BLASTX nr result
ID: Papaver31_contig00028041
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver31_contig00028041
(1052 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera] 320 9e-85
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su... 318 5e-84
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su... 318 5e-84
ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV su... 313 1e-82
ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV su... 308 4e-81
ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV su... 308 4e-81
ref|XP_008448971.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 307 1e-80
ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV su... 306 2e-80
ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV su... 301 4e-79
emb|CBI34757.3| unnamed protein product [Vitis vinifera] 301 4e-79
ref|XP_011650450.1| PREDICTED: DNA-directed RNA polymerase IV su... 300 1e-78
ref|XP_011650451.1| PREDICTED: DNA-directed RNA polymerase IV su... 300 1e-78
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-... 296 2e-77
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin... 295 5e-77
ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 291 8e-76
ref|XP_009377912.1| PREDICTED: DNA-directed RNA polymerase IV su... 287 9e-75
ref|XP_008358315.1| PREDICTED: DNA-directed RNA polymerase IV su... 287 9e-75
ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV su... 286 1e-74
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r... 286 1e-74
ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV su... 286 1e-74
>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
Length = 1393
Score = 320 bits (821), Expect = 9e-85
Identities = 172/357 (48%), Positives = 231/357 (64%), Gaps = 7/357 (1%)
Frame = -1
Query: 1052 PGCKSVR----TKGPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGK 885
PGCKS R KG S + S CKYC +S DWYP MKFK + ++D F K
Sbjct: 99 PGCKSTRQGQWVKGADSGSRRLRSK------GCKYCAANSNDWYPTMKFKVS-SKDLFRK 151
Query: 884 NISEIIVEVTDKIPRKYFSKGLD--LPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNI 711
+ IIVE+ +K+P+K K LP+DYWDFI KDPQQ E +RR L+ QV +
Sbjct: 152 --TAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNRRVLSHAQVHYL 209
Query: 710 LKDVDPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVD 531
LKD+DP F+K FV + FL+ + VTPN RV E+ + L+ GQ++IFD ++AYK+LVD
Sbjct: 210 LKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVD 269
Query: 530 FKRSANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCK-TGHQWVKDVM 354
F+ +ANEL RV DC N + + S K ++ K +G +W+K+V+
Sbjct: 270 FRGTANELSCRVLDCLKTSKAS------------NLRSEKSTSKDSASKMSGLKWIKEVL 317
Query: 353 LGKMTDNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKG 174
LGK T++SFRM++VGDP+++L EIGIP IAE L ++E LNSWNW+K+ N RLLEKG
Sbjct: 318 LGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKG 377
Query: 173 VLIVRRKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
VRRKG A V + +D + GD +YRPL +GD+V+INRPPS+HQHS+IALSVK+LP
Sbjct: 378 QTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLP 434
>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
vinifera]
Length = 1458
Score = 318 bits (815), Expect = 5e-84
Identities = 171/357 (47%), Positives = 230/357 (64%), Gaps = 7/357 (1%)
Frame = -1
Query: 1052 PGCKSVR----TKGPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGK 885
PGCKS R KG S + S CKYC +S DWYP MKFK + ++D F K
Sbjct: 99 PGCKSTRQGQWVKGADSGSRRLRSK------GCKYCAANSNDWYPTMKFKVS-SKDLFRK 151
Query: 884 NISEIIVEVTDKIPRKYFSKGLD--LPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNI 711
+ IIVE+ +K+P+K K LP+DYWDFI KDPQQ E +RR L+ QV +
Sbjct: 152 --TAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNRRVLSHAQVHYL 209
Query: 710 LKDVDPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVD 531
LKD+DP F+K FV + FL+ + VTPN RV E+ + L+ GQ++IFD ++AYK+LVD
Sbjct: 210 LKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVD 269
Query: 530 FKRSANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCK-TGHQWVKDVM 354
F+ +ANEL RV DC + + S K ++ K +G +W+K+V+
Sbjct: 270 FRGTANELSCRVLDCLKTSKL---------------RSEKSTSKDSASKMSGLKWIKEVL 314
Query: 353 LGKMTDNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKG 174
LGK T++SFRM++VGDP+++L EIGIP IAE L ++E LNSWNW+K+ N RLLEKG
Sbjct: 315 LGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKG 374
Query: 173 VLIVRRKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
VRRKG A V + +D + GD +YRPL +GD+V+INRPPS+HQHS+IALSVK+LP
Sbjct: 375 QTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLP 431
>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Vitis
vinifera]
Length = 1460
Score = 318 bits (815), Expect = 5e-84
Identities = 171/357 (47%), Positives = 230/357 (64%), Gaps = 7/357 (1%)
Frame = -1
Query: 1052 PGCKSVR----TKGPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGK 885
PGCKS R KG S + S CKYC +S DWYP MKFK + ++D F K
Sbjct: 99 PGCKSTRQGQWVKGADSGSRRLRSK------GCKYCAANSNDWYPTMKFKVS-SKDLFRK 151
Query: 884 NISEIIVEVTDKIPRKYFSKGLD--LPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNI 711
+ IIVE+ +K+P+K K LP+DYWDFI KDPQQ E +RR L+ QV +
Sbjct: 152 --TAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNRRVLSHAQVHYL 209
Query: 710 LKDVDPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVD 531
LKD+DP F+K FV + FL+ + VTPN RV E+ + L+ GQ++IFD ++AYK+LVD
Sbjct: 210 LKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVD 269
Query: 530 FKRSANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCK-TGHQWVKDVM 354
F+ +ANEL RV DC + + S K ++ K +G +W+K+V+
Sbjct: 270 FRGTANELSCRVLDCLKTSKL---------------RSEKSTSKDSASKMSGLKWIKEVL 314
Query: 353 LGKMTDNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKG 174
LGK T++SFRM++VGDP+++L EIGIP IAE L ++E LNSWNW+K+ N RLLEKG
Sbjct: 315 LGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKG 374
Query: 173 VLIVRRKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
VRRKG A V + +D + GD +YRPL +GD+V+INRPPS+HQHS+IALSVK+LP
Sbjct: 375 QTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLP 431
>ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3
[Vitis vinifera]
Length = 1354
Score = 313 bits (802), Expect = 1e-82
Identities = 161/325 (49%), Positives = 219/325 (67%), Gaps = 3/325 (0%)
Frame = -1
Query: 968 CKYCVKSSTDWYPKMKFKAAGARDYFGKNISEIIVEVTDKIPRKYFSKGLD--LPMDYWD 795
CKYC +S DWYP MKFK + ++D F K + IIVE+ +K+P+K K LP+DYWD
Sbjct: 19 CKYCAANSNDWYPTMKFKVS-SKDLFRK--TAIIVEMNEKLPKKLQKKSFRPVLPLDYWD 75
Query: 794 FIMKDPQQVETDYKSHRRSLTPLQVSNILKDVDPNFVKSFVPKRILLFLSAISVTPNCGR 615
FI KDPQQ E +RR L+ QV +LKD+DP F+K FV + FL+ + VTPN R
Sbjct: 76 FIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHR 135
Query: 614 VVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXXXXXXXX 435
V E+ + L+ GQ++IFD ++AYK+LVDF+ +ANEL RV DC
Sbjct: 136 VTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKL----------- 184
Query: 434 SFNSKFDFSNKKPNSCK-TGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIPNDIAE 258
+ + S K ++ K +G +W+K+V+LGK T++SFRM++VGDP+++L EIGIP IAE
Sbjct: 185 ----RSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAE 240
Query: 257 RLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYRPLEEG 78
L ++E LNSWNW+K+ N RLLEKG VRRKG A V + +D + GD +YRPL +G
Sbjct: 241 ELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDG 300
Query: 77 DLVMINRPPSLHQHSIIALSVKILP 3
D+V+INRPPS+HQHS+IALSVK+LP
Sbjct: 301 DIVLINRPPSIHQHSVIALSVKVLP 325
>ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
Length = 1453
Score = 308 bits (790), Expect = 4e-81
Identities = 167/355 (47%), Positives = 225/355 (63%), Gaps = 5/355 (1%)
Frame = -1
Query: 1052 PGCKSVRTKGPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGKNISE 873
PGCKS+R + + +++ + + CKYCV ++ YP MKF + + + F KN+
Sbjct: 99 PGCKSIRKESKRTDSKSKENLHKG----CKYCVGNTIGGYPTMKFSVS-SEEIFRKNV-- 151
Query: 872 IIVEVTDKIPRKYFSKGLD--LPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNILKDV 699
II +++++ P+ +G L DYWD I KD QQ E + ++R LT QV ++LKDV
Sbjct: 152 IIAKISERPPQNSHKRGRKKRLAADYWDIIPKDEQQEENTLRPNQRVLTHAQVRHLLKDV 211
Query: 698 DPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRS 519
DPNF+K FV K +FL+ VTPNC RV E+ + + GQ ++FD+RT+AYK+LVDF+ +
Sbjct: 212 DPNFIKKFVLKTDSIFLNCFPVTPNCHRVTEVTHAFSNGQRLVFDERTRAYKKLVDFRGT 271
Query: 518 ANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPN---SCKTGHQWVKDVMLG 348
A EL RV DC N +K N S +G +WVKDV+LG
Sbjct: 272 AKELSFRVLDCLKTSKLNPDNSVN------NDDMYALQRKINDSASNSSGLRWVKDVVLG 325
Query: 347 KMTDNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVL 168
K DNSFRMV+VGDP IKL EIGIP IAERL+V+E L WN ++L C RLLEKG +
Sbjct: 326 KRNDNSFRMVVVGDPNIKLSEIGIPCHIAERLQVSEHLTKWNRERLTTCCEVRLLEKGEM 385
Query: 167 IVRRKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
VRR+G V +T DL+IGD +YRPL +GD V+INRPPS+HQHS+IALSVK+LP
Sbjct: 386 HVRREGNLVRVRRTKDLRIGDIIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLP 440
>ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Cucumis sativus] gi|778675671|ref|XP_011650448.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Cucumis sativus]
gi|778675673|ref|XP_011650449.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus]
gi|700200830|gb|KGN55963.1| hypothetical protein
Csa_3G039340 [Cucumis sativus]
Length = 1483
Score = 308 bits (790), Expect = 4e-81
Identities = 166/353 (47%), Positives = 230/353 (65%), Gaps = 3/353 (0%)
Frame = -1
Query: 1052 PGCKSVRTKGPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGKNISE 873
PGCKSVR + + + ++ Y + C+YC S DWYP M+FK + D F K++
Sbjct: 115 PGCKSVRQELWGKVEDPTSD--YNRPKGCRYCFGSLKDWYPPMRFKLS-TTDMFKKSM-- 169
Query: 872 IIVEVTDKIPRKY---FSKGLDLPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNILKD 702
I+VEV + + +KY +KG LP DYWDFI KD QQ E+ + +R+ LT QV +LKD
Sbjct: 170 IMVEVKENMSKKYQKRVAKG-GLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKD 228
Query: 701 VDPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKR 522
+DP F+K FVP LFL++ VTPN RV EMA+ + GQ +IFD+RT+AYK++VDF+
Sbjct: 229 IDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRG 288
Query: 521 SANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCKTGHQWVKDVMLGKM 342
+ANELGSRV DC K K + +G +W+KDV+LGK
Sbjct: 289 TANELGSRVLDCLKISKLSPEKLQNKDLVYQQKKI----KDTATSSSGLRWIKDVVLGKR 344
Query: 341 TDNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIV 162
+D+ FRMV+VGDP I+L EIGIP +AERL+++E L+SWN +KL+ L+EKG + V
Sbjct: 345 SDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYV 404
Query: 161 RRKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
RR+G+ V +L +GD +YRPL +GD+V++NRPPS+HQHS+IALSVK+LP
Sbjct: 405 RREGRLVRVRNVLELNMGDTIYRPLADGDIVLVNRPPSIHQHSLIALSVKLLP 457
>ref|XP_008448971.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
subunit 1 [Cucumis melo]
Length = 1489
Score = 307 bits (786), Expect = 1e-80
Identities = 167/356 (46%), Positives = 231/356 (64%), Gaps = 6/356 (1%)
Frame = -1
Query: 1052 PGCKSVRTKGPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGKNISE 873
PGCKS+R + + + ++ Y + C+YC S DWYP M+FK + D F K++
Sbjct: 115 PGCKSIRQELWGKVEDPTSD--YNRPKGCRYCFGSLKDWYPPMRFKLS-TTDMFKKSM-- 169
Query: 872 IIVEVTDKIPRKY---FSKGLDLPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNILKD 702
I+VEV + + +KY +KG LP DYWDFI KD QQ E+ + +R+ LT QV +LKD
Sbjct: 170 IMVEVKENMSKKYQKRVAKG-GLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKD 228
Query: 701 VDPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKR 522
+DP F+K FVP LFL++ VTPN RV EMA+ + GQ +IFD+RT+AYK++VDF+
Sbjct: 229 IDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRG 288
Query: 521 SANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCKT---GHQWVKDVML 351
+ANELGSRV DC +F KK T G +W+KDV+L
Sbjct: 289 TANELGSRVLDCLKISKAIYKIFPREVT---KXRFGLPAKKIKDTATSSSGLRWIKDVVL 345
Query: 350 GKMTDNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGV 171
GK +D+ FRMV+VGDP I+L EIGIP +AERL+++E L+SWN +KL+ L+EKG
Sbjct: 346 GKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGE 405
Query: 170 LIVRRKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
+ VRR+G+ V +L +GD +YRPL +GD+V++NRPPS+HQHS+IALSVK+LP
Sbjct: 406 IYVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIALSVKLLP 461
>ref|XP_010278507.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Nelumbo nucifera]
Length = 1489
Score = 306 bits (784), Expect = 2e-80
Identities = 168/358 (46%), Positives = 227/358 (63%), Gaps = 8/358 (2%)
Frame = -1
Query: 1052 PGCKSVRTKGPSSMTET--SASPYYAQQFTCKYCVK--SSTDWYPKMKFKAAGARDYFGK 885
PGC+SVR T+T S + Q CKYC K SS +WYP MKFK A ++D K
Sbjct: 99 PGCRSVRHDLKIKDTDTLKSLTMDSHQYKDCKYCAKQGSSKEWYPTMKFKVA-SKDLSKK 157
Query: 884 NISEIIVEVTDKIPRKYFSKGLD--LPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNI 711
N S +IVEV +K+P+K+ +K L LP DYWD I KDP+Q E+ K +RRSL+P QV +
Sbjct: 158 NTSSVIVEVNEKLPKKFANKNLGEVLPTDYWDCIQKDPEQEESFLKPNRRSLSPFQVYCL 217
Query: 710 LKDVDPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVD 531
LK VD F+K FV + +FLS VTPNC R++E+ +L + G + FD+RTKA K+L+D
Sbjct: 218 LKSVDLRFLKKFVLRPEAIFLSCFPVTPNCHRIMELTHLSSNGHQLAFDERTKAMKKLID 277
Query: 530 FKRSANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCKT--GHQWVKDV 357
KR ANEL V +C + K D K +S + G +W+K++
Sbjct: 278 SKRHANELSLHVRNCLSVSKLHTDK---------SLKKDTVLGKNDSVSSMCGLKWIKEI 328
Query: 356 MLGKMTDNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEK 177
MLGK TD +FRM ++GDP+I L EIG+P +AE L++ E LN NW+KL L+EK
Sbjct: 329 MLGKRTDYAFRMTVIGDPKISLCEIGVPRMVAENLQIPEYLNVHNWEKLINHLKFHLIEK 388
Query: 176 GVLIVRRKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
G +RRKGK + T +LK+GD VYR L++GD+V+INRPPS+HQHS++ALSVK+LP
Sbjct: 389 GRFFIRRKGKLVQLCDTSELKLGDIVYRHLDDGDIVLINRPPSVHQHSLMALSVKVLP 446
>ref|XP_010278508.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Nelumbo nucifera]
Length = 1373
Score = 301 bits (772), Expect = 4e-79
Identities = 157/326 (48%), Positives = 213/326 (65%), Gaps = 4/326 (1%)
Frame = -1
Query: 968 CKYCVKSSTDWYPKMKFKAAGARDYFGKNISEIIVEVTDKIPRKYFSKGLD--LPMDYWD 795
CKYC SS +WYP MKFK A ++D KN S +IVEV +K+P+K+ +K L LP DYWD
Sbjct: 9 CKYCAGSSKEWYPTMKFKVA-SKDLSKKNTSSVIVEVNEKLPKKFANKNLGEVLPTDYWD 67
Query: 794 FIMKDPQQVETDYKSHRRSLTPLQVSNILKDVDPNFVKSFVPKRILLFLSAISVTPNCGR 615
I KDP+Q E+ K +RRSL+P QV +LK VD F+K FV + +FLS VTPNC R
Sbjct: 68 CIQKDPEQEESFLKPNRRSLSPFQVYCLLKSVDLRFLKKFVLRPEAIFLSCFPVTPNCHR 127
Query: 614 VVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXXXXXXXX 435
++E+ +L + G + FD+RTKA K+L+D KR ANEL V +C
Sbjct: 128 IMELTHLSSNGHQLAFDERTKAMKKLIDSKRHANELSLHVRNCLSVSKLHTDK------- 180
Query: 434 SFNSKFDFSNKKPNSCKT--GHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIPNDIA 261
+ K D K +S + G +W+K++MLGK TD +FRM ++GDP+I L EIG+P +A
Sbjct: 181 --SLKKDTVLGKNDSVSSMCGLKWIKEIMLGKRTDYAFRMTVIGDPKISLCEIGVPRMVA 238
Query: 260 ERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYRPLEE 81
E L++ E LN NW+KL L+EKG +RRKGK + T +LK+GD VYR L++
Sbjct: 239 ENLQIPEYLNVHNWEKLINHLKFHLIEKGRFFIRRKGKLVQLCDTSELKLGDIVYRHLDD 298
Query: 80 GDLVMINRPPSLHQHSIIALSVKILP 3
GD+V+INRPPS+HQHS++ALSVK+LP
Sbjct: 299 GDIVLINRPPSVHQHSLMALSVKVLP 324
>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
Length = 1359
Score = 301 bits (772), Expect = 4e-79
Identities = 162/352 (46%), Positives = 218/352 (61%), Gaps = 2/352 (0%)
Frame = -1
Query: 1052 PGCKSVRTKGPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGKNISE 873
PGCKS R + + CKYC +S DWYP MKFK + ++D F K +
Sbjct: 99 PGCKSTRQGQWVKVRRLRSKG-------CKYCAANSNDWYPTMKFKVS-SKDLFRK--TA 148
Query: 872 IIVEVTDKIPRKYFSKGLD--LPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNILKDV 699
IIVE+ +K+P+K K LP+DYWDFI KDPQQ E +RR L+ QV +LKD+
Sbjct: 149 IIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDI 208
Query: 698 DPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRS 519
DP F+K FV + FL+ + VTPN RV E+ + L+ GQ++IFD ++AYK+LVDF+ +
Sbjct: 209 DPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGT 268
Query: 518 ANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCKTGHQWVKDVMLGKMT 339
ANEL A S +G +W+K+V+LGK T
Sbjct: 269 ANELSCHSA---------------------------------SKMSGLKWIKEVLLGKRT 295
Query: 338 DNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVR 159
++SFRM++VGDP+++L EIGIP IAE L ++E LNSWNW+K+ N RLLEKG VR
Sbjct: 296 NHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVR 355
Query: 158 RKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
RKG A V + +D + GD +YRPL +GD+V+INRPPS+HQHS+IALSVK+LP
Sbjct: 356 RKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLP 407
>ref|XP_011650450.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Cucumis sativus]
Length = 1362
Score = 300 bits (769), Expect = 1e-78
Identities = 162/344 (47%), Positives = 221/344 (64%), Gaps = 3/344 (0%)
Frame = -1
Query: 1025 GPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGKNISEIIVEVTDKI 846
G E S Y + C+YC S DWYP M+FK + D F K++ I+VEV + +
Sbjct: 2 GQGQQVEDPTSDYNRPK-GCRYCFGSLKDWYPPMRFKLS-TTDMFKKSM--IMVEVKENM 57
Query: 845 PRKY---FSKGLDLPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNILKDVDPNFVKSF 675
+KY +KG LP DYWDFI KD QQ E+ + +R+ LT QV +LKD+DP F+K F
Sbjct: 58 SKKYQKRVAKG-GLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKF 116
Query: 674 VPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRV 495
VP LFL++ VTPN RV EMA+ + GQ +IFD+RT+AYK++VDF+ +ANELGSRV
Sbjct: 117 VPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRV 176
Query: 494 ADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCKTGHQWVKDVMLGKMTDNSFRMVI 315
DC K K + +G +W+KDV+LGK +D+ FRMV+
Sbjct: 177 LDCLKISKLSPEKLQNKDLVYQQKKI----KDTATSSSGLRWIKDVVLGKRSDHCFRMVV 232
Query: 314 VGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACV 135
VGDP I+L EIGIP +AERL+++E L+SWN +KL+ L+EKG + VRR+G+ V
Sbjct: 233 VGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRV 292
Query: 134 FKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
+L +GD +YRPL +GD+V++NRPPS+HQHS+IALSVK+LP
Sbjct: 293 RNVLELNMGDTIYRPLADGDIVLVNRPPSIHQHSLIALSVKLLP 336
>ref|XP_011650451.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3
[Cucumis sativus]
Length = 1361
Score = 300 bits (768), Expect = 1e-78
Identities = 158/325 (48%), Positives = 216/325 (66%), Gaps = 3/325 (0%)
Frame = -1
Query: 968 CKYCVKSSTDWYPKMKFKAAGARDYFGKNISEIIVEVTDKIPRKY---FSKGLDLPMDYW 798
C+YC S DWYP M+FK + D F K++ I+VEV + + +KY +KG LP DYW
Sbjct: 19 CRYCFGSLKDWYPPMRFKLS-TTDMFKKSM--IMVEVKENMSKKYQKRVAKG-GLPSDYW 74
Query: 797 DFIMKDPQQVETDYKSHRRSLTPLQVSNILKDVDPNFVKSFVPKRILLFLSAISVTPNCG 618
DFI KD QQ E+ + +R+ LT QV +LKD+DP F+K FVP LFL++ VTPN
Sbjct: 75 DFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSH 134
Query: 617 RVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXXXXXXX 438
RV EMA+ + GQ +IFD+RT+AYK++VDF+ +ANELGSRV DC
Sbjct: 135 RVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQNKDL 194
Query: 437 XSFNSKFDFSNKKPNSCKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIPNDIAE 258
K K + +G +W+KDV+LGK +D+ FRMV+VGDP I+L EIGIP +AE
Sbjct: 195 VYQQKKI----KDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAE 250
Query: 257 RLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYRPLEEG 78
RL+++E L+SWN +KL+ L+EKG + VRR+G+ V +L +GD +YRPL +G
Sbjct: 251 RLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADG 310
Query: 77 DLVMINRPPSLHQHSIIALSVKILP 3
D+V++NRPPS+HQHS+IALSVK+LP
Sbjct: 311 DIVLVNRPPSIHQHSLIALSVKLLP 335
>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
polymerase II subunit RPB1-B, putative [Theobroma cacao]
Length = 1484
Score = 296 bits (757), Expect = 2e-77
Identities = 162/355 (45%), Positives = 224/355 (63%), Gaps = 5/355 (1%)
Frame = -1
Query: 1052 PGCKSVRT----KGPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGK 885
PGCKSVR KG +S+++ + Q+ CKYCV +S DWYP M FK + ++D F K
Sbjct: 102 PGCKSVRKDLRIKGANSVSKVN------QRKGCKYCVGNSIDWYPPMNFKIS-SKDLFRK 154
Query: 884 NISEIIVEVTDKIPRKYFSKGLD-LPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNIL 708
S IIVEV++K K +G LP DYWDFI KD QQ E+ + +RR L+ QV +L
Sbjct: 155 --SAIIVEVSEKSSMKVRKRGKQALPSDYWDFIPKDEQQEESLIRPNRRVLSHSQVRYLL 212
Query: 707 KDVDPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDF 528
KDVDP F+K FV +FL+ VTPN RV E+ + + GQ +IFD RT+ YK+L DF
Sbjct: 213 KDVDPEFIKKFVLSMDSIFLNCFPVTPNSHRVTEIMHASSNGQRLIFDQRTRVYKKLADF 272
Query: 527 KRSANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCKTGHQWVKDVMLG 348
+ ANEL S V +C ++ NK S +G +++KDV+LG
Sbjct: 273 RGIANELSSHVLECLKISKLHLEKPSNEESALVLAQK--RNKDSASNMSGLRYMKDVILG 330
Query: 347 KMTDNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVL 168
K D+ FRMV+ G+P +KL EI IP +AERL++ E LN+WN ++L C + RLLEKG +
Sbjct: 331 KRNDHCFRMVLTGNPNLKLSEISIPCHVAERLQIAEQLNNWNEERLKACCDLRLLEKGEI 390
Query: 167 IVRRKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
VRR+G+ + + L++GD ++RPL GD+++INRPPS+HQHS+IALSVK+LP
Sbjct: 391 HVRREGRLVRIRHNEKLQVGDTIFRPLNNGDIILINRPPSIHQHSLIALSVKVLP 445
>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 1475
Score = 295 bits (754), Expect = 5e-77
Identities = 154/317 (48%), Positives = 207/317 (65%), Gaps = 5/317 (1%)
Frame = -1
Query: 938 WYPKMKFKAAGARDYFGKNISEIIVEVTDKIPRKYFSKGLD--LPMDYWDFIMKDPQQVE 765
WYP MKF + + + F KN+ II + +++ K +G L DYWD I KD QQ E
Sbjct: 130 WYPAMKFSVS-SEEIFRKNV--IIAKFSERPTNKSQKRGFKKKLAADYWDIIPKDEQQEE 186
Query: 764 TDYKSHRRSLTPLQVSNILKDVDPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTT 585
+ ++R L+ QV ++L+++DPNF++ FV KR +FL+ SVTPNC RV E+ + +
Sbjct: 187 NITRPNQRVLSHAQVIHLLENIDPNFIRKFVLKRDSIFLNCFSVTPNCHRVTEVTHAFSN 246
Query: 584 GQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSN 405
GQ ++FDDRT+AYK++VDF+ A EL RV DC N +
Sbjct: 247 GQRLVFDDRTRAYKKMVDFRGIAKELSFRVLDCLKTSKINPDKSVN------NDDYMALQ 300
Query: 404 KKPN---SCKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECL 234
+K N S +G +W+KDV+LGK DNSFRMV+VGDP IK EIGIP IAERL+++E L
Sbjct: 301 RKMNDSSSSSSGLRWIKDVVLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIAERLQISEHL 360
Query: 233 NSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRP 54
+WNW KLN C RLLEKG + VRR+GK V +T +L+IGD +YRPL +GD V+INRP
Sbjct: 361 TTWNWDKLNTCCEVRLLEKGDMHVRREGKLVRVRRTKELRIGDIIYRPLNDGDTVLINRP 420
Query: 53 PSLHQHSIIALSVKILP 3
PS+HQHS+IALSVK+LP
Sbjct: 421 PSIHQHSLIALSVKVLP 437
>ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
subunit 1 [Prunus mume]
Length = 1452
Score = 291 bits (744), Expect = 8e-76
Identities = 164/350 (46%), Positives = 221/350 (63%)
Frame = -1
Query: 1052 PGCKSVRTKGPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGKNISE 873
PGCKS+R + + S + C+ + S+ +P+MKFK + R+ F + S
Sbjct: 99 PGCKSIRQ---NLRAKVSYRTLHVDPXDCR--INGSSINFPRMKFKVS-TRELFKR--SA 150
Query: 872 IIVEVTDKIPRKYFSKGLDLPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNILKDVDP 693
II E + G+ LP DYWDFI KD QQ E+ K ++R L+ QV +LKDVDP
Sbjct: 151 IIAE----------ANGI-LPADYWDFIPKDAQQDESCMKPNKRVLSHAQVHYLLKDVDP 199
Query: 692 NFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSAN 513
F++ VPK LF+ + VTPNC RV E+ + + GQ ++FD+RT+AY++LVDFK AN
Sbjct: 200 KFIEKIVPKTNSLFMGSFLVTPNCHRVTEVMHSFSNGQRLMFDERTRAYRKLVDFKGVAN 259
Query: 512 ELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCKTGHQWVKDVMLGKMTDN 333
ELGSRV DC F S + K S +G +W+KDV+LGK +D+
Sbjct: 260 ELGSRVLDCLKISKLNSEKPSKD----FISAQQKNIKDDPSKTSGLRWIKDVVLGKRSDH 315
Query: 332 SFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRK 153
FR V+VGDP IKL EIGIP IAERL+++E LN WN +KL+ N RL+ KG + VRRK
Sbjct: 316 CFRTVVVGDPNIKLSEIGIPCQIAERLQISENLNRWNIEKLDASCNLRLMVKGEMHVRRK 375
Query: 152 GKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
G V +TD+L++GD +YRPL +GD+V+INRPPS+HQHS+IALSVKILP
Sbjct: 376 GSLVWVRRTDELQMGDTIYRPLSDGDIVLINRPPSIHQHSLIALSVKILP 425
>ref|XP_009377912.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Pyrus x
bretschneideri] gi|694406181|ref|XP_009377913.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
[Pyrus x bretschneideri]
Length = 1466
Score = 287 bits (735), Expect = 9e-75
Identities = 164/354 (46%), Positives = 219/354 (61%), Gaps = 5/354 (1%)
Frame = -1
Query: 1049 GCKSVRT----KGPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGKN 882
GCKSV+ KG S++ + ++ CKYC SS YP+MKF+ + R+ F ++
Sbjct: 102 GCKSVKQDLKPKGADSLSGKRKRQEHKERKGCKYCKGSSLS-YPRMKFRVS-TRELFKRS 159
Query: 881 ISEIIVEVTDKIPRKYFSKGLDLPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNILKD 702
IIVE + G+ LP D+WDFI KD QQ E+ K ++R L+ QV ++LKD
Sbjct: 160 C--IIVEAS----------GI-LPSDFWDFIPKDEQQDESCVKPNKRILSHAQVHHLLKD 206
Query: 701 VDPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKR 522
VDPNF+ FVP L + + VTPNC RV E + GQ ++FD RT AY++LVDFK
Sbjct: 207 VDPNFIAKFVPITDSLSMDSFLVTPNCHRVTEFMHAFANGQRLMFDHRTTAYRKLVDFKG 266
Query: 521 SANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCKT-GHQWVKDVMLGK 345
ANELGSRV +C + N K + K+ G +W+KDV LGK
Sbjct: 267 VANELGSRVLECLKISKLNSEKPGNDLIAA-----QLKNVKDDPSKSSGLRWIKDVFLGK 321
Query: 344 MTDNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLI 165
TD+ FR V+VGDP IKL EIGIP++IAER+ + E LN WN ++L N L+ K V+
Sbjct: 322 RTDHCFRTVVVGDPNIKLSEIGIPSNIAERMHIAENLNRWNLERLGATCNLLLMFKQVMH 381
Query: 164 VRRKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
VRRKG V +TD+L++GDA+YRPL +GD+V+INRPPS+HQHS+IAL VKILP
Sbjct: 382 VRRKGSIVLVHQTDELQMGDAIYRPLSDGDIVLINRPPSIHQHSLIALFVKILP 435
>ref|XP_008358315.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Malus
domestica]
Length = 1287
Score = 287 bits (735), Expect = 9e-75
Identities = 165/354 (46%), Positives = 218/354 (61%), Gaps = 5/354 (1%)
Frame = -1
Query: 1049 GCKSVRT----KGPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGKN 882
GCKSV+ KG S++ + ++ CKYC SS YP+MKF+ + R+ F ++
Sbjct: 81 GCKSVKQDLKPKGADSLSGKRKRQEHKERKGCKYCKGSSLS-YPRMKFRVS-TRELFKRS 138
Query: 881 ISEIIVEVTDKIPRKYFSKGLDLPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNILKD 702
IIVE + G+ LP DYWDFI KD QQ E+ K ++R L+ QV ++LKD
Sbjct: 139 C--IIVEAS----------GI-LPSDYWDFIPKDAQQDESCVKPNKRILSHAQVHHLLKD 185
Query: 701 VDPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKR 522
VDPNF FVP L + + VTPNC RV E + GQ ++FD RT AY++LVDFK
Sbjct: 186 VDPNFXAKFVPITDSLSMDSFLVTPNCHRVTEFMHAFANGQRLMFDHRTTAYRKLVDFKG 245
Query: 521 SANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCKT-GHQWVKDVMLGK 345
ANELGSRV +C + N K + K+ G +W+KDV LGK
Sbjct: 246 VANELGSRVLECLKISKLNSEKPGNDLIAA-----QLKNVKDDPSKSSGLRWIKDVFLGK 300
Query: 344 MTDNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLI 165
TD+ FR V+VGDP IKL EIGIP++IAER+ + E LN WN ++L N L+ K V+
Sbjct: 301 RTDHCFRTVVVGDPNIKLSEIGIPSNIAERMHIAENLNRWNLERLGATCNLLLMFKQVMH 360
Query: 164 VRRKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
VRRKG V +TD+L++GDA+YRPL +GD+V+INRPPS+HQHS+IAL VKILP
Sbjct: 361 VRRKGSIVLVHQTDELQMGDAIYRPLSDGDIVLINRPPSIHQHSLIALFVKILP 414
>ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
[Gossypium raimondii]
Length = 1300
Score = 286 bits (733), Expect = 1e-74
Identities = 156/355 (43%), Positives = 219/355 (61%), Gaps = 5/355 (1%)
Frame = -1
Query: 1052 PGCKSVRT----KGPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGK 885
PGCKS+R KG +S+ + CKYCV +S +WYP M+FK +++ F K
Sbjct: 102 PGCKSIRKDLWMKGANSIARLLETK------GCKYCVGNSIEWYPPMRFKIT-SKELFRK 154
Query: 884 NISEIIVEVTDKIPRKYFSKGLD-LPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNIL 708
S I+VEV++ K +G LP DYWDFI KD QQ E K RR L+ QV ++L
Sbjct: 155 --SAIMVEVSENSLMKVRKRGRQALPADYWDFIPKDQQQEEGFVKPGRRVLSHAQVRHLL 212
Query: 707 KDVDPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDF 528
KDV+P F+K F+ + +FL+ VTPN RV E+ + + Q +IFD+RT+ YK+LVDF
Sbjct: 213 KDVNPEFIKKFISEADSIFLNFFPVTPNSHRVTEIMHTSSNAQRLIFDERTRVYKKLVDF 272
Query: 527 KRSANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCKTGHQWVKDVMLG 348
+ ANEL S V +C + NK S +G +++KDV+LG
Sbjct: 273 RGLANELSSHVLECLKISKLHVEKPSTEDSALIAALK--KNKDSASNMSGLRYMKDVILG 330
Query: 347 KMTDNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVL 168
K D+ FRMV+ G+P +KL EIGIP +AE+L++ E LN WN ++L C N R+LEKG +
Sbjct: 331 KRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQIAEQLNRWNEERLKTCCNLRILEKGEI 390
Query: 167 IVRRKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
+RR+GK + + +++GD +YRPL +GD V+INRPPS+HQHS+IALSVK+LP
Sbjct: 391 RIRREGKLVRIRHNEKVQVGDTIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLP 445
>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
Length = 1478
Score = 286 bits (733), Expect = 1e-74
Identities = 156/355 (43%), Positives = 219/355 (61%), Gaps = 5/355 (1%)
Frame = -1
Query: 1052 PGCKSVRT----KGPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGK 885
PGCKS+R KG +S+ + CKYCV +S +WYP M+FK +++ F K
Sbjct: 99 PGCKSIRKDLWMKGANSIARLLETK------GCKYCVGNSIEWYPPMRFKIT-SKELFRK 151
Query: 884 NISEIIVEVTDKIPRKYFSKGLD-LPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNIL 708
S I+VEV++ K +G LP DYWDFI KD QQ E K RR L+ QV ++L
Sbjct: 152 --SAIMVEVSENSLMKVRKRGRQALPADYWDFIPKDQQQEEGFVKPGRRVLSHAQVRHLL 209
Query: 707 KDVDPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDF 528
KDV+P F+K F+ + +FL+ VTPN RV E+ + + Q +IFD+RT+ YK+LVDF
Sbjct: 210 KDVNPEFIKKFISEADSIFLNFFPVTPNSHRVTEIMHTSSNAQRLIFDERTRVYKKLVDF 269
Query: 527 KRSANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCKTGHQWVKDVMLG 348
+ ANEL S V +C + NK S +G +++KDV+LG
Sbjct: 270 RGLANELSSHVLECLKISKLHVEKPSTEDSALIAALK--KNKDSASNMSGLRYMKDVILG 327
Query: 347 KMTDNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVL 168
K D+ FRMV+ G+P +KL EIGIP +AE+L++ E LN WN ++L C N R+LEKG +
Sbjct: 328 KRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQIAEQLNRWNEERLKTCCNLRILEKGEI 387
Query: 167 IVRRKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
+RR+GK + + +++GD +YRPL +GD V+INRPPS+HQHS+IALSVK+LP
Sbjct: 388 RIRREGKLVRIRHNEKVQVGDTIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLP 442
>ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Gossypium raimondii] gi|823152441|ref|XP_012476046.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
isoform X1 [Gossypium raimondii]
gi|763758424|gb|KJB25755.1| hypothetical protein
B456_004G207300 [Gossypium raimondii]
gi|763758426|gb|KJB25757.1| hypothetical protein
B456_004G207300 [Gossypium raimondii]
Length = 1481
Score = 286 bits (733), Expect = 1e-74
Identities = 156/355 (43%), Positives = 219/355 (61%), Gaps = 5/355 (1%)
Frame = -1
Query: 1052 PGCKSVRT----KGPSSMTETSASPYYAQQFTCKYCVKSSTDWYPKMKFKAAGARDYFGK 885
PGCKS+R KG +S+ + CKYCV +S +WYP M+FK +++ F K
Sbjct: 102 PGCKSIRKDLWMKGANSIARLLETK------GCKYCVGNSIEWYPPMRFKIT-SKELFRK 154
Query: 884 NISEIIVEVTDKIPRKYFSKGLD-LPMDYWDFIMKDPQQVETDYKSHRRSLTPLQVSNIL 708
S I+VEV++ K +G LP DYWDFI KD QQ E K RR L+ QV ++L
Sbjct: 155 --SAIMVEVSENSLMKVRKRGRQALPADYWDFIPKDQQQEEGFVKPGRRVLSHAQVRHLL 212
Query: 707 KDVDPNFVKSFVPKRILLFLSAISVTPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDF 528
KDV+P F+K F+ + +FL+ VTPN RV E+ + + Q +IFD+RT+ YK+LVDF
Sbjct: 213 KDVNPEFIKKFISEADSIFLNFFPVTPNSHRVTEIMHTSSNAQRLIFDERTRVYKKLVDF 272
Query: 527 KRSANELGSRVADCXXXXXXXXXXXXXXXXXSFNSKFDFSNKKPNSCKTGHQWVKDVMLG 348
+ ANEL S V +C + NK S +G +++KDV+LG
Sbjct: 273 RGLANELSSHVLECLKISKLHVEKPSTEDSALIAALK--KNKDSASNMSGLRYMKDVILG 330
Query: 347 KMTDNSFRMVIVGDPRIKLGEIGIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVL 168
K D+ FRMV+ G+P +KL EIGIP +AE+L++ E LN WN ++L C N R+LEKG +
Sbjct: 331 KRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQIAEQLNRWNEERLKTCCNLRILEKGEI 390
Query: 167 IVRRKGKKACVFKTDDLKIGDAVYRPLEEGDLVMINRPPSLHQHSIIALSVKILP 3
+RR+GK + + +++GD +YRPL +GD V+INRPPS+HQHS+IALSVK+LP
Sbjct: 391 RIRREGKLVRIRHNEKVQVGDTIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLP 445