BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver31_contig00004665
         (4201 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...  1268   0.0  
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...  1211   0.0  
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]    1186   0.0  
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]             1149   0.0  
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]             1145   0.0  
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]       1143   0.0  
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...  1140   0.0  
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...  1140   0.0  
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]          1138   0.0  
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]             1137   0.0  
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...  1136   0.0  
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]             1135   0.0  
gb|AFB73911.1| polyprotein [Citrus sinensis]                         1134   0.0  
gb|AFB73912.1| polyprotein [Citrus sinensis]                         1130   0.0  
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                 1127   0.0  
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...  1116   0.0  
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]    1105   0.0  
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...  1103   0.0  
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                            1084   0.0  
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...  1066   0.0  

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 1268 bits (3282), Expect = 0.0
 Identities = 669/1351 (49%), Positives = 892/1351 (66%), Gaps = 23/1351 (1%)
 Frame = -1

Query: 4087 IIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWT---DEKWADLDLMACSTI 3917
            I KF G+N+F+ WQ       + M+ +   +   A L KD       + A L+  A STI
Sbjct: 8    IDKFTGRNSFSLWQ-------IKMRALLKQQGFWAPLSKDKNAVVTPEMAILEEKAHSTI 60

Query: 3916 RLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHIN 3737
             LCL+ D+    S E +A  LW KLE LY+ K LT++L LK+RL   RM+ G  + +H+ 
Sbjct: 61   MLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLREHLE 120

Query: 3736 EFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVV 3557
            + N +  +L NI V I D D ++ILL SLP S++ FV   + GK       D +  ++V 
Sbjct: 121  QLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGK-------DTVSLEEVR 173

Query: 3556 SALQAKALRKQE--FSDEAQVEGLFVDXXXXXXXXXXXXXXXXXS---DIECYYCRKPGH 3392
            SAL ++ LR +    S + Q  GLF                       D  C YC++ GH
Sbjct: 174  SALHSRELRHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDVCNYCKEKGH 233

Query: 3391 IRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGWML 3212
             + DC K      K+++S+ ++V A+VAE     E+ +       L     ++ +D W+L
Sbjct: 234  WKFDCPK------KKKQSEKQSVSAAVAEEDTNSEEDIA------LVADEHTHHSDVWVL 281

Query: 3211 DSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHV 3035
            DSGASYH+CP ++ FTTY +V+GG++ M NS+ CK VG G++++R+H G   TL+EVRHV
Sbjct: 282  DSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHV 341

Query: 3034 PDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHGNLYFLRGDIVCGGAMVS 2855
            P + K+LISL +L+S G+ ++ + G L+V+   +L + G   G LYFL+G  V G A V+
Sbjct: 342  PLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVA 401

Query: 2854 QSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFG 2675
             S +  Q + T+LWH+RLGHM E+GM +LS + LL G K   L+FCEHC+FGK  R+ F 
Sbjct: 402  SS-EFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFP 460

Query: 2674 TAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKK 2495
             A+H T+G LDYIHSD WGP R  S GG R+FV+ IDD+SR  W+Y MKHK+E  + FK+
Sbjct: 461  KAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKE 520

Query: 2494 WKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRT 2315
            WK ++E Q G+ +K++R+DNG E+      +FC+++GI RH TV+ TPQQNGVAERMN+T
Sbjct: 521  WKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQT 580

Query: 2314 LLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVF 2135
            LLERARCMLSNA LD+ +WAEAV+TACYL+NR P T I+CK+PME+W+G   +YSNL+ F
Sbjct: 581  LLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAF 640

Query: 2134 GCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKK 1955
            GC AY+HV E KL  RAKK +F+GY  GVKG+R+W P   + I+SR+V F+E  +L +  
Sbjct: 641  GCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTIV 700

Query: 1954 STDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXXESTQQQI- 1778
                 S+              QVE +V  + +                      T+  I 
Sbjct: 701  KPTTTSETGSLDK--------QVEFQVIQNES---------DLKEPEEEDQEPQTETDIP 743

Query: 1777 ENIPS-----LTSQRERR----PPTRYGFDEYASYALSVFED----EPFTFEEAMSTTHA 1637
            E++PS     +   R RR    PPTRYGF++   YAL V E+    EP T++EA+ ++ +
Sbjct: 744  ESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDS 803

Query: 1636 IEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYKARL 1457
             +W  AM +EM+SLHKN TW+LV  P GRK I CKWV+  K+GI  ++G    V+YKAR+
Sbjct: 804  EKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEG----VKYKARV 859

Query: 1456 VAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYM 1277
            VA+G+ QREGVDYNE+FSPVV+HTSIRVLLA VA  +LELEQLDVKTAFLHG LEE+IYM
Sbjct: 860  VARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYM 919

Query: 1276 SQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFP 1097
            +QP G++V GKE++VC+L+KSLYGLKQSPRQWYKRFD++M++  YTRS YD CVY+ +  
Sbjct: 920  TQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLN 979

Query: 1096 GGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKL 917
              SF+YL+LYVDDMLIAAK K +I  LK  LS EFEMKDLG A+KILGMEI RDR + KL
Sbjct: 980  DDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKL 1039

Query: 916  CLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSL 737
             L+Q+SY++KVL RFGM +SK I  P  + + L+    P + EE E+MS+VPYA+AVGSL
Sbjct: 1040 FLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSL 1099

Query: 736  MYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCG 557
            MYAMVCTRPD A AV +VSR+M  PGR HW AVK I RYL GT D+GL++  +    V G
Sbjct: 1100 MYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTG 1159

Query: 556  FVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWL 377
            + DSDYAGD D  RS +GY FTL G+ +SW++ LQP V LSTTEAEY+A+TEA KE +WL
Sbjct: 1160 YSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWL 1219

Query: 376  RGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKV 197
            +GLV DLG+      V CDS SAI LAK+QV+H RTKHID+RYH +R       +++ KV
Sbjct: 1220 KGLVSDLGLHHDQATVYCDSLSAICLAKDQVHHERTKHIDVRYHFLR---SEKRIKVKKV 1276

Query: 196  DTEDNPADMLTKVVPKVKFERCLSLINTARC 104
             T DNPADM TK VP+ KF+ CL L+N   C
Sbjct: 1277 GTADNPADMFTKPVPQSKFQHCLDLLNIRSC 1307


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score = 1211 bits (3134), Expect = 0.0
 Identities = 658/1349 (48%), Positives = 858/1349 (63%), Gaps = 24/1349 (1%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 3914
            +D+        F+ WQ  ++ +L       A+         DW++++    D  A S I 
Sbjct: 213  YDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRT-HDWSNDE-KKRDRKAMSYIH 270

Query: 3913 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 3734
            L LS +I      E  A  LW KLE++ + KDLTS+++LK+ L   ++    S+MDH++ 
Sbjct: 271  LHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMDHLSA 330

Query: 3733 FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 3554
            F +I +DL ++ V   + D  +ILLCSLP SY  F D +L  +       D L   +V  
Sbjct: 331  FKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSR-------DTLTLKEVYD 383

Query: 3553 ALQAKALRKQEFSDE---AQVEGLFVDXXXXXXXXXXXXXXXXXSDIE-----------C 3416
            AL  K   K+    E   +Q EGL V                  S              C
Sbjct: 384  ALHVKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSC 443

Query: 3415 YYCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKS 3236
             YC++ GH   +C KL  +D++  K   K       EG  A+        E ++     +
Sbjct: 444  KYCKRDGHDIFECWKLHDKDKRTGKYVPKG--KKEEEGKAAVVTDEKSDAELLVAYAGCA 501

Query: 3235 YLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVIT 3059
              +D W+L++   YHMCP++D F TY  V  GTV+MG+   C+  G+GTVQ++   G I 
Sbjct: 502  QTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIR 561

Query: 3058 TLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGE-RHGNLYFLRGD 2882
            TLS+VRH+P+L++SLISL  L+  GYKY+   G LKV     + M  + +  NLY LRG 
Sbjct: 562  TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGT 621

Query: 2881 IVCGG-AMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCI 2705
             + G  A VS S+     ++T LWHMRLGHM+E G++ LS +GLL G+   KL FCEHCI
Sbjct: 622  TILGNVAAVSDSLSNS--DATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCI 679

Query: 2704 FGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKH 2525
            FGK  R  F T+ H T+G+LDY+HSD+WGP+R  S GG R+ +T +DD+SR+VW Y +KH
Sbjct: 680  FGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKH 739

Query: 2524 KNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQ 2345
            K +  +VFK+WKTMVE+Q  R VK +R+DNG E+     K +C+ +GIVRH+TV  TPQQ
Sbjct: 740  KYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQ 799

Query: 2344 NGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGN 2165
            NGVAERMNRT++ +ARC+LSNA L K +WAEAV+TACYL+NRSPS AI  K+P+EVW+G+
Sbjct: 800  NGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGS 859

Query: 2164 LVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 1985
              NYS+LRVFGC AY HV   KL  RA K IFLGYP GVKGY+LWCPE  K +ISR+V F
Sbjct: 860  PANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVF 919

Query: 1984 NERAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 1805
            +E  ML  K ST+   +            S+QVE  + S                     
Sbjct: 920  HESVMLHDKPSTNVPVE-------SQEKASVQVEHLISSGHAPEKEDVAINQDEPVIEDS 972

Query: 1804 XXESTQQQIE-NIPSLTSQRERRPPTRYGFD-EYASYALSVFED-----EPFTFEEAMST 1646
                 QQ  + +I     +R  +PP RY  +    +YALSV E+     EP T+ EA+ +
Sbjct: 973  NSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVS 1032

Query: 1645 THAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYK 1466
                 W TAM +EM+SL KNHTWELVKLPK +K I CKW++  K+GI  S       RYK
Sbjct: 1033 DDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSS----DEARYK 1088

Query: 1465 ARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEED 1286
            ARL+AKGY+Q  G+D+N+VFSPVVKH+SIR LL+ VA  D ELEQ+DVKTAFLHG LEED
Sbjct: 1089 ARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEED 1148

Query: 1285 IYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFK 1106
            IYM QP G+ V GKE+ VCRL+KSLYGLKQSPRQWYKRFD+FML QK+ RS YD CVY K
Sbjct: 1149 IYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLK 1208

Query: 1105 KFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSK 926
               G S +YLLLYVDDMLIAAK KSEI  LK QLS EFEMKDLG AKKILGMEITR R  
Sbjct: 1209 VVDG-SAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHS 1267

Query: 925  GKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAV 746
             KL L+QK Y+EKVLRRF MH++K +S P+ +  +LS  LCP +  ++E+MS+VPY++AV
Sbjct: 1268 FKLYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAV 1327

Query: 745  GSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLK 566
            GSLMYAMVC+RPD + A+ +VSRYMANPG+ HW AV+ I RYL GT    L F + +   
Sbjct: 1328 GSLMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSRD-G 1386

Query: 565  VCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEA 386
            + G+VDSD+AGD D+ RS +GY FT+ G  +SW++ LQ  VALSTTEAEY+A++EA KEA
Sbjct: 1387 LVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEA 1446

Query: 385  LWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQL 206
            +WLRGL   L  +   + + CDSQSAI L K+Q++H RTKHID+RYH +R ++  G V++
Sbjct: 1447 IWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGLIAEGDVKI 1506

Query: 205  LKVDTEDNPADMLTKVVPKVKFERCLSLI 119
             K+   DNPADM+TK VP  KFE C SL+
Sbjct: 1507 CKISIHDNPADMMTKPVPATKFELCSSLV 1535


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 1186 bits (3067), Expect = 0.0
 Identities = 635/1261 (50%), Positives = 823/1261 (65%), Gaps = 24/1261 (1%)
 Frame = -1

Query: 3829 LQKDLTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSL 3650
            + KDLTS+++LK++L   ++    S+MDH++ F +I +DL ++ V   + D  +ILLCSL
Sbjct: 1    MTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSL 60

Query: 3649 PPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVSALQAKALRKQEFSDE---AQVEGLFVDX 3479
            P SY  F D +L  +       D L   +V  AL AK   K+    E   +Q EGL V  
Sbjct: 61   PSSYANFRDTILYSR-------DTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRG 113

Query: 3478 XXXXXXXXXXXXXXXXSDIE-----------CYYCRKPGHIRADCLKLKARDEKREKSDS 3332
                            S              C YC++ GH  ++C KL+ +D++  K   
Sbjct: 114  RQQEKNTNNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIP 173

Query: 3331 KNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYRE 3152
            K       EG  A+        E ++     +  +D W+LD+  +YHMCP++D F TY  
Sbjct: 174  KG--KKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEA 231

Query: 3151 VNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKY 2975
            V GGTV+MG+   C+  G+GTVQ++   G I TL +VRH+P+L++SLISL  L+  GYKY
Sbjct: 232  VQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKY 291

Query: 2974 AAEYGFLKVFYNGSLKMTGE-RHGNLYFLRGDIVCGG-AMVSQSIDEKQVESTRLWHMRL 2801
            +   G LKV     + M  + ++ NLY LRG  + G  A VS S+     ++T LWHMRL
Sbjct: 292  SGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNS--DATNLWHMRL 349

Query: 2800 GHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVW 2621
            GHMSE G++ LS +GLL G+   KL FCEHCIFGK  R  F T+ H T+G+LDY+HSD+W
Sbjct: 350  GHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLW 409

Query: 2620 GPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRS 2441
            GP+R  S GGAR+ +T +DD+SR+VW Y +KHK +  +VFK+WKTMVE+Q  R VK +R+
Sbjct: 410  GPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRT 469

Query: 2440 DNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIW 2261
            DNG E      K +C+ +GIVRH+TV  TPQQNGVAERMNRT++ +ARCMLSNASL K +
Sbjct: 470  DNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQF 529

Query: 2260 WAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKEDKLGVRAK 2081
            WAEAV+TACYL+NRSPS AI  K+P+EVW+G+  NYS+LRVFGC AY HV   KL  R  
Sbjct: 530  WAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVI 589

Query: 2080 KAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKKSTDWDSQIXXXXXXXXXX 1901
            K IFLGY  GVKGY+LWCPE  K +ISR+V F+E  ML  K ST+               
Sbjct: 590  KCIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTN-------VPVESQEK 642

Query: 1900 XSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXXESTQQQIE-NIPSLTSQRERRPPTRY 1724
             S+QVE  + S                          QQ  + +I     +R  +PP RY
Sbjct: 643  VSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAKDRPKRNTKPPRRY 702

Query: 1723 GFD-EYASYALSVFED-----EPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKL 1562
              +    +YALSV E+     EP T+ +A+ +     W TAM +EM+SL KNH+WEL KL
Sbjct: 703  IEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKL 762

Query: 1561 PKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTS 1382
            PK +K I CKW++  K+G+  S       RYKARLVAKGY+Q  G+D+N+VFSPVVKH+S
Sbjct: 763  PKEKKPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSS 818

Query: 1381 IRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGL 1202
            IR LL+ VA  D ELEQ+DVKTAFLHG LEEDIYM QP G+ V GKE+ VCRL+KSLYGL
Sbjct: 819  IRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGL 878

Query: 1201 KQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEID 1022
            KQSPRQWYKRFD+FML QK+ RS YD CVY  K   GS +YLLLYVDDMLIAAK KSEI 
Sbjct: 879  KQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIA 937

Query: 1021 VLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISV 842
             LK QLS EFEMKDLG AKKILGMEITR+R  GKL L+QK Y+EKVL RF MH++K +S 
Sbjct: 938  KLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHDAKLVST 997

Query: 841  PIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANP 662
             + +  +LS  LCP +  ++E+MS+VPY++AV SLMYAMVC+RPD + A+ +VSRYMANP
Sbjct: 998  LLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANP 1057

Query: 661  GRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSG 482
            G+ HW AV+ I RYL GT    L F +  S  + G+VDSD+AGD D+ RS +GY FT+ G
Sbjct: 1058 GKEHWKAVQWIFRYLRGTSSACLQFGR-SSDGLVGYVDSDFAGDLDRRRSLTGYVFTVGG 1116

Query: 481  APISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIH 302
              +SW++ LQ  VALSTTEAEY+A++EA KE +WLRGL  +L  +   + + CDSQSAI 
Sbjct: 1117 CAVSWKASLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAIC 1176

Query: 301  LAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSL 122
            L K+Q++H RTKHID+RYH +R V+  G V++ K+ T DNP DM+TK VP  KFE C SL
Sbjct: 1177 LTKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKFELCSSL 1236

Query: 121  I 119
            +
Sbjct: 1237 V 1237


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 1149 bits (2971), Expect = 0.0
 Identities = 623/1342 (46%), Positives = 845/1342 (62%), Gaps = 18/1342 (1%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 3914
            F+I KFNG+N F+ W+  ++ IL     + AI  +PA    D TDEKW ++D  A + + 
Sbjct: 5    FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRPA----DITDEKWKEMDDNAVANLH 59

Query: 3913 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 3734
            L ++  +  + + + +AK +W+ L KLY  K L + ++LKRRL+  RM    S+ DHIN 
Sbjct: 60   LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINT 119

Query: 3733 FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 3554
             N + S L+     I++ +++ +LL SLP SYD  +  + +         D L FDDV  
Sbjct: 120  LNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNI-----ADTLHFDDVAG 174

Query: 3553 AL---QAKALRKQEFSDEAQ-------VEGLFVDXXXXXXXXXXXXXXXXXSDIECYYCR 3404
            A+   +++   K+E S+ ++         G   +                  +I+CY C 
Sbjct: 175  AILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCG 234

Query: 3403 KPGHIRADCLKLKARDEKR-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLN 3227
              GH++ +C  +K   EK  E S S+  VAS ++  E L      + E   +   +  LN
Sbjct: 235  MKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEIL------YSEAATSSKGERRLN 288

Query: 3226 DGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLS 3050
            D W++DSGA++HM P +D F +Y  ++ G+V MGN +A +  GVGT++++ H G +  + 
Sbjct: 289  DVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 3049 EVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVC 2873
             VRHV  L+K+L+S+G L+ LG K   E G LKV     + M  E+   NLY L GD + 
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 2872 -GGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 2696
               A V+ +  E   E+T +WH RLGHMSE+G+ VL  + LL G KT  L FCEHC+  K
Sbjct: 409  EADASVAAASQE---ETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISK 465

Query: 2695 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 2516
            Q R  F      ++ +LD IHSDVW  S  +S GGAR+FV+FIDD+SRR+W+Y +K K++
Sbjct: 466  QHRLKFARVTTRSKHILDLIHSDVW-ESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSD 524

Query: 2515 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 2336
            V  VFK +K  +E + G+ +K +R+DNGGEY++     FC+++GIVR FTV  TPQQNGV
Sbjct: 525  VFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 2335 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2156
            AERMNRTLLER R ML  A + K +WAEAV TACY++NRSPSTAI  K+PME+W G  V+
Sbjct: 585  AERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVD 644

Query: 2155 YSNLRVFGCPAYFHVKED---KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 1985
            YS+L VFGCP Y         KL  +++K IFLGY   VKGYRLW P   K ++SRDV F
Sbjct: 645  YSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVF 704

Query: 1984 NERAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 1805
             E   L SK+  D  S+             +Q+E++   S +                  
Sbjct: 705  AENE-LQSKQKNDSTSK---------ETAIVQMEEKSKESDSSEAEPVHEEQEPDDVNNG 754

Query: 1804 XXESTQQQIENIPSLTSQRERRPPTRYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWK 1625
               ST+Q  +  PS  S         Y    + +Y L   E EP TF EA++ + A +W 
Sbjct: 755  VRRSTRQTQK--PSWQSD--------YVMTSHDAYCLITEEGEPSTFHEALNGSDASQWM 804

Query: 1624 TAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLVAK 1448
            TAM EEM++LH+N TWELV+LPKGRK IG KWVY +K DG    +      RY+ARLV K
Sbjct: 805  TAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVE------RYRARLVVK 858

Query: 1447 GYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQP 1268
            GYAQ+EG+D+NE+FSPVV+ T+IRV+LA  A  DL LEQLDVKTAFLHG LEE+IYM QP
Sbjct: 859  GYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQP 918

Query: 1267 IGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGS 1088
             G++  GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++   Y+R   D C Y+K+F G  
Sbjct: 919  EGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGND 978

Query: 1087 FVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLT 908
            F+ LLLYVDDML+   +K  +  LK QL+ EF+MKDLGPA KILGM+I RDR   K+ L+
Sbjct: 979  FIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLS 1038

Query: 907  QKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYA 728
            QK+YL KVLRRF M + K IS P+P   KLS  + P+   E   MS+VPYA+AVGSLMYA
Sbjct: 1039 QKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYA 1098

Query: 727  MVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVD 548
            M+CTRPD AQAVG+VSR+MA+PG+ HW AVK I+RY+ GT  + + F   + L V G+VD
Sbjct: 1099 MICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE-LTVRGYVD 1157

Query: 547  SDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGL 368
            SD+AGD DK +ST+GY FTL+G  +SW S LQ +VALSTTEAEY+A T+A KEA+W++ L
Sbjct: 1158 SDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRL 1217

Query: 367  VKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTE 188
            +++LG  Q  + V CDSQSA+H+A+N  +H+RTKHI ++YH VREVV+ G V + K+ T 
Sbjct: 1218 MEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTN 1277

Query: 187  DNPADMLTKVVPKVKFERCLSL 122
            DN AD +TK +   KF  C SL
Sbjct: 1278 DNLADAMTKSINTDKFIWCRSL 1299


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 1145 bits (2962), Expect = 0.0
 Identities = 618/1341 (46%), Positives = 842/1341 (62%), Gaps = 18/1341 (1%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 3914
            F+I KFNG+N F+ W+  ++ IL     + AI  +PA    D TDEKW ++D  A + + 
Sbjct: 5    FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRPA----DITDEKWKEMDDNAVANLH 59

Query: 3913 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 3734
            L ++  +  + + + +AK +W+ L KLY  K L + ++LKRRL+  RM    S+ DHIN 
Sbjct: 60   LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINT 119

Query: 3733 FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 3554
             N + S L+     I++ +++ +LL SLP SYD  +  + +         D L FDDV  
Sbjct: 120  LNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIT-----DTLHFDDVAG 174

Query: 3553 AL---QAKALRKQEFSDEAQ-------VEGLFVDXXXXXXXXXXXXXXXXXSDIECYYCR 3404
            A+   +++   K+E S+ ++         G   +                  +I+CY C 
Sbjct: 175  AILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCG 234

Query: 3403 KPGHIRADCLKLKARDEKR-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLN 3227
              GH++ +C  +K   EK  E S S+  VAS ++  E L      + E   +   +  LN
Sbjct: 235  MKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEIL------YSEAATSSKGERRLN 288

Query: 3226 DGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLS 3050
            D W++DSGA++HM P +D F +Y  ++ G+V MGN +A +  GVGT++++ H G +  + 
Sbjct: 289  DVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 3049 EVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVC 2873
             VRHV  L+K+L+S+G L+ LG K   E G LKV     + M  E+   NLY L GD + 
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 2872 -GGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 2696
               A V+ S  E   E+T +WH RLGHMSE+G+ VL+ + LL G K   L FCEHC+  K
Sbjct: 409  EADASVAASSQE---ETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISK 465

Query: 2695 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 2516
            Q R  F      ++ +LD IHSDVW  S  +S GGAR+FV+FIDD+SRR+W+Y +K K++
Sbjct: 466  QHRLKFARVTTRSKHILDLIHSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSD 524

Query: 2515 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 2336
            V  VFK +K  +E +  + +K +R+DNGGEYI+     FC+++GIVR FTV  TPQQNGV
Sbjct: 525  VFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 2335 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2156
            AERMNRTLLER R ML  A + K +WAEAV TACY++NRSPSTAI  K+PME+W G  V+
Sbjct: 585  AERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPVD 644

Query: 2155 YSNLRVFGCPAYFHVKED---KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 1985
            YS+L VFGCP Y         KL  +++K IFLGY   VKGYRLW P   K ++SRDV F
Sbjct: 645  YSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVF 704

Query: 1984 NERAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 1805
             E  +   +K+     +             +Q+E++   S +                  
Sbjct: 705  AENELQSEQKNDSTSKETAI----------VQMEEKSKESDSSEAESVHEEQEPDDVNDG 754

Query: 1804 XXESTQQQIENIPSLTSQRERRPPTRYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWK 1625
               ST+Q  +  PS  S         Y    + +Y L   E EP TF EA++ + A +W 
Sbjct: 755  VRRSTRQTQK--PSWQSD--------YVMTSHDAYCLITEEGEPSTFHEALNGSDASQWM 804

Query: 1624 TAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLVAK 1448
            TAM EEM++LH+N TWELV+LPKGRK IG KWVY +K DG    +      RY+ARLV K
Sbjct: 805  TAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVE------RYRARLVVK 858

Query: 1447 GYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQP 1268
            GYAQ+EG+D+NE+FSPVV+ T+IRV+LA  A  DL LEQLDVKTAFLHG LEE+IYM QP
Sbjct: 859  GYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQP 918

Query: 1267 IGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGS 1088
             G++  GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++   Y+R   D C Y+K+F G  
Sbjct: 919  EGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGND 978

Query: 1087 FVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLT 908
            F+ LLLYVDDML+   +K  +  LK QL+ EF+MKDLGPA KILGM+I RDR   K+ L+
Sbjct: 979  FIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLS 1038

Query: 907  QKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYA 728
            QK+YL KVLRRF M + K IS P+P   KLS  + P+   E   MS+VPYA+AVGSLMYA
Sbjct: 1039 QKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYA 1098

Query: 727  MVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVD 548
            M+CTRPD AQAVG+VSR+MA+PG+ HW AVK I+RY+ GT  + + F   + L V G+VD
Sbjct: 1099 MICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE-LTVRGYVD 1157

Query: 547  SDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGL 368
            SD+AGD DK +ST+GY FTL+G  +SW S LQ +VALSTTEAEY+A T+A KEA+W++ L
Sbjct: 1158 SDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRL 1217

Query: 367  VKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTE 188
            +++LG  Q  + V CDSQSA+H+A+N  +H+RTKHI ++YH VREVV+ G V + K+ T 
Sbjct: 1218 MEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTN 1277

Query: 187  DNPADMLTKVVPKVKFERCLS 125
            DN AD++TK +   KF  C S
Sbjct: 1278 DNLADVMTKPINADKFVWCRS 1298


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 1143 bits (2956), Expect = 0.0
 Identities = 629/1351 (46%), Positives = 839/1351 (62%), Gaps = 27/1351 (1%)
 Frame = -1

Query: 4090 DIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPK-DWTDEKWADLDLMACSTIR 3914
            +I KF    +F+ W+  +K +LV      A+  +          D+K   +   A ST+ 
Sbjct: 7    EIEKFTIGGDFSLWKLKMKALLVHQGLESALDEEDLEASTGSGIDDKRRQIQNRAHSTLI 66

Query: 3913 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 3734
            L L   I    S E +A  +W K+E L ++K L   L+LK+RL+ F M  G ++ DHI+ 
Sbjct: 67   LSLGDSILREISEEKTALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVTIQDHIDT 126

Query: 3733 FNKICSDLSNI-SVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVV 3557
            FNKI  DL  + +V I D DK+  LL SLP SY+ FVD +L G+T        L  +DV 
Sbjct: 127  FNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTT-------LTLEDVK 179

Query: 3556 SALQAKALRKQEFSDEAQVEGLFVDXXXXXXXXXXXXXXXXXSDIE----------CYYC 3407
            ++L +K ++K    + +  EGL                     + E          C+YC
Sbjct: 180  ASLSSKEIQKNCELETSNGEGLMARTEKKKDQKNKNQGKGHGKNQETADKKKKKRKCFYC 239

Query: 3406 RKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLN 3227
            RK GH   DC + K + E +EKS          + + A +D   G+    L V S S   
Sbjct: 240  RKEGHYIRDCFE-KKKKESQEKS---------GDAAVASDDGSDGYQSADLLVASNSNTK 289

Query: 3226 DGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH---GVITT 3056
              W++DSG S+H+CP K  F  Y  V+GG V+MGN+N C  VG+   + RS     ++ +
Sbjct: 290  GQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCK-RSRCLMELLRS 348

Query: 3055 LSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHGNLYFLRGDIV 2876
            L EVRH P L+++LISLG+L+SLGY + +  G L+V     + M G     LY L+G  V
Sbjct: 349  LHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSV 408

Query: 2875 CGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 2696
                 VS   +E   + T+LWH+RLGHMS KG+  LS +GLLGG++  +L+FCE+CIFGK
Sbjct: 409  PVQEGVSAVSEE---DRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGK 465

Query: 2695 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 2516
              RS F    H ++ +LDY H D WGP++  S  G R+F++ IDD+SR+VW+Y +K K++
Sbjct: 466  SHRSKFNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQ 525

Query: 2515 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 2336
              E FK WK++VE Q    +K +R+DNG E+     +E+C++ GI RH TV+ TPQQNG+
Sbjct: 526  ALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGL 585

Query: 2335 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2156
            AERMNRTL+++ RCML N+ L + +WAEAVNTA YLVNRSPS+AI  K+P E+W G   N
Sbjct: 586  AERMNRTLVDKTRCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPAN 645

Query: 2155 YSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNER 1976
            Y NLRVFGCPAY H+ + KL  RA K +F+GYP GVKGY++WC +  K I+SRDV F+E 
Sbjct: 646  YQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQGKCIVSRDVVFHES 705

Query: 1975 AMLDSKKSTDWDSQIXXXXXXXXXXXS----MQVEQRVPSSSTIXXXXXXXXXXXXXXXX 1808
             +L  K+S + D+ +           S    + VE     SS                  
Sbjct: 706  VLL--KESAEHDAGLQDNPAANKRSGSETSKVNVELLTDKSSEKEAASDDERATAESEEH 763

Query: 1807 XXXESTQQQIENIPSLTSQ--RERRPPTRYGFDEYASYAL----SVFEDEPFTFEEAMST 1646
               E  Q  ++N      +  RE R P RYG+ +  +YAL     V  +EP  F EAM +
Sbjct: 764  EVSELPQADLQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMES 823

Query: 1645 THAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYK 1466
             H  +W  AM +EM+SL +N TW L+  P  ++ I CKW++   +GIPD    V   +YK
Sbjct: 824  VHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPD----VEPPKYK 879

Query: 1465 ARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEED 1286
            ARLVA+G+ QREGVD+NE+FSPVVKH+SIR+LLA VA  DLELEQ+DVKTAFLHGNLEE 
Sbjct: 880  ARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQ 939

Query: 1285 IYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFK 1106
            I M+QP G+E   KEDYVC L KSLYGLKQSPRQWY+RFD FM+ + Y RS+YD CVYF 
Sbjct: 940  ILMAQPEGFECKDKEDYVCLLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFG 999

Query: 1105 KFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSK 926
                G   YLLLYVDDMLIA+K KSEI+ LK  L  EFEMKDLG AK+ILGM+I RDRS 
Sbjct: 1000 GSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSA 1059

Query: 925  GKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAV 746
            G L L+Q  Y++KVL RF M + K +  P+    KLS     TT+E+   M++ PYA AV
Sbjct: 1060 GTLFLSQGKYIKKVLERFEMQDCKPVQTPLGPQFKLS---AATTSEDESQMNEFPYAQAV 1116

Query: 745  GSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQS-- 572
            GSLMYAMVCTR D A AV +VSRY++ PG+ HW AVK I+RYL G+   GL++ K +S  
Sbjct: 1117 GSLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIMRYLKGSSTCGLLYGKTKSDK 1176

Query: 571  LKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVK 392
            ++V GFVDSD+AGD D+ +STS Y F L+   ISW+S LQ   ALS+TEAE+IA TEAVK
Sbjct: 1177 IEVMGFVDSDFAGDLDRRKSTSRYMFVLNSCLISWKSSLQSGGALSSTEAEFIATTEAVK 1236

Query: 391  EALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLV 212
            EA+WLRGL+ +L + Q+ V V CD+Q+AIHL KNQ+YH RTKHID++   +R+ V  G V
Sbjct: 1237 EAMWLRGLLNELWLNQKIVQVFCDNQNAIHLVKNQMYHERTKHIDVKLQFIRDEVGKGTV 1296

Query: 211  QLLKVDTEDNPADMLTKVVPKVKFERCLSLI 119
             + K+ T  NPAD LTK +P  KFE C++L+
Sbjct: 1297 VVSKIHTSVNPADALTKSLPTAKFEFCVNLM 1327


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score = 1140 bits (2949), Expect = 0.0
 Identities = 623/1355 (45%), Positives = 833/1355 (61%), Gaps = 30/1355 (2%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 3914
            FD+   N    F+ WQ  ++ IL                  +WT E+    D  A + I+
Sbjct: 3    FDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRK-DQKALALIQ 61

Query: 3913 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 3734
            L L  DI     +E ++  LW KLE + + KDLTS++ +K +L   +M    S++ H+ E
Sbjct: 62   LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121

Query: 3733 FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 3554
            F KI +DL ++ V   D D  ++LLCSLP SY  F D +L  +       D+L   +V  
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR-------DELTLKEVYD 174

Query: 3553 ALQAKALRK----QEFSDEAQVEGLFVDXXXXXXXXXXXXXXXXXSDIE--------CYY 3410
            ALQ K   K     + S  ++ E L V                              C Y
Sbjct: 175  ALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVY 234

Query: 3409 CRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYL 3230
            C+   H   +C K++A+ E++ K D K  VAS A   +   D +  F   V         
Sbjct: 235  CKLKNHNIDECKKVQAK-ERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG------- 286

Query: 3229 NDGWMLDSGASYHMCPSKDCFTTYREVNGGTVM-MGNSNACKTVGVGTVQVRSH-GVITT 3056
            +D W+LDS  S+H+C  ++ F++Y+ V  G V+ MG+ N C  VG+G+VQ+++  G+  T
Sbjct: 287  HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRT 346

Query: 3055 LSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHG-NLYFLRGDI 2879
            L  VR++P + ++LISL  L++ GYKY+   G LKV     + + G+ +   LY LRG  
Sbjct: 347  LKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCT 406

Query: 2878 VCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFG 2699
            + G    + ++   +   T LWHMRLGHMS  GM+ L  + LL G  + K+ FCEHCIFG
Sbjct: 407  LTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFG 466

Query: 2698 KQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKN 2519
            K  R  F T+VH T+G LDY+H+D+WGPS+  S GGAR+ +T IDD+SR+VW Y +KHK+
Sbjct: 467  KHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKD 526

Query: 2518 EVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNG 2339
            +    FK WK M+E+Q  R VK +R+DNGGE+      ++C ++GIVRH T+  TPQQNG
Sbjct: 527  DTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNG 586

Query: 2338 VAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLV 2159
            VAERMNRT++ RARCMLS+A ++K +WAEA +TACYL+NRSPS  +  K+P+EVW+G   
Sbjct: 587  VAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPA 646

Query: 2158 NYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNE 1979
            +YS L+VFGC AY HV   KL  RA K +FLGY  GVKGY+LW PE  K  +SR V FNE
Sbjct: 647  DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNE 706

Query: 1978 RAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXX 1799
              M  +   ++   +             MQVE     +                      
Sbjct: 707  SVMFTNSLPSEHVPE------KELQRMHMQVEHVDDYTGVQVEPVHEQDDHNNDVADDDA 760

Query: 1798 ESTQQQIENIPSLT---------SQRERRPPTRYGFD-EYASYALSVFED-----EPFTF 1664
                QQ   I  L          S+R  +PP R   +   + YALS  E      EP T+
Sbjct: 761  HDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATY 820

Query: 1663 EEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIV 1484
            +EA+    +  W +AM EEM+SL KN TWE+V LPK +K I CKW++  K+G+  S+   
Sbjct: 821  KEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEP-- 878

Query: 1483 SGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLH 1304
               +YKARLVA+GY+Q  GVDYN+VFSPVVKH+SIR  L+ VA  DLELEQLDVKTAFLH
Sbjct: 879  --PKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLH 936

Query: 1303 GNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYD 1124
            G LEEDIYM QP G+ V GKE YVC+L++SLYGLKQSPRQW KRFD+FML   + RSKYD
Sbjct: 937  GELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYD 996

Query: 1123 QCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEI 944
             CVY K    GS +YLLLYVDDMLIAAKSK EI  LKK LS EF+MKDLG AKKIL MEI
Sbjct: 997  SCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEI 1055

Query: 943  TRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKV 764
            +RDR  G L L+Q +Y++KVL+RF M N+KA+S PI    KLS   CP+T  E+E+MS+V
Sbjct: 1056 SRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRV 1115

Query: 763  PYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFE 584
            PY++AVGSLMYAMVC+RPD + A+ LVSRYM+NPG+ HW  V+ I RYL GT    L F 
Sbjct: 1116 PYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKFG 1175

Query: 583  KEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVT 404
            +     + G+VDSDYA D D+ RS +GY FT+    +SWR+ LQ +VALSTTEAEY+A+ 
Sbjct: 1176 RTDK-GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAIC 1234

Query: 403  EAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVD 224
            EA KE +WL+GL  +L  ++  + ++CDSQSAI+L K+Q++H RTKHIDI+YH VR+V++
Sbjct: 1235 EACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIE 1294

Query: 223  NGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 119
             G +++ K+ T DNPADM+TK +P  KFE C SL+
Sbjct: 1295 EGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLV 1329


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score = 1140 bits (2948), Expect = 0.0
 Identities = 619/1347 (45%), Positives = 854/1347 (63%), Gaps = 22/1347 (1%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQI-KAIKAKPATLPKDWTDEKWADLDLMACSTI 3917
            +D+   + K  F+ WQ  ++ +L     + +A+++       +WT E+    D  A S I
Sbjct: 6    YDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRK-DRKALSLI 64

Query: 3916 RLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHIN 3737
            +L LS DI      + +A  LW KLE + + KDLTS++++K +L + ++    S+++HI+
Sbjct: 65   QLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHIS 124

Query: 3736 EFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVV 3557
             F +I +DL ++ V   D D  ++LLCSLP SY  F   +L  +       D+L   +V 
Sbjct: 125  VFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSR-------DELTLAEVY 177

Query: 3556 SALQAKALRK---QEFSDEAQVEGLFV---------DXXXXXXXXXXXXXXXXXSDIECY 3413
             ALQ +   K   Q ++  ++ E L V         +                     C 
Sbjct: 178  EALQNREKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDHDKSQSRGRSKSRGKKFCK 237

Query: 3412 YCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSY 3233
            YC+K  H   +C KL+ ++++  KSD K  V + AE S++  D +  F   V +      
Sbjct: 238  YCKKKNHFIEECWKLQNKEKR--KSDGKASVVTSAENSDS-GDCLVVFAGYVAS------ 288

Query: 3232 LNDGWMLDSGASYHMCPSKDCFTTYREV-NGGTVMMGNSNACKTVGVGTVQVRSH-GVIT 3059
             +D W+LD+  S+H+C ++D F++Y+ V N   V MG+ N  + VG+G+VQ+++H G+  
Sbjct: 289  -HDEWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTR 347

Query: 3058 TLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHG-NLYFLRGD 2882
            TL +VRH+P + ++LISL  L++ GYKY+   G +KV     + M G+ +  NLY LRG 
Sbjct: 348  TLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGS 407

Query: 2881 IVCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIF 2702
             +  G++ + ++ + +   T LWHMRLGHMSE GM+ L  + LL G     + FCEHC+F
Sbjct: 408  TL-HGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVF 466

Query: 2701 GKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHK 2522
            GK  R  F T+VH T+G+LDY+H+D+WGPSR  S GGAR+ +T IDD+SR+ W Y +KHK
Sbjct: 467  GKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHK 526

Query: 2521 NEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQN 2342
            ++    FK+ K M+E+Q  + VK + +DNGGE+  D   ++C ++GIVRH T+  TPQQN
Sbjct: 527  DDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQN 586

Query: 2341 GVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNL 2162
            GVAERMNRT++ +ARCMLSNA ++K +WAEA NTACYL+NRSPS  +  K+P+E+W+G  
Sbjct: 587  GVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMP 646

Query: 2161 VNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFN 1982
             +YS LRVFGC AY HV   KL  RA K +FLGY  GVKGY+LW PE NK  +SR+V FN
Sbjct: 647  ADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRNVIFN 706

Query: 1981 ERAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXX 1802
            E  M +    TD    I           S+QVE      + I                  
Sbjct: 707  EFVMFNDSLPTD---VIPGGSDEEQQYVSVQVEHVDDQETEIVGNDVNDTVQHSPSVL-- 761

Query: 1801 XESTQQQIENIPSLTSQRERRPPTRYGFD-EYASYALSVFED-----EPFTFEEAMSTTH 1640
                Q Q E I    ++R    P R   + +   YA S  E      EP T+ EA+ +  
Sbjct: 762  ----QPQDEPIAHRRTKRSCGAPVRLIEECDMVYYAFSYAEQVENTLEPATYTEAVVSGD 817

Query: 1639 AIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYKAR 1460
              +W +A+ EEM+SL KN TWELV LPK +K + CKW++  K+G+  S+      R+K R
Sbjct: 818  REKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEP----PRFKVR 873

Query: 1459 LVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIY 1280
            LVAKG++Q  GVDYN+VFSPVVKH+SIR   + V   DLELEQLDVKT FLHG LEE+IY
Sbjct: 874  LVAKGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIY 933

Query: 1279 MSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKF 1100
            M QP G+ V GKEDYVC+L++SLYGLKQSPRQWYKRFD+FML   + RS++D CVY K F
Sbjct: 934  MDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIK-F 992

Query: 1099 PGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGK 920
              GS +YLLLYVDDMLIAAKSK +I  LKKQLS EF+MKDLG AKKILGMEITRDR+ G 
Sbjct: 993  VNGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGL 1052

Query: 919  LCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGS 740
            L L+Q+SY++KVL+RF MH++K +S PI    KLS   C +T E++E+MS+VPY++AVGS
Sbjct: 1053 LFLSQQSYIKKVLQRFNMHDAKPVSTPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGS 1112

Query: 739  LMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVC 560
            LMYAMVC+ PD + A+ LVSRYMANPG+ HW AV+ I RYL GT D  L F +     + 
Sbjct: 1113 LMYAMVCSWPDLSHAMSLVSRYMANPGKEHWKAVQWIFRYLRGTADACLKFGRIDK-GLV 1171

Query: 559  GFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALW 380
            G+VDSD+A D DK RS +GY FT+    +SW++ LQP+VA STTEAEY+A+ EA KE++W
Sbjct: 1172 GYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTEAEYMAIAEACKESVW 1231

Query: 379  LRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLK 200
            L+GL  +L  +   + + CDSQSAI L K+Q++H RTKHIDI+YH VR++V  G +++ K
Sbjct: 1232 LKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDIVAQGKLKVCK 1291

Query: 199  VDTEDNPADMLTKVVPKVKFERCLSLI 119
            +   DNPADM+TK +P  KFE C SL+
Sbjct: 1292 ISIHDNPADMMTKPIPVAKFELCSSLV 1318


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score = 1138 bits (2944), Expect = 0.0
 Identities = 623/1355 (45%), Positives = 834/1355 (61%), Gaps = 30/1355 (2%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 3914
            FD+   N    F+ WQ +++ IL                  +WT E+    D  A + I+
Sbjct: 5    FDLPLLNYDTRFSLWQVNMRGILAQTHDYDEALDNFGKRRAEWTAEEIRK-DQKALALIQ 63

Query: 3913 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 3734
            L L  DI     +E ++  LW KLE + + KDLTS++ +K +L   +M    S++ HI E
Sbjct: 64   LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHIAE 123

Query: 3733 FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 3554
            F KI +DL ++ V   D D  ++LLCSLP SY  F D +L  +       D+L   +V  
Sbjct: 124  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR-------DELTLKEVYD 176

Query: 3553 ALQAKALRK----QEFSDEAQVEGLFVDXXXXXXXXXXXXXXXXXSDIE--------CYY 3410
            ALQ K   K     + S  ++ E L V                              C Y
Sbjct: 177  ALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENKTSNEKNYDRRGRSKSKPPGNKKFCVY 236

Query: 3409 CRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYL 3230
            C+   H   +C K++A+ E++ K D K  VAS A   +   D +  F   V         
Sbjct: 237  CKLKNHNIDECKKVQAK-ERKNKKDGKVSVASAAVSDDDSGDCLVVFAGCVAG------- 288

Query: 3229 NDGWMLDSGASYHMCPSKDCFTTYREVNGGTVM-MGNSNACKTVGVGTVQVRSH-GVITT 3056
            +D W+LDS  S+H+C  ++ F++Y+ V  G V+ MG+ N C  VG+G+VQ+++  G+  T
Sbjct: 289  HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRT 348

Query: 3055 LSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHG-NLYFLRGDI 2879
            L  VR++P + ++LISL  L++ GYKY+   G LKV     + + G+ +   LY LRG  
Sbjct: 349  LKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCT 408

Query: 2878 VCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFG 2699
            + G    + ++   +   T LWHMRLGHMS  GM+ L  + LL G  + K+ FCEHCIFG
Sbjct: 409  LPGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFG 468

Query: 2698 KQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKN 2519
            K  R  F T+VH T+G LDY+H+D+WGPS+  S GGAR+ +T IDD+SR+VW Y +KHK+
Sbjct: 469  KHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKD 528

Query: 2518 EVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNG 2339
            +    FK WK M+E+Q  R VK + +DNGGE+      ++C ++GIVRH T+  TPQQNG
Sbjct: 529  DTFTAFKNWKVMIERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNG 588

Query: 2338 VAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLV 2159
            VAERMNRT++ RARCMLS+A ++K +WAEA +TACYL+NRSPS  +  K+P+EVW+G   
Sbjct: 589  VAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPA 648

Query: 2158 NYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNE 1979
            +YS L+VFGC AY HV   KL  RA K +FLGY  GVKGY+LW PE  K  +SR V FNE
Sbjct: 649  DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNE 708

Query: 1978 RAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXX 1799
              M  +   ++   +             MQVE     +                      
Sbjct: 709  SVMFTNSLPSEHVPE------KELQRMHMQVEHVDDDTGVQVEPVDEQDDHNNDVADDDA 762

Query: 1798 ESTQQQIENIPSLT---------SQRERRPPTRYGFD-EYASYALSVFED-----EPFTF 1664
                QQ   I  L          S+R  +PP R   +   + YALS  E      EP T+
Sbjct: 763  HDDVQQTPPILQLEEDLSIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATY 822

Query: 1663 EEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIV 1484
            +EA+    +  W +AM EEM+SL KN TWE+V LPK +K I CKW++  K+ +  S+   
Sbjct: 823  KEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEP-- 880

Query: 1483 SGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLH 1304
               +YKARLVA+GY+Q  GVDYN+VFSPVVKH+SIR  L+ VA  DLELEQLDVKTAFLH
Sbjct: 881  --PKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLH 938

Query: 1303 GNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYD 1124
            G LEEDIYM QP G+ V GKE YVC+L++SLYGLKQSPRQW KRFD+FML   + RSKYD
Sbjct: 939  GELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYD 998

Query: 1123 QCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEI 944
             CVY K    GS +YLLLYVDDMLIAAKSK EI  LKK LS EF+MKDLG AKKILGMEI
Sbjct: 999  SCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEI 1057

Query: 943  TRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKV 764
            +RDR  G L L+Q +Y++KVL+RF M N+KA+S PI    KLS   CP+T  E+E+MS+V
Sbjct: 1058 SRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRV 1117

Query: 763  PYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFE 584
            PY++AVGSLMYAMVC+RPD + A+ LVSRYM+NPG+ HW A++ I RYL GT    L F 
Sbjct: 1118 PYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFG 1177

Query: 583  KEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVT 404
            +     + G+VDSDYA D D+ RS +GY FT+    +SWR+ LQ +VALSTTEAEY+A+ 
Sbjct: 1178 RTDK-GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAIC 1236

Query: 403  EAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVD 224
            EA KE +WL+GL  +L  ++  + ++CDSQSAI+L K+Q++H RTKHIDI+YH VR+V++
Sbjct: 1237 EACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIE 1296

Query: 223  NGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 119
             G +++ K+ T DNPADM+TK +P  KFE C SL+
Sbjct: 1297 EGKLKVCKICTHDNPADMMTKPIPVAKFELCSSLV 1331


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 1137 bits (2941), Expect = 0.0
 Identities = 614/1341 (45%), Positives = 840/1341 (62%), Gaps = 18/1341 (1%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 3914
            F+I KFNG+N F+ W+  ++ IL     + AI  + A    D TDEKW ++D  A + + 
Sbjct: 5    FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRLA----DITDEKWKEMDDNAVANLH 59

Query: 3913 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 3734
            L ++  +  + + + +AK +W+ L KLY  K L + ++LKRRL+  +M    S+ DHIN 
Sbjct: 60   LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLQMGESTSVTDHINT 119

Query: 3733 FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 3554
             N + S L+     I+  +++ +LL SLP SYD  +  + +         D L FDDV  
Sbjct: 120  LNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLIINITNNNI-----ADTLHFDDVAG 174

Query: 3553 AL---QAKALRKQEFSDEAQ-------VEGLFVDXXXXXXXXXXXXXXXXXSDIECYYCR 3404
            A+   +++   K+E S+ ++         G   +                  +I+CY C 
Sbjct: 175  AILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCG 234

Query: 3403 KPGHIRADCLKLKARDEKR-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLN 3227
              GH++ +C  +K   EK  E S S+  VAS ++  E L      + E   +   +  LN
Sbjct: 235  MKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEIL------YSEAATSSKGERRLN 288

Query: 3226 DGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLS 3050
            D W++DSGA++HM P +D F +Y  ++ G+V MGN +A +  GVGT++++ H G +  + 
Sbjct: 289  DVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 3049 EVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVC 2873
             VRHV  L+K+L+S+G L+ LG K   E G LKV     + M  E+   NLY L GD + 
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 2872 -GGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 2696
               A V+ +  E   E+T +WH RLGHMSE+G+ VL  + LL G KT  L FCEHC+  K
Sbjct: 409  EADASVAAASQE---ETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSK 465

Query: 2695 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 2516
            Q R  F      ++ +LD IHSDVW  S  +S GGAR+FV+FIDD+SRR+W+Y +K K++
Sbjct: 466  QHRLKFARVTTRSKHILDLIHSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSD 524

Query: 2515 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 2336
            V  VFK +K  +E +  + +K +R+DNGGEY++     FC+++GIVR FTV  TPQQNGV
Sbjct: 525  VFPVFKAFKAQIELETEKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 2335 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2156
            AERMNRTLLER R ML  A + K +WAEA  TACY++NRSPSTAI  K+PME+W G  V+
Sbjct: 585  AERMNRTLLERTRAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPVD 644

Query: 2155 YSNLRVFGCPAYFHV---KEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 1985
            YS+L VFGCP Y      ++ KL  +++K IFLGY   VKGYRLW P   K ++SRDV F
Sbjct: 645  YSSLHVFGCPVYVMYNSQEKTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVF 704

Query: 1984 NERAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 1805
             E  +   +K+     +             +Q+E++   S +                  
Sbjct: 705  AENELQSEQKNDSTSKETAI----------VQMEEKSKESDSSEAESVHEEQEPDDVNDG 754

Query: 1804 XXESTQQQIENIPSLTSQRERRPPTRYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWK 1625
               ST+Q  +  PS  S         Y    + +Y L   E EP TF EA++ + A +W 
Sbjct: 755  VRRSTRQTQK--PSWQSD--------YVMTSHDAYCLITEEGEPSTFHEALNGSDASQWM 804

Query: 1624 TAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLVAK 1448
            TAM EEM++LH+N TWELV+LPKGRK IG KWVY +K DG    +      RY+ARLV K
Sbjct: 805  TAMHEEMEALHRNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVE------RYRARLVVK 858

Query: 1447 GYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQP 1268
            GYAQ+EG+D+NE+FSPVV+ T+IRV+LA  A  DL LEQLDVKTAFLHG LEE+IYM QP
Sbjct: 859  GYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQP 918

Query: 1267 IGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGS 1088
             G++  GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++   Y R   D C Y+K+F G  
Sbjct: 919  EGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGND 978

Query: 1087 FVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLT 908
            F+ LLLYVDDML+   +K  +  LK QL+ EF+MKDLGPA KILGM+I RDR   K+ L+
Sbjct: 979  FIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLS 1038

Query: 907  QKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYA 728
            QK+YL KVLRRF M + K IS P+P   KLS  + P+   E   MS+VPYA+AVGSLMYA
Sbjct: 1039 QKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYA 1098

Query: 727  MVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVD 548
            M+CTRPD AQAVG+VSR+MA+PG+ HW AVK I+RY+ GT  + + F   + L V G+VD
Sbjct: 1099 MICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE-LTVWGYVD 1157

Query: 547  SDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGL 368
            SD+AGD DK +ST+GY FTL+G  +SW S LQ +VALSTTEAEY+A T+A KEA+W++ L
Sbjct: 1158 SDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRL 1217

Query: 367  VKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTE 188
            +++LG  Q  + V CDSQSA+H+A+N  +H+RTKHI ++YH VREVV+ G V + K+ T 
Sbjct: 1218 MEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTN 1277

Query: 187  DNPADMLTKVVPKVKFERCLS 125
            DN AD++TK +   KF  C S
Sbjct: 1278 DNLADVMTKPINTDKFVWCRS 1298


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score = 1136 bits (2938), Expect = 0.0
 Identities = 623/1355 (45%), Positives = 832/1355 (61%), Gaps = 30/1355 (2%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 3914
            FD+   N    F+  Q  ++ IL                  +WT E+    D  A + I+
Sbjct: 3    FDLPLLNYDTRFSLRQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRK-DQKALALIQ 61

Query: 3913 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 3734
            L L  DI      E ++  LW KLE + + KDLTS++ +K +L   +M    S++ H+ E
Sbjct: 62   LHLHNDILQECLIEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121

Query: 3733 FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 3554
            F KI +DL ++ V   D D  ++LLCSLP SY  F D +L  +       D+L   +V  
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR-------DELTLKEVYD 174

Query: 3553 ALQAKALRK----QEFSDEAQVEGLFVDXXXXXXXXXXXXXXXXXSDIE--------CYY 3410
            ALQ K   K     + S  ++ E L V                              C Y
Sbjct: 175  ALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVY 234

Query: 3409 CRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYL 3230
            C+   H   +C K++A+ E++ K D K  VAS A   +   D +  F   V         
Sbjct: 235  CKLKNHNIDECKKVQAK-ERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG------- 286

Query: 3229 NDGWMLDSGASYHMCPSKDCFTTYREVNGGTVM-MGNSNACKTVGVGTVQVRSH-GVITT 3056
            +D W+LDS  S+H+C  ++ F++Y+ V  G V+ MG+ N C  VG+G+VQ+++  G+  T
Sbjct: 287  HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRT 346

Query: 3055 LSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHG-NLYFLRGDI 2879
            L  VR++P + ++LISL  L++ GYKY+   G LKV     + + G+ +   LY LRG  
Sbjct: 347  LKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCT 406

Query: 2878 VCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFG 2699
            + G    + ++   +   T LWHMRLGHMS  GM+ L  + LL G  + K+ FCEHCIFG
Sbjct: 407  LTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFG 466

Query: 2698 KQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKN 2519
            K  R  F T+VH T+G LDY+H+D+WGPS+  S GGAR+ +T IDD+SR+VW Y +KHK+
Sbjct: 467  KHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKD 526

Query: 2518 EVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNG 2339
            +    FK WK M+E+Q  R VK +R+DNGGE+      ++C ++GIVRH T+  TPQQNG
Sbjct: 527  DTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNG 586

Query: 2338 VAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLV 2159
            VAERMNRT++ RARCMLS+A ++K +WAEA +TACYL+NRSPS  +  K+P+EVW+G   
Sbjct: 587  VAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPA 646

Query: 2158 NYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNE 1979
            +YS L+VFGC AY HV   KL  RA K +FLGY  GVKGY+LW PE  K  +SR V FNE
Sbjct: 647  DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNE 706

Query: 1978 RAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXX 1799
              M  +   ++   +             MQVE     +                      
Sbjct: 707  SVMFTNSLPSEHVPE------KELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDA 760

Query: 1798 ESTQQQIENIPSLT---------SQRERRPPTRYGFD-EYASYALSVFED-----EPFTF 1664
                QQ   I  L          S+R  +PP R   +   + YALS  E      EP T+
Sbjct: 761  HDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATY 820

Query: 1663 EEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIV 1484
            +EA+    +  W +AM EEM+SL KN TWE+V LPK +K I CKW++  K+G+  S+   
Sbjct: 821  KEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEP-- 878

Query: 1483 SGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLH 1304
               +YKARLVA+GY+Q  GVDYN+VFSPVVKH+SIR  L+ VA  DLELEQLDVKTAFLH
Sbjct: 879  --PKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLH 936

Query: 1303 GNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYD 1124
            G LEEDIYM QP G+ V GKE YVC+L++SLYGLKQSPRQW KRFD+FML   + RSKYD
Sbjct: 937  GELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYD 996

Query: 1123 QCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEI 944
             CVY K    GS +YLLLYVDDMLIAAKSK EI  LKK LS EF+MKDLG AKKILGMEI
Sbjct: 997  SCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEI 1055

Query: 943  TRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKV 764
            +RDR  G L L+Q +Y++KVL+RF M N+KA+S PI    KLS   CP+   E+E+MS+V
Sbjct: 1056 SRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRV 1115

Query: 763  PYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFE 584
            PY++AVGSLMYAMVC+RPD + A+ LVSRYM+NPG+ HW AV+ I RYL GT    L F 
Sbjct: 1116 PYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFG 1175

Query: 583  KEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVT 404
            +     + G+VDSDYA D D+ RS +GY FT+    +SWR+ LQ +VALSTTEAEY+A+ 
Sbjct: 1176 RTDK-GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAIC 1234

Query: 403  EAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVD 224
            EA KE +WL+GL  +L  ++  + ++CDSQSAI+L K+Q++H RTKHIDI+YH VR+V++
Sbjct: 1235 EACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIE 1294

Query: 223  NGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 119
             G +++ K+ T DNPADM+TK +P  KFE C SL+
Sbjct: 1295 EGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLV 1329


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 1135 bits (2935), Expect = 0.0
 Identities = 613/1341 (45%), Positives = 840/1341 (62%), Gaps = 18/1341 (1%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 3914
            F+I KFNG+  F+ W+  ++ IL     + AI  +PA    D TDEKW ++D  A + + 
Sbjct: 5    FEIEKFNGRK-FSLWKLKIRAILRKDNCLDAIDGRPA----DITDEKWKEMDDNAVANLH 59

Query: 3913 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 3734
            L ++  +  + + + +AK +W+ L KLY  K L + ++LKRRL+  RM    S+ DHIN 
Sbjct: 60   LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINT 119

Query: 3733 FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 3554
             N + S L+     I++ +++ +LL SLP SYD  +  + +         D L FDDV  
Sbjct: 120  LNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNI-----ADTLHFDDVAG 174

Query: 3553 AL---QAKALRKQEFSDEAQ-------VEGLFVDXXXXXXXXXXXXXXXXXSDIECYYCR 3404
            A+   +++   K+E S+ ++         G   +                 ++I+CY C 
Sbjct: 175  AILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKNNIKCYGCG 234

Query: 3403 KPGHIRADCLKLKARDEKR-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLN 3227
              GH++ +C   K   EK  E + S+  VAS ++  E L      + E   +   +  LN
Sbjct: 235  MKGHVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEIL------YSEAATSSEGERQLN 288

Query: 3226 DGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLS 3050
            D W++DSGA++HM P +D F +Y  ++ G+V MGN +A +  GVGT++++ H G +  + 
Sbjct: 289  DVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 3049 EVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVC 2873
             VRHV  L+K+L+S+G L+ LG K  +E G LKV     + M  E+   NLY L GD + 
Sbjct: 349  GVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQ 408

Query: 2872 -GGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 2696
               A V+ +  E   E+T +WH RLGHMSE+G+ VL  + LL G KT  L FCEHC+  K
Sbjct: 409  EADASVAAASQE---ETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISK 465

Query: 2695 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 2516
            Q R  F      ++ +LD IHSDVW  S  +S GGAR+FV+FIDD+SRR+W+Y +K K++
Sbjct: 466  QHRLKFARVTTRSKHILDLIHSDVW-ESPKLSLGGARYFVSFIDDYSRRLWVYPIKKKSD 524

Query: 2515 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 2336
            V  VFK +K  +E + G+ +K +R+DNGGEY++     FC+++GIVR FTV  TPQQNGV
Sbjct: 525  VFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGV 584

Query: 2335 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2156
            AERMNRTLLER R ML  A + K +WAEAV TACY++NRSPST I  K+PME+W G  V+
Sbjct: 585  AERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVINRSPSTTIDLKTPMEMWKGKPVD 644

Query: 2155 YSNLRVFGCPAYFHVKED---KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 1985
            YS+L VFGCP Y         KL  +++K IFLGY   VKGYRLW P   K ++SRDV F
Sbjct: 645  YSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVF 704

Query: 1984 NERAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 1805
             E  +   +K+     +             +Q+E++   S +                  
Sbjct: 705  AENELQSEQKNDSTFKETAI----------LQIEEKSKESDSSEAESVHEEQEPDDVNNG 754

Query: 1804 XXESTQQQIENIPSLTSQRERRPPTRYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWK 1625
               ST+Q  +  PS  S         Y    + +Y L   E EP TF EA++ + A +W 
Sbjct: 755  VRRSTRQTQK--PSWQSD--------YVMTGHDAYCLIAEEGEPSTFHEALNGSDASQWM 804

Query: 1624 TAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLVAK 1448
            TA+ EEM++L KN TWELV+LPKGRK IG KWVY +K DG    +      RY+ARLV K
Sbjct: 805  TAIHEEMEALRKNKTWELVELPKGRKAIGNKWVYKIKRDGNDQVE------RYRARLVVK 858

Query: 1447 GYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQP 1268
            GYAQ+EG+D+NE+FSPVV+ T+IRV+LA  A  DL LEQLDVKTAFLHG LEE+IYM QP
Sbjct: 859  GYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQP 918

Query: 1267 IGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGS 1088
             G++  GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++   Y R   D C Y+K+F G  
Sbjct: 919  EGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGND 978

Query: 1087 FVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLT 908
            F+ LLLYVDD+L+   +K  +  LK QL+ EF+MKDLGPA KILGM+I RDR   K+ L+
Sbjct: 979  FIILLLYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLS 1038

Query: 907  QKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYA 728
            QK+YL KVLRRF M + K IS P+P   KLS  + P+   E   MS+VPYA+AVGSLMYA
Sbjct: 1039 QKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYA 1098

Query: 727  MVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVD 548
            M+CTRPD AQAVG+VSR+MA+PG+ HW AVK I+RY+ GT  + + F   + L V G+VD
Sbjct: 1099 MICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCFGGSE-LTVRGYVD 1157

Query: 547  SDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGL 368
            SD+AGD DK +ST+GY FTL+G  +SW S LQ +VALSTTEAEY+A T+A KEA+W++ L
Sbjct: 1158 SDFAGDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRL 1217

Query: 367  VKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTE 188
            +++LG  Q  + V CDSQSA+H+A+N  +H+RTKHI ++YH VREVV+ G V + K+ T 
Sbjct: 1218 MEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTN 1277

Query: 187  DNPADMLTKVVPKVKFERCLS 125
            DN AD++TK +   KF  C S
Sbjct: 1278 DNLADVMTKPINADKFVWCRS 1298


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score = 1134 bits (2934), Expect = 0.0
 Identities = 617/1341 (46%), Positives = 855/1341 (63%), Gaps = 23/1341 (1%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 3914
            ++I KFNG NNF+ W+  +K +L     + AI  +P  +    TD+KW ++D  A S + 
Sbjct: 5    YEIEKFNG-NNFSLWKMKMKAVLRKNNCLAAIGERPMEI----TDDKWNEVDGNAISDLH 59

Query: 3913 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 3734
            L L+  +  + + + +AK +W+ L KLY  K L ++++LKR+L+  RM+    + DHIN 
Sbjct: 60   LALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHINT 119

Query: 3733 FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVV- 3557
               + S L+ +   I + +++ +LL SLP SYD  +  L +    E      LVFDDV  
Sbjct: 120  LKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVES-----LVFDDVAA 174

Query: 3556 SALQAKALRKQEFSDEA---QVEGLFV------DXXXXXXXXXXXXXXXXXSDIECYYCR 3404
            S L  ++ RK + + +A   Q E L V      +                  +++CY C 
Sbjct: 175  SVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNQGRSKFRGKKNVKCYNCG 234

Query: 3403 KPGHIRADCLKLKARDEKREK--SDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYL 3230
            K GH++ +C   + R E +E   S+++  VAS ++  E L      + E       +  L
Sbjct: 235  KKGHVKKECWSNQKRREGKEPETSNAQGCVASTSDDGEIL------YSEATTVSEGRKRL 288

Query: 3229 NDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTL 3053
            +D W++DSGA++HM   ++ F TY  ++GG+V MGN +A +  G+GT++++   G I T+
Sbjct: 289  SDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTI 348

Query: 3052 SEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERHG-NLYFLRGDIV 2876
             EVRHV  L+K+L+SLG ++S GYK   E G +K+     + M  E+ G NL+ L+G+ +
Sbjct: 349  GEVRHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMKVEKIGANLFMLKGETL 408

Query: 2875 CGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 2696
                    S  E   EST +WH++LGHMSE+G+ +LS + LL G K+  L FCEHC+  K
Sbjct: 409  QEADACVASNGE---ESTMMWHLKLGHMSEQGLKILSERKLLPGLKSVSLPFCEHCVTSK 465

Query: 2695 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 2516
            Q R  F  ++  ++ +LD IHSDVW  S  +S GGA++ VTFIDD+SRR W+Y +K K++
Sbjct: 466  QHRLKFSRSIARSKCILDLIHSDVW-ESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSD 524

Query: 2515 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 2336
            V  VFK++K  VE + G+ +K +R+DNGGEY +     FC+++GI R FTV  TPQQNGV
Sbjct: 525  VFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDGEFLAFCKQEGIQRQFTVAYTPQQNGV 584

Query: 2335 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2156
            AERMNRTL ER R ML  A L   +WAEA  TACY+VNRSPSTAI  K+ ME+WTG   +
Sbjct: 585  AERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPAD 644

Query: 2155 YSNLRVFGCPAY--FHVKE-DKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 1985
            YS L  FGCP Y  ++ +E  KL  ++++ IFLGY  GVKGYRLW P  +K +ISRDV F
Sbjct: 645  YSYLHAFGCPMYVMYNAQERTKLDAKSRRCIFLGYADGVKGYRLWDPTAHKIVISRDVIF 704

Query: 1984 NERAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 1805
             E    D  +  D D                 V+++   S T+                 
Sbjct: 705  VE----DQLQRKDGDDGT--------------VKEK---SETVPVYVENNPENSDSSEAA 743

Query: 1804 XXESTQQQIEN-IPSLT-SQRERRPPT---RYGFDEYASYALSVFEDEPFTFEEAMSTTH 1640
                 Q+ +E+  P +  S RERRPPT    Y  +   +Y L   + EP TF EA++++ 
Sbjct: 744  PEHEEQEPVESEAPEVRRSTRERRPPTWHSEYVTEINVAYCLLTEDGEPSTFHEALNSSD 803

Query: 1639 AIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKA 1463
               W TAM EE+++LHKN TWELV LP+GRK IG KWVY +K DG    +      RY+A
Sbjct: 804  VALWMTAMQEEIEALHKNKTWELVPLPRGRKAIGNKWVYKIKRDGNDQVE------RYRA 857

Query: 1462 RLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDI 1283
            RLV KGYAQ+EG+D+NE+FSPVV+ T++R++LA  A FDL LEQLDVKTAFLHG LEE+I
Sbjct: 858  RLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEI 917

Query: 1282 YMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKK 1103
            YM QP G+   GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++   Y R   D C Y+K+
Sbjct: 918  YMLQPEGFAETGKENLVCRLNKSLYGLKQAPRYWYKRFDSFIMSLGYNRLSSDHCAYYKR 977

Query: 1102 FPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKG 923
            F    F+ LLLYVDDML+A  +K  I  LK QL+ EFEMKDLGPA KILGM+I RDR+  
Sbjct: 978  FEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNM 1037

Query: 922  KLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVG 743
            K+ L+QK+YL+K+LRRF M + K+IS  +P   KLS  +CP+   E + MS+VPYA+AVG
Sbjct: 1038 KIWLSQKNYLKKILRRFNMQDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVG 1097

Query: 742  SLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKV 563
            SLM+AM+CTRPD AQAVG+VSRYMANPG  HW AVK ILRY+ GT D+ L +   +   V
Sbjct: 1098 SLMFAMICTRPDIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVALCYGGSE-FTV 1156

Query: 562  CGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEAL 383
             G+VDSD+AGD DK +ST+GY FTL+GA +SW S LQ +VALSTTEAEY+A T+A K+A+
Sbjct: 1157 RGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKKAI 1216

Query: 382  WLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLL 203
            W++ L+++LG  Q+ ++V CDSQSA+H+A+N  +H+RTKHI ++YH VREVV++G V L 
Sbjct: 1217 WIQRLLEELGHKQQKILVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQ 1276

Query: 202  KVDTEDNPADMLTKVVPKVKF 140
            K+ T++N AD+LTK +   KF
Sbjct: 1277 KIHTKENLADVLTKPINTDKF 1297


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score = 1130 bits (2922), Expect = 0.0
 Identities = 616/1341 (45%), Positives = 850/1341 (63%), Gaps = 23/1341 (1%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 3914
            ++I KFNG NNF+ W+  +K +L     + AI  +P  +    TD+KW ++D  A S + 
Sbjct: 5    YEIEKFNG-NNFSLWKMKMKAVLRKNNCLAAIGERPMEI----TDDKWNEVDSNAISDLH 59

Query: 3913 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 3734
            L L+  +  + + + +AK +W+ L KLY  K L ++++LKR+L+  RM+    + DHIN 
Sbjct: 60   LALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHINT 119

Query: 3733 FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVV- 3557
               + S L+ +   I + +++ +LL SLP SYD  +  L +         D LVFDDV  
Sbjct: 120  LKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNP-----VDSLVFDDVAA 174

Query: 3556 SALQAKALRKQEFSDEA---QVEGLFV------DXXXXXXXXXXXXXXXXXSDIECYYCR 3404
            S L  ++ RK + + +A   Q E L V      +                  +++CY C 
Sbjct: 175  SVLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNHGRSKSRSKKNVKCYNCG 234

Query: 3403 KPGHIRADCLKLKARDEKRE--KSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYL 3230
            K GH++ +C   + R E +E   S+++  VAS ++  E L      + E  +    +  L
Sbjct: 235  KKGHVKKECWSNQKRREGKEPESSNAQGCVASTSDDGEIL------YSEATIVSEGRKRL 288

Query: 3229 NDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTL 3053
            +D W++DSGA++HM   ++ F TY  ++GG+V MGN +A +  G+GT++++   G I T+
Sbjct: 289  SDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHALEIAGIGTIKIKMFDGTIRTI 348

Query: 3052 SEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGERH-GNLYFLRGDIV 2876
             EVRHV  L+K+L+SLG ++S G K   E G +K+     + M  E+   NL+ L+G+ +
Sbjct: 349  EEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAEKICANLFMLKGETL 408

Query: 2875 CGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 2696
                    S  E   EST +WH++LGHMSE+G+ +LS + L  G K+  L FCEHC+  K
Sbjct: 409  QEADACVASNGE---ESTMMWHLKLGHMSEQGLKILSERKLPPGLKSVSLPFCEHCVTSK 465

Query: 2695 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 2516
            Q R  F  ++  ++ +LD IHSDVW  S  +S GGA++ VTFIDD+SRR W+Y +K K++
Sbjct: 466  QHRLKFSRSIARSKCILDLIHSDVW-ESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSD 524

Query: 2515 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 2336
            V  VFK++K  VE + G+ +K +R+DNGGEY +     FC+++GI R FTV  TPQQNGV
Sbjct: 525  VFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDSEFLAFCKQEGIQRQFTVAYTPQQNGV 584

Query: 2335 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2156
            AERMNRTL ER R ML  A L   +WAEA  TACY+VNRSPSTAI  K+ ME+WTG   +
Sbjct: 585  AERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPAD 644

Query: 2155 YSNLRVFGCPAY--FHVKE-DKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 1985
            YS L  FGCP Y  ++ +E  KL  +++K IFLGY  GVKGYRLW P  +K +ISRDV F
Sbjct: 645  YSYLHAFGCPVYVMYNAQERTKLDPKSRKCIFLGYADGVKGYRLWDPTAHKIVISRDVIF 704

Query: 1984 NERAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 1805
             E    D  +  D D                 V+++   S T+                 
Sbjct: 705  VE----DQLQRKDGDDGT--------------VKEK---SETVPVYVENNPENSDSSEAA 743

Query: 1804 XXESTQQQIEN-IPSLT-SQRERRPPT---RYGFDEYASYALSVFEDEPFTFEEAMSTTH 1640
                 Q+ +E+  P +  S RERRPPT    Y  +   +Y L   + EP TF EA+++  
Sbjct: 744  PEHEEQEPVESEAPEVRRSTRERRPPTWHSEYVTEINVAYCLLTEDGEPSTFHEALNSLD 803

Query: 1639 AIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKA 1463
               W TAM EE+++LHKN TWELV LP GRK IG KWVY +K DG    +      RY+A
Sbjct: 804  VALWMTAMQEEIEALHKNKTWELVPLPHGRKAIGNKWVYKIKRDGNDQVE------RYRA 857

Query: 1462 RLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDI 1283
            RLV KGYAQ+EG+D+NE+FSPVV+ T++R++LA  A FDL LEQLDVKTAFLHG LEE+I
Sbjct: 858  RLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEI 917

Query: 1282 YMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKK 1103
            YM QP G+   GKE+ VCRL KSLYGLKQ+PR WYKRFD+F++   Y R   D C Y+K+
Sbjct: 918  YMLQPEGFAETGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCAYYKR 977

Query: 1102 FPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKG 923
            F    F+ LLLYVDDML+A  +K  I  LK QL+ EFEMKDLGPA KILGM+I RDR+  
Sbjct: 978  FEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRDRNNR 1037

Query: 922  KLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVG 743
            K+ L+QK+YL+K+LRRF M + K+IS P+P   KLS  +CP+   E + MS+VPYA+AVG
Sbjct: 1038 KIWLSQKNYLKKILRRFNMQDCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYASAVG 1097

Query: 742  SLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKV 563
            SLM+AM+CTRPD AQAVG VSRYMANPG  HW AVK ILRY+ GT ++ L +   +   V
Sbjct: 1098 SLMFAMICTRPDIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTSNVALCYGGSE-FTV 1156

Query: 562  CGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEAL 383
             G+VDSD+AGD DK +ST+GY FTL+GA +SW S LQ +VALSTTEAEY+A T+A KEA+
Sbjct: 1157 RGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKEAI 1216

Query: 382  WLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLL 203
            W++ L+++LG  Q+ + V CDSQSA+H+A+N  +H+RTKHI ++YH VREVV++G V L 
Sbjct: 1217 WIQRLLEELGHKQQKIPVFCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQ 1276

Query: 202  KVDTEDNPADMLTKVVPKVKF 140
            K+ T++N AD+LTK +   KF
Sbjct: 1277 KIHTKENLADVLTKSINTDKF 1297


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score = 1127 bits (2916), Expect = 0.0
 Identities = 613/1343 (45%), Positives = 841/1343 (62%), Gaps = 20/1343 (1%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 3914
            F+I KFNG +NF+ W+  +K IL     + AI  +PA    D TD+K  ++D  A + + 
Sbjct: 5    FEIPKFNG-SNFSLWKLKIKAILRKDNCLPAIDGRPA----DITDDKRKEMDDNAVANLH 59

Query: 3913 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 3734
            L ++  +  + + + +AK +W+ L +LY  K L + ++LKRRL+ FRMS   SM DHIN 
Sbjct: 60   LAVADSVLSSIAEKKTAKKIWDTLIQLYEVKSLHNRIFLKRRLYTFRMSESTSMPDHINN 119

Query: 3733 FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 3554
             N + + LS    TI + +++ +LL SLP SYD  V  + +         D+L F+DV  
Sbjct: 120  LNTMFAQLSASDFTIGENERAEVLLQSLPDSYDQLVINITNNNI-----VDRLSFNDVAG 174

Query: 3553 ALQAKALRKQEFSDEA----QVEGLFV------DXXXXXXXXXXXXXXXXXSDIECYYCR 3404
            A+  +  R++   D      Q+E L V      +                 ++++CY C 
Sbjct: 175  AILEEESRRKNKEDRQDSSKQMEALTVTRGRSTERGPSGSQNHGRSTSRRKTNLKCYNCG 234

Query: 3403 KPGHIRADCLKLKARDEKR-EKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLN 3227
            K GH++ DC   K   EK  E S S+  VAS ++  E L      + E  ++   K+ L 
Sbjct: 235  KRGHLKKDCWSNKKSGEKSSEASTSQGCVASTSDDGEVL------YSEAAVSTKGKNRLT 288

Query: 3226 DGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLS 3050
            D W++DSGA++HM P +D F TY  V+ G V MGN +A + VG+GTV+++ + G I TL 
Sbjct: 289  DVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQ 348

Query: 3049 EVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVC 2873
            EVRHV +L K+L+S+G L+ LGYKY  + G LKV     + M  ++   NLY L GD   
Sbjct: 349  EVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDT-- 406

Query: 2872 GGAMVSQSIDE-KQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGK 2696
               M   S+    Q E+T +WH RLGHMSE+G+ VL+ + L+ G K+  L FCEHC+  K
Sbjct: 407  -WQMADASVAVGSQEETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISK 465

Query: 2695 QCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNE 2516
            Q R  F  +   ++ +LD IHSDVW  S  VS GGA++FV+FIDD+SRR+W+Y +K K+ 
Sbjct: 466  QHRLKFAKSTARSKHILDLIHSDVW-ESPEVSIGGAKYFVSFIDDYSRRLWVYPIKKKSG 524

Query: 2515 VTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGV 2336
            V  VFK++K  VE + G+ +K +R+DNGGEY +     FC+++GI R FTV  TPQQNGV
Sbjct: 525  VYSVFKEFKAQVELETGKRIKCLRTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGV 584

Query: 2335 AERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVN 2156
            AERMNRTLLER R ML  A L K +WAEA  TACY++NRSPSTAI  K+PME+W G   +
Sbjct: 585  AERMNRTLLERTRAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLKTPMEMWKGKPGD 644

Query: 2155 YSNLRVFGCPAYFHVKED---KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 1985
            YS+LRVFGCP Y         KL  ++++  FLGY   VKGYRLW P   K  +SRDV F
Sbjct: 645  YSSLRVFGCPVYVMYNSQERTKLDPKSRRCTFLGYADNVKGYRLWDPTARKIFVSRDVIF 704

Query: 1984 NERAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 1805
             E  +   +K+                      +     ++T+                 
Sbjct: 705  VENELQKEQKN----------------------DGTTKETATVEIEEKSGEENSEAEPEH 742

Query: 1804 XXESTQQQIENIPSLTSQRERRPP--TRYGFDEYASYALSVFEDEPFTFEEAMSTTHAIE 1631
              +   +  +  P  T+++ R+P   + Y    + +Y L   + EP TF EA++ + A  
Sbjct: 743  EEQEPNEVNDAEPRRTTRQIRKPSWHSEYVMASHDAYCLLSEDGEPSTFHEAVNGSDASL 802

Query: 1630 WKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVK-DGIPDSKGIVSGVRYKARLV 1454
            W  AM EE+++LH+N+TWELV+LPKGRK IG KWV+ +K DG    +      RY+ARLV
Sbjct: 803  WMAAMQEEIEALHRNNTWELVELPKGRKAIGNKWVFKIKRDGNDQVE------RYRARLV 856

Query: 1453 AKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMS 1274
             KGYAQ+EG+D+NE+FSPVV+ T+IR++LA  A F+L LEQLDVKTAFLHG LEE+IYM 
Sbjct: 857  VKGYAQKEGIDFNEIFSPVVRLTTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYML 916

Query: 1273 QPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPG 1094
            QP G+E   +E+ VCRL KSLYGLKQ+PR WYKRFD+F++   Y R   D C Y+K+F  
Sbjct: 917  QPEGFEEKERENLVCRLTKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFDD 976

Query: 1093 GSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLC 914
            G F+ LLLYVDDML+   +K  +  LK QL+ EF+MKDLGPA KILGM+I RDR   K+ 
Sbjct: 977  GDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIW 1036

Query: 913  LTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLM 734
            L+QK+YL+KVLRRF M +   IS P+P   KLS  + P++  E   MS+VPYA+AVGSLM
Sbjct: 1037 LSQKNYLQKVLRRFNMQDYNPISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLM 1096

Query: 733  YAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGF 554
            YAM+CTRPD AQAVG VSR+MA+PG+ HW AVK ILRY+ GT    L F   +   + G+
Sbjct: 1097 YAMICTRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGTSGAALCFGGSE-FTIRGY 1155

Query: 553  VDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLR 374
            VDSD+AGD DK +ST+GY FTL+G  +SW S LQ +VALSTTEAEY+A T+A KEA+W +
Sbjct: 1156 VDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWTQ 1215

Query: 373  GLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVD 194
             L+++LG  Q+ + V CDS SA+H+A+N  +H+RTKHI ++YH VREVV+ G V + K+ 
Sbjct: 1216 RLLEELGHKQQKITVYCDSPSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIH 1275

Query: 193  TEDNPADMLTKVVPKVKFERCLS 125
            T+DN AD++TK +   KF  C S
Sbjct: 1276 TKDNLADVMTKPINSDKFIWCRS 1298


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score = 1116 bits (2887), Expect = 0.0
 Identities = 625/1349 (46%), Positives = 820/1349 (60%), Gaps = 24/1349 (1%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 3914
            +D+   +    F+ WQ  ++ +L       A+        +DW++++    D  A S I 
Sbjct: 41   YDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRT-QDWSNDE-KKKDRKAMSYIH 98

Query: 3913 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 3734
            L LS +I      E +A  LW KLE++ + KDLTS+++LK++L   ++    S+MDH++ 
Sbjct: 99   LHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHLST 158

Query: 3733 FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 3554
            F +I +DL +I V   + D  +ILLCSLP SY  F D +L          D L+  +V  
Sbjct: 159  FKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSH-------DTLILKEVYD 211

Query: 3553 ALQAKALRKQEFSDE---AQVEGLFVDXXXXXXXXXXXXXXXXXSDIE-----------C 3416
            AL AK   K+    E   +Q EGL V                  S              C
Sbjct: 212  ALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSC 271

Query: 3415 YYCRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKS 3236
             YC++ GH  ++C KL+ +D++  K   K       EG  A+        E ++     +
Sbjct: 272  KYCKRDGHDISECWKLQDKDKRTGKYIPKG--KKEEEGKAAVVTDEKSDTELLVAYAGCA 329

Query: 3235 YLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVIT 3059
              +D W+LD+  +YHMCP++D F TY  + GGTV+MG+   C+  G+GTVQ++   G I 
Sbjct: 330  QTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIR 389

Query: 3058 TLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGE-RHGNLYFLRGD 2882
            TLS+VRH+P+L++SLISL  L+  GYKY+   G LKV     + M  + +  NLY LRG 
Sbjct: 390  TLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGT 449

Query: 2881 IVCGG-AMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCI 2705
             + G  A VS S+     ++T LWHMRLGHMSE G++ LS + LL G+   KL FCEHCI
Sbjct: 450  TILGNVAAVSDSLSNS--DATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCI 507

Query: 2704 FGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKH 2525
            FGK  R  F T+ H T+G+LDY+HSD+WGP+   S GGAR+ +T +DD+SR+VW Y +KH
Sbjct: 508  FGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKH 567

Query: 2524 KNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQ 2345
            K +  +VFK+WKTMVE+Q  + VK +R+DNG E+     K +C+ +GIV H+TV  TPQQ
Sbjct: 568  KYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQ 627

Query: 2344 NGVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGN 2165
            NGVAERMN  ++ +ARCMLSNA L K +WAEAV+T CYL+NRSPS A   K+P+EVW+G+
Sbjct: 628  NGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGS 687

Query: 2164 LVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTF 1985
              NYS+LRVFGC AY HV   KL  RA K IFLGYP GVKGY+LWCPE  K +ISR+V F
Sbjct: 688  PANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVF 747

Query: 1984 NERAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXX 1805
            +E  +L  K ST+                S+QVE  + S                     
Sbjct: 748  HESVILHDKPSTN-------VPVESQEKASVQVEHLISSGHAPEKENVAINQDAPVIEDS 800

Query: 1804 XXESTQQQIE-NIPSLTSQRERRPPTRYGFD-EYASYALSVFED-----EPFTFEEAMST 1646
                 QQ  + +I     +R  +PP RY  +    +YALSV E+     EP T+ EA+ +
Sbjct: 801  DSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVS 860

Query: 1645 THAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYK 1466
                 W TAM +EM+SL KNHTWE VKLPK +K I CKW++  K+G+  S       RYK
Sbjct: 861  DDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPS----DEARYK 916

Query: 1465 ARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEED 1286
            ARLVAKGY+Q  G+D+N+VFSP++KH+SIR LL  VA  D ELEQ+DVKTAFLHG LEED
Sbjct: 917  ARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEED 976

Query: 1285 IYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFK 1106
            IYM QP G+ V GKE+ VCRL+KSLYGLKQSPRQWYKRFD+FML QK+ RS YD CVY  
Sbjct: 977  IYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL- 1035

Query: 1105 KFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSK 926
            K   GS +YLLLYVDDMLIAAK KSEI  LK QLS EF MKDLG AKKILGMEITR+R  
Sbjct: 1036 KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRERHS 1095

Query: 925  GKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAV 746
            GKL L+QK Y++KVLRRF MH+ K I            +LCP +  ++E+MS+VPY++AV
Sbjct: 1096 GKLYLSQKGYIKKVLRRFNMHDVKPIIF----------RLCPQSDYDIEYMSRVPYSSAV 1145

Query: 745  GSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLK 566
            GSLMYAM     D     G V                                       
Sbjct: 1146 GSLMYAMFGRSRD-----GFV--------------------------------------- 1161

Query: 565  VCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEA 386
              G+VDSD+AGD D+ RS +GY FT+ G  +SW++ LQ  VALSTTEAEY+A++EA KEA
Sbjct: 1162 --GYVDSDFAGDLDRRRSLTGYVFTIGGCDVSWKASLQATVALSTTEAEYMAISEACKEA 1219

Query: 385  LWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQL 206
            +WLRGL  +L  +   + + CDSQSAI L K+Q++H RTKHID+RYH +R V+  G V++
Sbjct: 1220 IWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYHIIRGVIVEGDVKV 1279

Query: 205  LKVDTEDNPADMLTKVVPKVKFERCLSLI 119
             K+ T DNPADM+TK V   KFE C SL+
Sbjct: 1280 CKISTHDNPADMMTKPVSATKFELCSSLV 1308


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score = 1105 bits (2857), Expect = 0.0
 Identities = 598/1339 (44%), Positives = 826/1339 (61%), Gaps = 39/1339 (2%)
 Frame = -1

Query: 4039 VKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIRLCLSRDITHNFSSETSAK 3860
            +K++L+  +  KAI+ KP  +    +D  W   +    S I L L+ ++  +     +AK
Sbjct: 1    MKNVLIQQETDKAIRTKPTNM----SDVLWTKKNKKTKSCIELHLADNVLLHIGETMTAK 56

Query: 3859 VLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDT 3680
              WE LE +Y  K + ++L LK +L   +M  G  + DHI +F    ++L  +   + D 
Sbjct: 57   EAWENLESVYKGKSIGNKLLLKEQLFGLKMEEGDDLNDHICKFQNCIANLEKVGAKMDDE 116

Query: 3679 DKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVSALQA-----KALRKQEFS 3515
            D +++LL SLPP +  F              K  ++F ++++  +        +R +   
Sbjct: 117  DTAVMLLHSLPPLFKHF--------------KTTMIFKELITLSKVCENPKSYIRLEREE 162

Query: 3514 DEAQVEGLFVDXXXXXXXXXXXXXXXXXSDIE-----------CYYCRKPGHIRADCLKL 3368
            D +Q  GL+V                     +           C+    P H + +C + 
Sbjct: 163  DSSQARGLYVRGKERGRSRNRGGGFQGRGMSKSKGKGKGKKDGCFIYGSPDHWKRNCKQW 222

Query: 3367 KARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHM 3188
            K  ++K + S   + +A+V  G           D E+L +++ S     W LD+  ++H 
Sbjct: 223  K--EKKAQMSGESSQLANVVIGYN-------DEDGELLAISTSSGAPRHWTLDTACTFHT 273

Query: 3187 CPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLI 3011
            C  +D F TY+E N  +V+MGN +  + +G+G V++R H G++  L  VRH P L ++LI
Sbjct: 274  CAHRDWFDTYKEGNTRSVLMGNDSPSRIMGIGMVKIRMHDGIVRALGNVRHTPGLNRNLI 333

Query: 3010 SLGVLESLGYKYAAEYGFLKVFYNGSLKMTGE-RHGNLYFLRGDIVCGGAMVSQSIDEKQ 2834
            SL  ++ +G+ +  + G LKV     + M G  +  N+Y L G  V GGA V    D+  
Sbjct: 334  SLSTMDRVGFWHKGQNGVLKVGKGQMVYMKGAIQPDNMYKLTGSTVEGGAGVCTEEDK-- 391

Query: 2833 VESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFG--TAVHH 2660
               T LW  RLGHMS++G+  L  K  L G  +  L+FC +C  GKQ R SF   ++ + 
Sbjct: 392  ---TELWRRRLGHMSQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTRVSFNLSSSENK 448

Query: 2659 TQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMV 2480
            ++G+LDYIH+DVWGPS T+SKGGAR+FV+FIDDFSR+VW++ MK KNEV   FK+WK  V
Sbjct: 449  SKGVLDYIHTDVWGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEVFTKFKEWKAEV 508

Query: 2479 EKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERA 2300
              Q GR +K +RSDNGGEY +    + C+++GI RHFTVK +PQQNGVAERMNRTL+E+ 
Sbjct: 509  GNQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNGVAERMNRTLMEKE 568

Query: 2299 RCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAY 2120
            R M  +A L + +WAEA N ACYL+NRSPS AI  K   EVW+G  V+YSNLRVFGC AY
Sbjct: 569  RSMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEVWSGKPVDYSNLRVFGCSAY 628

Query: 2119 FHVKED---KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSK--K 1955
             H+ +D   KL  ++ + +F+G+  GVKGY+LW     K +ISRDV F+ER  +     K
Sbjct: 629  AHIPKDERTKLEPKSLECLFIGFEKGVKGYKLWDIVNEKKVISRDVVFDEREAISISLAK 688

Query: 1954 STDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXXESTQQQIE 1775
             +  DS+              QVEQ    +  +                      + Q  
Sbjct: 689  PSVADSEA-------------QVEQNEQGNDEVAIEEPEHQQQPTVMAQVEQSPQRGQNS 735

Query: 1774 NIPSLTS-----------QRERRPPTRYGFD--EYASYALSVFEDEPFTFEEAMSTTHAI 1634
             IP               +R R+P  R+GF+  E  S ALS+ + +P T+E+A+ +  + 
Sbjct: 736  PIPQAPESFKRSIALDKPKRNRKPIQRFGFEPEEDVSRALSISQGDPTTYEDAIESVESA 795

Query: 1633 EWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYKARLV 1454
             W  AM EEM+SLHKN  WELV  PK RK +GCKWV+  K+GI +   I     YKARLV
Sbjct: 796  GWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAIT----YKARLV 851

Query: 1453 AKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMS 1274
            AKGY+Q+EGVDY+E+FSPVVKHTSIR+LL+  AQ+D+E+EQ+DVKTAFLHG+LEEDIYMS
Sbjct: 852  AKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMS 911

Query: 1273 QPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPG 1094
            QP G+   GKE+ VCRL+KSLYGLKQSPRQWYK FDT+ML+  YTR +YD CVY+  F  
Sbjct: 912  QPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFED 971

Query: 1093 GSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLC 914
            G  + LLLYVDDMLIA +   +I  LKK+L  EF+MKDLG A+KILG+EI RDR+ GK+ 
Sbjct: 972  GKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKIW 1031

Query: 913  LTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLM 734
            L+Q+ Y+ K+L RF M  +K +S+P+ +  +LS +  P+  +E++ M  VPYA+AVG LM
Sbjct: 1032 LSQEKYIMKILERFNMAEAKVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCLM 1091

Query: 733  YAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQ-SLKVCG 557
            YAM+CTRPD AQA+ +VS+YM+NPG+ HW AVK I +YL  T  +G++FE+ Q    V G
Sbjct: 1092 YAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNTRQLGIMFERRQGEACVAG 1151

Query: 556  FVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWL 377
            FVDSD+AGD D+ RST+GY FT  G P+SW++ LQ + ALSTTEAEY+A+TEA KEA+WL
Sbjct: 1152 FVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASKEAIWL 1211

Query: 376  RGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKV 197
             GL   LG+ Q  VVV CDSQSAIHLAKNQV+HARTKHID RYH++R+ V+ G++ + KV
Sbjct: 1212 NGLAGQLGVHQEGVVVKCDSQSAIHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIVEKV 1271

Query: 196  DTEDNPADMLTKVVPKVKF 140
             T+DN AD LTK V   K+
Sbjct: 1272 HTDDNAADFLTKPVSVEKY 1290


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score = 1103 bits (2853), Expect = 0.0
 Identities = 606/1320 (45%), Positives = 808/1320 (61%), Gaps = 30/1320 (2%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 3914
            FD+   N    F+ WQ  ++ IL                  +WT E+    D  A + I+
Sbjct: 3    FDLPLLNYDTRFSLWQVKMRGILAQTHDYDEALDNFGKRRAEWTAEEIRK-DQKALALIQ 61

Query: 3913 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHINE 3734
            L L  DI     +E ++  LW KLE + + KDLTS++ +K +L   +M    S++ H+ E
Sbjct: 62   LHLHNDILQECLTEKTSAELWLKLESICMSKDLTSKMQMKMKLFTLKMKEEDSVITHMAE 121

Query: 3733 FNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVVS 3554
            F KI +DL ++ V   D D  ++LLCSLP SY  F D +L  +       D+L   +V  
Sbjct: 122  FKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLSR-------DELTLKEVYD 174

Query: 3553 ALQAKALRK----QEFSDEAQVEGLFVDXXXXXXXXXXXXXXXXXSDIE--------CYY 3410
            ALQ K   K     + S  ++ E L V                              C Y
Sbjct: 175  ALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVY 234

Query: 3409 CRKPGHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYL 3230
            C+   H   +C K++A+ E++ K D K  VAS A   +   D +  F   V         
Sbjct: 235  CKLKNHNIDECKKVQAK-ERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG------- 286

Query: 3229 NDGWMLDSGASYHMCPSKDCFTTYREVNGGTVM-MGNSNACKTVGVGTVQVRSH-GVITT 3056
            +D W+LDS  S+H+C  ++ F++Y+ V  G V+ MG+ N C  VG+G+VQ+++  G+  T
Sbjct: 287  HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRT 346

Query: 3055 LSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGE-RHGNLYFLRGDI 2879
            L  VR++P + ++LISL  L++ GYKY+   G LKV     + + G+     LY LRG  
Sbjct: 347  LKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCT 406

Query: 2878 VCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFG 2699
            + G    + +I   +   T LWHMRLGHMS  GM+ L  + LL G  + K+ FCEHCIFG
Sbjct: 407  LTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFG 466

Query: 2698 KQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKN 2519
            K  R  F T+VH T+G LDY+H+D+WGPS+  S GGAR+ +T IDD+SR+VW Y +KHK+
Sbjct: 467  KHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKD 526

Query: 2518 EVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNG 2339
            +    FK WK M+E+Q  R VK +R+DNGGE+      ++C ++GIVRH T+  TPQQNG
Sbjct: 527  DTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNG 586

Query: 2338 VAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLV 2159
            VAERMNRT++ RARCMLS+A ++K +WAEA +TACYL+NRSPS  +  K+P+EVW+G   
Sbjct: 587  VAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPA 646

Query: 2158 NYSNLRVFGCPAYFHVKEDKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNE 1979
            +YS L+VFGC AY HV   KL  RA K +FLGY  GVKGY+LW PE  K  +SR V FNE
Sbjct: 647  DYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNE 706

Query: 1978 RAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXX 1799
              M  +   ++   +             MQVE     +                      
Sbjct: 707  SVMFTNSLPSEHVPE------KELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDA 760

Query: 1798 ESTQQQIENIPSLT---------SQRERRPPTRYGFD-EYASYALSVFED-----EPFTF 1664
                QQ   I  L          S+R  +PP R   +   + YALS  E      EP T+
Sbjct: 761  HDDVQQTPPILQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATY 820

Query: 1663 EEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIV 1484
            +EA+    +  W +AM EEM+SL KN TWE+V LPK +K I CKW++  K+G+  S+   
Sbjct: 821  KEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEP-- 878

Query: 1483 SGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLH 1304
               +YKARLVA+GY+Q  GVDYN+VFSPVVKH+SIR  L+ VA  DLELEQLDVKTAFLH
Sbjct: 879  --PKYKARLVARGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLH 936

Query: 1303 GNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYD 1124
            G LEEDIYM QP G+ V GKE YVC+L++SLYGLKQSPRQW KRFD+FML   + RSKYD
Sbjct: 937  GELEEDIYMDQPEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYD 996

Query: 1123 QCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEI 944
             CVY K    GS +YLLLYVDDMLIAAKSK EI  LKK LS EF+MKDLG AKKILGMEI
Sbjct: 997  SCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEI 1055

Query: 943  TRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKV 764
            +RDR  G L L+Q +Y++KVL+RF M N+KA+S PI    KLS   CP+   E+E+MS+V
Sbjct: 1056 SRDRKSGLLFLSQHNYIKKVLQRFNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRV 1115

Query: 763  PYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFE 584
            PY++AVGSLMYAMVC+RPD + A+ LVSRYM+NPG+ HW AV+ I RYL GT    L F 
Sbjct: 1116 PYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFG 1175

Query: 583  KEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVT 404
            +     + G+VDSDYA D D+ RS +GY FT+    +SWR+ LQ +VALSTTEAEY+A+ 
Sbjct: 1176 RTDK-GLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAIC 1234

Query: 403  EAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVD 224
            EA KE +WL+GL  +L  ++  + ++CDS+SAI+L K+Q++H RTKHIDI+YH VR+V++
Sbjct: 1235 EACKELIWLKGLYAELSGVESCISLHCDSESAIYLTKDQMFHERTKHIDIKYHFVRDVIE 1294


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score = 1084 bits (2804), Expect = 0.0
 Identities = 596/1340 (44%), Positives = 835/1340 (62%), Gaps = 17/1340 (1%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEK-WADLDLMACSTI 3917
            F+I KFNGKN F+ W+  VK IL     + AI  +P     D+TD+K W++++  A + +
Sbjct: 5    FEIEKFNGKN-FSLWKLKVKAILRKDNCLAAISERPV----DFTDDKKWSEMNEDAMADL 59

Query: 3916 RLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDHIN 3737
             L ++  +  +   + +A  +W+ L +LY  K L ++++LKR+L+  RMS   S+ +H+N
Sbjct: 60   YLSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLN 119

Query: 3736 EFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDDVV 3557
              N + S L+++S  I   +++ +LL SLP SYD  +  L +         D LVFDDV 
Sbjct: 120  TLNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNILT-----DYLVFDDVA 174

Query: 3556 SALQAKALRKQEFSDEA----QVEGLFV---DXXXXXXXXXXXXXXXXXSDIECYYCRKP 3398
            +A+  +  R++   D      Q E L V                      ++ CY C K 
Sbjct: 175  AAVLEEESRRKNKEDRQVNLQQAEALTVMRGRSTERGQSSGRGRSKSSKKNLTCYNCGKK 234

Query: 3397 GHIRADCLKLKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGW 3218
            GH++ DC  L       + S+ +  VAS ++   AL    C   E  +    +    D W
Sbjct: 235  GHLKKDCWNLA------QNSNPQGNVASTSDDGSAL---CC---EASIAREGRKRFADIW 282

Query: 3217 MLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVR 3041
            ++DSGA+YHM   K+ F  Y  ++GG+V   + +A + +G+GT++++ + G + T+ +VR
Sbjct: 283  LIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDVR 342

Query: 3040 HVPDLRKSLISLGVLESLGYKYAAEYGFLKVFYNGSLKMTGER-HGNLYFLRGDIVCGGA 2864
            HV  L+K+L+S G+L++   +   + G +K+F    + M GE+   NLY L+G+ +    
Sbjct: 343  HVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGETL---Q 399

Query: 2863 MVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRS 2684
                S+     +ST LWH +LGHMS++GM +L  + L+ G     L  CEHCI  KQ R 
Sbjct: 400  EAEASVAACSPDSTLLWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQHRL 459

Query: 2683 SFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEV 2504
             F T+    + +L+ +HSDVW  +   S GGA++FV+FIDD+SRR W+Y +K K++V   
Sbjct: 460  KFSTSNSRGKVVLELVHSDVW-QAPVPSLGGAKYFVSFIDDYSRRCWVYPIKKKSDVFAT 518

Query: 2503 FKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERM 2324
            FK +K  VE   G+ +K  R+DNGGEY  +   +FC+++GI R FTV  TPQQNGVAERM
Sbjct: 519  FKAFKARVELDSGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQFTVAYTPQQNGVAERM 578

Query: 2323 NRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNL 2144
            NRTLLER R ML  A L+K +WAEAVNTACYLVNR+PSTAI+ K+PME+WTG  V+YSNL
Sbjct: 579  NRTLLERTRAMLRAAGLEKSFWAEAVNTACYLVNRAPSTAIELKTPMEMWTGKPVDYSNL 638

Query: 2143 RVFGCPAY--FHVKE-DKLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDVTFNERA 1973
             +FG   Y  ++ +E  KL  +++K  FLGY  GVKGYRLW P  +K +ISRDV F E  
Sbjct: 639  HIFGSIVYAMYNAQEITKLDPKSRKCRFLGYADGVKGYRLWDPTAHKVVISRDVIFVEDR 698

Query: 1972 MLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXXXXXXES 1793
            +   +     + +             +QVE+     S+                    E 
Sbjct: 699  LQRGEVDDSTEKE-------KPETTQIQVEEEFEQDSS--------------EAEPAHEE 737

Query: 1792 TQQQIENIPSLT-SQRERRPPT---RYGFDEYASYALSVFEDEPFTFEEAMSTTHAIEWK 1625
             + +    P+   S RE+R PT    Y  +   +Y L   + EP TF+EA++++   +W 
Sbjct: 738  PEPESSGAPTTRQSDREKRRPTWHSDYVMEGNVAYCLLTEDGEPSTFQEAINSSDVSQWT 797

Query: 1624 TAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSGVRYKARLVAKG 1445
             AM EE+++LHKN+TW+LV LP+GRK IG KWV+ +K    D        RY+ARLV KG
Sbjct: 798  AAMQEEIEALHKNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQVE-----RYRARLVVKG 852

Query: 1444 YAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPI 1265
            YAQ+EG+D+NE+FSPVV+ T++RV+LA  A F+L LEQLDVKTAFLHG+LEE+IYM QP 
Sbjct: 853  YAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAFLHGDLEEEIYMLQPE 912

Query: 1264 GYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSF 1085
            G+E    ++ VCRL KSLYGLKQ+PR WYKRFD+F++   Y R   D C YFK+F   +F
Sbjct: 913  GFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRFGKDNF 972

Query: 1084 VYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQ 905
            V LLLYVDDML+A  +K  ID LK QL+ EFEMKDLGPA KILGM+I RDR   K+ L+Q
Sbjct: 973  VILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKILGMQIHRDRGNRKIWLSQ 1032

Query: 904  KSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAM 725
            K+YL+K+L RF M + K+IS P+P  +K+S  + P+  E    MS+VPYA+AVGSLM+AM
Sbjct: 1033 KNYLKKILSRFSMQDCKSISTPLPINLKVSSSMSPSNEEGRMEMSRVPYASAVGSLMFAM 1092

Query: 724  VCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDS 545
            +CTRPD AQAVG+VSRYMANPGR HW  VK ILRY+ GT D+ L +     + + G+VDS
Sbjct: 1093 ICTRPDIAQAVGVVSRYMANPGREHWNCVKRILRYIKGTSDVALCYGGSDFI-INGYVDS 1151

Query: 544  DYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLV 365
            DYAGD DK +ST+GY F ++G  +SW S LQ +VA STTEAEY+A T+A KEA+WL+ L+
Sbjct: 1152 DYAGDLDKSKSTTGYVFKVAGGAVSWVSKLQAVVATSTTEAEYVAATQASKEAIWLKMLL 1211

Query: 364  KDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTED 185
            ++LG  Q  V + CDSQSA+HLA+N  +H+RTKHI ++YH +RE V  G V L K+ T D
Sbjct: 1212 EELGHKQEFVSLFCDSQSALHLARNPAFHSRTKHIRVQYHFIREKVKEGTVDLQKIHTAD 1271

Query: 184  NPADMLTKVVPKVKFERCLS 125
            N AD LTK++   KF  C S
Sbjct: 1272 NVADFLTKIINVDKFTWCRS 1291


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score = 1066 bits (2757), Expect = 0.0
 Identities = 600/1353 (44%), Positives = 819/1353 (60%), Gaps = 28/1353 (2%)
 Frame = -1

Query: 4093 FDIIKFNGKNNFTSWQTDVKDILVSM---KQIKAIKAKPATLPKDWTDEKWADLDLMACS 3923
            +++ KFNG N F++WQ  ++D+L+     K +     KP T+      E WADLD  A S
Sbjct: 6    YEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKA----EDWADLDERAAS 61

Query: 3922 TIRLCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSMMDH 3743
             IRL LS D+ +N   E +A+ +W +LE LY+ K LT++LYLK++L+A  MS G + + H
Sbjct: 62   AIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSH 121

Query: 3742 INEFNKICSDLSNISVTISDTDKSMILLCSLPPSYDAFVDYLLSGKTDEGEDKDKLVFDD 3563
            +N FN + + L+N+ V I + DK+++LL SLP SYD     +L GKT        +   D
Sbjct: 122  LNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTT-------IELKD 174

Query: 3562 VVSAL--QAKALRKQEFSDEAQV-EGLFVDXXXXXXXXXXXXXXXXXSDIE------CYY 3410
            V SAL    K  +K E   +A + EG                      +        CY 
Sbjct: 175  VTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYN 234

Query: 3409 CRKPGHIRADCLK-LKARDEKREKSDSKNVVASVAEGSEALEDPMCGFDEEVLTVTSKSY 3233
            C +PGH + DC    K + E   + +  N  A V      +       +EE + ++    
Sbjct: 235  CNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVL--FINEEEECMHLSGPE- 291

Query: 3232 LNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVMMGNSNACKTVGVGTVQVRSH-GVITT 3056
                W++D+ AS+H  P +D F  Y   + GTV MGN++  K  G+G + ++++ G    
Sbjct: 292  --SEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLV 349

Query: 3055 LSEVRHVPDLRKSLISLGVLESLGYK-YAAEYGFLKVFYNGSLKMT-GERHGNLYFLRGD 2882
            L +VRHVPDLR +LIS   L+  GY+ Y A   +      GSL +  G   G LY    +
Sbjct: 350  LKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLT--KGSLVIAKGVARGTLYRTNAE 407

Query: 2881 IVCGGAMVSQSIDEKQVESTRLWHMRLGHMSEKGMSVLSSKGLLGGEKTCKLDFCEHCIF 2702
            I  G    +Q  DE  V+   LWH R+GHMSEKG+ +L+ K L+   K   +  C++C+F
Sbjct: 408  ICQGELNAAQ--DEISVD---LWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLF 462

Query: 2701 GKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVSKGGARWFVTFIDDFSRRVWLYTMKHK 2522
            GKQ R SF T+      +LD ++SDV GP    S GG ++FVTFIDD SR++W+Y +K K
Sbjct: 463  GKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTK 522

Query: 2521 NEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYIEDPLKEFCEEQGIVRHFTVKGTPQQN 2342
            ++V +VF+K+  +VE++ GR +K++RSDNGGEY     +E+C   GI    TV GTPQ N
Sbjct: 523  DQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHN 582

Query: 2341 GVAERMNRTLLERARCMLSNASLDKIWWAEAVNTACYLVNRSPSTAIKCKSPMEVWTGNL 2162
            GVAERMNRT++E+ R ML  A L K +W EAV TACYL+NRSPS  +  + P  VWT   
Sbjct: 583  GVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKE 642

Query: 2161 VNYSNLRVFGCPAYFHVKED---KLGVRAKKAIFLGYPLGVKGYRLWCPELNKFIISRDV 1991
            V+YS+L+VFGC A+ HV ++   KL  ++   IF+GY     GYRLW P   K I SRDV
Sbjct: 643  VSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDV 702

Query: 1990 TFNERAMLDSKKSTDWDSQIXXXXXXXXXXXSMQVEQRVPSSSTIXXXXXXXXXXXXXXX 1811
             F E  +   + + D   ++                    + ST                
Sbjct: 703  VFRESEV---RTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIE 759

Query: 1810 XXXXES---------TQQQIENIPSLTSQRERRPPTRYGFDEYASYALSVFEDEPFTFEE 1658
                           TQ + ++ P   S+R R    RY   EY    L   + EP + +E
Sbjct: 760  QGEQLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYV---LISDDREPESLKE 816

Query: 1657 AMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKWVYTVKDGIPDSKGIVSG 1478
             +S     +   AM EEM+SL KN T++LV+LPKG++ + CKWV+ +K       G    
Sbjct: 817  VLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLK-----KDGDCKL 871

Query: 1477 VRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQFDLELEQLDVKTAFLHGN 1298
            VRYKARLV KG+ Q++G+D++E+FSPVVK TSIR +L+  A  DLE+EQLDVKTAFLHG+
Sbjct: 872  VRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGD 931

Query: 1297 LEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKRFDTFMLQQKYTRSKYDQC 1118
            LEE+IYM QP G+EVAGK+  VC+L KSLYGLKQ+PRQWY +FD+FM  Q Y ++  D C
Sbjct: 932  LEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPC 991

Query: 1117 VYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEFEMKDLGPAKKILGMEITR 938
            VYFK+F   +F+ LLLYVDDMLI  K K  I  LK  LS  F+MKDLGPA++ILGM+I R
Sbjct: 992  VYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVR 1051

Query: 937  DRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSKQLCPTTTEEMEFMSKVPY 758
            +R+  KL L+Q+ Y+E+VL RF M N+K +S P+   +KLSK++CPTT EE   M+KVPY
Sbjct: 1052 ERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPY 1111

Query: 757  ANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKGILRYLNGTLDIGLVFEKE 578
            ++AVGSLMYAMVCTRPD A AVG+VSR++ NPG+ HW AVK ILRYL GT    L F   
Sbjct: 1112 SSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGS 1171

Query: 577  QSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQPIVALSTTEAEYIAVTEA 398
              + + G+ D+D AGD D  +S++GY FT SG  ISW+S LQ  VALSTTEAEYIA TE 
Sbjct: 1172 DPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATET 1230

Query: 397  VKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHARTKHIDIRYHKVREVVDNG 218
             KE +WL+  +++LG+ Q+  VV CDSQSAI L+KN +YHARTKHID+RYH +RE+VD+ 
Sbjct: 1231 GKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDE 1290

Query: 217  LVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 119
             +++LK+ T +NPADMLTKVVP+ KFE C  L+
Sbjct: 1291 SLKVLKISTNENPADMLTKVVPRNKFELCKELV 1323