BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver31_contig00005448
         (2290 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I sub...   842   0.0  
ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I sub...   781   0.0  
emb|CBI29879.3| unnamed protein product [Vitis vinifera]              781   0.0  
ref|XP_008798769.1| PREDICTED: DNA-directed RNA polymerase I sub...   763   0.0  
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni...   763   0.0  
ref|XP_011020318.1| PREDICTED: DNA-directed RNA polymerase I sub...   760   0.0  
gb|AIO05696.1| putative RNA polymerase AI large subunit, partial...   758   0.0  
ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I sub...   747   0.0  
ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I sub...   747   0.0  
gb|KCW48062.1| hypothetical protein EUGRSUZ_K01811 [Eucalyptus g...   747   0.0  
ref|XP_008392178.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   739   0.0  
ref|XP_009345036.1| PREDICTED: DNA-directed RNA polymerase I sub...   738   0.0  
ref|XP_009345035.1| PREDICTED: DNA-directed RNA polymerase I sub...   738   0.0  
ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobro...   728   0.0  
ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobro...   728   0.0  
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ...   728   0.0  
ref|XP_008240981.1| PREDICTED: DNA-directed RNA polymerase I sub...   725   0.0  
ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prun...   724   0.0  
ref|XP_009605274.1| PREDICTED: DNA-directed RNA polymerase I sub...   719   0.0  
ref|XP_009790932.1| PREDICTED: DNA-directed RNA polymerase I sub...   718   0.0  

>ref|XP_010251904.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nelumbo
            nucifera]
          Length = 1676

 Score =  842 bits (2175), Expect = 0.0
 Identities = 442/729 (60%), Positives = 532/729 (72%), Gaps = 9/729 (1%)
 Frame = -1

Query: 2290 VNFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYF 2111
            VN TQI SLLGQQELEGKRVPRMVSGKTLPCF PWDPASRAGGFISDRFLTGLRPQEYYF
Sbjct: 953  VNSTQICSLLGQQELEGKRVPRMVSGKTLPCFPPWDPASRAGGFISDRFLTGLRPQEYYF 1012

Query: 2110 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDV 1931
            HCMAGREGLVDTAVKTSRSGYLQRCL+KNLE LKV YD+TVRD+DGS+VQF YGEDG+DV
Sbjct: 1013 HCMAGREGLVDTAVKTSRSGYLQRCLVKNLEGLKVCYDYTVRDADGSVVQFIYGEDGIDV 1072

Query: 1930 HKTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKK 1751
            HKTSF+ EF  LAAN  +V ++     +  ++ K++ YIK +P  LEGK  ++I +LSKK
Sbjct: 1073 HKTSFLEEFEALAANHRIVQERFNNQLDSEVLFKYD-YIKKLPVALEGKAKDYIDTLSKK 1131

Query: 1750 QRASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGEM 1571
            +  SL              KY  SLAQPGEPVGV+AAQSVGEPSTQMTLNTFH AG+GEM
Sbjct: 1132 KLKSLNLRKRKDFMKLMRSKYISSLAQPGEPVGVVAAQSVGEPSTQMTLNTFHHAGRGEM 1191

Query: 1570 NVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEVN 1391
            NVTLG+PRLQEIL+R SEKIQTP+MTCPLRKGKT DDA RLAAKL+KVTVAD+IE +EV 
Sbjct: 1192 NVTLGIPRLQEILMRASEKIQTPVMTCPLRKGKTEDDAKRLAAKLQKVTVADVIESMEVG 1251

Query: 1390 VVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLIM 1211
            VVPFSV K QV+TV+KLK+K++ PE +PPY  ITL+DC  TL  +FV E+ED+I++HL+M
Sbjct: 1252 VVPFSVKKHQVSTVYKLKLKLYPPELYPPYSGITLKDCQATLKFVFVGEMEDAIQSHLLM 1311

Query: 1210 VSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGVD 1031
            +SK+ GITN+   +++ +            S                        DLG D
Sbjct: 1312 LSKIRGITNVVHSTQSNSGDGADEDGPTSKSQAAEE-----NDDAGDDDDYEAPDDLGAD 1366

Query: 1030 AQKRKEQATDEMDYGEDGMETETSLVEN--VDAEGSESEGDDVGNKENDQGT--DGEPQI 863
            AQKRK QATDEMDY ED ME E    EN   D E S     ++   E + G   DGE Q+
Sbjct: 1367 AQKRKRQATDEMDY-EDDMENEIVNTENGRSDIEASAGFESEIDQAEVEAGNIMDGEIQV 1425

Query: 862  LDAEEEPKSVLASKS--SDKREPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDFEVHLR 689
             DAE+E     +     S  +  G               K+SDR FF+ A+GLDFEVH R
Sbjct: 1426 FDAEDEASQTPSQHGTVSKSKSSGGKDEADARGMTRRTKKDSDRAFFMVAEGLDFEVHFR 1485

Query: 688  FTDEPHIILSKVVEKAAKNVYIKRSGNIERCSVI---DYNRDAKLAALQTAGVDFGAFWD 518
            FT+EPHI+L+++ +K AKNVY+KRSGNIE CSV+     + + ++  LQT+GVDF  FW+
Sbjct: 1486 FTNEPHILLAQIAQKTAKNVYVKRSGNIELCSVVVPKKADGEPEIPELQTSGVDFPTFWN 1545

Query: 517  MIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVFDAYGIKVNIRHLTLIADYMTH 338
            M DDLDI  + SND+H VL TYGVEAARATII +V  VF +YGI VNIRHL+LIAD+MT 
Sbjct: 1546 MQDDLDIRRLKSNDIHAVLNTYGVEAARATIIEQVNQVFKSYGIAVNIRHLSLIADFMTQ 1605

Query: 337  TGAIRPFSRHGIASSTSPFSKMSFETAAKFIVDAAYHGEVDDLESPSARICLGLPVKVGT 158
            TG  RP SR GIA + SPFSKMS+ETA++F+++AAYHGE+D+LESPSARICLGLPVK+GT
Sbjct: 1606 TGGYRPMSRFGIAETISPFSKMSYETASRFVIEAAYHGEMDNLESPSARICLGLPVKMGT 1665

Query: 157  GSFDLLQQV 131
            G FDL+Q++
Sbjct: 1666 GCFDLMQKI 1674


>ref|XP_010653802.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Vitis
            vinifera]
          Length = 1691

 Score =  781 bits (2016), Expect = 0.0
 Identities = 422/746 (56%), Positives = 521/746 (69%), Gaps = 26/746 (3%)
 Frame = -1

Query: 2290 VNFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYF 2111
            VNF+QISS LGQQ+LEGKRVPRMVSGKTLPCF PWD A+RAGGFISDRFLTGL PQEYYF
Sbjct: 967  VNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYF 1026

Query: 2110 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDV 1931
            HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKV YD+TVRDSDGSIVQF YG+DGVDV
Sbjct: 1027 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDV 1086

Query: 1930 HKTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKK 1751
            H+TSFI+EF  LA N+EVV +K G   +D    KFN YI+ +P+ L  K  +FI    ++
Sbjct: 1087 HQTSFITEFEALAVNEEVVCEKFG---QDG---KFNGYIQKLPKELRKKTKKFIEGFMEE 1140

Query: 1750 QRASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGEM 1571
            ++                 KY  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAG+GE+
Sbjct: 1141 RQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEV 1200

Query: 1570 NVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEVN 1391
            NVTLG+PRLQEIL+  +  I+TPIMTCPL+ G+++DDA+RLAAKLKKVTVADI E +EV+
Sbjct: 1201 NVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEVS 1260

Query: 1390 VVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLIM 1211
            +VPF+V   Q  +++KLK+K++ P  +PP+  I+LEDC +TL+ +FVRELED+I+NHL++
Sbjct: 1261 IVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLL 1320

Query: 1210 VSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGVD 1031
            +SK+SGI N   +S ++            + +                       DLG+D
Sbjct: 1321 LSKISGIKNFLPDSRSM------ASKETDEDASGDGLAGGNGDEDDDGEDDGGAEDLGLD 1374

Query: 1030 AQKRKEQATDEMDYGE-----DGMETETSLVENVDAEGSESEGDDVGNKENDQGTDGEPQ 866
            AQKRK+QA+DEMDYG+     D  E    L E +D    E E   + N E       E  
Sbjct: 1375 AQKRKQQASDEMDYGDSEGEPDEGEPSAGLTEEIDLVEDEVE---ISNNE-------EVG 1424

Query: 865  ILDAEEEPKSVLASKSSDKREPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDFEVHLRF 686
            I D ++E   V  SKS   +   +              K+ DR   V+AKG  FEVH RF
Sbjct: 1425 ISDPKDEDSKV-PSKSKSSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAKGTYFEVHFRF 1483

Query: 685  TDEPHIILSKVVEKAAKNVYIKRSGNIERCSVIDYNRD--------------------AK 566
            T+EPHI+L+++ +KAA  VYI+ SG I+ C VID N+D                     K
Sbjct: 1484 TNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRENIPGEEKKK 1543

Query: 565  LAALQTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVFDAYGI 386
            L ALQTAGVDF AFW M D+LD+ ++ SN++H +L T+GVEAARATII EV  VF+AYG+
Sbjct: 1544 LPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGV 1603

Query: 385  KVNIRHLTLIADYMTHTGAIRPFSRH-GIASSTSPFSKMSFETAAKFIVDAAYHGEVDDL 209
            KVNIRHL+LIAD+MTH+G  RP +RH GIA S SPFSKM+FETA+KFIV+AA HG  D+L
Sbjct: 1604 KVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTDNL 1663

Query: 208  ESPSARICLGLPVKVGTGSFDLLQQV 131
            ES SARICLGLPVK+GTG FDL+Q++
Sbjct: 1664 ESASARICLGLPVKMGTGCFDLMQKI 1689


>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
          Length = 1669

 Score =  781 bits (2016), Expect = 0.0
 Identities = 422/746 (56%), Positives = 521/746 (69%), Gaps = 26/746 (3%)
 Frame = -1

Query: 2290 VNFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYF 2111
            VNF+QISS LGQQ+LEGKRVPRMVSGKTLPCF PWD A+RAGGFISDRFLTGL PQEYYF
Sbjct: 945  VNFSQISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYF 1004

Query: 2110 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDV 1931
            HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKV YD+TVRDSDGSIVQF YG+DGVDV
Sbjct: 1005 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDV 1064

Query: 1930 HKTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKK 1751
            H+TSFI+EF  LA N+EVV +K G   +D    KFN YI+ +P+ L  K  +FI    ++
Sbjct: 1065 HQTSFITEFEALAVNEEVVCEKFG---QDG---KFNGYIQKLPKELRKKTKKFIEGFMEE 1118

Query: 1750 QRASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGEM 1571
            ++                 KY  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAG+GE+
Sbjct: 1119 RQDFDNMKKQKDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEV 1178

Query: 1570 NVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEVN 1391
            NVTLG+PRLQEIL+  +  I+TPIMTCPL+ G+++DDA+RLAAKLKKVTVADI E +EV+
Sbjct: 1179 NVTLGIPRLQEILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEVS 1238

Query: 1390 VVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLIM 1211
            +VPF+V   Q  +++KLK+K++ P  +PP+  I+LEDC +TL+ +FVRELED+I+NHL++
Sbjct: 1239 IVPFTVQDHQTCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLL 1298

Query: 1210 VSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGVD 1031
            +SK+SGI N   +S ++            + +                       DLG+D
Sbjct: 1299 LSKISGIKNFLPDSRSM------ASKETDEDASGDGLAGGNGDEDDDGEDDGGAEDLGLD 1352

Query: 1030 AQKRKEQATDEMDYGE-----DGMETETSLVENVDAEGSESEGDDVGNKENDQGTDGEPQ 866
            AQKRK+QA+DEMDYG+     D  E    L E +D    E E   + N E       E  
Sbjct: 1353 AQKRKQQASDEMDYGDSEGEPDEGEPSAGLTEEIDLVEDEVE---ISNNE-------EVG 1402

Query: 865  ILDAEEEPKSVLASKSSDKREPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDFEVHLRF 686
            I D ++E   V  SKS   +   +              K+ DR   V+AKG  FEVH RF
Sbjct: 1403 ISDPKDEDSKV-PSKSKSSKNKKAKTEAKRKKRFRAIKKDFDRAILVKAKGTYFEVHFRF 1461

Query: 685  TDEPHIILSKVVEKAAKNVYIKRSGNIERCSVIDYNRD--------------------AK 566
            T+EPHI+L+++ +KAA  VYI+ SG I+ C VID N+D                     K
Sbjct: 1462 TNEPHILLAQIAQKAANKVYIRSSGKIDLCQVIDCNKDQVIYYGRDPKKRENIPGEEKKK 1521

Query: 565  LAALQTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVFDAYGI 386
            L ALQTAGVDF AFW M D+LD+ ++ SN++H +L T+GVEAARATII EV  VF+AYG+
Sbjct: 1522 LPALQTAGVDFTAFWKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGV 1581

Query: 385  KVNIRHLTLIADYMTHTGAIRPFSRH-GIASSTSPFSKMSFETAAKFIVDAAYHGEVDDL 209
            KVNIRHL+LIAD+MTH+G  RP +RH GIA S SPFSKM+FETA+KFIV+AA HG  D+L
Sbjct: 1582 KVNIRHLSLIADFMTHSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTDNL 1641

Query: 208  ESPSARICLGLPVKVGTGSFDLLQQV 131
            ES SARICLGLPVK+GTG FDL+Q++
Sbjct: 1642 ESASARICLGLPVKMGTGCFDLMQKI 1667


>ref|XP_008798769.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Phoenix
            dactylifera]
          Length = 1665

 Score =  763 bits (1970), Expect = 0.0
 Identities = 417/741 (56%), Positives = 513/741 (69%), Gaps = 21/741 (2%)
 Frame = -1

Query: 2290 VNFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYF 2111
            VN TQISSLLGQQELEGKRVPRMVSGKTLPCF PWD + RAGGFISDRFLTGLRPQEYYF
Sbjct: 927  VNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDVSCRAGGFISDRFLTGLRPQEYYF 986

Query: 2110 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDV 1931
            HCMAGR+GLVDTAVKTSRSGYLQRCL+KNLECLKV YDHTVRD+DGS++QF YGEDGVDV
Sbjct: 987  HCMAGRDGLVDTAVKTSRSGYLQRCLVKNLECLKVSYDHTVRDADGSVIQFMYGEDGVDV 1046

Query: 1930 HKTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKK 1751
             KTSFISE   LAANQ VVLD+L    EDA + K N YIK++P  L      F + LSK 
Sbjct: 1047 LKTSFISELGALAANQTVVLDRLSSQLEDAHLSKSNGYIKELPYLLRENATTF-ARLSKN 1105

Query: 1750 QRASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGEM 1571
             + SL              KY  SLA+PGEPVGV+AAQSVGEPSTQMTLNTFHLAG+GEM
Sbjct: 1106 HQGSLHQIKRKDLMKLMKLKYLSSLAEPGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEM 1165

Query: 1570 NVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEVN 1391
            NVTLG+PRLQEIL+  S  I+TP+MTCPL  G+TR+DA+RLA+KL++V +ADI+E +EV 
Sbjct: 1166 NVTLGIPRLQEILMTASVDIRTPVMTCPLHDGRTREDAERLASKLRRVCLADIVESMEVC 1225

Query: 1390 VVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLIM 1211
             VPF ++  +V+T++KLK+ ++ PE +PP+  +TLEDCM TL   F+  +ED+I  HL M
Sbjct: 1226 SVPFCIHGNEVSTIYKLKMNLYPPELYPPHSSLTLEDCMITLRTDFIGAMEDAIAKHLDM 1285

Query: 1210 VSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGVD 1031
            + K+S I+++  + E+ N             S                       D G+D
Sbjct: 1286 ICKISDISSVTAKEES-NLAEGTDEDEHGSKSTHGEDKDNSSGFDGVDDDDGINEDEGMD 1344

Query: 1030 AQKRKEQATDEMDYGEDGMETETSL-VENVDAE---GSESEGDDVGNKEN-----DQGTD 878
            A+KRK++A+DEM+Y EDG+E E+S   +  D E   G ESE D V   E+     D   +
Sbjct: 1345 AEKRKKRASDEMEY-EDGIEKESSAKADEHDGETQSGFESEIDQVEADEDYTVGGDHSME 1403

Query: 877  GEPQILDAEEE-PKSVLASKSSDKREPGSXXXXXXXXXXXXXXKES----------DRVF 731
             E   L+ EEE P+S   ++ +   E G                            +R  
Sbjct: 1404 VEDPSLEVEEEIPESPSKAEPTPTLEDGKKQQKLADSKESKSESNKTTTKPRKKKINRTI 1463

Query: 730  FVEAKGLDFEVHLRFTDEPHIILSKVVEKAAKNVYIKRSGNIERCSVIDYNRDAKLAALQ 551
            FV+AKGL+FEVH  F  EP I+L++V +KAAK+VY+K S NIE CSV +  +D  L +LQ
Sbjct: 1464 FVDAKGLNFEVHYIFKKEPRILLAEVAQKAAKSVYVKESKNIELCSVTEPKKDEPL-SLQ 1522

Query: 550  TAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVFDAYGIKVNIR 371
            TAGV+F AFWD+ D LDIN I SND+H +L TYGVEAARATII EVKGVFDAYGI+VNIR
Sbjct: 1523 TAGVNFQAFWDLEDHLDINKITSNDIHAMLNTYGVEAARATIIKEVKGVFDAYGIRVNIR 1582

Query: 370  HLTLIADYMTHTGAIRPFSRHGIAS-STSPFSKMSFETAAKFIVDAAYHGEVDDLESPSA 194
            HL LIAD+MT  G  RP +R G+   +TSPF KM+FETA KFIV +A+HGEVD L++PSA
Sbjct: 1583 HLMLIADFMTFHGGYRPMNRIGMTDFNTSPFGKMTFETATKFIVGSAFHGEVDTLDAPSA 1642

Query: 193  RICLGLPVKVGTGSFDLLQQV 131
             +CLG PVK+GTG FDL+Q +
Sbjct: 1643 SVCLGQPVKMGTGCFDLMQNL 1663


>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
            communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
            polymerase I largest subunit, putative [Ricinus communis]
          Length = 1686

 Score =  763 bits (1969), Expect = 0.0
 Identities = 413/752 (54%), Positives = 518/752 (68%), Gaps = 32/752 (4%)
 Frame = -1

Query: 2290 VNFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYF 2111
            VNF QISS LGQQELEGKRVPRMVSGKTLPCFHPWD A+R+GG+I+DRFLTGLRPQEYYF
Sbjct: 945  VNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARSGGYITDRFLTGLRPQEYYF 1004

Query: 2110 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDV 1931
            HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK+GYDHTVRD+DGS+VQF YGEDGVDV
Sbjct: 1005 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKIGYDHTVRDADGSVVQFYYGEDGVDV 1064

Query: 1930 HKTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKK 1751
            H+TSFI++F  LA NQ+++  + GG      +  FN+YI ++PE L+ K + F+   S  
Sbjct: 1065 HQTSFIAKFKELALNQDMIYKRSGG-----QLGAFNSYISELPEALKEKADRFLDDFSIM 1119

Query: 1750 QRASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGEM 1571
             R +               K+  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAG+GEM
Sbjct: 1120 GRIASNLVKREDLYNLMKQKFLLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEM 1179

Query: 1570 NVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEVN 1391
            NVTLG+PRLQEIL+  S  I+TPIMTCPL++G+T +DAD LA KL+KVTVADI+E +EV+
Sbjct: 1180 NVTLGIPRLQEILMTASIDIKTPIMTCPLQEGRTNEDADHLADKLRKVTVADIVESMEVS 1239

Query: 1390 VVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLIM 1211
            VVPF++    V  ++KLK+K++ P H+P Y +I++ED  +TL+V+F+RELED+I+NH+ +
Sbjct: 1240 VVPFAIQDGGVCRIYKLKMKLYRPAHYPQYANISVEDWEETLEVVFLRELEDAIQNHMFL 1299

Query: 1210 VSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGVD 1031
            +S++SGI +   ES +              S ++                     DLG+D
Sbjct: 1300 LSRISGIKDFLPESRSRASGEADEDVAGDMSHREER------DDDNDDDDGERADDLGLD 1353

Query: 1030 AQKRKEQATDEMDYGEDGMETETSLVENVDAE---GSESE---GDDVGNKENDQGTDGE- 872
            AQKRK QATDEMDY +DG E E +  E+  +E   G ESE   GD+     ND   D E 
Sbjct: 1354 AQKRKLQATDEMDY-DDGFEEELNEGESTASEEESGFESEIDQGDNETEISNDVMLDNEA 1412

Query: 871  ----PQILDAEEEPKSVLASKSSDKREPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDF 704
                P    ++ + K   A   S   +                 K+ DR  FVEA+ + F
Sbjct: 1413 SETLPLRKPSKPKSKKKAAESPSHGEKSKDKKKKPKAKRKSRISKDFDRAIFVEARKMHF 1472

Query: 703  EVHLRFTDEPHIILSKVVEKAAKNVYIKRSGNIERCSVID--------YNRD-------- 572
            EVH +FT+EPHI+L+++ +K AK VYI+  G IE+C V D        Y +D        
Sbjct: 1473 EVHFKFTNEPHILLAEIAQKTAKKVYIQNPGKIEQCRVTDCKESQVIYYGKDPKERVDLK 1532

Query: 571  ----AKLAALQTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGV 404
                 K+ AL   GVDF  FW M D LD+ +I SN++H +L+TYGVEAAR TII E+  V
Sbjct: 1533 PDVKEKVPALHATGVDFNTFWKMQDHLDVRYIYSNNIHAMLKTYGVEAARETIIREINHV 1592

Query: 403  FDAYGIKVNIRHLTLIADYMTHTGAIRPFSR-HGIASSTSPFSKMSFETAAKFIVDAAYH 227
            F +YGI V+ RHL+LIAD+MTHTG  RP SR  GIA S SPFSKMSFETA+KFIV+AA H
Sbjct: 1593 FKSYGIAVSNRHLSLIADFMTHTGGYRPMSRMGGIAESISPFSKMSFETASKFIVEAALH 1652

Query: 226  GEVDDLESPSARICLGLPVKVGTGSFDLLQQV 131
            GE+D+LE+PSARICLGLPVK+GTGSFDL+Q++
Sbjct: 1653 GEIDNLETPSARICLGLPVKMGTGSFDLMQKL 1684


>ref|XP_011020318.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Populus
            euphratica]
          Length = 1699

 Score =  760 bits (1962), Expect = 0.0
 Identities = 418/771 (54%), Positives = 522/771 (67%), Gaps = 51/771 (6%)
 Frame = -1

Query: 2290 VNFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYF 2111
            VNF QISS LGQQELEGKRVPRMVSGKTLPCFHPWD A+RAGG+I DRFLTGLRPQEYYF
Sbjct: 940  VNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGYIIDRFLTGLRPQEYYF 999

Query: 2110 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDV 1931
            HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECL++GYDHTVRD+DGSIVQF YGEDGVDV
Sbjct: 1000 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLRIGYDHTVRDADGSIVQFYYGEDGVDV 1059

Query: 1930 HKTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKK 1751
            H+T FI++F  LAAN+E++ +K      D L   FN YI ++PE L+ K   F+ +++K+
Sbjct: 1060 HQTGFIAKFEALAANREIIYEK-----SDEL-GTFNAYISELPEALKEKAEIFLRNIAKE 1113

Query: 1750 QRASLQXXXXXXXXXXXXXKY-------FRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 1592
            Q +                 Y       F SLAQPGEPVGVLAAQSVGEPSTQMTLNTFH
Sbjct: 1114 QSSLHDYTKDRSSNLVEHDFYKLLKQKFFLSLAQPGEPVGVLAAQSVGEPSTQMTLNTFH 1173

Query: 1591 LAGQGEMNVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADI 1412
            LAG+GEMNVTLG+PRLQEIL+  S  I+TPIMTCPL++G+T++DA+RL+ KLKKVTVADI
Sbjct: 1174 LAGRGEMNVTLGIPRLQEILMTASADIKTPIMTCPLQEGRTKEDAERLSDKLKKVTVADI 1233

Query: 1411 IEKIEVNVVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDS 1232
            IE +EV+V+PF+V    +  ++KLK+K++ P H+P + DI++E+  +TL+VLFVRELED+
Sbjct: 1234 IESMEVSVMPFAVQNDGICRIYKLKMKLYTPAHYPQHADISVENWEETLEVLFVRELEDA 1293

Query: 1231 IENHLIMVSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXX 1052
            I+NHL+++SK+SGI N  +ES +              S   SH                 
Sbjct: 1294 IQNHLVLLSKISGIKNFLKESHS----GTPIEAEEDVSGNISH---EGENDDDSDDEGEE 1346

Query: 1051 XXDLGVDAQKRKEQATDEMDY--GEDGM--ETETSLVENVDAEGSESEGD---------D 911
              DLG+D QKRK+Q TDEMDY  G +G+  E E  L  +    GSES+ +         +
Sbjct: 1347 ADDLGLDVQKRKQQVTDEMDYDDGSEGLLNEDEGDLSGSQAPSGSESDTEPADKESEISN 1406

Query: 910  VGNKENDQGTDGEPQILDAEEEPKSVLASKSSDKR----------EPGSXXXXXXXXXXX 761
             G  +ND     +P  L    +PKS   +  S  +          E              
Sbjct: 1407 TGMVDNDSEYFEKPSHLGNYSKPKSRKKTSESSSQVEMHSKLKSTEKKKQKAKGKKVRSK 1466

Query: 760  XXXKESDRVFFVEAKGLDFEVHLRFTDEPHIILSKVVEKAAKNVYIKRSGNIERCSVID- 584
               K+ DR  FVEAKGL FE+HL+FT+EPHI+L+++ +K AK V I+  G ++RC V D 
Sbjct: 1467 LVKKDFDRSIFVEAKGLHFEIHLKFTNEPHILLAEIAQKTAKKVCIQNPGKVQRCQVTDC 1526

Query: 583  -------YNRD------------AKLAALQTAGVDFGAFWDMIDDLDINHIVSNDMHTVL 461
                   Y +D             K+ AL T GVDF  FW M D LD+ ++ SN +H +L
Sbjct: 1527 KENQVIYYGKDPKRRIDIEPGEKQKIPALHTIGVDFNTFWKMQDHLDVRYMYSNSIHGML 1586

Query: 460  RTYGVEAARATIINEVKGVFDAYGIKVNIRHLTLIADYMTHTGAIRPFSR-HGIASSTSP 284
            + YGVEAAR TII E+K VF++YGI VN RHL+LIADYMTHTG  RP SR  GI+ S SP
Sbjct: 1587 KAYGVEAARETIIREIKHVFNSYGISVNTRHLSLIADYMTHTGEYRPMSRIGGISESISP 1646

Query: 283  FSKMSFETAAKFIVDAAYHGEVDDLESPSARICLGLPVKVGTGSFDLLQQV 131
             SKMSFETA+KFIV+A  H EVD+LE+PSAR+CLGLPVK+GTGSFDL+Q++
Sbjct: 1647 LSKMSFETASKFIVEATLHREVDNLEAPSARVCLGLPVKMGTGSFDLMQKL 1697


>gb|AIO05696.1| putative RNA polymerase AI large subunit, partial [Cocos nucifera]
          Length = 1669

 Score =  758 bits (1956), Expect = 0.0
 Identities = 409/741 (55%), Positives = 513/741 (69%), Gaps = 21/741 (2%)
 Frame = -1

Query: 2290 VNFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYF 2111
            VN TQISSLLGQQELEGKRVPRMVSGKTLPCF PWD + RAGGFISDRFL+GLRPQEYYF
Sbjct: 933  VNMTQISSLLGQQELEGKRVPRMVSGKTLPCFPPWDISCRAGGFISDRFLSGLRPQEYYF 992

Query: 2110 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDV 1931
            HCMAGR+GLVDTAVKTSRSGYLQRCL+KNLECLKV YDHTVRD+DGS++QF YGEDGVDV
Sbjct: 993  HCMAGRDGLVDTAVKTSRSGYLQRCLVKNLECLKVSYDHTVRDADGSVIQFMYGEDGVDV 1052

Query: 1930 HKTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKK 1751
             KTSFISE   LAANQ VVLD+L    EDA + K N YIK++P  L      F + LSK 
Sbjct: 1053 LKTSFISELGALAANQTVVLDRLSSQLEDAHLSKSNGYIKELPYLLRENATTF-ARLSKN 1111

Query: 1750 QRASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGEM 1571
             + SL              KY  SLA+PGEPVGV+AAQSVGEPSTQMTLNTFHLAG+GEM
Sbjct: 1112 HQGSLHQIRRRDLMKLMKLKYMSSLAEPGEPVGVIAAQSVGEPSTQMTLNTFHLAGRGEM 1171

Query: 1570 NVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEVN 1391
            NVTLG+PRLQEIL+  S  I+TP+M CPL  G+TR+DA+RLA+KL++V +ADI+E +EV 
Sbjct: 1172 NVTLGIPRLQEILMTASADIRTPVMKCPLHDGRTREDAERLASKLRRVCLADIVESMEVC 1231

Query: 1390 VVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLIM 1211
             VPF ++  +V+T++KL++ ++ PE +P + D+TLEDCM TL   F+ ++ED+I  HL M
Sbjct: 1232 SVPFCIHGNEVSTIYKLRMNLYPPELYPQHSDLTLEDCMTTLRTNFIDDMEDAIAKHLDM 1291

Query: 1210 VSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGVD 1031
            + K+S I ++  + E+ N             S                       D G+D
Sbjct: 1292 ICKISDINSVTAKGES-NLAEGTDEGEHGSKSTHGEDKDNSRGFDDVDDDDGINEDEGMD 1350

Query: 1030 AQKRKEQATDEMDYGEDGMETETSL-VENVDAE---GSESEGDDVGNKENDQGTDGEPQI 863
            A+KRK++A+DEM+Y EDG+E E+S   +  D +   G ESE D V   + D    G+P +
Sbjct: 1351 AEKRKQRASDEMEY-EDGIEKESSAKADEHDGDTQSGFESEIDQV-EADEDYTVGGDPSM 1408

Query: 862  ------LDAEEEPKSVLASKSSDKREPGSXXXXXXXXXXXXXXKES----------DRVF 731
                  L+ EE P+S   ++ +   E G                +           +R  
Sbjct: 1409 EVEDPSLEVEETPESPSKAEPTPTLEDGKKKQKLADSKESKSESKKKKTKSRKKKINRTI 1468

Query: 730  FVEAKGLDFEVHLRFTDEPHIILSKVVEKAAKNVYIKRSGNIERCSVIDYNRDAKLAALQ 551
            FV+AKGL FEVH  F +EP I+L++V +K AK+VY++ S NIE CSV +  +D  L +LQ
Sbjct: 1469 FVDAKGLKFEVHYIFKEEPRILLAEVAQKTAKSVYVRDSKNIELCSVAEPKKDEPL-SLQ 1527

Query: 550  TAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVFDAYGIKVNIR 371
            TAGV+F AFWD+ D LD+N I SND+H +L TYGVE ARATII EVKGVFDAYGI+VNIR
Sbjct: 1528 TAGVNFQAFWDLEDHLDVNKITSNDIHAMLNTYGVEVARATIIKEVKGVFDAYGIRVNIR 1587

Query: 370  HLTLIADYMTHTGAIRPFSRHGIAS-STSPFSKMSFETAAKFIVDAAYHGEVDDLESPSA 194
            HLTLIAD+MT  G  RP +R G+ + +TSPF KM+FETA KFIV +A+HGEVD L++PSA
Sbjct: 1588 HLTLIADFMTFHGGYRPMNRIGMNNFNTSPFGKMTFETATKFIVGSAFHGEVDALDAPSA 1647

Query: 193  RICLGLPVKVGTGSFDLLQQV 131
             +CLG PVK+GTG FDL+Q +
Sbjct: 1648 SVCLGQPVKMGTGCFDLMQNL 1668


>ref|XP_010036456.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X2
            [Eucalyptus grandis]
          Length = 1669

 Score =  747 bits (1928), Expect = 0.0
 Identities = 412/742 (55%), Positives = 507/742 (68%), Gaps = 23/742 (3%)
 Frame = -1

Query: 2287 NFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYFH 2108
            NF QISS LGQQELEG+RVPRMVSGKTLPCF PWD ASRAGGFI DRFLTGLRPQEYYFH
Sbjct: 953  NFQQISSHLGQQELEGRRVPRMVSGKTLPCFPPWDWASRAGGFIIDRFLTGLRPQEYYFH 1012

Query: 2107 CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDVH 1928
            CMAGREGLVDTAVKTSRSGYLQRCL+KNLECLKV YDHTVRD+DGSIVQF YGEDG+DVH
Sbjct: 1013 CMAGREGLVDTAVKTSRSGYLQRCLVKNLECLKVSYDHTVRDADGSIVQFYYGEDGIDVH 1072

Query: 1927 KTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFIS--SLSK 1754
            KTSF+++F+ L AN +++  K         + K N+YI D+PE L+ K N+FI   +LS 
Sbjct: 1073 KTSFVAKFDALLANHDIMKAKYS-----TELRKSNSYITDLPEALKDKANKFICDRNLSV 1127

Query: 1753 KQRASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGE 1574
             + A  +             KYF SLAQPGEPVG++AAQSVGEPSTQMTLNTFH AG+GE
Sbjct: 1128 PRLARNEILKPEDFVKSVEQKYFSSLAQPGEPVGIVAAQSVGEPSTQMTLNTFHHAGRGE 1187

Query: 1573 MNVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEV 1394
            MNVTLG+PRLQEIL+  S  I+TPIMTCPL +G+++ DA+ LA KLKK+TVA++IE +EV
Sbjct: 1188 MNVTLGIPRLQEILMTASTDIKTPIMTCPLWRGRSKQDANSLAEKLKKITVAEMIESMEV 1247

Query: 1393 NVVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLI 1214
             VVPF+V   QV +++KLK+K+  P+ F      +++ C + L+V+++RELED+I+NHL+
Sbjct: 1248 AVVPFAVNNHQVCSIYKLKMKLKRPKVF------SVKHCEEILEVVYLRELEDAIQNHLL 1301

Query: 1213 MVSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGV 1034
            ++SK+SGI N    SE               +S+ +                    DLG 
Sbjct: 1302 LLSKISGIKNF-TSSET-------DEDASGSASQHAEERTVDDDADDGDDDGNDNDDLGF 1353

Query: 1033 DAQKRKEQATDEMDYGEDGMETETSLVENVDAEGSESEGDDVGNKENDQGTDGEPQILDA 854
            D QKRK QATDEM+Y EDG E E +  E   + G ES+GD   + +  +  DG P I   
Sbjct: 1354 DGQKRKRQATDEMEY-EDGYEEERNEPEL--SAGLESDGDQANDVDIGEDGDGPPGIA-- 1408

Query: 853  EEEPKSVLASKSSDKREPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDFEVHLRFTDEP 674
               P+ V  SK+   ++                 KE DR  FV A GLDFEVH RFT+EP
Sbjct: 1409 ---PEIVSPSKTKKSKKNAKSDDEGKKRVRTKVIKEFDRAIFVAANGLDFEVHFRFTNEP 1465

Query: 673  HIILSKVVEKAAKNVYIKRSGNIERCSVID--------YNRDAK------------LAAL 554
            H++L ++ +K AK VY++ SG IE C VI         Y  D K            + A+
Sbjct: 1466 HVLLGQIAQKVAKKVYLRSSGKIESCQVITCKENQVIYYGEDPKRRQKIEAKDKEAIPAI 1525

Query: 553  QTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVFDAYGIKVNI 374
             T G DF A W M D LDI +I SND+H +L TYGVEAAR TII EV+ VF +YGI V++
Sbjct: 1526 NTNGADFCALWQMQDQLDIRYIYSNDIHAMLTTYGVEAARETIIREVQNVFGSYGISVDM 1585

Query: 373  RHLTLIADYMTHTGAIRPFSR-HGIASSTSPFSKMSFETAAKFIVDAAYHGEVDDLESPS 197
            RHLTLIAD+MTH G  RP +R  GIA S SPFSKMSFETA+KFIVDAAYHG VD+LE+PS
Sbjct: 1586 RHLTLIADFMTHAGGYRPMNRLGGIAESISPFSKMSFETASKFIVDAAYHGVVDNLETPS 1645

Query: 196  ARICLGLPVKVGTGSFDLLQQV 131
            ARICLGLP+K+GTGSFDLLQ++
Sbjct: 1646 ARICLGLPMKMGTGSFDLLQKI 1667


>ref|XP_010036455.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X1
            [Eucalyptus grandis]
          Length = 1669

 Score =  747 bits (1928), Expect = 0.0
 Identities = 412/742 (55%), Positives = 507/742 (68%), Gaps = 23/742 (3%)
 Frame = -1

Query: 2287 NFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYFH 2108
            NF QISS LGQQELEG+RVPRMVSGKTLPCF PWD ASRAGGFI DRFLTGLRPQEYYFH
Sbjct: 953  NFQQISSHLGQQELEGRRVPRMVSGKTLPCFPPWDWASRAGGFIIDRFLTGLRPQEYYFH 1012

Query: 2107 CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDVH 1928
            CMAGREGLVDTAVKTSRSGYLQRCL+KNLECLKV YDHTVRD+DGSIVQF YGEDG+DVH
Sbjct: 1013 CMAGREGLVDTAVKTSRSGYLQRCLVKNLECLKVSYDHTVRDADGSIVQFYYGEDGIDVH 1072

Query: 1927 KTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFIS--SLSK 1754
            KTSF+++F+ L AN +++  K         + K N+YI D+PE L+ K N+FI   +LS 
Sbjct: 1073 KTSFVAKFDALLANHDIMKAKYS-----TELRKSNSYITDLPEALKDKANKFICDRNLSV 1127

Query: 1753 KQRASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGE 1574
             + A  +             KYF SLAQPGEPVG++AAQSVGEPSTQMTLNTFH AG+GE
Sbjct: 1128 PRLARNEILKPEDFVKSVEQKYFSSLAQPGEPVGIVAAQSVGEPSTQMTLNTFHHAGRGE 1187

Query: 1573 MNVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEV 1394
            MNVTLG+PRLQEIL+  S  I+TPIMTCPL +G+++ DA+ LA KLKK+TVA++IE +EV
Sbjct: 1188 MNVTLGIPRLQEILMTASTDIKTPIMTCPLWRGRSKQDANSLAEKLKKITVAEMIESMEV 1247

Query: 1393 NVVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLI 1214
             VVPF+V   QV +++KLK+K+  P+ F      +++ C + L+V+++RELED+I+NHL+
Sbjct: 1248 AVVPFAVNNHQVCSIYKLKMKLKRPKVF------SVKHCEEILEVVYLRELEDAIQNHLL 1301

Query: 1213 MVSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGV 1034
            ++SK+SGI N    SE               +S+ +                    DLG 
Sbjct: 1302 LLSKISGIKNF-TSSET-------DEDASGSASQHAEERTVDDDADDGDDDGNDNDDLGF 1353

Query: 1033 DAQKRKEQATDEMDYGEDGMETETSLVENVDAEGSESEGDDVGNKENDQGTDGEPQILDA 854
            D QKRK QATDEM+Y EDG E E +  E   + G ES+GD   + +  +  DG P I   
Sbjct: 1354 DGQKRKRQATDEMEY-EDGYEEERNEPEL--SAGLESDGDQANDVDIGEDGDGPPGIA-- 1408

Query: 853  EEEPKSVLASKSSDKREPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDFEVHLRFTDEP 674
               P+ V  SK+   ++                 KE DR  FV A GLDFEVH RFT+EP
Sbjct: 1409 ---PEIVSPSKTKKSKKNAKSDDEGKKRVRTKVIKEFDRAIFVAANGLDFEVHFRFTNEP 1465

Query: 673  HIILSKVVEKAAKNVYIKRSGNIERCSVID--------YNRDAK------------LAAL 554
            H++L ++ +K AK VY++ SG IE C VI         Y  D K            + A+
Sbjct: 1466 HVLLGQIAQKVAKKVYLRSSGKIESCQVITCKENQVIYYGEDPKRRQKIEAKDKEAIPAI 1525

Query: 553  QTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVFDAYGIKVNI 374
             T G DF A W M D LDI +I SND+H +L TYGVEAAR TII EV+ VF +YGI V++
Sbjct: 1526 NTNGADFCALWQMQDQLDIRYIYSNDIHAMLTTYGVEAARETIIREVQNVFGSYGISVDM 1585

Query: 373  RHLTLIADYMTHTGAIRPFSR-HGIASSTSPFSKMSFETAAKFIVDAAYHGEVDDLESPS 197
            RHLTLIAD+MTH G  RP +R  GIA S SPFSKMSFETA+KFIVDAAYHG VD+LE+PS
Sbjct: 1586 RHLTLIADFMTHAGGYRPMNRLGGIAESISPFSKMSFETASKFIVDAAYHGVVDNLETPS 1645

Query: 196  ARICLGLPVKVGTGSFDLLQQV 131
            ARICLGLP+K+GTGSFDLLQ++
Sbjct: 1646 ARICLGLPMKMGTGSFDLLQKI 1667


>gb|KCW48062.1| hypothetical protein EUGRSUZ_K01811 [Eucalyptus grandis]
          Length = 1606

 Score =  747 bits (1928), Expect = 0.0
 Identities = 412/742 (55%), Positives = 507/742 (68%), Gaps = 23/742 (3%)
 Frame = -1

Query: 2287 NFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYFH 2108
            NF QISS LGQQELEG+RVPRMVSGKTLPCF PWD ASRAGGFI DRFLTGLRPQEYYFH
Sbjct: 890  NFQQISSHLGQQELEGRRVPRMVSGKTLPCFPPWDWASRAGGFIIDRFLTGLRPQEYYFH 949

Query: 2107 CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDVH 1928
            CMAGREGLVDTAVKTSRSGYLQRCL+KNLECLKV YDHTVRD+DGSIVQF YGEDG+DVH
Sbjct: 950  CMAGREGLVDTAVKTSRSGYLQRCLVKNLECLKVSYDHTVRDADGSIVQFYYGEDGIDVH 1009

Query: 1927 KTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFIS--SLSK 1754
            KTSF+++F+ L AN +++  K         + K N+YI D+PE L+ K N+FI   +LS 
Sbjct: 1010 KTSFVAKFDALLANHDIMKAKYS-----TELRKSNSYITDLPEALKDKANKFICDRNLSV 1064

Query: 1753 KQRASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGE 1574
             + A  +             KYF SLAQPGEPVG++AAQSVGEPSTQMTLNTFH AG+GE
Sbjct: 1065 PRLARNEILKPEDFVKSVEQKYFSSLAQPGEPVGIVAAQSVGEPSTQMTLNTFHHAGRGE 1124

Query: 1573 MNVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEV 1394
            MNVTLG+PRLQEIL+  S  I+TPIMTCPL +G+++ DA+ LA KLKK+TVA++IE +EV
Sbjct: 1125 MNVTLGIPRLQEILMTASTDIKTPIMTCPLWRGRSKQDANSLAEKLKKITVAEMIESMEV 1184

Query: 1393 NVVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLI 1214
             VVPF+V   QV +++KLK+K+  P+ F      +++ C + L+V+++RELED+I+NHL+
Sbjct: 1185 AVVPFAVNNHQVCSIYKLKMKLKRPKVF------SVKHCEEILEVVYLRELEDAIQNHLL 1238

Query: 1213 MVSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGV 1034
            ++SK+SGI N    SE               +S+ +                    DLG 
Sbjct: 1239 LLSKISGIKNF-TSSET-------DEDASGSASQHAEERTVDDDADDGDDDGNDNDDLGF 1290

Query: 1033 DAQKRKEQATDEMDYGEDGMETETSLVENVDAEGSESEGDDVGNKENDQGTDGEPQILDA 854
            D QKRK QATDEM+Y EDG E E +  E   + G ES+GD   + +  +  DG P I   
Sbjct: 1291 DGQKRKRQATDEMEY-EDGYEEERNEPEL--SAGLESDGDQANDVDIGEDGDGPPGIA-- 1345

Query: 853  EEEPKSVLASKSSDKREPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDFEVHLRFTDEP 674
               P+ V  SK+   ++                 KE DR  FV A GLDFEVH RFT+EP
Sbjct: 1346 ---PEIVSPSKTKKSKKNAKSDDEGKKRVRTKVIKEFDRAIFVAANGLDFEVHFRFTNEP 1402

Query: 673  HIILSKVVEKAAKNVYIKRSGNIERCSVID--------YNRDAK------------LAAL 554
            H++L ++ +K AK VY++ SG IE C VI         Y  D K            + A+
Sbjct: 1403 HVLLGQIAQKVAKKVYLRSSGKIESCQVITCKENQVIYYGEDPKRRQKIEAKDKEAIPAI 1462

Query: 553  QTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVFDAYGIKVNI 374
             T G DF A W M D LDI +I SND+H +L TYGVEAAR TII EV+ VF +YGI V++
Sbjct: 1463 NTNGADFCALWQMQDQLDIRYIYSNDIHAMLTTYGVEAARETIIREVQNVFGSYGISVDM 1522

Query: 373  RHLTLIADYMTHTGAIRPFSR-HGIASSTSPFSKMSFETAAKFIVDAAYHGEVDDLESPS 197
            RHLTLIAD+MTH G  RP +R  GIA S SPFSKMSFETA+KFIVDAAYHG VD+LE+PS
Sbjct: 1523 RHLTLIADFMTHAGGYRPMNRLGGIAESISPFSKMSFETASKFIVDAAYHGVVDNLETPS 1582

Query: 196  ARICLGLPVKVGTGSFDLLQQV 131
            ARICLGLP+K+GTGSFDLLQ++
Sbjct: 1583 ARICLGLPMKMGTGSFDLLQKI 1604


>ref|XP_008392178.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
            rpa1-like [Malus domestica]
          Length = 1682

 Score =  739 bits (1908), Expect = 0.0
 Identities = 397/748 (53%), Positives = 508/748 (67%), Gaps = 29/748 (3%)
 Frame = -1

Query: 2287 NFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYFH 2108
            N  QI+S LGQQELEGKRVP+MVSGKTLPCFHPWD +SR+GGFI DRFLTGLRPQEYYFH
Sbjct: 946  NLQQITSYLGQQELEGKRVPQMVSGKTLPCFHPWDWSSRSGGFIIDRFLTGLRPQEYYFH 1005

Query: 2107 CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDVH 1928
            CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKV YDHTVRD+DGSIVQF YGEDGVDVH
Sbjct: 1006 CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIVQFYYGEDGVDVH 1065

Query: 1927 KTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKKQ 1748
             TSF+ +F+ LAAN+E+  +K         + K + YI ++P  L+ K  +F+  LS K+
Sbjct: 1066 LTSFLQKFDSLAANKEMFQNKF-----HRQIDKSDPYISELPSALKYKAEKFVHDLSLKE 1120

Query: 1747 RASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGEMN 1568
              S               KY  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAG+GEMN
Sbjct: 1121 E-SYNLFSQVDFLKLMEHKYLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMN 1179

Query: 1567 VTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEVNV 1388
            VTLG+PRLQEIL+  + +I+TP+MTCPLRK +++++A  LA KLKK+TVADIIE +EV +
Sbjct: 1180 VTLGIPRLQEILMTAANEIKTPVMTCPLRKRRSKEEAQHLANKLKKITVADIIESMEVTL 1239

Query: 1387 VPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLIMV 1208
            +PF +   +   ++KL++K+  PEH    +    ED  + L+V+FVR LED+I++H++++
Sbjct: 1240 LPFVLQGLETCRIYKLQMKLHIPEHLQNIIQDISEDWEEILEVMFVRALEDAIQSHVLLL 1299

Query: 1207 SKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGVDA 1028
            SK+SGI N+    +  +             SK  H                   D G+DA
Sbjct: 1300 SKISGIKNVTDAPQKASNEMDENI------SKSGHQHQEEDDDNDGADDGEGAEDFGMDA 1353

Query: 1027 QKRKEQATDEMDYGEDGMETETSLVENVDAEGSESEGDDVGNKENDQGTDGEPQILDAE- 851
            QKRK QA DEMDY EDG E E    +  D +  E++ D+    + + G DG  +++DA  
Sbjct: 1354 QKRKLQAFDEMDY-EDGCEDEVRDGDLTDGDEVENDADNDEENDVETGKDGAIEVVDATD 1412

Query: 850  -------EEPKSVLASKSSDKREPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDFEVHL 692
                   EE   +L +KS +K+                  K++DR  FV AKG  FEVH 
Sbjct: 1413 EMPANPLEEAGDLLKTKSKEKKNKSGATIKKKKIRAQLVRKDTDRSIFVSAKGFHFEVHF 1472

Query: 691  RFTDEPHIILSKVVEKAAKNVYIKRSGNIERC--------SVIDYNRD------------ 572
            +FTDEPHI+L+++ ++ A+ V ++RSG+++ C         V+ Y +D            
Sbjct: 1473 KFTDEPHILLAQIAQQTAQKVCMQRSGSVDDCKQITCDENQVLLYGKDPENKQSYSSKEK 1532

Query: 571  AKLAALQTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVFDAY 392
             ++AALQT GVDF  FW + D LD+ ++ SN++H +L TYGVEAAR TII E+  VF +Y
Sbjct: 1533 KEMAALQTTGVDFRTFWKLQDVLDVRYLYSNNIHAMLNTYGVEAARETIIREIMNVFKSY 1592

Query: 391  GIKVNIRHLTLIADYMTHTGAIRPFSRH-GIASSTSPFSKMSFETAAKFIVDAAYHGEVD 215
            GI VNIRHLTLIADYMTH+G  RP +R  GIA S SPF+KMSFETA+KFIV+AAYHG+ D
Sbjct: 1593 GISVNIRHLTLIADYMTHSGGYRPMNRFGGIAESISPFNKMSFETASKFIVEAAYHGQTD 1652

Query: 214  DLESPSARICLGLPVKVGTGSFDLLQQV 131
            DLE+PS+RICLGLPVKVGTG FDL+Q++
Sbjct: 1653 DLETPSSRICLGLPVKVGTGCFDLMQKI 1680


>ref|XP_009345036.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X2
            [Pyrus x bretschneideri]
          Length = 1373

 Score =  738 bits (1906), Expect = 0.0
 Identities = 398/748 (53%), Positives = 509/748 (68%), Gaps = 29/748 (3%)
 Frame = -1

Query: 2287 NFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYFH 2108
            N  QI+S LGQQELEGKRVP+MVSGKTLPCFHPWD +SR+GGFI DRFLTGLRPQEYYFH
Sbjct: 637  NLQQITSYLGQQELEGKRVPQMVSGKTLPCFHPWDWSSRSGGFIIDRFLTGLRPQEYYFH 696

Query: 2107 CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDVH 1928
            CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKV YDHTVRD+DGSIVQF YGEDGVDVH
Sbjct: 697  CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIVQFYYGEDGVDVH 756

Query: 1927 KTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKKQ 1748
             TSF+ +F+ LAAN+E+  +K         + K + YI ++P  L+ K  +F+  LS K+
Sbjct: 757  LTSFLQKFDSLAANKEMFQNKF-----HRQIDKSDPYIAELPSALKYKAEKFVLDLSLKE 811

Query: 1747 RASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGEMN 1568
              S               KY  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAG+GEMN
Sbjct: 812  E-SHNLFSQVDFLKLMEHKYLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMN 870

Query: 1567 VTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEVNV 1388
            VTLG+PRLQEIL+  + +I+TP+MTCPLRKG+++++A  LA KLKK+TVADIIE +EV +
Sbjct: 871  VTLGIPRLQEILMTAANEIKTPVMTCPLRKGRSKEEAQHLANKLKKITVADIIESMEVTL 930

Query: 1387 VPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLIMV 1208
            +PF +   +   ++KL++K+  PEH    +    ED  + L+V+FVR LED+I++H++++
Sbjct: 931  LPFVLQGLETCRIYKLQMKLHIPEHLQNIVQDISEDWEEILEVMFVRALEDAIQSHVLLL 990

Query: 1207 SKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGVDA 1028
            SK+SGI N+    +  +             SK  H                   D G+DA
Sbjct: 991  SKISGIKNVTDAPQKASNETDENI------SKSGHQHQEEDDDNDGADDGEGAEDFGMDA 1044

Query: 1027 QKRKEQATDEMDYGEDGMETETSLVENVDAEGSESEGDDVGNKENDQGTDGEPQILDAEE 848
            QKRK QA DEMDY EDG E E    +  D +  E++ D+    + + G DG  +++DA +
Sbjct: 1045 QKRKLQAFDEMDY-EDGCEDEVRDGDLTDGDEVENDADNDEENDVETGKDGAIEVVDATD 1103

Query: 847  E-PKSVLAS-------KSSDKREPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDFEVHL 692
            E P S L         KS +K+                  K++DR  FV AKG  FE+H 
Sbjct: 1104 EMPTSPLEEAGNLPKPKSKEKKNKSGATIKKKKIRAQLVRKDTDRSIFVSAKGFHFEIHF 1163

Query: 691  RFTDEPHIILSKVVEKAAKNVYIKRSGNIERC--------SVIDYNRD------------ 572
            +FTDEPHI+L+++ ++ A+ V ++RSG+++ C         V+ Y +D            
Sbjct: 1164 KFTDEPHILLAQIAQQTAQKVSMQRSGSVDDCKQITCDENQVLLYGKDPENKQSYSSKEK 1223

Query: 571  AKLAALQTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVFDAY 392
             ++AALQT GVDF  FW + D LD+ ++ SN++H +L TYGVEAAR TII E+  VF +Y
Sbjct: 1224 KEMAALQTTGVDFRTFWKLQDVLDVRYLYSNNIHAMLNTYGVEAARETIIREIMNVFKSY 1283

Query: 391  GIKVNIRHLTLIADYMTHTGAIRPFSRH-GIASSTSPFSKMSFETAAKFIVDAAYHGEVD 215
            GI VNIRHLTLIADYMTH+G  RP +R  GIA S SPF+KMSFETA+KFIV+AAYHG+ D
Sbjct: 1284 GISVNIRHLTLIADYMTHSGGYRPMNRFGGIAESISPFNKMSFETASKFIVEAAYHGQTD 1343

Query: 214  DLESPSARICLGLPVKVGTGSFDLLQQV 131
            DLE+PS+RICLGLPVKVGTG FDL+Q++
Sbjct: 1344 DLETPSSRICLGLPVKVGTGCFDLMQKI 1371


>ref|XP_009345035.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 isoform X1
            [Pyrus x bretschneideri]
          Length = 1684

 Score =  738 bits (1906), Expect = 0.0
 Identities = 398/748 (53%), Positives = 509/748 (68%), Gaps = 29/748 (3%)
 Frame = -1

Query: 2287 NFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYFH 2108
            N  QI+S LGQQELEGKRVP+MVSGKTLPCFHPWD +SR+GGFI DRFLTGLRPQEYYFH
Sbjct: 948  NLQQITSYLGQQELEGKRVPQMVSGKTLPCFHPWDWSSRSGGFIIDRFLTGLRPQEYYFH 1007

Query: 2107 CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDVH 1928
            CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKV YDHTVRD+DGSIVQF YGEDGVDVH
Sbjct: 1008 CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDHTVRDADGSIVQFYYGEDGVDVH 1067

Query: 1927 KTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKKQ 1748
             TSF+ +F+ LAAN+E+  +K         + K + YI ++P  L+ K  +F+  LS K+
Sbjct: 1068 LTSFLQKFDSLAANKEMFQNKF-----HRQIDKSDPYIAELPSALKYKAEKFVLDLSLKE 1122

Query: 1747 RASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGEMN 1568
              S               KY  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAG+GEMN
Sbjct: 1123 E-SHNLFSQVDFLKLMEHKYLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMN 1181

Query: 1567 VTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEVNV 1388
            VTLG+PRLQEIL+  + +I+TP+MTCPLRKG+++++A  LA KLKK+TVADIIE +EV +
Sbjct: 1182 VTLGIPRLQEILMTAANEIKTPVMTCPLRKGRSKEEAQHLANKLKKITVADIIESMEVTL 1241

Query: 1387 VPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLIMV 1208
            +PF +   +   ++KL++K+  PEH    +    ED  + L+V+FVR LED+I++H++++
Sbjct: 1242 LPFVLQGLETCRIYKLQMKLHIPEHLQNIVQDISEDWEEILEVMFVRALEDAIQSHVLLL 1301

Query: 1207 SKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGVDA 1028
            SK+SGI N+    +  +             SK  H                   D G+DA
Sbjct: 1302 SKISGIKNVTDAPQKASNETDENI------SKSGHQHQEEDDDNDGADDGEGAEDFGMDA 1355

Query: 1027 QKRKEQATDEMDYGEDGMETETSLVENVDAEGSESEGDDVGNKENDQGTDGEPQILDAEE 848
            QKRK QA DEMDY EDG E E    +  D +  E++ D+    + + G DG  +++DA +
Sbjct: 1356 QKRKLQAFDEMDY-EDGCEDEVRDGDLTDGDEVENDADNDEENDVETGKDGAIEVVDATD 1414

Query: 847  E-PKSVLAS-------KSSDKREPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDFEVHL 692
            E P S L         KS +K+                  K++DR  FV AKG  FE+H 
Sbjct: 1415 EMPTSPLEEAGNLPKPKSKEKKNKSGATIKKKKIRAQLVRKDTDRSIFVSAKGFHFEIHF 1474

Query: 691  RFTDEPHIILSKVVEKAAKNVYIKRSGNIERC--------SVIDYNRD------------ 572
            +FTDEPHI+L+++ ++ A+ V ++RSG+++ C         V+ Y +D            
Sbjct: 1475 KFTDEPHILLAQIAQQTAQKVSMQRSGSVDDCKQITCDENQVLLYGKDPENKQSYSSKEK 1534

Query: 571  AKLAALQTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVFDAY 392
             ++AALQT GVDF  FW + D LD+ ++ SN++H +L TYGVEAAR TII E+  VF +Y
Sbjct: 1535 KEMAALQTTGVDFRTFWKLQDVLDVRYLYSNNIHAMLNTYGVEAARETIIREIMNVFKSY 1594

Query: 391  GIKVNIRHLTLIADYMTHTGAIRPFSRH-GIASSTSPFSKMSFETAAKFIVDAAYHGEVD 215
            GI VNIRHLTLIADYMTH+G  RP +R  GIA S SPF+KMSFETA+KFIV+AAYHG+ D
Sbjct: 1595 GISVNIRHLTLIADYMTHSGGYRPMNRFGGIAESISPFNKMSFETASKFIVEAAYHGQTD 1654

Query: 214  DLESPSARICLGLPVKVGTGSFDLLQQV 131
            DLE+PS+RICLGLPVKVGTG FDL+Q++
Sbjct: 1655 DLETPSSRICLGLPVKVGTGCFDLMQKI 1682


>ref|XP_007028856.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
            gi|508717461|gb|EOY09358.1| Nuclear RNA polymerase A1
            isoform 4 [Theobroma cacao]
          Length = 1397

 Score =  728 bits (1878), Expect = 0.0
 Identities = 403/742 (54%), Positives = 507/742 (68%), Gaps = 22/742 (2%)
 Frame = -1

Query: 2290 VNFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYF 2111
            VNF QISS LGQQELEGKRVPRMVSGKTLPCFHPWD A+RAGGFISDRFL+GLRPQEYYF
Sbjct: 666  VNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYF 725

Query: 2110 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDV 1931
            HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRD+DGSIVQF YGEDG+DV
Sbjct: 726  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDV 785

Query: 1930 HKTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKK 1751
            H+TSFI++F  LA NQ+++ +KL   C    + + ++  K +P+ L  K  +FI    KK
Sbjct: 786  HQTSFIAKFEALALNQDMMSEKL---CSQ--LGEPDDSDKILPDGLRSKAEQFIREEIKK 840

Query: 1750 QRASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGEM 1571
             +   Q             K+  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAG+GEM
Sbjct: 841  YQH--QKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEM 898

Query: 1570 NVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEVN 1391
            NVTLG+PRLQEIL+  S  I+TP+MTCPL KGKT++DA  LA K+KK+TVADI+E +EV+
Sbjct: 899  NVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVS 958

Query: 1390 VVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLIM 1211
            V PF+V    + +++KLK+ +  P+ +    DIT++DC   L V+F+RELED+I+NHL++
Sbjct: 959  VAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVL 1018

Query: 1210 VSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGVD 1031
            +SK+SGI     +S+  N             S+++                    DLG+D
Sbjct: 1019 LSKISGIKKFMPDSQR-NASNEMDEDVSEGRSRET--KNDDDDDDDDADDEERAEDLGLD 1075

Query: 1030 AQKRKEQATDEMDYGEDG--METETSLVENVDAEGSESEGDDVGNKENDQGTD-GEPQIL 860
            AQK+K+Q TDEMDY +D    + E + +  +++E   SE +    + N  G+D G+ +I 
Sbjct: 1076 AQKQKQQTTDEMDYEDDSEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEI- 1134

Query: 859  DAEEEPKSVLASKSSDKREPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDFEVHLRFTD 680
             ++  P     S    + E                 KESDR  F   +GL FEVH +  +
Sbjct: 1135 -SQSSPNLENRSNPKSREEKTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKN 1193

Query: 679  EPHIILSKVVEKAAKNVYIKRSGNIERCSVID--------YNRD----------AKLAAL 554
            EPHI+L+++ EK AK VYI+  G I++C V D        Y  D           K+ AL
Sbjct: 1194 EPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQAL 1253

Query: 553  QTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVFDAYGIKVNI 374
             T GVDFGAFW M D +D+ ++ SN +H +L TYGVEAAR TII E+  VF +YGI VNI
Sbjct: 1254 HTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNI 1313

Query: 373  RHLTLIADYMTHTGAIRPFSR-HGIASSTSPFSKMSFETAAKFIVDAAYHGEVDDLESPS 197
            RHLTLIAD+MTH+G  RP SR  GIA S SPFSKMSFETA+KFIV+AA HG VD+LE+PS
Sbjct: 1314 RHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPS 1373

Query: 196  ARICLGLPVKVGTGSFDLLQQV 131
            +RICLGLPVK+GTGSFDL+Q+V
Sbjct: 1374 SRICLGLPVKMGTGSFDLMQKV 1395


>ref|XP_007028855.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
            gi|508717460|gb|EOY09357.1| Nuclear RNA polymerase A1
            isoform 3 [Theobroma cacao]
          Length = 1400

 Score =  728 bits (1878), Expect = 0.0
 Identities = 403/742 (54%), Positives = 507/742 (68%), Gaps = 22/742 (2%)
 Frame = -1

Query: 2290 VNFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYF 2111
            VNF QISS LGQQELEGKRVPRMVSGKTLPCFHPWD A+RAGGFISDRFL+GLRPQEYYF
Sbjct: 669  VNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYF 728

Query: 2110 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDV 1931
            HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRD+DGSIVQF YGEDG+DV
Sbjct: 729  HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDV 788

Query: 1930 HKTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKK 1751
            H+TSFI++F  LA NQ+++ +KL   C    + + ++  K +P+ L  K  +FI    KK
Sbjct: 789  HQTSFIAKFEALALNQDMMSEKL---CSQ--LGEPDDSDKILPDGLRSKAEQFIREEIKK 843

Query: 1750 QRASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGEM 1571
             +   Q             K+  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAG+GEM
Sbjct: 844  YQH--QKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEM 901

Query: 1570 NVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEVN 1391
            NVTLG+PRLQEIL+  S  I+TP+MTCPL KGKT++DA  LA K+KK+TVADI+E +EV+
Sbjct: 902  NVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVS 961

Query: 1390 VVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLIM 1211
            V PF+V    + +++KLK+ +  P+ +    DIT++DC   L V+F+RELED+I+NHL++
Sbjct: 962  VAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVL 1021

Query: 1210 VSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGVD 1031
            +SK+SGI     +S+  N             S+++                    DLG+D
Sbjct: 1022 LSKISGIKKFMPDSQR-NASNEMDEDVSEGRSRET--KNDDDDDDDDADDEERAEDLGLD 1078

Query: 1030 AQKRKEQATDEMDYGEDG--METETSLVENVDAEGSESEGDDVGNKENDQGTD-GEPQIL 860
            AQK+K+Q TDEMDY +D    + E + +  +++E   SE +    + N  G+D G+ +I 
Sbjct: 1079 AQKQKQQTTDEMDYEDDSEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEI- 1137

Query: 859  DAEEEPKSVLASKSSDKREPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDFEVHLRFTD 680
             ++  P     S    + E                 KESDR  F   +GL FEVH +  +
Sbjct: 1138 -SQSSPNLENRSNPKSREEKTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKN 1196

Query: 679  EPHIILSKVVEKAAKNVYIKRSGNIERCSVID--------YNRD----------AKLAAL 554
            EPHI+L+++ EK AK VYI+  G I++C V D        Y  D           K+ AL
Sbjct: 1197 EPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQAL 1256

Query: 553  QTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVFDAYGIKVNI 374
             T GVDFGAFW M D +D+ ++ SN +H +L TYGVEAAR TII E+  VF +YGI VNI
Sbjct: 1257 HTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNI 1316

Query: 373  RHLTLIADYMTHTGAIRPFSR-HGIASSTSPFSKMSFETAAKFIVDAAYHGEVDDLESPS 197
            RHLTLIAD+MTH+G  RP SR  GIA S SPFSKMSFETA+KFIV+AA HG VD+LE+PS
Sbjct: 1317 RHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPS 1376

Query: 196  ARICLGLPVKVGTGSFDLLQQV 131
            +RICLGLPVK+GTGSFDL+Q+V
Sbjct: 1377 SRICLGLPVKMGTGSFDLMQKV 1398


>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
            gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
            putative isoform 2 [Theobroma cacao]
          Length = 1689

 Score =  728 bits (1878), Expect = 0.0
 Identities = 403/742 (54%), Positives = 507/742 (68%), Gaps = 22/742 (2%)
 Frame = -1

Query: 2290 VNFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYF 2111
            VNF QISS LGQQELEGKRVPRMVSGKTLPCFHPWD A+RAGGFISDRFL+GLRPQEYYF
Sbjct: 958  VNFQQISSFLGQQELEGKRVPRMVSGKTLPCFHPWDWAARAGGFISDRFLSGLRPQEYYF 1017

Query: 2110 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDV 1931
            HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLK+ YDHTVRD+DGSIVQF YGEDG+DV
Sbjct: 1018 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKISYDHTVRDADGSIVQFIYGEDGIDV 1077

Query: 1930 HKTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKK 1751
            H+TSFI++F  LA NQ+++ +KL   C    + + ++  K +P+ L  K  +FI    KK
Sbjct: 1078 HQTSFIAKFEALALNQDMMSEKL---CSQ--LGEPDDSDKILPDGLRSKAEQFIREEIKK 1132

Query: 1750 QRASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGEM 1571
             +   Q             K+  SLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAG+GEM
Sbjct: 1133 YQH--QKIKPKDFLNLLKLKFLSSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEM 1190

Query: 1570 NVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEVN 1391
            NVTLG+PRLQEIL+  S  I+TP+MTCPL KGKT++DA  LA K+KK+TVADI+E +EV+
Sbjct: 1191 NVTLGIPRLQEILMTASIDIRTPVMTCPLHKGKTKEDALCLANKMKKITVADILESMEVS 1250

Query: 1390 VVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLIM 1211
            V PF+V    + +++KLK+ +  P+ +    DIT++DC   L V+F+RELED+I+NHL++
Sbjct: 1251 VAPFAVDNGDICSIYKLKMMLGKPDKYFENSDITVKDCEHILKVVFLRELEDAIQNHLVL 1310

Query: 1210 VSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGVD 1031
            +SK+SGI     +S+  N             S+++                    DLG+D
Sbjct: 1311 LSKISGIKKFMPDSQR-NASNEMDEDVSEGRSRET--KNDDDDDDDDADDEERAEDLGLD 1367

Query: 1030 AQKRKEQATDEMDYGEDG--METETSLVENVDAEGSESEGDDVGNKENDQGTD-GEPQIL 860
            AQK+K+Q TDEMDY +D    + E + +  +++E   SE +    + N  G+D G+ +I 
Sbjct: 1368 AQKQKQQTTDEMDYEDDSEVEQNEGASLAALESEIDMSEDETGTIQINMIGSDNGKDEI- 1426

Query: 859  DAEEEPKSVLASKSSDKREPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDFEVHLRFTD 680
             ++  P     S    + E                 KESDR  F   +GL FEVH +  +
Sbjct: 1427 -SQSSPNLENRSNPKSREEKTGSEPKRKKMKAKFVRKESDRAIFNAIRGLCFEVHFKLKN 1485

Query: 679  EPHIILSKVVEKAAKNVYIKRSGNIERCSVID--------YNRD----------AKLAAL 554
            EPHI+L+++ EK AK VYI+  G I++C V D        Y  D           K+ AL
Sbjct: 1486 EPHILLAQIAEKTAKKVYIQSFGKIDQCRVTDCSENQVFYYGEDPKKRKSPSDKEKIQAL 1545

Query: 553  QTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVFDAYGIKVNI 374
             T GVDFGAFW M D +D+ ++ SN +H +L TYGVEAAR TII E+  VF +YGI VNI
Sbjct: 1546 HTTGVDFGAFWKMEDHIDVRYLYSNSIHAMLNTYGVEAARETIIREISHVFTSYGIAVNI 1605

Query: 373  RHLTLIADYMTHTGAIRPFSR-HGIASSTSPFSKMSFETAAKFIVDAAYHGEVDDLESPS 197
            RHLTLIAD+MTH+G  RP SR  GIA S SPFSKMSFETA+KFIV+AA HG VD+LE+PS
Sbjct: 1606 RHLTLIADFMTHSGRYRPMSRLGGIAESISPFSKMSFETASKFIVEAAKHGLVDNLETPS 1665

Query: 196  ARICLGLPVKVGTGSFDLLQQV 131
            +RICLGLPVK+GTGSFDL+Q+V
Sbjct: 1666 SRICLGLPVKMGTGSFDLMQKV 1687


>ref|XP_008240981.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Prunus mume]
          Length = 1637

 Score =  725 bits (1872), Expect = 0.0
 Identities = 403/751 (53%), Positives = 507/751 (67%), Gaps = 32/751 (4%)
 Frame = -1

Query: 2287 NFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYFH 2108
            N  QI+S LGQQELEGKRVP+M+SGKTLPCF PWD +SRAGGFI DRFLTGL PQEYYFH
Sbjct: 895  NLQQITSYLGQQELEGKRVPQMISGKTLPCFPPWDWSSRAGGFIIDRFLTGLHPQEYYFH 954

Query: 2107 CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDVH 1928
            CMAGREGLVDTAVKTSRSGYLQRC+IKNLECLKV YD+TVRD+DGSI+QF YGEDG+DVH
Sbjct: 955  CMAGREGLVDTAVKTSRSGYLQRCIIKNLECLKVSYDNTVRDADGSIIQFRYGEDGIDVH 1014

Query: 1927 KTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKKQ 1748
             TSFI +F  L AN+E +  K G    D    K N YIKD+P  L+ K  +F+ +L+ K+
Sbjct: 1015 MTSFIQKFESLIANKE-MFHKKGRRQMD----KLNPYIKDLPLALKEKAEKFVHNLALKE 1069

Query: 1747 RASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGEMN 1568
            +                 KY  SLAQPGEPVGVLA QSVGEPSTQMTLNTFHLAG+GEMN
Sbjct: 1070 K---DHNFQEDFLKLMEHKYLCSLAQPGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMN 1126

Query: 1567 VTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEVNV 1388
            VTLG+PRLQEIL+  +  I+TP+MTCPL+KG+++++A  LA KLKK+TVADIIE ++V  
Sbjct: 1127 VTLGIPRLQEILMTAANDIKTPVMTCPLQKGRSKEEAQELADKLKKITVADIIESMKVTF 1186

Query: 1387 VPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLIMV 1208
            VPF +   Q   ++KL++ +  PEH    ++ + ED  + L+++FVRELED+I+NH++++
Sbjct: 1187 VPFFIQDGQTCRIYKLEMTLHIPEHLRTIIEYSSEDWEEILEIVFVRELEDAIQNHILLL 1246

Query: 1207 SKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGVDA 1028
            SK+SGI N   +S+               S ++                     D G+DA
Sbjct: 1247 SKISGIKNFTPDSQPKASNETDENLSEKRSQREEE--DDDNGGADDGEHGEGVEDFGLDA 1304

Query: 1027 QKRKEQATDEMDYGEDGMETETSLVENVD-AEGSESEGDDVGNKENDQGTDGEPQILDAE 851
             KRK QATDEMDY EDG + E   V   D ++G ESE D+  N E + G DGE  ++DA 
Sbjct: 1305 HKRKLQATDEMDY-EDGCDDE---VREADLSDGDESEIDEEEN-EVEIGKDGEIGVIDAS 1359

Query: 850  EE-PKSVLAS-------KSSDKR-EPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDFEV 698
            +E P S L         KS +K+ + GS              KE+DR  FV AKG  FEV
Sbjct: 1360 DEMPGSPLEEAGDLAKPKSKEKKTKSGSQIRKKRKVRAEMVKKETDRAIFVSAKGFHFEV 1419

Query: 697  HLRFTD-EPHIILSKVVEKAAKNVYIKRSGNIERC--------SVIDYNRD--------- 572
            H RFTD EPHI+LS++ +K A+ VYI+RSG +  C         V+ + +D         
Sbjct: 1420 HFRFTDNEPHILLSQIAQKTAQKVYIQRSGKVADCKQITCDENQVLCFGKDPENKQSFSS 1479

Query: 571  ---AKLAALQTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVF 401
                ++ ALQT G+DFG FW + D LD+ +I SN++H +L TYGVEAAR TII E+  VF
Sbjct: 1480 KEKKEMPALQTTGIDFGTFWQLQDILDVRYIYSNNIHAMLNTYGVEAARETIIREINNVF 1539

Query: 400  DAYGIKVNIRHLTLIADYMTHTGAIRPFSRH-GIASSTSPFSKMSFETAAKFIVDAAYHG 224
             +YGI VNIRHLTLIAD+MTH G  RP +R  GI  S SPF+KM+FETA+KFIV+AAYHG
Sbjct: 1540 KSYGISVNIRHLTLIADFMTHAGGYRPLNRFGGIVESISPFNKMTFETASKFIVEAAYHG 1599

Query: 223  EVDDLESPSARICLGLPVKVGTGSFDLLQQV 131
            +VD LE+PSARICLGLPV VGTG FDL+ ++
Sbjct: 1600 QVDRLETPSARICLGLPVNVGTGCFDLMHKM 1630


>ref|XP_007203063.1| hypothetical protein PRUPE_ppa000153mg [Prunus persica]
            gi|462398594|gb|EMJ04262.1| hypothetical protein
            PRUPE_ppa000153mg [Prunus persica]
          Length = 1612

 Score =  724 bits (1868), Expect = 0.0
 Identities = 402/751 (53%), Positives = 506/751 (67%), Gaps = 32/751 (4%)
 Frame = -1

Query: 2287 NFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYFH 2108
            N  QI+S LGQQELEGKRVP+M+SGKTLPCF PWD +SRAGGFI DRFLTGL PQEYYFH
Sbjct: 870  NLQQITSYLGQQELEGKRVPQMISGKTLPCFPPWDWSSRAGGFIIDRFLTGLHPQEYYFH 929

Query: 2107 CMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDVH 1928
            CMAGREGLVDTAVKTSRSGYLQRC+IKNLECLKV YD+TVRD+DGSI+QF YGEDG+DVH
Sbjct: 930  CMAGREGLVDTAVKTSRSGYLQRCIIKNLECLKVSYDNTVRDADGSIIQFRYGEDGIDVH 989

Query: 1927 KTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKKQ 1748
             TSFI +F  L AN+E +  K G    D    K N YIKD+P  L+ K  +F+ +L+ K+
Sbjct: 990  MTSFIQKFESLIANKE-MFHKKGRRQMD----KLNPYIKDLPLALKEKAEKFVHNLALKE 1044

Query: 1747 RASLQXXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGQGEMN 1568
            +                 KY  SLAQPGEPVGVLA QSVGEPSTQMTLNTFHLAG+GEMN
Sbjct: 1045 K---DHNFQEDFLKLMEHKYLCSLAQPGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMN 1101

Query: 1567 VTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKVTVADIIEKIEVNV 1388
            VTLG+PRLQEIL+  +  I+TP+MTCPL+KG+++++A  LA KLKK+TVADIIE ++V  
Sbjct: 1102 VTLGIPRLQEILMTAANDIKTPVMTCPLQKGRSKEEAQELADKLKKITVADIIESMKVTF 1161

Query: 1387 VPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVRELEDSIENHLIMV 1208
            VPF +   Q   ++KL++ +  PEH    ++ + ED  + L+++FVRELED+I+NH++++
Sbjct: 1162 VPFFIQDGQTCRIYKLEMTLHVPEHLRTIIEYSSEDWEEILEIVFVRELEDAIQNHILLL 1221

Query: 1207 SKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXXXXXXXXXDLGVDA 1028
            SK+SGI N   +S+               S ++                     D G+DA
Sbjct: 1222 SKISGIKNFTPDSQPKASNETDENLPEKRSQREEE--DDDNGGADDGEHGEGVEDFGLDA 1279

Query: 1027 QKRKEQATDEMDYGEDGMETETSLVENVD-AEGSESEGDDVGNKENDQGTDGEPQILDAE 851
             KRK QATDEMDY EDG + E   V   D ++G ESE D+  N E + G DGE  ++DA 
Sbjct: 1280 HKRKLQATDEMDY-EDGCDDE---VREADLSDGDESEIDEEEN-EVEIGKDGEIGVIDAN 1334

Query: 850  EE-PKSVLAS-------KSSDKR-EPGSXXXXXXXXXXXXXXKESDRVFFVEAKGLDFEV 698
            +E P S L         KS +K+ + GS              KE+DR  FV AKG  FEV
Sbjct: 1335 DEMPGSPLEEAGDLAKPKSKEKKTKSGSQIRKKRKVRAEMVKKETDRAIFVSAKGFHFEV 1394

Query: 697  HLRFTD-EPHIILSKVVEKAAKNVYIKRSGNIERC--------SVIDYNRD--------- 572
            H RF D EPHI+LS++ +K A+ VYI+RSG +  C         V+ + +D         
Sbjct: 1395 HFRFADNEPHILLSQIAQKTAQKVYIQRSGKVADCKQITCDENQVLCFGKDPENKQSFSS 1454

Query: 571  ---AKLAALQTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIINEVKGVF 401
                ++ ALQT G+DFG FW + D LD+ +I SN++H +L TYGVEAAR TII E+  VF
Sbjct: 1455 KEKKEMPALQTTGIDFGTFWQLQDVLDVRYIYSNNIHAMLNTYGVEAARETIIREINNVF 1514

Query: 400  DAYGIKVNIRHLTLIADYMTHTGAIRPFSRH-GIASSTSPFSKMSFETAAKFIVDAAYHG 224
             +YGI VNIRHLTLIAD+MTH G  RP +R  GI  S SPF+KM+FETA+KFIV+AAYHG
Sbjct: 1515 KSYGISVNIRHLTLIADFMTHAGGYRPLNRFGGIVESISPFNKMTFETASKFIVEAAYHG 1574

Query: 223  EVDDLESPSARICLGLPVKVGTGSFDLLQQV 131
            +VD LE+PSARICLGLPV VGTG FDL+ ++
Sbjct: 1575 QVDRLETPSARICLGLPVNVGTGCFDLMHKM 1605


>ref|XP_009605274.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nicotiana
            tomentosiformis]
          Length = 1938

 Score =  719 bits (1856), Expect = 0.0
 Identities = 395/757 (52%), Positives = 501/757 (66%), Gaps = 37/757 (4%)
 Frame = -1

Query: 2290 VNFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYF 2111
            VNF QISS LGQQELEGKRVPRMVSGKTLPCF PWD ASRAGG++SDRFL+GLRPQEYYF
Sbjct: 1205 VNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDFASRAGGYVSDRFLSGLRPQEYYF 1264

Query: 2110 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDV 1931
            HCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKV YD+TVRD+DGSI+QF YGEDGVDV
Sbjct: 1265 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDV 1324

Query: 1930 HKTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKK 1751
            H+TSF+  F  L  NQE +  KL  G       K N+YI+ +P+ LE K+ +F    +KK
Sbjct: 1325 HRTSFLKNFKALKDNQETICQKLRQG------RKLNSYIERLPDGLEEKVKQFWGKKAKK 1378

Query: 1750 QRASLQ------------XXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMT 1607
                L+                         KYF SLA  GEPVGVLA QSVGEPSTQMT
Sbjct: 1379 LEKKLEKQVKKEEISKQLKKEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMT 1438

Query: 1606 LNTFHLAGQGEMNVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKV 1427
            LNTFHLAG+GEMNVTLG+PRLQEIL+  S+ I+TPIMTCP    K++DDA  L A++KK+
Sbjct: 1439 LNTFHLAGRGEMNVTLGIPRLQEILMTASDAIKTPIMTCPFLGWKSKDDAQSLLAEVKKI 1498

Query: 1426 TVADIIEKIEVNVVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVR 1247
            TVAD+IE +EVN++P S+Y  QV+ ++KL +K+   E       ++ EDC  TL  +F+R
Sbjct: 1499 TVADMIESMEVNLLPLSIYNHQVSQLYKLTVKLKEHEF------VSSEDCDYTLKYVFLR 1552

Query: 1246 ELEDSIENHLIMVSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXX 1067
            ELED+IE+HL ++SK++GI N    S++V            +++  +             
Sbjct: 1553 ELEDAIESHLALLSKINGIKNFKSSSDSV------ASHETEENASSTRHEEEMLDDDDEA 1606

Query: 1066 XXXXXXXDLGVDAQKRKEQATDEMDYGEDGMETETSLVENVDAEGSESEGD---DVGNKE 896
                   DL  DAQKRK+Q TDEMDY +DG E E S  E   AE  + + D   ++GN++
Sbjct: 1607 EDERTEEDLSSDAQKRKQQTTDEMDY-DDGPEDEASEAETT-AEVEDEKSDQTHEIGNRD 1664

Query: 895  NDQGTD--GEPQILDAEEEPKSVLASKSSDKREPGSXXXXXXXXXXXXXXKESDRVFFVE 722
             ++  D   E Q      E  ++  +KS  K                   K+SDR  F+ 
Sbjct: 1665 EEETGDHGNEEQTSKLHSEESNIKTAKSKTK-----TTVQQKKKKETRSKKDSDRSVFIA 1719

Query: 721  AKGLDFEVHLRFTDEPHIILSKVVEKAAKNVYIKRSGNIERCSVIDY------------- 581
             +GL FEVH RF +EPHI+L++V +K AK VYIK +G IE+C ++ Y             
Sbjct: 1720 VEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYIKNAGKIEQCRMVKYDVSENTVMWDVKQ 1779

Query: 580  ------NRDAKLAALQTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIIN 419
                  + D+   AL+ AGVDFG FW+M DD+D+N I +N++ ++L TYGVEAARA II 
Sbjct: 1780 IKNQSQDTDSAYWALKAAGVDFGTFWEMQDDIDVNRIYTNNIRSMLNTYGVEAARAAIIR 1839

Query: 418  EVKGVFDAYGIKVNIRHLTLIADYMTHTGAIRPFSRHG-IASSTSPFSKMSFETAAKFIV 242
            EVK VF  YG++++ RHL+LIADYMTHTG  +P SRHG I+ S SPF KMSFETA+KFIV
Sbjct: 1840 EVKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIV 1899

Query: 241  DAAYHGEVDDLESPSARICLGLPVKVGTGSFDLLQQV 131
            +AA HG  D+LE+PS+RICLGLPVK+GTG FD++Q++
Sbjct: 1900 EAASHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKL 1936


>ref|XP_009790932.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Nicotiana
            sylvestris]
          Length = 1681

 Score =  718 bits (1853), Expect = 0.0
 Identities = 395/757 (52%), Positives = 501/757 (66%), Gaps = 37/757 (4%)
 Frame = -1

Query: 2290 VNFTQISSLLGQQELEGKRVPRMVSGKTLPCFHPWDPASRAGGFISDRFLTGLRPQEYYF 2111
            VNF QISS LGQQELEGKRVPRMVSGKTLPCF PWD ASRAGG++SDRFL+GLRPQEYYF
Sbjct: 948  VNFQQISSYLGQQELEGKRVPRMVSGKTLPCFPPWDFASRAGGYVSDRFLSGLRPQEYYF 1007

Query: 2110 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLECLKVGYDHTVRDSDGSIVQFCYGEDGVDV 1931
            HCMAGREGLVDTAVKTSRSGYLQRCLIKNLE LKV YD+TVRD+DGSI+QF YGEDGVDV
Sbjct: 1008 HCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDV 1067

Query: 1930 HKTSFISEFNILAANQEVVLDKLGGGCEDALVMKFNNYIKDMPEPLEGKINEFISSLSKK 1751
            H+TSF+  F  L  NQE +  KL  G       K N+YI+ +P+ LE K+ +F    +KK
Sbjct: 1068 HRTSFLKNFKALKDNQETICQKLRQG------RKLNSYIERLPDGLEEKVKQFWGKKTKK 1121

Query: 1750 QRASLQ------------XXXXXXXXXXXXXKYFRSLAQPGEPVGVLAAQSVGEPSTQMT 1607
                L+                         KYF SLA  GEPVGVLA QSVGEPSTQMT
Sbjct: 1122 LEKKLEKRVKKEEISKQLKKEEVDFLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMT 1181

Query: 1606 LNTFHLAGQGEMNVTLGVPRLQEILVRDSEKIQTPIMTCPLRKGKTRDDADRLAAKLKKV 1427
            LNTFHLAG+GEMNVTLG+PRLQEIL+  S+ I+TPIMTCP    K++DDA  L A++KK+
Sbjct: 1182 LNTFHLAGRGEMNVTLGIPRLQEILMTASDAIKTPIMTCPFLGWKSKDDAQSLLAEVKKI 1241

Query: 1426 TVADIIEKIEVNVVPFSVYKQQVTTVFKLKIKVFGPEHFPPYMDITLEDCMQTLDVLFVR 1247
            TVAD+IE +EVN++P S+Y  QV+ ++KL +K+   E       ++ EDC  TL  +F+R
Sbjct: 1242 TVADMIESMEVNLLPLSIYNHQVSQLYKLTVKLKEHEF------VSSEDCDYTLKYVFLR 1295

Query: 1246 ELEDSIENHLIMVSKVSGITNMGRESEAVNXXXXXXXXXXXDSSKQSHXXXXXXXXXXXX 1067
            ELED+IE+HL ++SK++GI N    S++V            +++  +             
Sbjct: 1296 ELEDAIESHLALLSKINGIKNFKSSSDSV------ASHETEENASSTRYEEHMLDDDDEA 1349

Query: 1066 XXXXXXXDLGVDAQKRKEQATDEMDYGEDGMETETSLVENVDAEGSESEGD---DVGNKE 896
                   DL  DAQKRK+Q TDEMDY +DG E E S  E   AE  + + D   ++GN++
Sbjct: 1350 EDERTEEDLSSDAQKRKQQTTDEMDY-DDGPEDEASEAETT-AEVEDEKSDQAHEIGNRD 1407

Query: 895  NDQGTD--GEPQILDAEEEPKSVLASKSSDKREPGSXXXXXXXXXXXXXXKESDRVFFVE 722
             ++  D   E Q      E  ++  +KS  K                   K+SDR  F+ 
Sbjct: 1408 EEETGDHGNEEQTSKLYSEESNIKTAKSKTK-----TTVQQKKKKETRSKKDSDRSVFIA 1462

Query: 721  AKGLDFEVHLRFTDEPHIILSKVVEKAAKNVYIKRSGNIERCSVIDY------------- 581
             +GL FEVH RF +EPHI+L++V +K AK VYIK +G I++C ++ Y             
Sbjct: 1463 VEGLHFEVHFRFVNEPHILLAQVAQKTAKKVYIKNAGKIDQCRMVKYDVSENTVMWDEKQ 1522

Query: 580  ------NRDAKLAALQTAGVDFGAFWDMIDDLDINHIVSNDMHTVLRTYGVEAARATIIN 419
                  + D+   AL+ AGVDFG FW+M DDLD+N I +N++ ++L TYGVEAARA II 
Sbjct: 1523 TKNQSQDTDSAYWALKAAGVDFGTFWEMQDDLDVNRIYTNNIRSMLNTYGVEAARAAIIR 1582

Query: 418  EVKGVFDAYGIKVNIRHLTLIADYMTHTGAIRPFSRHG-IASSTSPFSKMSFETAAKFIV 242
            EVK VF  YG++++ RHL+LIADYMTHTG  +P SRHG I+ S SPF KMSFETA+KFIV
Sbjct: 1583 EVKTVFGIYGVEIDFRHLSLIADYMTHTGGYQPMSRHGSISESLSPFLKMSFETASKFIV 1642

Query: 241  DAAYHGEVDDLESPSARICLGLPVKVGTGSFDLLQQV 131
            +AA HG  D+LE+PS+RICLGLPVK+GTG FD++Q++
Sbjct: 1643 EAASHGLTDNLETPSSRICLGLPVKMGTGCFDIMQKL 1679