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKA 267

Query: 1939 SGKSKGYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQA 1760
            SGKSKGYCQVEFY+  +AA CKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK Q Q+
Sbjct: 268  SGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQS 327

Query: 1759 QAQPQGRRVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXX 1580
            QAQPQGRR PN+ G GRG   N+ +G     GRN+ +                       
Sbjct: 328  QAQPQGRR-PNE-GLGRGGNLNYQSG---DAGRNYGR-GGWGRGGQGGVNRAGGGGLMRG 381

Query: 1579 XXXXXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXX 1400
                  KNM+            A  Y Q                PQ MMGAGFDPT    
Sbjct: 382  RGGVGVKNMVGISAGVGNGANGAGAYGQ-GPGPAFGGPAGGMMHPQGMMGAGFDPTYMVR 440

Query: 1399 XXXXXXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGR 1277
                                     GL GVAPHVNPAFFGR
Sbjct: 441  GGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGR 481


>ref|XP_007044907.1| RNA-binding family protein isoform 4 [Theobroma cacao]
            gi|508708842|gb|EOY00739.1| RNA-binding family protein
            isoform 4 [Theobroma cacao]
          Length = 697

 Score =  271 bits (692), Expect = 3e-69
 Identities = 156/341 (45%), Positives = 193/341 (56%)
 Frame = -2

Query: 2299 TEIVAAPQVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNR 2120
            TE     QV N+GFQG  +A  K G DP+ +P K +       + GT   +    +  N+
Sbjct: 148  TEGTHDKQVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQ 207

Query: 2119 VPGNVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERA 1940
            +  NVN P++++N ++P ++NG TM+FVG+LHWWTTDAELE VLSQYGR+KEIKFFDE+A
Sbjct: 208  MGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKA 267

Query: 1939 SGKSKGYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQA 1760
            SGKSKGYCQVEFY+  +AA CKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK Q Q+
Sbjct: 268  SGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQS 327

Query: 1759 QAQPQGRRVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXX 1580
            QAQPQGRR PN+ G GRG   N+ +G     GRN+ +                       
Sbjct: 328  QAQPQGRR-PNE-GLGRGGNLNYQSG---DAGRNYGR-GGWGRGGQGGVNRAGGGGLMRG 381

Query: 1579 XXXXXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXX 1400
                  KNM+            A  Y Q                PQ MMGAGFDPT    
Sbjct: 382  RGGVGVKNMVGISAGVGNGANGAGAYGQ-GPGPAFGGPAGGMMHPQGMMGAGFDPTYMVR 440

Query: 1399 XXXXXXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGR 1277
                                     GL GVAPHVNPAFFGR
Sbjct: 441  GGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGR 481



 Score = 60.1 bits (144), Expect = 9e-06
 Identities = 31/56 (55%), Positives = 36/56 (64%)
 Frame = -2

Query: 940 HRDHXXXXXXXXXXXXXXRGQSSSRSRSKTHMMQEDDHRSRSRDGDYGKRRRLPSE 773
           +R+H              RGQSSSRSR ++H M E+  RSRSRD DYGKRRRLPSE
Sbjct: 642 YREHRHRERDLDYDDDLDRGQSSSRSRRRSHAMPEEQRRSRSRDVDYGKRRRLPSE 697


>ref|XP_007044904.1| RNA-binding family protein isoform 1 [Theobroma cacao]
            gi|590695496|ref|XP_007044905.1| RNA-binding family
            protein isoform 1 [Theobroma cacao]
            gi|590695500|ref|XP_007044906.1| RNA-binding family
            protein isoform 1 [Theobroma cacao]
            gi|508708839|gb|EOY00736.1| RNA-binding family protein
            isoform 1 [Theobroma cacao] gi|508708840|gb|EOY00737.1|
            RNA-binding family protein isoform 1 [Theobroma cacao]
            gi|508708841|gb|EOY00738.1| RNA-binding family protein
            isoform 1 [Theobroma cacao]
          Length = 652

 Score =  271 bits (692), Expect = 3e-69
 Identities = 156/341 (45%), Positives = 193/341 (56%)
 Frame = -2

Query: 2299 TEIVAAPQVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNR 2120
            TE     QV N+GFQG  +A  K G DP+ +P K +       + GT   +    +  N+
Sbjct: 148  TEGTHDKQVKNLGFQGLTSASNKVGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQ 207

Query: 2119 VPGNVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERA 1940
            +  NVN P++++N ++P ++NG TM+FVG+LHWWTTDAELE VLSQYGR+KEIKFFDE+A
Sbjct: 208  MGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKA 267

Query: 1939 SGKSKGYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQA 1760
            SGKSKGYCQVEFY+  +AA CKEGM+G++FNGRACVVAFASPQ+LKQMGA+Y+NK Q Q+
Sbjct: 268  SGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQS 327

Query: 1759 QAQPQGRRVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXX 1580
            QAQPQGRR PN+ G GRG   N+ +G     GRN+ +                       
Sbjct: 328  QAQPQGRR-PNE-GLGRGGNLNYQSG---DAGRNYGR-GGWGRGGQGGVNRAGGGGLMRG 381

Query: 1579 XXXXXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXX 1400
                  KNM+            A  Y Q                PQ MMGAGFDPT    
Sbjct: 382  RGGVGVKNMVGISAGVGNGANGAGAYGQ-GPGPAFGGPAGGMMHPQGMMGAGFDPTYMVR 440

Query: 1399 XXXXXXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGR 1277
                                     GL GVAPHVNPAFFGR
Sbjct: 441  GGGYGGFPGPGFPGMLPSFPAVNTMGLAGVAPHVNPAFFGR 481



 Score = 62.8 bits (151), Expect = 1e-06
 Identities = 31/56 (55%), Positives = 38/56 (67%)
 Frame = -2

Query: 940 HRDHXXXXXXXXXXXXXXRGQSSSRSRSKTHMMQEDDHRSRSRDGDYGKRRRLPSE 773
           +R+H              RGQSSSRSR ++H M E++HRSRSRD DYGK+RRLPSE
Sbjct: 597 YREHRHRERDLDYDDDWDRGQSSSRSRRRSHAMPEEEHRSRSRDVDYGKKRRLPSE 652


>ref|XP_009359255.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 6
            [Pyrus x bretschneideri]
          Length = 656

 Score =  270 bits (691), Expect = 3e-69
 Identities = 165/357 (46%), Positives = 196/357 (54%), Gaps = 4/357 (1%)
 Frame = -2

Query: 2278 QVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLP--DPGTDALRNAQQMQVNR--VPG 2111
            QV +M FQGS T PP  G D + +  K  G +  +P  +P +     A Q+  N+  +  
Sbjct: 155  QVRHMAFQGSTTMPPNVGVDSSDITGK--GNSEFVPSLNPASAGPPGATQIPTNQMSIKI 212

Query: 2110 NVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGK 1931
            N NRP+V++N IRP ++NG+  +FVG+LHWWTTDAE+E V+SQYGRVKEIKFFDERASGK
Sbjct: 213  NANRPMVNENQIRPPIENGSATLFVGELHWWTTDAEIESVISQYGRVKEIKFFDERASGK 272

Query: 1930 SKGYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQ 1751
            SKGYCQVEF++  AA ACKEGM G++FNGRACVVAFASPQ+LKQMGA+YL+K+Q QAQAQ
Sbjct: 273  SKGYCQVEFHDQAAATACKEGMDGYVFNGRACVVAFASPQTLKQMGASYLSKSQGQAQAQ 332

Query: 1750 PQGRRVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXX 1571
              GRR  NDGG GRG G NF   AGD GGRNF +                          
Sbjct: 333  QPGRRPMNDGG-GRGGGVNFQ--AGDPGGRNFGR-GGWGRGGQGVRGPGGGGPMRGRGGA 388

Query: 1570 XXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXXX 1391
              AKNM+               Y Q                PQ MMG+GFDPT       
Sbjct: 389  MGAKNMVGNPAGVGTGTNGGG-YGQ-GLGGPGFGGPVGMMNPQGMMGSGFDPTYMGRGGG 446

Query: 1390 XXXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAHH 1220
                                  GL GVAPHVNPAFF R              ME HH
Sbjct: 447  YGGFPGPAFPGMLPQFPGVNTMGLAGVAPHVNPAFFARGMATNGMGMMGSSGMEGHH 503


>ref|XP_007225677.1| hypothetical protein PRUPE_ppa002814mg [Prunus persica]
            gi|462422613|gb|EMJ26876.1| hypothetical protein
            PRUPE_ppa002814mg [Prunus persica]
          Length = 630

 Score =  270 bits (689), Expect = 6e-69
 Identities = 163/361 (45%), Positives = 194/361 (53%), Gaps = 3/361 (0%)
 Frame = -2

Query: 2293 IVAAPQVGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGTDALRNAQQMQVNRVP 2114
            +   P++G+ G+ GS T PP  G D + +  K +  +    + GT       QM  N++ 
Sbjct: 122  VAKEPELGSTGY-GSTTMPPNVGGDSSDITGKTALESVPSMNSGTAGPTGVTQMPTNQIS 180

Query: 2113 --GNVNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERA 1940
               N NRP+ ++N IRP V+NG+TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERA
Sbjct: 181  IKVNANRPMFNENQIRPPVENGSTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERA 240

Query: 1939 SGKSKGYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQA 1760
            SGKSKGYCQVEF++  AA ACKEGM G+LFNGRACVVAFASPQ+LKQMGA+YL+K+Q Q 
Sbjct: 241  SGKSKGYCQVEFHDPAAATACKEGMDGYLFNGRACVVAFASPQTLKQMGASYLSKSQGQT 300

Query: 1759 QAQPQGRRVPNDGGSGRGAGANFPAGAGDTGGRNFNK-VXXXXXXXXXXXXXXXXXXXXX 1583
            Q+Q  GRR P + G GRG G N+    GDTGGRNF +                       
Sbjct: 301  QSQQPGRR-PMNEGVGRGGGVNYQ--TGDTGGRNFGRGGWGRGGQGVANRGPGGGGPMRG 357

Query: 1582 XXXXXXAKNMMXXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXX 1403
                  AKNM                Y Q                PQ MMGAGFDPT   
Sbjct: 358  RGGAMGAKNM--AGNPAGVGTGANGGYGQGLAGPGFGGPVGGMMNPQGMMGAGFDPTYMG 415

Query: 1402 XXXXXXXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGRXXXXXXXXXXXXXXMEAH 1223
                                      GL GVAPHVNPAFFGR              M+ H
Sbjct: 416  RGGGYGGFPGPAFPGMLSSFPAVNTMGLAGVAPHVNPAFFGRGMATNGMGMMGSSGMDGH 475

Query: 1222 H 1220
            H
Sbjct: 476  H 476



 Score = 65.1 bits (157), Expect = 3e-07
 Identities = 34/56 (60%), Positives = 37/56 (66%)
 Frame = -2

Query: 940 HRDHXXXXXXXXXXXXXXRGQSSSRSRSKTHMMQEDDHRSRSRDGDYGKRRRLPSE 773
           +RDH              RGQSSSR RS++  M EDDHRSRSRD DYGKRRRLPSE
Sbjct: 575 YRDHRQRERDVGYEDDWDRGQSSSRPRSRSKAMPEDDHRSRSRDVDYGKRRRLPSE 630


>ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
            CG7185-like isoform X1 [Citrus sinensis]
          Length = 658

 Score =  268 bits (686), Expect = 1e-68
 Identities = 163/339 (48%), Positives = 192/339 (56%), Gaps = 6/339 (1%)
 Frame = -2

Query: 2275 VGNMGFQGSATAPPKFGADPNQMPAKFSGATPLLPDPGT----DALRNAQQMQVNRVPGN 2108
            V NMGFQGS + P + G DP+ MP + +     + +PG      AL  A QM VN    N
Sbjct: 157  VRNMGFQGSTSGPSRTGVDPSNMPGRVANEPAPVLNPGAAGPQGALIPANQMGVNI---N 213

Query: 2107 VNRPIVSDNPIRPAVDNGTTMIFVGDLHWWTTDAELEGVLSQYGRVKEIKFFDERASGKS 1928
            VNR +V++N IRP ++NG TM+FVG+LHWWTTDAELE VLSQYGRVKEIKFFDERASGKS
Sbjct: 214  VNRAMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKS 273

Query: 1927 KGYCQVEFYESGAAAACKEGMHGFLFNGRACVVAFASPQSLKQMGAAYLNKAQVQAQAQP 1748
            KGYCQVEF+++ AAAACK+GM+G +FNGR CVVAFASPQ+LKQMGA+Y+NK Q Q Q+Q 
Sbjct: 274  KGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQT 333

Query: 1747 QGRRVPNDGGSGRGAGANFPAGAGDTGGRNFNKVXXXXXXXXXXXXXXXXXXXXXXXXXX 1568
            QGRR  NDGG GRG   N+ +G    GGRNF +                           
Sbjct: 334  QGRRPMNDGG-GRGGNMNYQSG---DGGRNFGR-GGWGRGGQGVPNRGPGGGAMRGRGPM 388

Query: 1567 XAKNMM--XXXXXXXXXXXXANPYAQXXXXXXXXXXXXXXXXPQNMMGAGFDPTXXXXXX 1394
             A+NM+                 Y Q                PQNMMG GFDPT      
Sbjct: 389  GARNMIGSSSGAGSGVGHAAGGGYGQGLAGPGFGGPAGGMMHPQNMMG-GFDPTYMGRGG 447

Query: 1393 XXXXXXXXXXXXXXXXXXXXXXXGLPGVAPHVNPAFFGR 1277
                                   GL GVAPHVNPAFF R
Sbjct: 448  GYGGFSGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFNR 486