BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver31_contig00016375
         (1407 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008231662.1| PREDICTED: DNA-directed RNA polymerase V sub...   123   2e-36
ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prun...   123   1e-34
ref|XP_011089162.1| PREDICTED: DNA-directed RNA polymerase V sub...   119   3e-34
ref|XP_010509007.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    98   5e-32
gb|KDO53583.1| hypothetical protein CISIN_1g0002912mg, partial [...   117   2e-31
ref|XP_010512942.1| PREDICTED: DNA-directed RNA polymerase V sub...    96   2e-31
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   116   3e-31
emb|CDY60335.1| BnaC03g72290D [Brassica napus]                        102   2e-30
ref|XP_010246063.1| PREDICTED: DNA-directed RNA polymerase V sub...   135   9e-29
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              124   1e-28
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase V sub...   124   1e-28
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...   132   6e-28
ref|XP_013628526.1| PREDICTED: DNA-directed RNA polymerase V sub...   103   7e-28
ref|XP_010412959.1| PREDICTED: DNA-directed RNA polymerase V sub...    96   7e-28
ref|XP_011655250.1| PREDICTED: DNA-directed RNA polymerase V sub...   131   2e-27
ref|XP_013628527.1| PREDICTED: DNA-directed RNA polymerase V sub...   103   3e-27
ref|XP_009133402.1| PREDICTED: DNA-directed RNA polymerase V sub...   101   4e-27
ref|XP_013734544.1| PREDICTED: DNA-directed RNA polymerase V sub...   101   5e-27
ref|XP_009802889.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   129   6e-27
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th...    98   9e-27

>ref|XP_008231662.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Prunus mume]
          Length = 1855

 Score =  123 bits (309), Expect(2) = 2e-36
 Identities = 65/140 (46%), Positives = 86/140 (61%)
 Frame = -2

Query: 593  STEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNLQGTPDDQSRLNAS 414
            S E+   W Q +    K   +   + +  W SS  G+WKNK  P    G  +D S + A 
Sbjct: 1641 SGERNHQWGQHRGDQTKKNRF---EGARNWVSS-PGEWKNKNRPPKSPGMVNDNSTMGA- 1695

Query: 413  GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
             +YT TRQRLD FT+EEQ  LS ++ ++ ++R+IM QS   DG PLS +DQ+ VL+NVF 
Sbjct: 1696 -LYTVTRQRLDMFTSEEQDVLSNIEPVMRSLRRIMHQSGYNDGDPLSGDDQSFVLDNVFN 1754

Query: 233  YHPDKDVKMGCGIDHVMVCR 174
            YHPDK  KMGCGIDH+ V R
Sbjct: 1755 YHPDKAAKMGCGIDHLTVNR 1774



 Score = 58.5 bits (140), Expect(2) = 2e-36
 Identities = 59/284 (20%), Positives = 93/284 (32%), Gaps = 55/284 (19%)
 Frame = -3

Query: 1396 WNTNKQPSLKNPNSSAPGGWNTKSQPSQNDPNNSWGGLAEKGISTGGWNTK--------- 1244
            W T K    K  +S++        + S  D +++WG    K  +T  W T          
Sbjct: 1361 WGTEKG---KTQDSNSAEAQLDSKKSSVLDTSSAWGKNPAKENTTSTWGTTTASENDWCG 1417

Query: 1243 KQPSQDDPNDSWGGQVEKANTPDGWNTKTQPSQAEPRDSWGGLVEKTNTTGGWNTKMQSS 1064
            +  S+DD     G +    NT   W T T  ++ +   +WG    K NTT  W T M S 
Sbjct: 1418 RGVSEDDSASLSGKKSGVLNTSSAWATNT--AREDAASAWGTNPAKENTTSTWGTTMASE 1475

Query: 1063 QD-----------------------------------EPRGSWGEQVEKANTTAGWNTKT 989
             D                                   +   +WG+   K NTT+ W T  
Sbjct: 1476 NDWCGRGVGQDDSASLSGKKSSVSDTSSAWAANTAREDAASAWGKHPAKENTTSTWGT-- 1533

Query: 988  QPSQVEPDDSWGGLV-----------EXXXXXXXXXXXTRSSQAEARDCWGGLGEKTNTT 842
              ++   +D  GG V           +             +++ +A   WG    K NTT
Sbjct: 1534 --TKASENDWCGGGVGHDDSASLSGKKSSVLNTSSVWAANTAREDATSAWGKNPAKENTT 1591

Query: 841  GGWNAQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEP 710
              W      ++D      G VE  +      ++ +   + W  P
Sbjct: 1592 STWGTTTASENDWCGREAGKVEPVDLQPTKPQDDSASLSGWDSP 1635


>ref|XP_007218881.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
            gi|462415343|gb|EMJ20080.1| hypothetical protein
            PRUPE_ppa000088mg [Prunus persica]
          Length = 1855

 Score =  123 bits (309), Expect(2) = 1e-34
 Identities = 65/140 (46%), Positives = 86/140 (61%)
 Frame = -2

Query: 593  STEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNLQGTPDDQSRLNAS 414
            S E+   W Q +    K   +   + +  W SS  G+WKNK  P    G  +D S + A 
Sbjct: 1641 SGERNHQWGQHRGDQTKKNRF---EGARNWVSS-PGEWKNKNRPPKSPGMVNDNSTMGA- 1695

Query: 413  GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
             +YT TRQRLD FT+EEQ  LS ++ ++ ++R+IM QS   DG PLS +DQ+ VL+NVF 
Sbjct: 1696 -LYTVTRQRLDMFTSEEQDVLSNIEPVMRSLRRIMHQSGYNDGDPLSGDDQSFVLDNVFN 1754

Query: 233  YHPDKDVKMGCGIDHVMVCR 174
            YHPDK  KMGCGIDH+ V R
Sbjct: 1755 YHPDKAAKMGCGIDHLTVNR 1774



 Score = 52.4 bits (124), Expect(2) = 1e-34
 Identities = 57/280 (20%), Positives = 90/280 (32%), Gaps = 51/280 (18%)
 Frame = -3

Query: 1396 WNTNKQPSLKNPNSSAPGGWNTKSQPSQNDPNNSWGGLAEKGISTGGWNTK--------- 1244
            W T K    K  +S++        + S  D +++WG    K  +T  W T          
Sbjct: 1361 WGTEKG---KTQDSNSAEAQLDSKKSSVLDTSSAWGKNPAKENTTSTWGTTTASENDWCG 1417

Query: 1243 KQPSQDDPNDSWGGQVEKANTPDGWNTKTQPSQAEPRDSWGGLVEKTNTTGGWNTKMQSS 1064
            +   +DD     G +    NT   W T T  ++ +   +WG    K N+T  W T   + 
Sbjct: 1418 RGVGEDDSATLSGKKSGVLNTSSAWATNT--AREDAASAWGTNPAKENSTSTWGTTRANE 1475

Query: 1063 QD-----------------------------------EPRGSWGEQVEKANTTAGWNTKT 989
             D                                   +   +WG+   K NTT+ W T T
Sbjct: 1476 NDWCGREVGQDDSASLSVKKSSVLDTSSAWATNTAREDAASAWGKHPAKENTTSTWGTTT 1535

Query: 988  QPSQ------VEPDDSWG-GLVEXXXXXXXXXXXTRSSQAEARDCWGGLGEKTNTTGGWN 830
                      V  DDS      +           T +++ +A   WG    K NTT  W 
Sbjct: 1536 ASENDWCGRGVGHDDSASLSGKKSSVLNTSSVWATNTAREDATSAWGKNPAKENTTSTWG 1595

Query: 829  AQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEP 710
                 ++D      G VE  +      ++ +   + W  P
Sbjct: 1596 TTTASENDWCGREAGKVEPVDLQPTKPQDDSASLSGWDSP 1635


>ref|XP_011089162.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Sesamum indicum]
          Length = 2096

 Score =  119 bits (297), Expect(2) = 3e-34
 Identities = 67/146 (45%), Positives = 88/146 (60%), Gaps = 6/146 (4%)
 Frame = -2

Query: 593  STEKEVH--WSQRKEPPVKPFAWG----TNKSSHGWGSSNTGDWKNKGGPNNLQGTPDDQ 432
            S+EK+V   W + K        WG    + +SS G G +N G+WKNK         P   
Sbjct: 1804 SSEKDVRPQWGRGKGR-----GWGRGGRSRESSQGRGFTNDGEWKNK--------KPRAV 1850

Query: 431  SRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANV 252
               NA  +++ TRQRLD FT EEQ ALSE++ I+  IRKIM Q+   DG PLS +DQ  +
Sbjct: 1851 DDPNAPALFSVTRQRLDSFTVEEQDALSEIEPIMKNIRKIMNQTGYNDGDPLSTDDQTYI 1910

Query: 251  LENVFKYHPDKDVKMGCGIDHVMVCR 174
            ++NVF YHPDK +KMG GID++MV R
Sbjct: 1911 IDNVFSYHPDKALKMGAGIDYIMVSR 1936



 Score = 55.8 bits (133), Expect(2) = 3e-34
 Identities = 51/257 (19%), Positives = 95/257 (36%), Gaps = 22/257 (8%)
 Frame = -3

Query: 1399 GWNTNKQPSLKNPNSSAPGGWNTKSQPSQNDPNNSWGGLAEKGISTGGWNTKKQPSQDDP 1220
            GWN     +        P G    +Q + + P+N+WG  + K +         +  ++ P
Sbjct: 1556 GWNKLGSGTSSLEVLDDPWGAKVANQATHSKPSNAWG--SSKDVGKFDSEPATEQKKESP 1613

Query: 1219 NDSWGG---QVEKANTPDGWNTK--TQPSQAEPRDSWGGLVEKTNTTGGWNTKM--QSSQ 1061
            +++W     Q+  +     W +     PS+ + +  WG         G W  K+  Q+  
Sbjct: 1614 SNNWSSSQKQLNDSTVDKVWGSPHVNTPSEKDMQSQWG-------KKGSWEAKVADQAIH 1666

Query: 1060 DEPRGSWGEQVEKANTTAGWNTKTQPSQVEPDDSWGGLVEXXXXXXXXXXXTRS------ 899
             +P  +WG   +      G  + T   +  P ++WG   E             +      
Sbjct: 1667 SKPSNTWGASDDWGK--LGSQSPTGKKKESPFNNWGSSQEQPNDSVAVQGWGSTKVDTSA 1724

Query: 898  -----SQAEARDCWGGLGEKTNTTGGWNAQKRPQDDPSDSWGGHVE--KANTTGQNGKEG 740
                 SQ E  + W  +G++             +  PS++WG   +  KA++   +G++ 
Sbjct: 1725 EKDVLSQLEKENPWDKVGDQAT-----------ESKPSNAWGSSADWGKADSQSPSGQKQ 1773

Query: 739  NGQWNQWSEPPK--NET 695
               +N WS   K  NET
Sbjct: 1774 ESSFNNWSSRQKQSNET 1790


>ref|XP_010509007.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit
            1-like [Camelina sativa]
          Length = 1834

 Score = 98.2 bits (243), Expect(2) = 5e-32
 Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
 Frame = -2

Query: 632  NQWI-LKFGVLCVGSTEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNN 456
            N W+ LK         ++ + W      P K F   +N S  GW +    DWK K   N+
Sbjct: 1585 NPWVSLKETKSRENDDKERIQWGN----PAKKFP--SNGSHGGWSNGGGADWKGKR--NH 1636

Query: 455  LQGTPDDQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPL 276
                P  +S  N + ++TATRQRLD FT+EEQ  LS+V+ ++  +RKIM  S   DG P+
Sbjct: 1637 TPRPP--RSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHLSGYPDGDPI 1694

Query: 275  SAEDQANVLENVFKYHPDKDVKMGCGIDHVMV 180
            S +D+  VLE +  +HP+K+ K+G G+D + V
Sbjct: 1695 SDDDKTFVLEKILNFHPEKEKKLGSGVDFITV 1726



 Score = 69.3 bits (168), Expect(2) = 5e-32
 Identities = 65/285 (22%), Positives = 103/285 (36%), Gaps = 49/285 (17%)
 Frame = -3

Query: 1396 WNTNKQPSLKNPNSSAPGGWNTKSQPSQNDPNNSWGGLA--EKGISTGGWNTKK---QPS 1232
            W  +   S  N  S  P    +K+   + DP ++W      EK  +  GWNTKK   + S
Sbjct: 1300 WEKSSSSSWDNGCSGGPEWGVSKNTGGEADPESNWEKTTHVEKEDAWSGWNTKKDAQESS 1359

Query: 1231 QDDPNDSWGGQV--EKANTPDGWNTKTQ------PSQAEP-RDSWG--GLVEKTNTTGGW 1085
            + D   +WG +   + ANT   W T+        P  +EP  D WG   + +K+     W
Sbjct: 1360 KSDSGGAWGLKTKDDDANTTPNWETRPAHTDSIVPENSEPSSDVWGLKSVSDKSWEKKNW 1419

Query: 1084 NT-------------------KMQSSQDEPRGSWGEQVEK-------ANTTAGWNTKTQP 983
             T                   KM S  +    +WG + +K       A     WN K+  
Sbjct: 1420 GTESAPAAWGSTDAAVWGSSSKMNSETESDAAAWGSKDKKNSYIGSGAGVLGPWNKKSLE 1479

Query: 982  SQVEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLGEKTNTT-------GGWNAQ 824
            ++ +   +WG   +            R +     D WG   +K + T       G W+ +
Sbjct: 1480 TESD-SATWGSSDKTKSGAAAWSSWDRKNM--ETDAWGSQVKKKSDTESGPAAWGAWDTK 1536

Query: 823  KRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEPPKNETDH 689
            K   +     WG   +K + T    + G   W  W +P     D+
Sbjct: 1537 KSETESGLAGWGTADKKNSET----ESGPAAWGSWGQPSPTAADN 1577


>gb|KDO53583.1| hypothetical protein CISIN_1g0002912mg, partial [Citrus sinensis]
          Length = 734

 Score =  117 bits (293), Expect(2) = 2e-31
 Identities = 67/138 (48%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
 Frame = -2

Query: 590 TEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGG-PNNLQGTPDDQSRLNAS 414
           TE +V    RKEP          K + GW SS+ G+WK K   P    G  +D S +NA 
Sbjct: 534 TEMQVWGQSRKEP---------FKKNRGWASSS-GEWKGKKNRPPRSPGVVNDDSTVNA- 582

Query: 413 GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
            +YT TRQRLD FT+EEQ  LS+V+ I+ +IR+IM QS   DG  LSA+D++ + +NVF 
Sbjct: 583 -MYTVTRQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFN 641

Query: 233 YHPDKDVKMGCGIDHVMV 180
           YHPDK +KMG GIDH  V
Sbjct: 642 YHPDKAMKMGAGIDHFKV 659



 Score = 48.1 bits (113), Expect(2) = 2e-31
 Identities = 62/282 (21%), Positives = 95/282 (33%), Gaps = 50/282 (17%)
 Frame = -3

Query: 1399 GWNT---------NKQPSLKNPNSSAPGGWNTKS--------QPSQNDP----NNSWGGL 1283
            GW T         +K  ++ +P + +   W T++        +P    P    ++ WG  
Sbjct: 238  GWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSE 297

Query: 1282 AEKGISTGGWNTKKQPSQDDPNDSWGGQVEKANTPDGWNTKTQPSQAEPRDSWGG----- 1118
            A  G S+G        S   P   WG +     + +    + + + A+P  +WG      
Sbjct: 298  ASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWD 357

Query: 1117 -----LVEKT-----NTTGGWNTKMQSSQDEPRGSWGEQVEKANTTAGW--NTKTQPSQV 974
                  +EK      N   GW T+ Q S       W E  + AN TA W  N   + S  
Sbjct: 358  KSSEVTLEKVAAPAENPLSGWGTEAQDSGKS--SDWSEWKDHANATASWGRNGSEENSGW 415

Query: 973  EPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLG----------EKT--NTTGGWN 830
            +   SW                  SS   AR+ +   G          EK+  +  GGWN
Sbjct: 416  DTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWN 475

Query: 829  AQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEPPK 704
                   D S  WG      N  G +      Q +  +E P+
Sbjct: 476  VPDAKGTDDS-CWGKQKLTENAKGTDDSSWGKQKHTENESPQ 516


>ref|XP_010512942.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Camelina
            sativa]
          Length = 1429

 Score = 95.9 bits (237), Expect(2) = 2e-31
 Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
 Frame = -2

Query: 632  NQWI-LKFGVLCVGSTEKEVHWSQRKEPPVKPFAWGTNKSSHG-WGSSNTGDWKNKGGPN 459
            N W+ LK         ++ + W      P K F    +  SHG W +    DWK K   N
Sbjct: 1180 NPWVSLKETKSRENDDKERIQWGN----PAKKFP---SNGSHGSWSNGGGADWKGKR--N 1230

Query: 458  NLQGTPDDQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKP 279
            +    P  +S  N + ++TATRQRLD FT+EEQ  LS+V+ ++  +RKIM  S   DG P
Sbjct: 1231 HTPRPP--RSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHLSGYPDGDP 1288

Query: 278  LSAEDQANVLENVFKYHPDKDVKMGCGIDHVMV 180
            +S +D+  VLE +  +HP+K+ K+G G+D + V
Sbjct: 1289 ISDDDKTFVLEKILNFHPEKEKKLGSGVDFITV 1321



 Score = 69.3 bits (168), Expect(2) = 2e-31
 Identities = 68/286 (23%), Positives = 102/286 (35%), Gaps = 51/286 (17%)
 Frame = -3

Query: 1393 NTNKQPSLKNPNSSAPGGWNTKSQPSQNDPNNSWGGLA--EKGISTGGWNTKK---QPSQ 1229
            N  K  S  N  S  P    +K+   + DP ++W      EK  +  GWNTKK   + S+
Sbjct: 892  NWEKSSSWDNGCSGGPEWGVSKNTGGEADPESNWEKTTHVEKEDAWSGWNTKKDAQESSK 951

Query: 1228 DDPNDSWGGQV--EKANTPDGWNTKTQ------PSQAEP-RDSWG--GLVEKTNTTGGWN 1082
             D   +WG +   + ANT   W T+        P   EP  D WG   + EK+     W 
Sbjct: 952  SDSGGAWGLKTKDDDANTTPNWGTRPAHTDSIVPENTEPSSDDWGLKSVSEKSWEKKNWG 1011

Query: 1081 T-------------------KMQSSQDEPRGSWGEQVEK-------ANTTAGWNTKTQPS 980
            T                   KM S  +    +WG + +K       A     WN K+  +
Sbjct: 1012 TESAPAAWGSTDAAVWGSSSKMNSETESDAAAWGSKDKKNSYIGSGAGVLGPWNKKSLET 1071

Query: 979  QVEPDDSWGGLVEXXXXXXXXXXXTRSSQA--EARDCWGGLGEKTNTT-------GGWNA 827
            + +   +WG   +            R +       D WG   +K + T       G W+ 
Sbjct: 1072 ESD-SATWGSSDKTKSGAAAWSSRDRKNMETDSEPDAWGSQVKKKSDTESGPAAWGAWDT 1130

Query: 826  QKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEPPKNETDH 689
            +K   D     WG   +K + T    + G   W  W +P     D+
Sbjct: 1131 KKSETDLGLAGWGTGDKKNSET----ESGPAAWGSWGQPSPTAADN 1172



 Score = 64.7 bits (156), Expect = 2e-07
 Identities = 68/255 (26%), Positives = 104/255 (40%), Gaps = 27/255 (10%)
 Frame = -3

Query: 1399 GWNTNKQPSLKNPNSSAPGGWNTKSQPSQNDPNNSWGGLA--EKGISTGGWNTKKQPSQD 1226
            G N  K  S     S       +++   + DP ++W      EK  +  GWNTKK   + 
Sbjct: 827  GSNWEKSSSWDKGCSGGSEWGFSRNTGGEADPESNWEKTTNVEKEDALSGWNTKKDAQES 886

Query: 1225 DPNDS-WGGQVEKANT--------PDGWNTKTQPSQAEPRDSWGGL--VEKTNTTGGWNT 1079
              ++S W    EK+++        P+   +K    +A+P  +W     VEK +   GWNT
Sbjct: 887  SKSESNW----EKSSSWDNGCSGGPEWGVSKNTGGEADPESNWEKTTHVEKEDAWSGWNT 942

Query: 1078 K---MQSSQDEPRGSWGEQV--EKANTTAGWNTKTQ------PSQVEP-DDSWGGLVEXX 935
            K    +SS+ +  G+WG +   + ANTT  W T+        P   EP  D WG      
Sbjct: 943  KKDAQESSKSDSGGAWGLKTKDDDANTTPNWGTRPAHTDSIVPENTEPSSDDWGLKSVSE 1002

Query: 934  XXXXXXXXXTRSSQAEARDCWGGLGEKTNTTGGWNAQKRPQDDPSD--SWGGHVEKANTT 761
                     T S+ A     WG     T+     ++ K   +  SD  +WG   +K N+ 
Sbjct: 1003 KSWEKKNWGTESAPA----AWG----STDAAVWGSSSKMNSETESDAAAWGSK-DKKNSY 1053

Query: 760  GQNGKEGNGQWNQWS 716
              +G    G WN+ S
Sbjct: 1054 IGSGAGVLGPWNKKS 1068


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  116 bits (291), Expect(2) = 3e-31
 Identities = 67/138 (48%), Positives = 85/138 (61%), Gaps = 1/138 (0%)
 Frame = -2

Query: 590  TEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGG-PNNLQGTPDDQSRLNAS 414
            TE +V    RKEP          K + GW SS+ G+WK K   P    G  +D S +NA 
Sbjct: 1665 TEMQVWGQSRKEP---------FKKNRGWASSS-GEWKGKKNRPPRSPGVVNDDSTVNA- 1713

Query: 413  GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
             +YT TRQRLD FT+EEQ  LS V+ I+ +IR+IM QS   DG  LSA+D++ + +NVF 
Sbjct: 1714 -MYTVTRQRLDMFTSEEQDILSHVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFN 1772

Query: 233  YHPDKDVKMGCGIDHVMV 180
            YHPDK +KMG GIDH  V
Sbjct: 1773 YHPDKAMKMGAGIDHFKV 1790



 Score = 48.1 bits (113), Expect(2) = 3e-31
 Identities = 62/282 (21%), Positives = 95/282 (33%), Gaps = 50/282 (17%)
 Frame = -3

Query: 1399 GWNT---------NKQPSLKNPNSSAPGGWNTKS--------QPSQNDP----NNSWGGL 1283
            GW T         +K  ++ +P + +   W T++        +P    P    ++ WG  
Sbjct: 1369 GWGTEASWGESSCDKWENVGSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGSE 1428

Query: 1282 AEKGISTGGWNTKKQPSQDDPNDSWGGQVEKANTPDGWNTKTQPSQAEPRDSWGG----- 1118
            A  G S+G        S   P   WG +     + +    + + + A+P  +WG      
Sbjct: 1429 ASWGKSSGDRQENVGGSASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWD 1488

Query: 1117 -----LVEKT-----NTTGGWNTKMQSSQDEPRGSWGEQVEKANTTAGW--NTKTQPSQV 974
                  +EK      N   GW T+ Q S       W E  + AN TA W  N   + S  
Sbjct: 1489 KSSEVTLEKVAAPAENPLSGWGTEAQDSGKS--SDWSEWKDHANATASWGRNGSEENSGW 1546

Query: 973  EPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLG----------EKT--NTTGGWN 830
            +   SW                  SS   AR+ +   G          EK+  +  GGWN
Sbjct: 1547 DTKASWKTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGWN 1606

Query: 829  AQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEPPK 704
                   D S  WG      N  G +      Q +  +E P+
Sbjct: 1607 VPDAKGTDDS-CWGKQKLTENAKGTDDSSWGKQKHTENESPQ 1647


>emb|CDY60335.1| BnaC03g72290D [Brassica napus]
          Length = 1869

 Score =  102 bits (254), Expect(2) = 2e-30
 Identities = 60/151 (39%), Positives = 86/151 (56%)
 Frame = -2

Query: 632  NQWILKFGVLCVGSTEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNL 453
            N W+    +    S +KE + + +   P K +    ++S  G G +   DWK    P   
Sbjct: 1609 NPWV---SLKATSSGDKEGNETSQWGVPNKRYPSAGSQSQGGGGGA---DWKRNRPPR-- 1660

Query: 452  QGTPDDQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLS 273
              TP  +S L    ++TATRQR+D FT+EEQ  LS+VD ++  +RKIM QS   DG+P+S
Sbjct: 1661 --TPGSESILGP--MFTATRQRVDMFTSEEQELLSDVDPVMRRLRKIMHQSGYTDGEPIS 1716

Query: 272  AEDQANVLENVFKYHPDKDVKMGCGIDHVMV 180
             ED+  VLE +  YHPDKD K+G G+D + V
Sbjct: 1717 DEDKTYVLEQILNYHPDKDAKLGPGLDFITV 1747



 Score = 60.1 bits (144), Expect(2) = 2e-30
 Identities = 57/263 (21%), Positives = 95/263 (36%), Gaps = 40/263 (15%)
 Frame = -3

Query: 1360 NSSAPGGWNTKSQPSQNDPNNSWGGLAEK-----GISTGGWNTKKQPSQDD--------- 1223
            N  A  GWN+K    +    +SWG    K       +T  W TK  P+Q+D         
Sbjct: 1353 NEDASSGWNSKKDAQEATNTDSWGAWGSKTKDDAENATPNWGTK--PAQNDSVVIENGEP 1410

Query: 1222 PNDSWGGQVEKANTPDGWNTKTQPSQAEPRDSWGGLVEKTNTTGGWNTKMQSSQDEPRGS 1043
             +D WG    KA +   W  K   ++  P  +WG    ++  T G   K +   +    +
Sbjct: 1411 SSDVWG---PKAVSDKPWGKKNSETEPAPA-AWGKTNSESGATWGSRDKSKFETESGGAA 1466

Query: 1042 WGEQVEKANTT------AGWNT----KTQPSQVEPDDSWGGLVEXXXXXXXXXXXTRSSQ 893
            WG Q +  + T      A W T    K++        +WG   +           + +  
Sbjct: 1467 WGSQAKNNSETEPGSGAAAWGTWDKKKSETESGGGGAAWGSQAK---------NNSETES 1517

Query: 892  AEARDCWGGLGEKTNTTGG--WNAQKRPQDDP---SDSWG----GHVEKANTTGQNGKEG 740
                  WG    +T + GG  W +Q +   +    + +WG     + E  + +   GK+ 
Sbjct: 1518 GSGAAAWGKKKPETESGGGAAWGSQAKKNSESQLGAANWGSKDTNNSENGSDSAAWGKKK 1577

Query: 739  NGQ-------WNQWSEPPKNETD 692
            N +       W  W +P    +D
Sbjct: 1578 NSEAEPTSVAWGSWGQPSPPASD 1600


>ref|XP_010246063.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Nelumbo nucifera]
            gi|720093477|ref|XP_010246064.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Nelumbo nucifera]
            gi|720093480|ref|XP_010246066.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Nelumbo nucifera]
          Length = 1908

 Score =  135 bits (340), Expect = 9e-29
 Identities = 73/146 (50%), Positives = 91/146 (62%), Gaps = 9/146 (6%)
 Frame = -2

Query: 590  TEKEVHWSQRKEPPVKPFAWGTN---------KSSHGWGSSNTGDWKNKGGPNNLQGTPD 438
            +E  + W Q    P+K   WGTN          SS  WGS   GDWKNK   N   G  D
Sbjct: 1706 SEAHLQWGQSSGSPIKSHGWGTNVMKKPLKQPTSSRTWGS---GDWKNK--KNRTPGKLD 1760

Query: 437  DQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQA 258
              +  N+SGI+T  RQR D FT+EEQ+ LS+++ I+ +I++IM QSR  DG  LS EDQ+
Sbjct: 1761 SGNDCNSSGIFTVNRQRFDVFTSEEQNILSKIEPIMQSIKRIMHQSRYNDGDRLSIEDQS 1820

Query: 257  NVLENVFKYHPDKDVKMGCGIDHVMV 180
             VLENVF YHPDK +KMG GID+VMV
Sbjct: 1821 FVLENVFNYHPDKAIKMGDGIDYVMV 1846


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  124 bits (310), Expect(2) = 1e-28
 Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
 Frame = -2

Query: 590  TEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGG-PNNLQGTPDDQSRLNAS 414
            +E +  W Q      +P      + S GWGS+NT +WKNK   PN  QG  +D    +A 
Sbjct: 1676 SETQSQWGQPSGKKSRP------EGSRGWGSNNT-EWKNKKNRPNKPQGPLNDD--YSAG 1726

Query: 413  GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
            GI+TATRQR+D FT+EEQ  L +V+ I+ +IR+IM Q+   DG PLSA+DQ+ +L+ VF 
Sbjct: 1727 GIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFN 1786

Query: 233  YHPDKDVKMGCGIDHVMVCR 174
             HPDK VKMG GID+VMV R
Sbjct: 1787 NHPDKAVKMGTGIDYVMVSR 1806



 Score = 32.3 bits (72), Expect(2) = 1e-28
 Identities = 58/290 (20%), Positives = 95/290 (32%), Gaps = 55/290 (18%)
 Frame = -3

Query: 1402 GGW--NTNKQPSLKNPNSSAPGGWNTKS----------QPSQNDPNNSWGGLAEKGISTG 1259
            G W  N NK+ +      SA   W T            +P ++  +  W      G    
Sbjct: 1380 GDWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWDDKGTWGTDKA 1439

Query: 1258 GWNTKKQPSQDDPNDS-----------------WGGQVEKANTPDGWNTKT-QPSQAEPR 1133
                 ++  +D P  S                 WG ++++A+   GWN    +P   + R
Sbjct: 1440 QNTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWGKKIDEADKT-GWNKNDGKPQMDKLR 1498

Query: 1132 DS--WGGLV--EKT---------NTTGGWNT---KMQSSQDEP----RGSWG-----EQV 1028
            +S  W   V  EKT         +TTG W     +M+  Q +       SW      + +
Sbjct: 1499 ESYDWDCKVAQEKTTQSTYGGISSTTGDWKKNELQMEVVQHDESPVNEHSWDANLPEDPL 1558

Query: 1027 EKANTTAGWNTKTQPSQVEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLGEKTN 848
             +A T+ GW++ T     +                      +S   + RD         +
Sbjct: 1559 AQATTSVGWDSSTGKDWTK-------------------RKLQSPSEQQRD-----PAIKS 1594

Query: 847  TTGGWNAQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEPPKNE 698
             +   N  K   + P+ + G   +     G N  E   QWNQ     KN+
Sbjct: 1595 WSSSHNVMKEQSNQPASTHGW--DSPGAKGWNDVEEQSQWNQRGSAVKND 1642


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Vitis vinifera]
            gi|731435545|ref|XP_010645605.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  124 bits (310), Expect(2) = 1e-28
 Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
 Frame = -2

Query: 590  TEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGG-PNNLQGTPDDQSRLNAS 414
            +E +  W Q      +P      + S GWGS+NT +WKNK   PN  QG  +D    +A 
Sbjct: 1616 SETQSQWGQPSGKKSRP------EGSRGWGSNNT-EWKNKKNRPNKPQGPLNDD--YSAG 1666

Query: 413  GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
            GI+TATRQR+D FT+EEQ  L +V+ I+ +IR+IM Q+   DG PLSA+DQ+ +L+ VF 
Sbjct: 1667 GIFTATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFN 1726

Query: 233  YHPDKDVKMGCGIDHVMVCR 174
             HPDK VKMG GID+VMV R
Sbjct: 1727 NHPDKAVKMGTGIDYVMVSR 1746



 Score = 32.3 bits (72), Expect(2) = 1e-28
 Identities = 58/290 (20%), Positives = 95/290 (32%), Gaps = 55/290 (18%)
 Frame = -3

Query: 1402 GGW--NTNKQPSLKNPNSSAPGGWNTKS----------QPSQNDPNNSWGGLAEKGISTG 1259
            G W  N NK+ +      SA   W T            +P ++  +  W      G    
Sbjct: 1320 GDWAVNQNKETTASTLKPSAWSSWGTDKVTMKDTFSTREPDESSRSAGWDDKGTWGTDKA 1379

Query: 1258 GWNTKKQPSQDDPNDS-----------------WGGQVEKANTPDGWNTKT-QPSQAEPR 1133
                 ++  +D P  S                 WG ++++A+   GWN    +P   + R
Sbjct: 1380 QNTAFRRTHEDSPRSSGRDETFRDGRPQFASSAWGKKIDEADKT-GWNKNDGKPQMDKLR 1438

Query: 1132 DS--WGGLV--EKT---------NTTGGWNT---KMQSSQDEP----RGSWG-----EQV 1028
            +S  W   V  EKT         +TTG W     +M+  Q +       SW      + +
Sbjct: 1439 ESYDWDCKVAQEKTTQSTYGGISSTTGDWKKNELQMEVVQHDESPVNEHSWDANLPEDPL 1498

Query: 1027 EKANTTAGWNTKTQPSQVEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLGEKTN 848
             +A T+ GW++ T     +                      +S   + RD         +
Sbjct: 1499 AQATTSVGWDSSTGKDWTK-------------------RKLQSPSEQQRD-----PAIKS 1534

Query: 847  TTGGWNAQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEPPKNE 698
             +   N  K   + P+ + G   +     G N  E   QWNQ     KN+
Sbjct: 1535 WSSSHNVMKEQSNQPASTHGW--DSPGAKGWNDVEEQSQWNQRGSAVKND 1582


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score =  132 bits (333), Expect = 6e-28
 Identities = 71/137 (51%), Positives = 92/137 (67%)
 Frame = -2

Query: 584  KEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNLQGTPDDQSRLNASGIY 405
            ++  W Q+     + F     + S GWGS+N GDWKNK    N    P +   LNASGI+
Sbjct: 1724 RDQQWGQQS----REFKKDRFEGSRGWGSNN-GDWKNK---RNRPSKPHED--LNASGIF 1773

Query: 404  TATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFKYHP 225
            T TRQRLD FT++EQ  LS+++ ++L+IR+IM Q+   DG PLSA+DQ+ VL+NVF YHP
Sbjct: 1774 TTTRQRLDVFTSQEQDILSDIEPLMLSIRRIMHQTGYNDGDPLSADDQSYVLDNVFHYHP 1833

Query: 224  DKDVKMGCGIDHVMVCR 174
            DK VKMG GIDHV V R
Sbjct: 1834 DKAVKMGAGIDHVTVSR 1850


>ref|XP_013628526.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X1
            [Brassica oleracea var. oleracea]
          Length = 2056

 Score =  103 bits (257), Expect(2) = 7e-28
 Identities = 61/151 (40%), Positives = 86/151 (56%)
 Frame = -2

Query: 632  NQWILKFGVLCVGSTEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNL 453
            N W+    +    S EKE + + +   P K +    ++S  G G +   DWK    P   
Sbjct: 1787 NPWV---SLKATNSGEKEGNETSQWGVPNKRYPSAGSQSQGGGGGA---DWKRNRPPR-- 1838

Query: 452  QGTPDDQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLS 273
              TP  +S L    ++TATRQR+D FT+EEQ  LS+VD ++  +RKIM QS   DG+P+S
Sbjct: 1839 --TPGSESILGP--MFTATRQRVDMFTSEEQELLSDVDPVMRRLRKIMHQSGYTDGEPIS 1894

Query: 272  AEDQANVLENVFKYHPDKDVKMGCGIDHVMV 180
             ED+  VLE +  YHPDKD K+G G+D + V
Sbjct: 1895 DEDKTYVLEQILNYHPDKDAKLGPGLDFITV 1925



 Score = 50.1 bits (118), Expect(2) = 7e-28
 Identities = 60/269 (22%), Positives = 105/269 (39%), Gaps = 31/269 (11%)
 Frame = -3

Query: 1405 TGGWNTNKQPSLKNPNSSAPGGWNTKSQPSQNDPNNSWGGLAEKG---ISTGG--WNTK- 1244
            +GG +   +    +   S  GGW ++++  +N    +  G  +K      +GG  W ++ 
Sbjct: 1516 SGGADWGIRGKRVSETESGAGGWASRNRSLENQSGGATWGSRDKSKFETESGGAAWGSQA 1575

Query: 1243 KQPSQDDPND---SWG-GQVEKANTPDGWNTKTQPSQAEPRDSWGGLVEKTNTTGGWNT- 1079
            K  S+ +P     +WG    +K  T  G       SQA+         E  ++   W T 
Sbjct: 1576 KNNSETEPGSGAAAWGTWDKKKPETETGGGGAAWGSQAKNNSE----TESGSSAAAWGTW 1631

Query: 1078 -KMQSSQDEPRGSWGEQVEKANTT---AGWNTKTQPSQVEPDDSWGGLVEXXXXXXXXXX 911
             K +S  +   G+WG Q +K + T   AG +T     + +P+   GG             
Sbjct: 1632 DKKKSETELVDGAWGSQAKKNSETESGAGASTWGAWDKKKPETETGGGGAAWGSQAKNNS 1691

Query: 910  XTRSSQAEARDCWGGLGEKTNTTGG--WNAQKRPQDDP---SDSWG----GHVEKANTTG 758
             T S    A   WG    +T++ GG  W +Q +   +    + +WG     + E  + + 
Sbjct: 1692 ETESGSGGA--AWGKKKSETDSGGGAAWGSQAKKNSESQLGAANWGSKNTNNSENGSDSA 1749

Query: 757  QNGKEGNGQ-------WNQWSEPPKNETD 692
              GK+ N +       W  W +P    +D
Sbjct: 1750 AWGKKKNSEAEPTSVAWGSWGQPSPPASD 1778


>ref|XP_010412959.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Camelina
            sativa]
          Length = 1920

 Score = 95.9 bits (237), Expect(2) = 7e-28
 Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
 Frame = -2

Query: 632  NQWI-LKFGVLCVGSTEKEVHWSQRKEPPVKPFAWGTNKSSHG-WGSSNTGDWKNKGGPN 459
            N W+ LK         ++ + W      P K F    +  SHG W +    DWK K   N
Sbjct: 1611 NPWVSLKETKSRENDDKERIQWGN----PAKKFP---SNGSHGSWSNGGGADWKGKR--N 1661

Query: 458  NLQGTPDDQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKP 279
            +    P  +S  N + ++TATRQRLD FT+EEQ  LS+V+ ++  +RKIM  S   DG P
Sbjct: 1662 HTPRPP--RSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHLSGYPDGDP 1719

Query: 278  LSAEDQANVLENVFKYHPDKDVKMGCGIDHVMV 180
            +S +D+  VLE +  +HP+K+ K+G G+D + V
Sbjct: 1720 ISDDDKTFVLEKILNFHPEKEKKLGSGVDFITV 1752



 Score = 57.8 bits (138), Expect(2) = 7e-28
 Identities = 59/284 (20%), Positives = 100/284 (35%), Gaps = 47/284 (16%)
 Frame = -3

Query: 1399 GWNTNKQPSLKNPNSSAPGGWNTKSQPSQNDPN--------------------NSWG--G 1286
            GWNT K     + + S   G  TK   +   PN                    + WG   
Sbjct: 1337 GWNTKKDAQESSKSDSGAWGLKTKDDDANTTPNWETRPAHTDSIVPENSEPSSDVWGLKS 1396

Query: 1285 LAEKGISTGGWNTKKQPSQDDPNDS--WGGQVEKANTPDGWNTKTQPSQAEPRDSWGGLV 1112
            +++K      W T+  P+     D+  WG   +        N++T+   A    +WG   
Sbjct: 1397 VSDKSWEKKNWGTESAPAAWGSTDAAVWGSSSK-------MNSETESDAA----AWGSKD 1445

Query: 1111 EKTN-------TTGGWNTKMQSSQDEPRGSWGEQVEKANTTAGWNT---KTQPSQVEPDD 962
            +K +         G WN K   ++ +   +WG   +  +  A W++   K   +  EP D
Sbjct: 1446 KKNSYIGSGAGVLGPWNKKSLETESD-SATWGSSDKTKSGAAAWSSRDRKNMETDSEP-D 1503

Query: 961  SWGGLVE-----XXXXXXXXXXXTRSSQAEARDCWGGLGEKTNTT--------GGWNAQK 821
            +WG  V+                T+ S+ +      G G+K N+         G W+ +K
Sbjct: 1504 AWGSQVKKKSDTESGPAAWGAWDTKKSETDLGLAGWGTGDKKNSETESGPAAWGAWDTKK 1563

Query: 820  RPQDDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSEPPKNETDH 689
               +     WG   +K + T    + G   W  W +P     D+
Sbjct: 1564 SETESGLAGWGTGDKKNSET----ESGPAAWGSWGQPSPTAADN 1603



 Score = 67.4 bits (163), Expect = 3e-08
 Identities = 67/258 (25%), Positives = 105/258 (40%), Gaps = 24/258 (9%)
 Frame = -3

Query: 1393 NTNKQPSLKNPNSSAPGGWNTKSQPSQNDPNNSWGGL--AEKGISTGGWNTKKQPSQDDP 1220
            N  K  S  N  S  P    +K+   + DP ++W      EK  +  GWNTKK   +   
Sbjct: 1290 NWEKSSSWDNGCSGGPEWGVSKNTGGEADPESNWEKTTHVEKEDAWTGWNTKKDAQESSK 1349

Query: 1219 NDS--WGGQV--EKANTPDGWNTKTQ------PSQAEP-RDSWGGLVEKTNTTGGWNTKM 1073
            +DS  WG +   + ANT   W T+        P  +EP  D WG    K+ +   W  K 
Sbjct: 1350 SDSGAWGLKTKDDDANTTPNWETRPAHTDSIVPENSEPSSDVWG---LKSVSDKSWEKKN 1406

Query: 1072 QSSQDEPRGSWGEQVEKANTTAGWNTKTQ-PSQVEPD-DSWGGLVE-----XXXXXXXXX 914
              ++  P  +WG     +   A W + ++  S+ E D  +WG   +              
Sbjct: 1407 WGTESAP-AAWG-----STDAAVWGSSSKMNSETESDAAAWGSKDKKNSYIGSGAGVLGP 1460

Query: 913  XXTRSSQAEARDCWGGLGEKTNT-TGGWNAQKRPQ---DDPSDSWGGHVEKANTTGQNGK 746
               +S + E+     G  +KT +    W+++ R     D   D+WG  V+K + T    +
Sbjct: 1461 WNKKSLETESDSATWGSSDKTKSGAAAWSSRDRKNMETDSEPDAWGSQVKKKSDT----E 1516

Query: 745  EGNGQWNQWSEPPKNETD 692
             G   W  W +  K+ETD
Sbjct: 1517 SGPAAWGAW-DTKKSETD 1533


>ref|XP_011655250.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Cucumis sativus]
            gi|778702723|ref|XP_011655251.1| PREDICTED: DNA-directed
            RNA polymerase V subunit 1 [Cucumis sativus]
            gi|700195913|gb|KGN51090.1| hypothetical protein
            Csa_5G435050 [Cucumis sativus]
          Length = 1963

 Score =  131 bits (329), Expect = 2e-27
 Identities = 73/154 (47%), Positives = 93/154 (60%), Gaps = 16/154 (10%)
 Frame = -2

Query: 587  EKEVHWSQRKEPPVKPFAWGTNK------SSHGWGSSN---------TGDWKN-KGGPNN 456
            E  + W Q+K P V    WG+NK      SSHGW   N          G+WKN K  P  
Sbjct: 1725 ETSLGWEQQKSPEVS-HGWGSNKESSEQTSSHGWDKKNQGSKGWGGNAGEWKNRKNRPPK 1783

Query: 455  LQGTPDDQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPL 276
              G  +D + L A  +YTA+ QRLD FT+EEQ  L++++ I+ +IRK+M QS   DG PL
Sbjct: 1784 SPGMSNDDANLRA--LYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMHQSGYNDGDPL 1841

Query: 275  SAEDQANVLENVFKYHPDKDVKMGCGIDHVMVCR 174
            SAEDQ+ VL++VF +HPDK  KMG GIDH MV R
Sbjct: 1842 SAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSR 1875


>ref|XP_013628527.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 isoform X2
            [Brassica oleracea var. oleracea]
          Length = 2041

 Score =  103 bits (257), Expect(2) = 3e-27
 Identities = 61/151 (40%), Positives = 86/151 (56%)
 Frame = -2

Query: 632  NQWILKFGVLCVGSTEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNL 453
            N W+    +    S EKE + + +   P K +    ++S  G G +   DWK    P   
Sbjct: 1772 NPWV---SLKATNSGEKEGNETSQWGVPNKRYPSAGSQSQGGGGGA---DWKRNRPPR-- 1823

Query: 452  QGTPDDQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLS 273
              TP  +S L    ++TATRQR+D FT+EEQ  LS+VD ++  +RKIM QS   DG+P+S
Sbjct: 1824 --TPGSESILGP--MFTATRQRVDMFTSEEQELLSDVDPVMRRLRKIMHQSGYTDGEPIS 1879

Query: 272  AEDQANVLENVFKYHPDKDVKMGCGIDHVMV 180
             ED+  VLE +  YHPDKD K+G G+D + V
Sbjct: 1880 DEDKTYVLEQILNYHPDKDAKLGPGLDFITV 1910



 Score = 47.8 bits (112), Expect(2) = 3e-27
 Identities = 60/260 (23%), Positives = 99/260 (38%), Gaps = 22/260 (8%)
 Frame = -3

Query: 1405 TGGWNTNKQPSLKNPNSSAPGGWNTKSQPSQNDPNNSWGGLAEKG---ISTGG--WNTK- 1244
            +GG +   +    +   S  GGW ++++  +N    +  G  +K      +GG  W ++ 
Sbjct: 1516 SGGADWGIRGKRVSETESGAGGWASRNRSLENQSGGATWGSRDKSKFETESGGAAWGSQA 1575

Query: 1243 KQPSQDDPND---SWG-GQVEKANTPDGWNTKTQPSQAEPRDSWGGLVEKTNTTGGWNT- 1079
            K  S+ +P     +WG    +K  T  G       SQA+         E  ++   W T 
Sbjct: 1576 KNNSETEPGSGAAAWGTWDKKKPETETGGGGAAWGSQAKNNSE----TESGSSAAAWGTW 1631

Query: 1078 -KMQSSQDEPRGSWGEQVEKANTT---AGWNTKTQPSQVEPDDSWGGLVEXXXXXXXXXX 911
             K +S  +   G+WG Q +K + T   AG +T     + +P+   GG             
Sbjct: 1632 DKKKSETELVDGAWGSQAKKNSETESGAGASTWGAWDKKKPETETGGGGAAWGSQAKNNS 1691

Query: 910  XTRSSQAEARDCWGGLGEKTNTT-------GGWNAQKRPQDDPSDSWGGHVEKANTTGQN 752
             T S    A   WG   +K + +       G  N         S +WG   +K N+  + 
Sbjct: 1692 ETESGSGGA--AWGSQAKKNSESQLGAANWGSKNTNNSENGSDSAAWG---KKKNSEAEP 1746

Query: 751  GKEGNGQWNQWSEPPKNETD 692
                 G W Q S PP ++ D
Sbjct: 1747 TSVAWGSWGQPS-PPASDKD 1765


>ref|XP_009133402.1| PREDICTED: DNA-directed RNA polymerase V subunit 1 [Brassica rapa]
          Length = 2059

 Score =  101 bits (251), Expect(2) = 4e-27
 Identities = 59/151 (39%), Positives = 86/151 (56%)
 Frame = -2

Query: 632  NQWILKFGVLCVGSTEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNL 453
            N W+    +    S EKE + + +   P K +    ++S  G G +   DWK    P   
Sbjct: 1781 NPWV---SLKATNSGEKEGNETSQWGVPNKRYPSAGSQSQGGGGGA---DWKRNRPPR-- 1832

Query: 452  QGTPDDQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLS 273
              TP  +S +    ++TATRQR+D FT+EEQ  LS+VD ++  +RKIM QS   DG+P+S
Sbjct: 1833 --TPGSESIMGP--MFTATRQRVDMFTSEEQELLSDVDPVMRRLRKIMHQSGYTDGEPIS 1888

Query: 272  AEDQANVLENVFKYHPDKDVKMGCGIDHVMV 180
             ED+  VLE +  YHP+KD K+G G+D + V
Sbjct: 1889 DEDKTYVLEQILNYHPEKDAKLGPGLDFITV 1919



 Score = 49.7 bits (117), Expect(2) = 4e-27
 Identities = 58/291 (19%), Positives = 99/291 (34%), Gaps = 54/291 (18%)
 Frame = -3

Query: 1402 GGWNTNKQPSLKNPNSSAPGGWNTKSQPSQN---DPNNSWGGLAEKGISTGGW------- 1253
            G W +  +     P  +A G W  KS  + +   D  N    ++E     GGW       
Sbjct: 1485 GAWGSGAKNKETEPAPAAWGSWGKKSSEAVSGGADWGNRGKRVSETESGAGGWASRNPSL 1544

Query: 1252 -----------NTKKQPSQDDPNDSWGGQV------EKANTPDGWNTKTQPSQAEPRDSW 1124
                         K +   +    +WG Q       E  +    W  K +P       +W
Sbjct: 1545 ETQSGGATWGSRDKSKFETESGGAAWGSQAKNNFESESGSGAAAWG-KKKPETESGGAAW 1603

Query: 1123 GGL------VEKTNTTGGWNT--KMQSSQDEPRGSWGEQVEKANTT---AGWNTKTQPSQ 977
            G        +E  +    W T  K +S  +   G+WG Q +K + T   AG +T     +
Sbjct: 1604 GSQAKNKSEIESGSGAAAWGTWDKKKSETESGGGAWGSQAKKNSETESGAGASTWGAWDK 1663

Query: 976  VEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLGEKTNTTGG--WNAQKRPQDDP 803
             +P+   GG  +           + +        WG    +T + GG  W +Q +   + 
Sbjct: 1664 KKPETESGG--DGAAWGSQAKNNSETESGSGAAAWGKKKPETESGGGAAWGSQAKKNSES 1721

Query: 802  ---SDSWG----GHVEKANTTGQNGKEGNGQ-------WNQWSEPPKNETD 692
               + +WG     + E  + +   GK+ N +       W  W +P    +D
Sbjct: 1722 QLGAANWGSKDTNNSENGSDSAAWGKKKNSEAEPTSVAWGSWGQPSPPASD 1772



 Score = 60.5 bits (145), Expect = 4e-06
 Identities = 56/216 (25%), Positives = 78/216 (36%), Gaps = 23/216 (10%)
 Frame = -3

Query: 1291 GGLAEKGISTGG-WNTKKQPSQDDPNDS-WG--GQVEKANTPDGWNTKTQPSQAEPRDSW 1124
            G L E G S+G  W   K    ++   S WG    +EK +   GWN+K    +A   DSW
Sbjct: 1316 GSLWENGCSSGSEWGVSKNAGGEENTQSGWGKAANIEKEDASSGWNSKKDAQEATNTDSW 1375

Query: 1123 GGLVEKT-----NTTGGWNTKMQSSQD------EPRGS-WGEQVEKANTTAGWNTKTQPS 980
            G    KT     N T  W TK   +        EP    WG    KA +   W  K   +
Sbjct: 1376 GAWGSKTKDDAENATPNWGTKPAQNDSVVIENGEPSSDVWG---PKAVSDKPWGKKNSET 1432

Query: 979  QVEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLGEKTNTT----GGWNA--QKR 818
            +  P  +WG               T S    A   WG   +K   T     GW +  +K 
Sbjct: 1433 EPAP-AAWG--------------KTNSESESAAAAWGSTNKKNTGTESDAAGWGSTNKKN 1477

Query: 817  PQ-DDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSE 713
            P+ +  + +WG   +   T     +     W  W +
Sbjct: 1478 PETESDAGAWGSGAKNKET-----EPAPAAWGSWGK 1508



 Score = 59.3 bits (142), Expect = 8e-06
 Identities = 65/287 (22%), Positives = 99/287 (34%), Gaps = 54/287 (18%)
 Frame = -3

Query: 1402 GGWNTNKQPSLKNPNSSAPGGWNTKSQPSQNDPNNSWGGLA------EKGISTGGWNTKK 1241
            GGW  ++ PSL+  +  A  G   KS+        +WG  A      E G     W  KK
Sbjct: 1535 GGW-ASRNPSLETQSGGATWGSRDKSKFETESGGAAWGSQAKNNFESESGSGAAAWG-KK 1592

Query: 1240 QPSQDDPNDSWGGQ------VEKANTPDGWNT--KTQPSQAEPRDSWGGLVEKTNTT--- 1094
            +P  +    +WG Q      +E  +    W T  K +        +WG   +K + T   
Sbjct: 1593 KPETESGGAAWGSQAKNKSEIESGSGAAAWGTWDKKKSETESGGGAWGSQAKKNSETESG 1652

Query: 1093 ------GGWNTKMQSSQDEPRG-SWGEQ------VEKANTTAGWNTKTQPSQVEPDDSWG 953
                  G W+ K   ++    G +WG Q       E  +  A W  K   ++     +WG
Sbjct: 1653 AGASTWGAWDKKKPETESGGDGAAWGSQAKNNSETESGSGAAAWGKKKPETESGGGAAWG 1712

Query: 952  GLVEXXXXXXXXXXXTRSSQAEARDCWGGL----GEKTNTTGGWNAQKRPQDDPSD---- 797
               +              SQ  A + WG       E  + +  W  +K  + +P+     
Sbjct: 1713 SQAK----------KNSESQLGAAN-WGSKDTNNSENGSDSAAWGKKKNSEAEPTSVAWG 1761

Query: 796  SWGGHVEKAN----------------TTGQNGKEGNGQWNQWSEPPK 704
            SWG     A+                 T    KEGN + +QW  P K
Sbjct: 1762 SWGQPSPPASDKDAQEDDGNPWVSLKATNSGEKEGN-ETSQWGVPNK 1807


>ref|XP_013734544.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like isoform X3
            [Brassica napus]
          Length = 2059

 Score =  101 bits (251), Expect(2) = 5e-27
 Identities = 59/151 (39%), Positives = 86/151 (56%)
 Frame = -2

Query: 632  NQWILKFGVLCVGSTEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNL 453
            N W+    +    S EKE + + +   P K +    ++S  G G +   DWK    P   
Sbjct: 1781 NPWV---SLKATNSGEKEGNETSQWGVPNKRYPSAGSQSQGGGGGA---DWKRNRPPR-- 1832

Query: 452  QGTPDDQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLS 273
              TP  +S +    ++TATRQR+D FT+EEQ  LS+VD ++  +RKIM QS   DG+P+S
Sbjct: 1833 --TPGSESIMGP--MFTATRQRVDMFTSEEQELLSDVDPVMRRLRKIMHQSGYTDGEPIS 1888

Query: 272  AEDQANVLENVFKYHPDKDVKMGCGIDHVMV 180
             ED+  VLE +  YHP+KD K+G G+D + V
Sbjct: 1889 DEDKTYVLEQILNYHPEKDAKLGPGLDFITV 1919



 Score = 49.3 bits (116), Expect(2) = 5e-27
 Identities = 58/298 (19%), Positives = 99/298 (33%), Gaps = 61/298 (20%)
 Frame = -3

Query: 1402 GGWNTNKQPSLKNPNSSAPGGWNTKSQPSQN---DPNNSWGGLAEKGISTGGW------- 1253
            G W +  +     P  +A G W  KS  + +   D  N    ++E     GGW       
Sbjct: 1485 GAWGSGAKNKETEPAPAAWGSWGKKSSEAVSGGADWGNRGKRVSETESGAGGWASRNPSL 1544

Query: 1252 -----------NTKKQPSQDDPNDSWGGQV------EKANTPDGWNTKTQPSQAEPRDSW 1124
                         K +   +    +WG Q       E  +    W  K +P       +W
Sbjct: 1545 ETQSGGATWGSRDKSKFETESGGAAWGSQAKNNFESESGSGAAAWG-KKKPETESGGAAW 1603

Query: 1123 GGL------VEKTNTTGGWNT--KMQSSQDEPRGSWGEQVEK---------ANTTAGWNT 995
            G        +E  +    W T  K +S  +   G+WG Q +K         A+T   W+ 
Sbjct: 1604 GSQAKNKSEIESGSGAAAWGTWDKKKSETESGGGAWGSQAKKNSETESGACASTWGAWDK 1663

Query: 994  KTQPSQVEPDD-SWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLGEKTNTTGG--WNAQ 824
            K   ++   D  +WG   +           + +        WG    +T + GG  W +Q
Sbjct: 1664 KKPETESGGDGAAWGSQAK---------NNSETESGSGAAAWGKKKPETESGGGAAWGSQ 1714

Query: 823  KRPQDDP---SDSWG----GHVEKANTTGQNGKEGNGQ-------WNQWSEPPKNETD 692
             +   +    + +WG     + E  + +   GK+ N +       W  W +P    +D
Sbjct: 1715 AKKNSESQLGAANWGSKDTNNSENGSDSAAWGKKKNSEAEPTSVAWGSWGQPSPPASD 1772



 Score = 60.5 bits (145), Expect = 4e-06
 Identities = 56/216 (25%), Positives = 78/216 (36%), Gaps = 23/216 (10%)
 Frame = -3

Query: 1291 GGLAEKGISTGG-WNTKKQPSQDDPNDS-WG--GQVEKANTPDGWNTKTQPSQAEPRDSW 1124
            G L E G S+G  W   K    ++   S WG    +EK +   GWN+K    +A   DSW
Sbjct: 1316 GSLWENGCSSGSEWGVSKNAGGEENTQSGWGKAANIEKEDASSGWNSKKDAQEATNTDSW 1375

Query: 1123 GGLVEKT-----NTTGGWNTKMQSSQD------EPRGS-WGEQVEKANTTAGWNTKTQPS 980
            G    KT     N T  W TK   +        EP    WG    KA +   W  K   +
Sbjct: 1376 GAWGSKTKDDAENATPNWGTKPAQNDSVVIENGEPSSDVWG---PKAVSDKPWGKKNSET 1432

Query: 979  QVEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLGEKTNTT----GGWNA--QKR 818
            +  P  +WG               T S    A   WG   +K   T     GW +  +K 
Sbjct: 1433 EPAP-AAWG--------------KTNSESESAAAAWGSTNKKNTGTESDAAGWGSTNKKN 1477

Query: 817  PQ-DDPSDSWGGHVEKANTTGQNGKEGNGQWNQWSE 713
            P+ +  + +WG   +   T     +     W  W +
Sbjct: 1478 PETESDAGAWGSGAKNKET-----EPAPAAWGSWGK 1508



 Score = 59.3 bits (142), Expect = 8e-06
 Identities = 65/287 (22%), Positives = 99/287 (34%), Gaps = 54/287 (18%)
 Frame = -3

Query: 1402 GGWNTNKQPSLKNPNSSAPGGWNTKSQPSQNDPNNSWGGLA------EKGISTGGWNTKK 1241
            GGW  ++ PSL+  +  A  G   KS+        +WG  A      E G     W  KK
Sbjct: 1535 GGW-ASRNPSLETQSGGATWGSRDKSKFETESGGAAWGSQAKNNFESESGSGAAAWG-KK 1592

Query: 1240 QPSQDDPNDSWGGQ------VEKANTPDGWNT--KTQPSQAEPRDSWGGLVEKTNTT--- 1094
            +P  +    +WG Q      +E  +    W T  K +        +WG   +K + T   
Sbjct: 1593 KPETESGGAAWGSQAKNKSEIESGSGAAAWGTWDKKKSETESGGGAWGSQAKKNSETESG 1652

Query: 1093 ------GGWNTKMQSSQDEPRG-SWGEQ------VEKANTTAGWNTKTQPSQVEPDDSWG 953
                  G W+ K   ++    G +WG Q       E  +  A W  K   ++     +WG
Sbjct: 1653 ACASTWGAWDKKKPETESGGDGAAWGSQAKNNSETESGSGAAAWGKKKPETESGGGAAWG 1712

Query: 952  GLVEXXXXXXXXXXXTRSSQAEARDCWGGL----GEKTNTTGGWNAQKRPQDDPSD---- 797
               +              SQ  A + WG       E  + +  W  +K  + +P+     
Sbjct: 1713 SQAK----------KNSESQLGAAN-WGSKDTNNSENGSDSAAWGKKKNSEAEPTSVAWG 1761

Query: 796  SWGGHVEKAN----------------TTGQNGKEGNGQWNQWSEPPK 704
            SWG     A+                 T    KEGN + +QW  P K
Sbjct: 1762 SWGQPSPPASDKDAQEDDGNPWVSLKATNSGEKEGN-ETSQWGVPNK 1807


>ref|XP_009802889.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit
            1 [Nicotiana sylvestris]
          Length = 2055

 Score =  129 bits (324), Expect = 6e-27
 Identities = 68/153 (44%), Positives = 92/153 (60%)
 Frame = -2

Query: 632  NQWILKFGVLCVGSTEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNL 453
            N W L+F   C+   +K+  W QR+      F      +S GWGSS+ G+WK     N  
Sbjct: 1848 NSWWLEFSEGCIEENDKQPQWGQRRRNTRGDF----RDNSRGWGSSSGGEWKG----NRP 1899

Query: 452  QGTPDDQSRLNASGIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLS 273
              + DD +R    G +TATRQR+D FT EEQ  LS VD I+L IR+IM Q+   DG PLS
Sbjct: 1900 ARSADDSNR---GGNFTATRQRMDIFTEEEQDILSNVDPIMLNIRRIMHQTGYNDGDPLS 1956

Query: 272  AEDQANVLENVFKYHPDKDVKMGCGIDHVMVCR 174
            A+DQ+ +++ V  YHPDK VKMG G+D++ V +
Sbjct: 1957 ADDQSYIIDTVLNYHPDKAVKMGAGLDYITVSK 1989



 Score = 77.8 bits (190), Expect = 2e-11
 Identities = 59/207 (28%), Positives = 88/207 (42%), Gaps = 1/207 (0%)
 Frame = -3

Query: 1315 QNDPNNSWGGLAEKGISTGGWNTKKQPSQDDPNDSWGGQVEKANTPDGWNTKTQPSQAEP 1136
            +ND  +SWG   EK    G W  K + +++  + SW  + EK+ +   W  K +      
Sbjct: 1555 ENDGVSSWGKKVEK--DGGSWGKKVEQAENHSHQSW--KEEKSESLSSWGKKVEKDGVS- 1609

Query: 1135 RDSWGGLVEKTNTTGGWNTKMQSSQDEPRGSWGEQVEKANTTAGWNTKTQPSQVEPDDSW 956
              SWG  VE    +  W  K++       GSWG++VE+A   +  + K + S  E   SW
Sbjct: 1610 --SWGKKVENDGVSS-WGKKVEKDG----GSWGKKVEQAENHSHQSWKEEKS--ESLSSW 1660

Query: 955  GGLVEXXXXXXXXXXXTRSSQAEARDCWGGLGEKTNTTGGWNAQKRPQDDPSDSWGGHVE 776
            G  VE                 +    WG  GE    +  W   K+ + D   SWG  VE
Sbjct: 1661 GKKVEK----------------DGVSSWGKKGENDGVSS-WG--KKVEKDGGSSWGEKVE 1701

Query: 775  KANTTGQNGK-EGNGQWNQWSEPPKNE 698
              NT   +GK E +G W+ W +  K +
Sbjct: 1702 SENTPRPSGKGEQSGSWSSWGKQVKED 1728



 Score = 73.6 bits (179), Expect = 4e-10
 Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 11/222 (4%)
 Frame = -3

Query: 1345 GGWNTKSQPSQNDPNNSWGGLAEKGISTGGWNTKKQPS---------QDDPNDSWGGQVE 1193
            G W  K + ++N  + SW    EK  S   W  K +           ++D   SWG +VE
Sbjct: 1571 GSWGKKVEQAENHSHQSW--KEEKSESLSSWGKKVEKDGVSSWGKKVENDGVSSWGKKVE 1628

Query: 1192 KANTPDGWNTKTQPSQAEPRDSWGGLVEKTNTTGGWNTKMQSSQDEPRGSWGEQVEKANT 1013
            K      W  K + ++     SW    EK+ +   W  K++    +   SWG++ E  + 
Sbjct: 1629 KDG--GSWGKKVEQAENHSHQSW--KEEKSESLSSWGKKVEK---DGVSSWGKKGEN-DG 1680

Query: 1012 TAGWNTKTQPSQVEPDDSWGGLVEXXXXXXXXXXXTRSSQAEARDCWGGLGEKTNTTGGW 833
             + W  K +    +   SWG  VE             S + E    W   G++    GG 
Sbjct: 1681 VSSWGKKVEK---DGGSSWGEKVESENTPRP------SGKGEQSGSWSSWGKQVKEDGGA 1731

Query: 832  NAQKRPQDDPSDSWGGHV-EKANTTGQNGK-EGNGQWNQWSE 713
            ++ K+ + D   SWG  V E  +   Q+G  E +G W+ W +
Sbjct: 1732 SSGKKVEKDGGSSWGKKVDEPEDKPHQSGNGEQSGSWSSWGK 1773



 Score = 66.6 bits (161), Expect = 5e-08
 Identities = 65/252 (25%), Positives = 98/252 (38%), Gaps = 31/252 (12%)
 Frame = -3

Query: 1357 SSAPGGWNTKSQPSQNDPNNSWGGLAEKGISTGGWNTKKQPSQDDPNDS----------- 1211
            S +   W  K   ++N+P  S  G  E+  S   W  K +    +P  S           
Sbjct: 1357 SDSWSSWGRKVDDAENNPRQSGNG--EQLESWSAWGGKAKEVDSNPQQSGNTAQSGSWSA 1414

Query: 1210 WGGQVEKANTPDGWNTKTQPSQAEPRDSWGGLVEKTNTTGGWNTKM--------QSSQDE 1055
            WG +V++A      N +    Q+    SWG  VEK   TG W  K+        QS +DE
Sbjct: 1415 WGKKVDEAGNSQSGNEE----QSGSLSSWGKKVEKD--TGSWGKKVEEMESHNPQSGKDE 1468

Query: 1054 PRGS---WGEQVEKANTTAGWNTKTQPS---------QVEPDDSWGGLVEXXXXXXXXXX 911
              GS   WG++VEK   ++ W  K +           +++   SWG  VE          
Sbjct: 1469 KSGSLSSWGKKVEKDGDSS-WGKKVEIDGGSSWGKKVEIDGGSSWGKKVEEAENYSHQSG 1527

Query: 910  XTRSSQAEARDCWGGLGEKTNTTGGWNAQKRPQDDPSDSWGGHVEKANTTGQNGKEGNGQ 731
              +  ++E+   WG   EK   +  W   K+ ++D   SWG  VEK            G 
Sbjct: 1528 --KEEKSESLSSWGKKVEKDGVSS-WG--KKVENDGVSSWGKKVEK----------DGGS 1572

Query: 730  WNQWSEPPKNET 695
            W +  E  +N +
Sbjct: 1573 WGKKVEQAENHS 1584


>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
          Length = 1976

 Score = 98.2 bits (243), Expect(2) = 9e-27
 Identities = 56/143 (39%), Positives = 80/143 (55%)
 Frame = -2

Query: 593  STEKEVHWSQRKEPPVKPFAWGTNKSSHGWGSSNTGDWKNKGGPNNLQGTPDDQSRLNAS 414
            S EK+     +   P K F      SS GW +    DWK  G  N+    P  +S  N +
Sbjct: 1669 SREKDDKERSQWGNPAKKFP-----SSGGWSNGGGADWK--GNRNHTPRPP--RSEDNLA 1719

Query: 413  GIYTATRQRLDRFTAEEQSALSEVDTIILAIRKIMRQSRDKDGKPLSAEDQANVLENVFK 234
             ++TATRQRLD FT+EEQ  LS+V+ ++  +RKIM  S   DG P+S +D+  VLE +  
Sbjct: 1720 PMFTATRQRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILN 1779

Query: 233  YHPDKDVKMGCGIDHVMVCRAAI 165
            +HP K+ K+G G+D + V +  I
Sbjct: 1780 FHPQKETKLGSGVDFITVDKHTI 1802



 Score = 51.6 bits (122), Expect(2) = 9e-27
 Identities = 63/306 (20%), Positives = 107/306 (34%), Gaps = 71/306 (23%)
 Frame = -3

Query: 1396 WNTNKQPSLKNPNSSAPGGWNTKSQ---------------------PSQNDPNNS-WG-- 1289
            WNT K    ++  S + G W  K++                     P  N+P +  WG  
Sbjct: 1360 WNTRKDAQ-ESSKSDSGGAWGIKTKDADADTTPNWETSPAPKDSIVPENNEPTSDVWGHK 1418

Query: 1288 GLAEKGISTGGWNTKKQPSQDDPNDS--WGGQVEKANTPDGWNTKTQPSQAEPRDSWGGL 1115
             +++K      W T+  P+     D+  WG   +K       N++T+   A    +WG  
Sbjct: 1419 SVSDKSWDKKNWGTESAPAAWGSTDAAVWGSSDKK-------NSETESDAA----AWGSR 1467

Query: 1114 VEKTNTTGG-------WNTKMQSSQDEPRGS-WGEQVEKANTTAGWNTKTQPSQVEPDD- 962
             +  +  G        WN K  SS+ E  G+ WG   +  +  A WN+  + + +E D  
Sbjct: 1468 DKNNSDVGSGAGVLGPWNKK--SSETESNGATWGSSDKTKSGAAAWNSWDKKN-IETDSE 1524

Query: 961  --SWGGLVEXXXXXXXXXXXT-----RSSQAEARDCWGGLGEKTNTT--------GGWNA 827
              +WG   +                 + S+ E      G+G+K N+         G W+ 
Sbjct: 1525 PAAWGSQGKKNSETESGPAAWGAWDKKKSETEPGPAGWGMGDKKNSETELGPAAMGNWDK 1584

Query: 826  QKRPQDDPSDSWG-------GHVEKANTTGQNG--------------KEGNGQWNQWSEP 710
            +K        +WG       G  +K N+  ++               + G G W  W +P
Sbjct: 1585 KKSDTKSGPAAWGSTDAAAWGSSDKNNSETESDAAAWGSRNKKTSEIESGAGAWGSWGQP 1644

Query: 709  PKNETD 692
                 D
Sbjct: 1645 SPTAED 1650